Query psy11902
Match_columns 336
No_of_seqs 136 out of 235
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 21:53:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1imh_C NF-AT5, tonebp, nuclear 100.0 1.6E-88 5.3E-93 640.7 24.2 229 84-336 10-238 (281)
2 1p7h_L Nuclear factor of activ 100.0 7.1E-86 2.4E-90 623.9 23.8 228 84-336 9-243 (286)
3 1nfk_A Protein (nuclear factor 100.0 2.6E-73 8.8E-78 545.8 21.6 211 90-335 1-266 (325)
4 1ikn_A P65, protein (NF-kappa- 100.0 6.2E-73 2.1E-77 535.6 21.9 205 91-335 1-227 (286)
5 1svc_P Protein (nuclear factor 100.0 2.3E-72 7.9E-77 545.5 21.8 216 86-335 37-306 (365)
6 1gji_A C-REL protein, C-REL pr 100.0 5.4E-72 1.9E-76 526.8 20.8 206 91-335 1-230 (275)
7 1a3q_A Protein (nuclear factor 100.0 1.3E-71 4.5E-76 526.3 21.8 206 90-335 1-240 (285)
8 2v2t_A RELB, transcription fac 100.0 2.4E-71 8.2E-76 525.2 14.3 212 85-335 7-242 (288)
9 2o61_A Transcription factor P6 100.0 3.3E-67 1.1E-71 529.8 22.2 206 90-335 1-228 (540)
10 1bvo_A Transcription factor ga 100.0 2.4E-52 8.3E-57 371.8 15.8 152 91-255 1-175 (175)
11 1u36_A DNA-binding, nuclear fa 99.8 6.2E-21 2.1E-25 158.2 6.0 58 258-335 2-60 (106)
12 2yrp_A Nuclear factor of activ 99.8 8.8E-21 3E-25 159.2 5.5 63 254-336 3-66 (114)
13 1ikn_C P50D, protein (NF-kappa 99.8 2E-20 6.8E-25 158.0 6.3 58 258-335 2-60 (119)
14 1my7_A NF-kappab P65 (RELA) su 99.7 1E-18 3.4E-23 146.8 6.6 54 257-335 1-55 (114)
15 1zk9_A Transcription factor RE 99.7 8.3E-19 2.9E-23 146.5 4.8 59 253-336 4-66 (110)
16 1oy3_C Transcription factor P6 99.7 5E-18 1.7E-22 146.3 6.6 54 257-335 1-55 (136)
17 3muj_A Transcription factor CO 94.2 0.033 1.1E-06 48.3 3.7 44 259-326 5-48 (138)
18 3mlp_A Transcription factor CO 93.9 0.1 3.4E-06 51.5 7.0 44 259-326 231-274 (402)
19 2cxk_A Camta1, calmodulin bind 41.8 22 0.00074 28.1 3.5 22 258-279 5-26 (95)
20 2uzx_B Hepatocyte growth facto 24.7 55 0.0019 34.1 4.1 21 259-279 541-561 (727)
21 3orj_A Sugar-binding protein; 20.3 81 0.0028 31.8 4.1 34 258-313 112-145 (439)
No 1
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=100.00 E-value=1.6e-88 Score=640.72 Aligned_cols=229 Identities=53% Similarity=0.914 Sum_probs=221.8
Q ss_pred cccCCCCeeEEEeeCCccccccceeccCCCCccCCCCCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceeccc
Q psy11902 84 YSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGK 163 (336)
Q Consensus 84 ~ps~~~~p~L~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK 163 (336)
+|+..++|||+|+|||+++|||||+||||||||+|+++||||+|||+||+|+|.|+|+|+|+|++++|||||||||||||
T Consensus 10 ~p~~~~~p~l~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkl~gy~g~a~v~v~~~t~d~~~~pH~h~~v~~lvGK 89 (281)
T 1imh_C 10 YPVKSEGKELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVGNDSGRVKPHGFYQACRVTGR 89 (281)
T ss_dssp CCSEETTEEEEEEECBCSBCCCEETTSCCCCCCCBTTSSSCCEEEEESCCSCEEEEEEEEESSSSCCBCSSEEEEECCCT
T ss_pred CCccCCCceEEEEeCCchhceEEEecCCCCcccccccCCCCCEEEEecCCCCEEEEEEEEECCCCCCCCccceeeEeecC
Confidence 78889999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcchhhhcccCCeeeEEeEEEEecCCCCceEe
Q psy11902 164 NSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEV 243 (336)
Q Consensus 164 ~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~~~~~k~n~VRL~Fqv~i~~~g~g~~~~ 243 (336)
++|+|.|.+++|+|++||+|.|+++|+++|+||||||+||+|||+|+++++ .++|+|+|||||||||+++ +|++++
T Consensus 90 ~~t~c~e~~~~g~~~~ev~l~P~~~m~~~f~~lGI~~~rkkdve~rk~~~~---~~~k~~~VRL~F~v~i~~~-~G~~~~ 165 (281)
T 1imh_C 90 NTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKLRNADVEARIGIAG---SKKKSTRARLVFRVNIMRK-DGSTLT 165 (281)
T ss_dssp TSCCCEEEEETTEEEEEEEECGGGTTEEECCSEEEEECCHHHHHTTCTTSS---TTCCCCEEEEEEEEEEECS-SSCEEE
T ss_pred CCCCccccccCCCEEEEEecCCCCCCEEEEcCeeEEEEeecChHHhcCCCh---hhhhccEEEEEEEEEEECC-CCCEEE
Confidence 999999999999999999999999999999999999999999999998765 6788999999999999998 577999
Q ss_pred ceeeeeeeecCCCCCCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEEEEeeCCccCe
Q psy11902 244 LQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQW 323 (336)
Q Consensus 244 l~V~S~PI~dsK~~~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF~E~~~~~~~W 323 (336)
|+++|+||||+|++++|+|||+|++||||+||+||| ||||||++||+|||||+++|+.+|
T Consensus 166 L~~~S~PI~d~k~~~~l~I~r~s~~sg~v~GG~Ev~--------------------Llc~kv~KdikVrF~E~~~d~~~W 225 (281)
T 1imh_C 166 LQTPSSPILCTQPAGVPEILKKSLHSCSVKGEEEVF--------------------LIGKNFLKGTKVIFQENVSDENSW 225 (281)
T ss_dssp EEEECCCEECSCCCCCCEEEEESCCEEETTCCCEEE--------------------EEEECCCTTCEEEEESSSCTTCSC
T ss_pred ccCcCcceecCCCCCCCeEEEEecCccccCCCcEEE--------------------EEeeccCCCcEEEEEEeCCCCCce
Confidence 999999999999999999999999999999999999 999999999999999998888999
Q ss_pred eEeEeCCccccCC
Q psy11902 324 EESVLPDKEFLQQ 336 (336)
Q Consensus 324 Ea~a~~dk~~~~~ 336 (336)
|++|+||++++||
T Consensus 226 E~~~~f~~~dvhQ 238 (281)
T 1imh_C 226 KSEAEIDMELFHQ 238 (281)
T ss_dssp EEEECBCGGGCCS
T ss_pred EEeEEeChhhccc
Confidence 9999999999997
No 2
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Probab=100.00 E-value=7.1e-86 Score=623.86 Aligned_cols=228 Identities=40% Similarity=0.675 Sum_probs=215.5
Q ss_pred cccCCCCeeEEEeeCCccccccceeccCCCCccCCCCCCCccEEEEecccC--CeEEEEEEeeCCCC-CCCCccccccee
Q psy11902 84 YSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNG--PATLEVFIGTDQGK-IAPHMFYQACRV 160 (336)
Q Consensus 84 ~ps~~~~p~L~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkL~gY~G--pa~i~V~lvT~d~~-~~PH~f~qvhRL 160 (336)
+|+..++|||+|+|||+++|||||+||||||||+|++ ||||+|||+||+| ++.|+|+++|+|++ ++||||||||+|
T Consensus 9 ~ps~~~~~~l~I~eQP~~~~RfRY~cEGS~Gsi~g~s-kt~PtVkl~gY~g~~~v~v~v~~~t~d~~~~~pHp~~~vh~l 87 (286)
T 1p7h_L 9 LSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPT-GGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRI 87 (286)
T ss_dssp CBSEETTEEEEEEECCCSBCCCBCTTSCCCCBCCCTT-SSCCEEEECSCCCSSCEEEEEEEECCSSSCCCBCTTEEEEEC
T ss_pred CCccCCCceeEEEECCccccEEEEEcCCCCCcccCcC-CCCCEEEEECccCCceEEEEEEEEcCCCCCCCCCccccceec
Confidence 7999999999999999999999999999999999987 6999999999988 67899999998865 799999999999
Q ss_pred cccC-CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcchhhhcccCCeeeEEeEEEEecCCCC
Q psy11902 161 AGKN-STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTR 239 (336)
Q Consensus 161 vGK~-~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~~~~~k~n~VRL~Fqv~i~~~g~g 239 (336)
|||+ .|+|.|.+++|+|+++|++.|++||+++|+||||||+||+|||+|+++++ +++|||+|||||||||+++ +|
T Consensus 88 vGK~~~t~c~e~~~~g~~v~~i~~~p~~~m~~~f~~lGIl~~rn~diE~r~~~~~---~~~k~~~VRLcFqvfi~~~-~G 163 (286)
T 1p7h_L 88 TGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETD---IGRKNTRVRLVFRVHIPES-SG 163 (286)
T ss_dssp CCCSSCCSCCCCBCSSSCBEEEEECGGGTTEEECCSEEEEECCHHHHTTSSSCCC---CCTTCCEEEEEEEEEEEET-TT
T ss_pred cCCCCccccceeccCCceEEEEEeCCCCccEEEEeccccchhcccCHHHhhcccc---cccCCceEEEEEEEEEECC-CC
Confidence 9999 78999999999999999999999999999999999999999999999876 6789999999999999998 57
Q ss_pred ceEeceeeeeeeecCCCC--CCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEEEEee
Q psy11902 240 ETEVLQVASHPIMCNQPP--GVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMV 317 (336)
Q Consensus 240 ~~~~l~V~S~PI~dsK~~--~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF~E~~ 317 (336)
++++|||+|+||||+|++ ++|+|||||++||||+||+||| ||||||++||+|||||++
T Consensus 164 ~~~~lpV~S~PI~~~k~~~~~~l~I~r~s~~sg~v~GG~Ei~--------------------Llc~kv~KDikVrF~E~~ 223 (286)
T 1p7h_L 164 RIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMI--------------------LTGQNFTSESKVVFTEKT 223 (286)
T ss_dssp EEEEEEEECCCEECSCCCCCCCCEEEEESCSEEETTCCCEEE--------------------EEEESCCSSCEEEEEEEC
T ss_pred CEecCceeccceecCCcCCCCCCeEEEeccccccccCCcEEE--------------------EEecccCCCcEEEEEEEC
Confidence 899999999999999985 7899999999999999999999 999999999999999987
Q ss_pred CC-ccCeeEeEeCCccccCC
Q psy11902 318 AD-ICQWEESVLPDKEFLQQ 336 (336)
Q Consensus 318 ~~-~~~WEa~a~~dk~~~~~ 336 (336)
+| +.+||++|+||.+..||
T Consensus 224 ~dg~~~We~~g~f~~dvh~Q 243 (286)
T 1p7h_L 224 TDGQQIWEMEATVDKDKSQP 243 (286)
T ss_dssp SSSCEEEEEEECBCTTTCBT
T ss_pred CCCCcceEEeEEeCcccccc
Confidence 64 68999999999988776
No 3
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B
Probab=100.00 E-value=2.6e-73 Score=545.82 Aligned_cols=211 Identities=29% Similarity=0.426 Sum_probs=184.2
Q ss_pred CeeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceeccc
Q psy11902 90 SVYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGK 163 (336)
Q Consensus 90 ~p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK 163 (336)
+|||+|+|||++| |||||+||| |||||+|. ++||||+|||+||+|+|.|+|+|||+|++++||| |+||||
T Consensus 1 gP~L~I~eQP~~r~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~~y~g~a~i~vslvT~d~~~~pH~----H~LvGk 76 (325)
T 1nfk_A 1 GPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHA----HSLVGK 76 (325)
T ss_dssp CCEEEESSCBCSSSCCCBCGGGCCCSSCCCBTTCCTTSCCCCEEEEETCCSSCEEEEEEECSSSSCCBCS----SEEEST
T ss_pred CCccEEEECCccccceeEEeeccCCCCCccccccCCCCCcCCEEEEecCCCcEEEEEEEEEcCCCCCccc----eeeecc
Confidence 5899999999998 999999999 69999875 4689999999999999999999999999999999 559999
Q ss_pred CCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCC--cc--------h------------------
Q psy11902 164 NSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPE--DS--------S------------------ 215 (336)
Q Consensus 164 ~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e--~~--------~------------------ 215 (336)
+ |. +|+| +|.|.| ++|+++|+||||||+||+|||+++.. ++ +
T Consensus 77 ~---c~----~gv~--~v~v~p-~~m~~~f~nlGI~~v~kkdv~~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 146 (325)
T 1nfk_A 77 H---CE----DGVC--TVTAGP-KDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDR 146 (325)
T ss_dssp T---EE----TTEE--EEECCS-SCCEEECCSCEEECCCSTTHHHHHHHHHHHHHHTTSCCCCCCCTTCSCCCCSSSSCC
T ss_pred c---cC----CccE--EEEeCC-CCceEEecccccEEEeechHHHHHHHHHHhhcccccccCcccccccccccccccccc
Confidence 9 97 8955 567779 68999999999999999999843311 11 0
Q ss_pred -------------hh---hcccCCeeeEEeEEEEecCCCCc-eEec-eeeeeeeecCCCC--CCCceeecCCCccccCCC
Q psy11902 216 -------------AK---NKKRSTRCRMVFRTTIIHPGTRE-TEVL-QVASHPIMCNQPP--GVPEICKKSLTSCPVTGG 275 (336)
Q Consensus 216 -------------~~---~~~k~n~VRL~Fqv~i~~~g~g~-~~~l-~V~S~PI~dsK~~--~~l~I~R~S~~Sgsv~GG 275 (336)
++ ...++|+|||||||||+++ +|+ ++.| ||+|+||||+|++ ++|+|||||++||||+||
T Consensus 147 ~~t~~~~~~i~~~ak~~~k~~dln~VRL~Fq~fl~~~-~G~~t~~l~pV~S~PI~d~k~~~a~eL~I~r~s~~sg~v~GG 225 (325)
T 1nfk_A 147 QLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFLPDS-TGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGG 225 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCTTEEEEEEEEEEECS-SSCEEEECCCEECCCEECTTSTTSCCCCEEEESCSCEESSCC
T ss_pred ccchhhhhhhHHHHHhhhhcccCceEEEEEEEEEECC-CCcEeeecCCeEecceecCCCCCCCCCeEEEecCCccccCCC
Confidence 01 0123489999999999998 454 6777 7999999999995 899999999999999999
Q ss_pred ceeeeecCcccccccccCCCCCcceEeeccC-CCceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 276 AELFKVSPTDTIAGKGLLQDHPDAILGKNFL-KDTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 276 eEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
+||| ||||||+ +||+|+|||+++++.+||++|+|++.++|
T Consensus 226 ~Ev~--------------------LLc~kv~K~Di~VrF~E~~~~g~~WE~~g~f~~~Dvh 266 (325)
T 1nfk_A 226 EEIY--------------------LLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVH 266 (325)
T ss_dssp CEEE--------------------EEESCCCTTTEEEEEEECCCSSCCEEEECBCCGGGBC
T ss_pred CEEE--------------------EEecccccCCCEEEEEEeCCCCCeeEEeeeeCHHHcc
Confidence 9999 9999999 69999999998776699999999999887
No 4
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=100.00 E-value=6.2e-73 Score=535.59 Aligned_cols=205 Identities=29% Similarity=0.518 Sum_probs=181.7
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccC
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKN 164 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~ 164 (336)
|||+|+|||++| |||||+||| |||||+|. ++||||+|||+||+|+|.|+|+|||+|++++||| |+||||+
T Consensus 1 P~l~I~eQP~~r~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~~y~g~a~i~vslvT~d~~~rpHp----H~LvGk~ 76 (286)
T 1ikn_A 1 PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHP----HELVGKD 76 (286)
T ss_dssp CEEEEEECBCCSSCCCEETTTCSCSCCCCBTTCCSSCCCCCEEEEESCCSSCEEEEEEECSSSSCCBCS----SEEESTT
T ss_pred CCCEEEECCccccceeEEeecccCCCCccccccCCCCCcCCEEEEecCCCCEEEEEEEEECCCCCCCcc----eEeeccc
Confidence 799999999997 999999999 69999986 4789999999999999999999999999999999 4599998
Q ss_pred CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhC------CCc---chhhhcc---cCCeeeEEeEEE
Q psy11902 165 STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRF------PED---SSAKNKK---RSTRCRMVFRTT 232 (336)
Q Consensus 165 ~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~------~e~---~~~~~~~---k~n~VRL~Fqv~ 232 (336)
|. +|+| +|.|.|+ +|+++|+||||||+||+|||.++ ++. .+++..+ ++|+||||||||
T Consensus 77 ---c~----~g~~--~v~l~p~-~~~~~f~~lGI~~vkkkdv~~~l~~R~~~~~~p~~~~~~~~~k~idln~VRL~Fq~~ 146 (286)
T 1ikn_A 77 ---CR----DGYY--EADLCPD-RSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVT 146 (286)
T ss_dssp ---EE----TTEE--EEECCTT-CSEEECSCCEEEECCGGGHHHHHHHHHHTTCCTTCCCTTSCCSCCCTTEEEEEEEEE
T ss_pred ---CC----CCcE--EEEECCC-cceEEEeccceeeEeeccHHHHHHHHHHhcCCccccchhhhhccccCcEEEEEEEEE
Confidence 97 8965 5777896 59999999999999999998544 221 1222223 379999999999
Q ss_pred EecCCCCceEec-eeeeeeeecCCCC--CCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccC-CC
Q psy11902 233 IIHPGTRETEVL-QVASHPIMCNQPP--GVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL-KD 308 (336)
Q Consensus 233 i~~~g~g~~~~l-~V~S~PI~dsK~~--~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~D 308 (336)
|+++ +|++++| ||+|+||||+|++ ++|+|||+|++||||+||+||| ||||||+ +|
T Consensus 147 i~~~-~G~~~~L~pV~S~PI~~~ks~~~~eL~I~r~s~~sg~v~GG~Ev~--------------------Llc~kv~K~d 205 (286)
T 1ikn_A 147 VRDP-AGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIF--------------------LLCDKVQKED 205 (286)
T ss_dssp EECS-SSSEEECCCEECCCEECCCC--CCCCCEEEESCSEEETTCCCEEE--------------------EEESCCCTTS
T ss_pred EECC-CCCEEEeCCeEecccccCCCCCCCCCeEEEecCCccccCCCCEEE--------------------EEecccccCC
Confidence 9998 6788888 6999999999985 8999999999999999999999 9999999 69
Q ss_pred ceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 309 TQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 309 ikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
|+|+|||+ +||++|+|++.++|
T Consensus 206 i~V~F~e~-----~WE~~~~f~~~dvh 227 (286)
T 1ikn_A 206 IEVYFTGP-----GWEARGSFSQADVH 227 (286)
T ss_dssp CEEEEEET-----TEEEECBCCGGGBC
T ss_pred CEEEEecc-----ceEEeeecCHHHhc
Confidence 99999993 69999999998887
No 5
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=100.00 E-value=2.3e-72 Score=545.50 Aligned_cols=216 Identities=28% Similarity=0.401 Sum_probs=183.5
Q ss_pred cCCCCeeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccce
Q psy11902 86 VRDPSVYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACR 159 (336)
Q Consensus 86 s~~~~p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhR 159 (336)
....+|||+|+|||++| |||||+||| |||||+|. ++||||+|||+||+|+|.|+|+|||+|++++||| |+
T Consensus 37 ~~~~~p~L~I~eQPkqr~~RfRYe~EG~s~Gsi~G~~S~~~~kt~PtVkl~~y~g~a~i~vslvT~d~~~~pHp----H~ 112 (365)
T 1svc_P 37 PTADGPYLQILEQPKQRGFRFRYVAEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHA----HS 112 (365)
T ss_dssp -----CEEEEEECBCSBSCCCEEGGGCSTTCCCCBSCCCTTCCCCCEEEEESCCSSCEEEEEEECCSSSCCBCS----SE
T ss_pred CCCCCceEEEEECCccccceeEEeeccCCCCCccccccCCcCCcCCEEEEecCCCCEEEEEEEEEcCCCCCccc----eE
Confidence 44578999999999998 999999999 79999875 4689999999999999999999999999999998 56
Q ss_pred ecccCCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCc--c--------h--------------
Q psy11902 160 VAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPED--S--------S-------------- 215 (336)
Q Consensus 160 LvGK~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~--~--------~-------------- 215 (336)
||||+ |. +|+|. |.|.| ++|+++|+||||||+||+||++++..+ + +
T Consensus 113 LvGK~---c~----~gv~~--v~v~P-~~m~~~f~nlGI~~vrkkdv~~~L~~r~~~~~~~~~~~g~~~~~~~~~~~~~~ 182 (365)
T 1svc_P 113 LVGKH---CE----DGICT--VTAGP-KDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHPDLAYLQAEG 182 (365)
T ss_dssp EEETT---EE----TTEEE--EECCT-TCCEEECCSEEEEECCGGGHHHHHHHHHHHHHHHTSSHHHHTCGGGGGGTTCC
T ss_pred ecccc---CC----CccEE--EEeCC-CCceEEecccceEEEeechHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99999 97 79655 66779 689999999999999999997443111 0 0
Q ss_pred -----------------hhhcc---cCCeeeEEeEEEEecCCCCceEec-eeeeeeeecCCCC--CCCceeecCCCcccc
Q psy11902 216 -----------------AKNKK---RSTRCRMVFRTTIIHPGTRETEVL-QVASHPIMCNQPP--GVPEICKKSLTSCPV 272 (336)
Q Consensus 216 -----------------~~~~~---k~n~VRL~Fqv~i~~~g~g~~~~l-~V~S~PI~dsK~~--~~l~I~R~S~~Sgsv 272 (336)
++... ++|+|||||||||+++++..++.| ||+|+||||+|++ ++|+|||||++||||
T Consensus 183 ~~~r~~t~~e~~~~~~~ak~~~k~~dLn~VRL~Fqafl~~~~G~~t~~l~pV~S~PI~d~K~~~a~eL~I~R~s~~sgsv 262 (365)
T 1svc_P 183 GGDRQLGDREKELIRQAALQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCV 262 (365)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHTTCCTTEEEEEEEEEEECSSSCEEEECCCEEEEEEECTTSGGGCCCCEEEESCSEEET
T ss_pred ccccccchhhhhhhhHHHHhhhhcccCceEEEEEEEEEECCCCcEeeecCCeEecceecCCCCCCCCCeEEEecCCcccc
Confidence 01112 249999999999999843336666 5999999999995 899999999999999
Q ss_pred CCCceeeeecCcccccccccCCCCCcceEeeccC-CCceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 273 TGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL-KDTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 273 ~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
+||+||| ||||||+ +||+|+|||+++++.+||++|+|++.++|
T Consensus 263 ~GG~Ev~--------------------LLc~Kv~K~DikVrF~E~~~~g~~WE~~g~f~~~DVH 306 (365)
T 1svc_P 263 TGGEEIY--------------------LLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVH 306 (365)
T ss_dssp TCCCEEE--------------------EEESSCCGGGCEEEEEEEETTTEEEEEECBCCGGGEE
T ss_pred CCCCEEE--------------------EEecccccCCCEEEEEEeCCCCCeeEEeeeeChHHhc
Confidence 9999999 9999999 69999999998776699999999998886
No 6
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
Probab=100.00 E-value=5.4e-72 Score=526.78 Aligned_cols=206 Identities=26% Similarity=0.465 Sum_probs=178.3
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccC
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKN 164 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~ 164 (336)
|||+|+|||++| |||||+||| |||||+|. ++||||+|||+||+|+|+|+|+|||+|++++|||| +||||+
T Consensus 1 P~l~I~eQP~q~~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtV~l~~y~g~a~i~vslvt~d~p~~pHpH----~LvGk~ 76 (275)
T 1gji_A 1 PYIEIFEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNKTFPSIQILNYFGKVKIRTTLVTKNEPYKPHPH----DLVGKD 76 (275)
T ss_dssp CEEEEEECBCCSSBCCEEGGGCSCCCCCCBSSCCSTTCCCCEEEEETCCSCEEEEEEEECSSSSCCBCSS----EEESTT
T ss_pred CCCEEEECCccccceeEEeeccccCCCccccccCCCCCcCCEEEEecCCCCEEEEEEEEEeCCCCCccee----Eecccc
Confidence 799999999998 999999999 78999875 35899999999999999999999999999999994 599998
Q ss_pred CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCc-----c----hhhh-----cccCCeeeEEeE
Q psy11902 165 STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPED-----S----SAKN-----KKRSTRCRMVFR 230 (336)
Q Consensus 165 ~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~-----~----~~~~-----~~k~n~VRL~Fq 230 (336)
|. +|+| +|.|.|+ +|+++|+||||||+||+|||+++..+ + +... ..++|+||||||
T Consensus 77 ---c~----~g~~--~v~v~p~-~~~~~f~~lGI~~vrkkdv~~~l~~r~~~~~~p~~~~~~~~~~~~~~dln~VRL~Fq 146 (275)
T 1gji_A 77 ---CR----DGYY--EAEFGPE-RRVLSFQNLGIQCVKKKDLKESISLRISKKINPFNVPEEQLHNIDEYDLNVVRLCFQ 146 (275)
T ss_dssp ---EE----TTEE--EEEECSC-CSCEECCCCEEEECCTTTHHHHHHHHHTTTCCTTCCCGGGGGCCTTCCTTEEEEEEE
T ss_pred ---CC----CceE--EEEECCC-CcEEEEeeeeeEEEeehhHHHHHHHHHhhccCCcCCCHHHhhhhhhccCceEEEEEE
Confidence 97 8965 5667796 89999999999999999998754211 1 1111 124599999999
Q ss_pred EEEecCCCCceEec-eeeeeeeecCCCC--CCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccC-
Q psy11902 231 TTIIHPGTRETEVL-QVASHPIMCNQPP--GVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL- 306 (336)
Q Consensus 231 v~i~~~g~g~~~~l-~V~S~PI~dsK~~--~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~- 306 (336)
|||+++++..+..| ||+|+||||+|++ ++|+|||||++||||+||+||| ||||||+
T Consensus 147 ~fi~~~~G~~~~~l~pV~S~pI~d~ks~~~~eL~I~r~s~~sg~v~GG~Ev~--------------------LLc~kv~K 206 (275)
T 1gji_A 147 AFLPDEHGNYTLALPPLISNPIYDNRAPNTAELRICRVNKNCGSVKGGDEIF--------------------ILCDKVQK 206 (275)
T ss_dssp EEEECSSSSEEEECCCEECCCEEBTTSTTTSCCCEEEESCSEEETTCCCEEE--------------------EEESCCCG
T ss_pred EEEECCCCCCccccCCeEccccccCCCCCCCCCEEEEeeCCccccCCCCEEE--------------------EEeccccc
Confidence 99999843334555 7999999999997 8999999999999999999999 9999999
Q ss_pred CCceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 307 KDTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 307 ~DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
+||+|+|||+ +||++|+|++..+|
T Consensus 207 ~di~VrF~e~-----~We~~~~f~~~Dvh 230 (275)
T 1gji_A 207 DDIEVRFVLD-----NWEAKGSFSQADVH 230 (275)
T ss_dssp GGCEEEEEET-----TEEEECBCCGGGEE
T ss_pred CCCEEEEEcc-----ceeeccccChhhhc
Confidence 5999999994 69999999877665
No 7
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A
Probab=100.00 E-value=1.3e-71 Score=526.34 Aligned_cols=206 Identities=27% Similarity=0.435 Sum_probs=177.7
Q ss_pred CeeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceeccc
Q psy11902 90 SVYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGK 163 (336)
Q Consensus 90 ~p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK 163 (336)
+|||+|+|||++| |||||+||| |||||+|. ++||||+|||+||+|+|.|+|+|||+|++++|||| +||||
T Consensus 1 gP~l~I~eQP~~r~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~~y~g~a~v~v~lvT~d~~~rpHpH----~LvGk 76 (285)
T 1a3q_A 1 GPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVDLVTHSDPPRAHAH----SLVGK 76 (285)
T ss_dssp CCEEEEEECBCSSSBCCEETTTCSCSCCCCBSCCCTTCCCCCEEEEETCCSSEEEEEEEECSSSSCCBCSS----EEEET
T ss_pred CCccEEEECCccccceeEEeeccCCCCCCcccccCCCCCcCCEEEEeCCCCcEEEEEEEEecCCCCCccce----EeeCc
Confidence 5899999999997 999999999 79999774 46899999999999999999999999999999995 59999
Q ss_pred CCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchh----hhCCCc------chh------------hhc--
Q psy11902 164 NSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVE----QRFPED------SSA------------KNK-- 219 (336)
Q Consensus 164 ~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE----~r~~e~------~~~------------~~~-- 219 (336)
+ |.+ +|+|. |.|.| ++|+++|+||||||+||+||+ +|+++. ..+ +..
T Consensus 77 ~---c~~---~gv~~--v~~~p-~~m~~~f~~lGI~~v~kkdv~~~l~~R~~~~~~~~~~~~~~~~~~~~l~~~a~~~~k 147 (285)
T 1a3q_A 77 Q---CSE---LGICA--VSVGP-KDMTAQFNNLGVLHVTKKNMMGTMIQKLQRQRLRSRPQGLTEAEQRELEQEAKELKK 147 (285)
T ss_dssp T---BCT---TSCEE--EEECS-SCCEEECCCEEEEECCTTTHHHHHHHHHHHHHTTTSCSCCCHHHHHHHHHHHHHHHT
T ss_pred c---ccc---CceEE--EEeCC-CCcEEEEcccceEEeeechHHHHHHHHHhhhcccccCCCCCchhhhhhhHHhhhhhh
Confidence 9 743 89776 55669 689999999999999999994 454331 011 111
Q ss_pred -ccCCeeeEEeEEEEecCCCCceEeceeeeeeeecCCCC--CCCceeecCCCccccCCCceeeeecCcccccccccCCCC
Q psy11902 220 -KRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPP--GVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDH 296 (336)
Q Consensus 220 -~k~n~VRL~Fqv~i~~~g~g~~~~l~V~S~PI~dsK~~--~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~ 296 (336)
.++|+|||||||||+ ...++||+|+||||+|++ ++|+|||||++||||+||+|||
T Consensus 148 ~~dln~VRL~Fq~fi~-----t~~l~pV~S~pI~d~k~~~~~eL~I~r~s~~sg~v~GG~Ev~----------------- 205 (285)
T 1a3q_A 148 VMDLSIVRLRFSAFLR-----SLPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVY----------------- 205 (285)
T ss_dssp TCCTTEEEEEEEEEEC-----CEECCCEECCCEEBTTSTTTSCCCEEEESCSEEETTCCCEEE-----------------
T ss_pred ccccCeEEEEEEEEec-----ccccCceEecceecCCCCCCCCCeEEEecCCccccCCCCEEE-----------------
Confidence 234899999999998 133448999999999995 7999999999999999999999
Q ss_pred CcceEeeccC-CCceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 297 PDAILGKNFL-KDTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 297 ~~~LLc~kv~-~DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
||||||+ +||+|+|||+++++ ||++|+|++.++|
T Consensus 206 ---Llc~kv~K~Di~V~F~E~~~~g--WE~~~~f~~~dvh 240 (285)
T 1a3q_A 206 ---LLCDKVQKDDIEVRFYEDDENG--WQAFGDFSPTDVH 240 (285)
T ss_dssp ---EEESSCCTTTEEEEEEECSSSC--EEEECBCCGGGEE
T ss_pred ---EEeccccCCCCEEEEEecCCCC--CEEeeEeCHHHcc
Confidence 9999999 58999999988766 9999999999988
No 8
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A
Probab=100.00 E-value=2.4e-71 Score=525.17 Aligned_cols=212 Identities=24% Similarity=0.380 Sum_probs=180.6
Q ss_pred ccCCCCeeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEE--EEeeCCCCCCCCcccc
Q psy11902 85 SVRDPSVYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEV--FIGTDQGKIAPHMFYQ 156 (336)
Q Consensus 85 ps~~~~p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V--~lvT~d~~~~PH~f~q 156 (336)
|....+|||+|+|||++| |||||+||| |||||+|. ++||||+|||+||+|+|.|+| +|||+|++++||||
T Consensus 7 ~~~~~~p~L~I~eQP~~r~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~gy~g~~~v~V~~~lvt~d~p~rpHpH-- 84 (288)
T 2v2t_A 7 PGPCPRPYLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTQPAIELRDCGGLREVEVTACLVWKDWPHRVHPH-- 84 (288)
T ss_dssp ---CCCCEEEESSCBCSSCCCCEEGGGCCCSCCCCBSSCCTTSCCCCCEEEESCTTCSCEEEEECCBCSSSSCCBCSS--
T ss_pred CCCCCCCeEEEEECCCcCcceeEEeecCCCCccccccccCCCCCcCCEEEEeccCCCceEEEEEEEEEcCCCCCcCce--
Confidence 455678999999999997 999999999 59999885 358999999999999886655 58999989999995
Q ss_pred cceecccCCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCC-----cchhhh-------cccCCe
Q psy11902 157 ACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPE-----DSSAKN-------KKRSTR 224 (336)
Q Consensus 157 vhRLvGK~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e-----~~~~~~-------~~k~n~ 224 (336)
+||||+ |. +|+ ++|.|.|+++|+++|+||||||+||+|||+++.. .+.+.. ..++|+
T Consensus 85 --~LvGk~---c~----~gv--~~v~l~p~~~~~~~f~~lGI~~vrkkdve~~L~~r~~~~~~p~~~~~~~~~~~idln~ 153 (288)
T 2v2t_A 85 --SLVGKD---CT----DGV--CRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAIERKIQLGIDPYNAGSLKNHQEVDMNV 153 (288)
T ss_dssp --EEESTT---CS----SSC--EEEEECTTTCSCCCCSSCEEEECCTTTHHHHHHHHHHTTCCSSCCCSSCCCSSCCSSE
T ss_pred --EecCcc---CC----Cce--EEEEeCCCCCcEEEEeeeeeEEEEehhHHHHHHHHHHhccCcccccccccccccCCCe
Confidence 599998 97 895 5577779889999999999999999999866632 111111 123799
Q ss_pred eeEEeEEEEecCCCCceEec-eeeeeeeecCCCC--CCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceE
Q psy11902 225 CRMVFRTTIIHPGTRETEVL-QVASHPIMCNQPP--GVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAIL 301 (336)
Q Consensus 225 VRL~Fqv~i~~~g~g~~~~l-~V~S~PI~dsK~~--~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LL 301 (336)
|||||||||+++ +|++..| ||+|+||||+|++ ++|+|||+|++||||+||+||| ||
T Consensus 154 VRL~Fq~~i~~~-~G~~~~l~pV~S~PI~~~ks~~~~eL~I~r~s~~sgsv~GG~Ev~--------------------LL 212 (288)
T 2v2t_A 154 VRICFQASYRDQ-QGHLHRMDPILSEPVYDKKSTNTSELRICRINKESGPCTGGEELY--------------------LL 212 (288)
T ss_dssp EBCCBCEEECCS-SSCCEECCCBCCCCEECTTSGGGSCCCBCCCSCSCCCSSCCCEEE--------------------EE
T ss_pred EEEEEEEEEECC-CCCEEEeCCeEecccccCCCCCCCCCeEEEeeCCccccCCCCEEE--------------------EE
Confidence 999999999998 4555556 7999999999996 8999999999999999999999 99
Q ss_pred eeccC-CCceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 302 GKNFL-KDTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 302 c~kv~-~DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
||||+ +||+|+||| .+||++|+|++..+|
T Consensus 213 c~kv~K~dikV~F~e-----~~WE~~~~f~~~Dvh 242 (288)
T 2v2t_A 213 CDKVQKEDISVVFST-----ASWEGRADFSQADVH 242 (288)
T ss_dssp BSSCCTTSEEEEEEC-----SSCEEECCCCGGGEE
T ss_pred ecccccCCCEEEEEe-----cceEEeeEeChhhcc
Confidence 99999 799999998 689999999988775
No 9
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-67 Score=529.78 Aligned_cols=206 Identities=29% Similarity=0.496 Sum_probs=180.5
Q ss_pred CeeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceeccc
Q psy11902 90 SVYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGK 163 (336)
Q Consensus 90 ~p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK 163 (336)
.|||+|+|||++| |||||+||| |||||+|. ++||||||||+||+|+|+|+|+|||+|++++|||| +||||
T Consensus 1 ~p~l~I~eQP~~~~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~~y~g~a~i~vslvT~d~~~~pH~H----~LvGk 76 (540)
T 2o61_A 1 MGYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPH----ELVGK 76 (540)
T ss_dssp -CEEEEEECBCCSSCCCEETTTCSCCCCCCBTTCCSSCCCCCEEEEETCCSSCEEEEEEECSSSSCCBCSS----EEEST
T ss_pred CCCCEEEECCCCCcceeEeecCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCEEEEEEEEECCCCCCCcce----Eeecc
Confidence 4899999999998 999999999 69999775 46899999999999999999999999999999994 69999
Q ss_pred CCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCC---------cchhh---hcccCCeeeEEeEE
Q psy11902 164 NSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPE---------DSSAK---NKKRSTRCRMVFRT 231 (336)
Q Consensus 164 ~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e---------~~~~~---~~~k~n~VRL~Fqv 231 (336)
+ |. +|+| +|.|.|+ +|+++|+||||||+||+|||+++.+ ..+++ .+.++|+|||||||
T Consensus 77 ~---c~----~g~~--~v~l~p~-~~~~~f~nlGI~~vkkkdv~~~L~~R~~~~~~p~~~~~~~~~~~~dln~VRL~Fq~ 146 (540)
T 2o61_A 77 D---CR----DGFY--EAELCPD-RCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQV 146 (540)
T ss_dssp T---EE----TTEE--EEECCTT-CSEEECCCCEEEECCGGGHHHHHHHHHHTTCCTTCCCTTTTCSCCCTTEEEEEEEE
T ss_pred c---CC----CCcE--EEEeCCC-cceEEEeccceeeeccccHHHHHHHHHhhcCCccccchhhhhccccCcEEEEEEEE
Confidence 8 97 8965 6777796 4999999999999999999855421 11221 23358999999999
Q ss_pred EEecCCCCceEece-eeeeeeecCCCC--CCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccC-C
Q psy11902 232 TIIHPGTRETEVLQ-VASHPIMCNQPP--GVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL-K 307 (336)
Q Consensus 232 ~i~~~g~g~~~~l~-V~S~PI~dsK~~--~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~ 307 (336)
||+++ +|++++|+ |+|+||||+|++ ++|+|||+|++||||+||+||| ||||||+ +
T Consensus 147 fi~~~-~G~~~~L~pV~S~PI~d~k~~~~~eL~I~r~s~~sgsv~GG~Ev~--------------------LLc~kv~K~ 205 (540)
T 2o61_A 147 TVRDP-SGRPLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIF--------------------LLCDKVQKE 205 (540)
T ss_dssp EEESS-SSSEEECCCEECCCEECSSSTTSSCCCEEEESCSEEETTCCCEEE--------------------EEESSCBTT
T ss_pred EEECC-CCCEEecCCeeccceecCCCCCCCCCeEEEecCCccccCCCCeEE--------------------EEecccccC
Confidence 99998 67888886 999999999986 7999999999999999999999 9999999 5
Q ss_pred CceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 308 DTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 308 DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
||+|+|||+ +||++|+|++..+|
T Consensus 206 DikVrF~e~-----~WE~~a~f~~~Dvh 228 (540)
T 2o61_A 206 DIEVYFTGP-----GWEARGSFSQADVH 228 (540)
T ss_dssp BCEEEEEET-----TEEEECBCCGGGEE
T ss_pred CcEEEEecc-----cceeccccChhhhc
Confidence 999999983 79999999875544
No 10
>1bvo_A Transcription factor gambif1; REL protein, morphogen, immunity, development, insects, complex (transcription factor/DNA); HET: DNA; 2.70A {Anopheles gambiae} SCOP: b.2.5.3
Probab=100.00 E-value=2.4e-52 Score=371.84 Aligned_cols=152 Identities=29% Similarity=0.440 Sum_probs=127.2
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCC-CCCCcccccceeccc
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGK-IAPHMFYQACRVAGK 163 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~-~~PH~f~qvhRLvGK 163 (336)
|||+|+|||++| |||||+||| |||||+|. ++||||||||+||.|+|+|+|+|||+|++ ++||||. ||||
T Consensus 1 P~l~I~EQP~~rg~RFRY~cEg~shGsipG~~S~~~~KT~PtVki~ny~G~a~I~vslVT~d~p~~~pHpH~----LVgk 76 (175)
T 1bvo_A 1 PYVEITEQPHPKALRFRYECEGRSAGSIPGVNTTAEQKTFPSIQVHGYRGRAVVVVSCVTKEGPEHKPHPHN----LVGK 76 (175)
T ss_dssp CEEEEEECBCTTSCCCBCGGGCSCCCCCCBTTCCSSSCCCCEEEEESCCSCEEEEEEEECSSSTTCCBCSCE----EECT
T ss_pred CCEEEEecCCcccceeEecccCCCCCCccCccCCCCCccCCEEEEecCcCCeEEEEEEEeCCCCCcCCcccc----ccCC
Confidence 799999999999 999999999 99999885 46899999999999999999999999988 9999955 9999
Q ss_pred CCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCc---------chhh-----hcccCCeeeEEe
Q psy11902 164 NSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPED---------SSAK-----NKKRSTRCRMVF 229 (336)
Q Consensus 164 ~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~---------~~~~-----~~~k~n~VRL~F 229 (336)
+ .|. +|+|.++ +.| .+|+++|+||||||++||||++.+.++ .++. ...++|.|||||
T Consensus 77 ~--~c~----~Gvc~v~--v~p-~~~~~~F~nLGIq~v~KK~v~e~L~~R~~~~~~pf~~g~~~~~~~~~idLn~VRLcF 147 (175)
T 1bvo_A 77 E--GCK----KGVCTVE--INS-TTMSYTFNNLGIQCVKKKDVEEALRLRQEIRVDPFRTGFGHAKEPGSIDLNAVRLCF 147 (175)
T ss_dssp T--TEE----TTEEEEE--CCT-TTCEEECSSCEEECCCHHHHHHHHHHHHHHTCCTTSCTTGGGTSGGGSCTTEEEEEE
T ss_pred C--CCC----CCcEEEE--eCC-CccEEEEcCCceEEEehhhHHHHHHHHHHhccCCcccchhhhhhhhccccceEEEEE
Confidence 8 587 8987755 457 579999999999999999997655321 1111 123469999999
Q ss_pred EEEEecCCCCc-eEec-eeeeeeeecCC
Q psy11902 230 RTTIIHPGTRE-TEVL-QVASHPIMCNQ 255 (336)
Q Consensus 230 qv~i~~~g~g~-~~~l-~V~S~PI~dsK 255 (336)
||||+++.+|. +..| ||+|+||||+|
T Consensus 148 qafl~d~~~G~~t~~l~PVvS~pIyd~K 175 (175)
T 1bvo_A 148 QVFLEGQQRGRFTEPLTPVVSDIIYDKK 175 (175)
T ss_dssp EEEEECSSTTCEEEECCCEECCCEECCC
T ss_pred EEEeecCCCCeEcccCCCeEccccccCC
Confidence 99999842343 4555 59999999997
No 11
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=99.82 E-value=6.2e-21 Score=158.20 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=51.1
Q ss_pred CCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccC-CCceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 258 GVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL-KDTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 258 ~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
++|+|||+|++||||+||+||| |||+||+ +||+|||||+++|+.+||++|+||+..+|
T Consensus 2 s~l~I~r~s~~s~~v~GG~Ev~--------------------Llc~kv~K~dikV~F~E~~~~g~~WE~~~~f~~~dvh 60 (106)
T 1u36_A 2 SNLKIVRMDRTAGCVTGGEEIW--------------------LLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVH 60 (106)
T ss_dssp -CCCEEEESCSEEETTCCCEEE--------------------EEESCCCTTSCEEEEEECC----CEEEECBCCGGGEE
T ss_pred CCCEEEEeeCCccccCCCCEEE--------------------EEeccccCCCCEEEEEEeCCCCCceEEeeecCHHHcc
Confidence 6899999999999999999999 9999999 59999999998888999999999998886
No 12
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.8e-21 Score=159.23 Aligned_cols=63 Identities=32% Similarity=0.559 Sum_probs=58.5
Q ss_pred CCCCCCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEEEEeeC-CccCeeEeEeCCcc
Q psy11902 254 NQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVA-DICQWEESVLPDKE 332 (336)
Q Consensus 254 sK~~~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF~E~~~-~~~~WEa~a~~dk~ 332 (336)
+.|++.|+|||+|++||||+||+||| |||+||++||+|+|||+++ |+.+||++|+||++
T Consensus 3 ~~a~~~P~I~k~s~~s~~v~GG~Ev~--------------------Ll~~k~~kd~kV~F~E~~~dG~~~WE~~a~f~~d 62 (114)
T 2yrp_A 3 SGSSGLPQVEAYSPSACSVRGGEELV--------------------LTGSNFLPDSKVVFIERGPDGKLQWEEEATVNRL 62 (114)
T ss_dssp SCCCSCCEEEEEESSCEETTCCSEEE--------------------EEEESCCTTCEEEEECBCTTSCBCCCCBCCBCTT
T ss_pred CCCCCCCEEEEecCcccccCCCCEEE--------------------EEecccCCCCEEEEEEECCCCCcceEEeeEEChH
Confidence 45679999999999999999999999 9999999999999999875 56899999999999
Q ss_pred ccCC
Q psy11902 333 FLQQ 336 (336)
Q Consensus 333 ~~~~ 336 (336)
.+||
T Consensus 63 ~~~q 66 (114)
T 2yrp_A 63 QSNE 66 (114)
T ss_dssp TCBT
T ss_pred Hccc
Confidence 8887
No 13
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=99.81 E-value=2e-20 Score=157.99 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=55.2
Q ss_pred CCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccC-CCceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 258 GVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL-KDTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 258 ~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
++|+|||+|++||||+||+||| |||+||+ +||+|+|||+++|+.+||++|+|+++.+|
T Consensus 2 s~l~I~r~s~~s~~v~GG~Ev~--------------------Llc~kv~K~dikV~F~e~~~~g~~WE~~~~f~~~dvh 60 (119)
T 1ikn_C 2 SNLKIVRMDRTAGCVTGGEEIY--------------------LLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVH 60 (119)
T ss_dssp CCCCEEEESCSEEETTCCCEEE--------------------EEESCCCTTSEEEEEEEECTTSCEEEEECCCCGGGEE
T ss_pred CCCEEEEeeCCccccCCCCEEE--------------------EEeccccCCCCEEEEEEeCCCCCceEEeEEeChhhcc
Confidence 6899999999999999999999 9999999 69999999998888999999999998876
No 14
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=99.75 E-value=1e-18 Score=146.77 Aligned_cols=54 Identities=24% Similarity=0.387 Sum_probs=49.5
Q ss_pred CCCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccC-CCceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 257 PGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL-KDTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 257 ~~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
+++|+|||+|++||||+||+||| ||||||+ +||+|+|||+ +||++|+|++..+|
T Consensus 1 t~~L~I~r~s~~sg~v~GG~Ev~--------------------LLc~kv~K~Di~VrF~e~-----~WE~~g~f~~~Dvh 55 (114)
T 1my7_A 1 TAELKICRVNRRSGSCLGGDEIF--------------------LLCDKVQKEDIEVYFTGP-----GWEARGSFSQADVH 55 (114)
T ss_dssp CCSCCEEEESCSEEETTCCCEEE--------------------EEESCCCTTSCEEEEEET-----TEEEECBCCGGGBC
T ss_pred CCccEEEEecCCceecCCCcEEE--------------------EEecccccCCCEEEEEcc-----CeEEecccChhhcc
Confidence 57999999999999999999999 9999999 5999999994 69999999966655
No 15
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=99.74 E-value=8.3e-19 Score=146.46 Aligned_cols=59 Identities=27% Similarity=0.452 Sum_probs=51.9
Q ss_pred cCCC--CCCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccC-CCceEEEEEeeCCccCeeEeEeC
Q psy11902 253 CNQP--PGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL-KDTQVKFQKMVADICQWEESVLP 329 (336)
Q Consensus 253 dsK~--~~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~DikVrF~E~~~~~~~WEa~a~~ 329 (336)
++|+ +++|+|||+|++||||+||+||| ||||||+ +||+|||||+ +||++|+|
T Consensus 4 ~~ks~~~~~L~I~r~s~~sg~v~GG~Ev~--------------------LLc~kv~K~Di~V~F~e~-----~WE~~~~f 58 (110)
T 1zk9_A 4 RGSHMNTSELRICRINKESGPCTGGEELY--------------------LLCDKVQKEDISVVFSTA-----SWEGRADF 58 (110)
T ss_dssp ETTEEECTTSCEEEESCSCCCTTCCCCCC--------------------EEESCCCTTSCCCEEEET-----TEEEECCC
T ss_pred cccCCCCCCCEEEEecCCccccCCCCEEE--------------------EEecccccCCcEEEEech-----heeecccc
Confidence 5666 48999999999999999999999 9999999 5999999984 79999999
Q ss_pred Cc-cccCC
Q psy11902 330 DK-EFLQQ 336 (336)
Q Consensus 330 dk-~~~~~ 336 (336)
.. +..||
T Consensus 59 ~~~Dvh~Q 66 (110)
T 1zk9_A 59 SQADVHRQ 66 (110)
T ss_dssp CGGGCCCC
T ss_pred Cccccccc
Confidence 65 44444
No 16
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=99.72 E-value=5e-18 Score=146.28 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=49.6
Q ss_pred CCCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccC-CCceEEEEEeeCCccCeeEeEeCCccccC
Q psy11902 257 PGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL-KDTQVKFQKMVADICQWEESVLPDKEFLQ 335 (336)
Q Consensus 257 ~~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~DikVrF~E~~~~~~~WEa~a~~dk~~~~ 335 (336)
+++|+|||||++||||+||+||| ||||||+ +||+|||||+ .||++|+|++..+|
T Consensus 1 t~~L~I~r~s~~sg~v~GG~Ev~--------------------LLceKv~K~Di~VrF~e~-----~WE~~g~f~~~dVh 55 (136)
T 1oy3_C 1 TAELKICRVNRNSGSCLGGDEIF--------------------LLCDKVQKEDIEVYFTGP-----GWEARGSFSQADVH 55 (136)
T ss_dssp CCCCCEEEESCSEEETTCCCEEE--------------------EEESCCCTTSCEEEEEET-----TEEEECBCCGGGBC
T ss_pred CCccEEEEecCCccccCCCcEEE--------------------EEccccccCCCEEEEEcc-----CeEEecccChhhee
Confidence 57999999999999999999999 9999999 6999999983 69999999976655
No 17
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=94.21 E-value=0.033 Score=48.25 Aligned_cols=44 Identities=36% Similarity=0.536 Sum_probs=38.4
Q ss_pred CCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEEEEeeCCccCeeEe
Q psy11902 259 VPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEES 326 (336)
Q Consensus 259 ~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF~E~~~~~~~WEa~ 326 (336)
.|.|.+++.++|+.+||.+|+ |+|+||-++.+|.|=. ...|-..
T Consensus 5 ~P~I~~i~P~eG~~~GG~~V~--------------------I~G~nF~~GlqV~FG~----t~~w~e~ 48 (138)
T 3muj_A 5 TPCIKAISPSEGWTTGGATVI--------------------IIGDNFFDGLQVVFGT----MLVWSEL 48 (138)
T ss_dssp CCEEEEEESSEEETTCCCEEE--------------------EEEESCCTTCEEEETT----EEECEEE
T ss_pred CCceeEecCCCCCccCCeEEE--------------------EeCCCcccCCEEEECC----eeeeeee
Confidence 478999999999999999999 9999999999999953 4467653
No 18
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=93.94 E-value=0.1 Score=51.51 Aligned_cols=44 Identities=36% Similarity=0.532 Sum_probs=39.0
Q ss_pred CCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEEEEeeCCccCeeEe
Q psy11902 259 VPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEES 326 (336)
Q Consensus 259 ~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF~E~~~~~~~WEa~ 326 (336)
.|.|.+++.++|+.+||.+|+ |+|++|-++.||.|= +..+|-.+
T Consensus 231 tP~IkaIsPnEG~~tGG~tV~--------------------IiGenFf~GLQVvFG----tt~vWsel 274 (402)
T 3mlp_A 231 TPCIKAISPSEGWTTGGATVI--------------------IIGDNFFDGLQVIFG----TMLVWSEL 274 (402)
T ss_dssp CCEEEECSSCEECTTCCCEEE--------------------EEEECCCTTCEEEET----TEEECEEE
T ss_pred CcceEEecCCCCCccCCeEEE--------------------EeCCCcccCCEEEEc----cEeeeeEE
Confidence 589999999999999999999 999999999999995 34467654
No 19
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=41.76 E-value=22 Score=28.13 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.5
Q ss_pred CCCceeecCCCccccCCCceee
Q psy11902 258 GVPEICKKSLTSCPVTGGAELF 279 (336)
Q Consensus 258 ~~l~I~R~S~~Sgsv~GGeEv~ 279 (336)
+-..|..+|-..|+..||..|.
T Consensus 5 ~~~~Itd~sP~~gp~sGGTkv~ 26 (95)
T 2cxk_A 5 SSGMVTDYSPEWSYPEGGVKVL 26 (95)
T ss_dssp CCSCCCEEECSEECTTCCCEEE
T ss_pred CcEEEEEECCCcccCCCCEEEE
Confidence 4688999999999999999998
No 20
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=24.67 E-value=55 Score=34.15 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=20.0
Q ss_pred CCceeecCCCccccCCCceee
Q psy11902 259 VPEICKKSLTSCPVTGGAELF 279 (336)
Q Consensus 259 ~l~I~R~S~~Sgsv~GGeEv~ 279 (336)
.|+|..++-.+||..||..|-
T Consensus 541 ~P~ItsI~P~~Gp~~GGT~vT 561 (727)
T 2uzx_B 541 LPAIYKVFPNSAPLEGGTRLT 561 (727)
T ss_dssp CCEEEEEESSBCCSSCCCEEE
T ss_pred CCEEeccCCCcccCCCCEEEE
Confidence 689999999999999999999
No 21
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=20.35 E-value=81 Score=31.78 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=29.8
Q ss_pred CCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEE
Q psy11902 258 GVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKF 313 (336)
Q Consensus 258 ~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF 313 (336)
..|.|..+|...+ .+|++|. |.|++|....+|.|
T Consensus 112 PaPtITSISpe~~--~aGd~VT--------------------ItGsNF~~iskV~F 145 (439)
T 3orj_A 112 AAPSITKISNCMP--NVGEPII--------------------VYGSGLTEIAKVVF 145 (439)
T ss_dssp SCCEEEEESCSSC--CTTCEEE--------------------EEEECCTTCCEEEE
T ss_pred CCCEEEEeCCCCC--CCCCEEE--------------------EEccCCCceeEEEE
Confidence 4689999988765 6899999 99999988889998
Done!