RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11902
(336 letters)
>d1imhc2 b.2.5.3 (C:188-367) T-cell transcription factor NFAT5
(TONEBP), DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 180
Score = 194 bits (494), Expect = 3e-62
Identities = 91/167 (54%), Positives = 114/167 (68%), Gaps = 4/167 (2%)
Query: 92 YLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAP 151
L+I QPE QHRARY TEGSRG+VKD++ GFP VKL G+N P L+VF+G D G++ P
Sbjct: 18 ELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVGNDSGRVKP 77
Query: 152 HMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFP 211
H FYQACRV G+N+TPC E +GT +I++ DPS +M++ DCVGILK RN DVE R
Sbjct: 78 HGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKLRNADVEARIG 137
Query: 212 EDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPG 258
A +KK+STR R+VFR I+ T LQ S PI+C QP G
Sbjct: 138 I---AGSKKKSTRARLVFRVNIMRKDGS-TLTLQTPSSPILCTQPAG 180
>d1p7hl2 b.2.5.3 (L:393-575) T-cell transcription factor NFAT1
(NFATC), DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 183
Score = 163 bits (414), Expect = 3e-50
Identities = 77/182 (42%), Positives = 99/182 (54%), Gaps = 9/182 (4%)
Query: 81 SISYSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPA--TL 138
S + S L I QP+ HRA Y+TEGSRGAVK +G G PVV+L GY L
Sbjct: 6 EWPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTG-GHPVVQLHGYMENKPLGL 64
Query: 139 EVFIGTDQGKI-APHMFYQACRVAGKN-STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCV 196
++FIGT +I PH FYQ R+ GK +T EK T +++I +P +M T DC
Sbjct: 65 QIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCA 124
Query: 197 GILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQP 256
GILK RN D+E R E +++TR R+VFR I R LQ AS+PI C+Q
Sbjct: 125 GILKLRNADIELRKGE---TDIGRKNTRVRLVFRVHIPESSGR-IVSLQTASNPIECSQR 180
Query: 257 PG 258
Sbjct: 181 SA 182
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB),
N-terminal domain {Chicken (Gallus gallus), C-rel
[TaxId: 9031]}
Length = 175
Score = 121 bits (305), Expect = 3e-34
Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 17/172 (9%)
Query: 92 YLEITSQPEQQ-HRARYQTEGSR-----GAVKDKSGNGFPVVKLVGYNGPATLEVFIGTD 145
Y+EI QP Q+ R RY+ EG G + FP ++++ Y G + + T
Sbjct: 2 YIEIFEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNKTFPSIQILNYFGKVKIRTTLVTK 61
Query: 146 QGKIAPHMFYQACRVAGKNST--PCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKER- 202
PH + GK+ + ++ + D + R
Sbjct: 62 NEPYKPH----PHDLVGKDCRDGYYEAEFGPERRVLSFQ-NLGIQCVKKKDLKESISLRI 116
Query: 203 --NVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHP-GTRETEVLQVASHPI 251
++ E ++ R+ F+ + G + + S+PI
Sbjct: 117 SKKINPFNVPEEQLHNIDEYDLNVVRLCFQAFLPDEHGNYTLALPPLISNPI 168
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB),
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 173
Score = 116 bits (293), Expect = 2e-32
Identities = 42/178 (23%), Positives = 64/178 (35%), Gaps = 32/178 (17%)
Query: 92 YLEITSQPEQQ-HRARYQTEGSR-----GAVKDKSGNGFPVVKLVGYNGPATLEVFIGTD 145
Y+EI QP+Q+ R RY+ EG G + P +K+ GY GP T+ + + T
Sbjct: 2 YVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTK 61
Query: 146 QGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVD 205
PH + GK+ DG D+ + +GI + D
Sbjct: 62 DPPHRPH----PHELVGKDC-------RDGYYEADL---CPDRSIHSFQNLGIQCVKKRD 107
Query: 206 VEQRFP------------EDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPI 251
+EQ + R+ F+ T+ P R + V SHPI
Sbjct: 108 LEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVLSHPI 165
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 111 bits (280), Expect = 2e-30
Identities = 41/179 (22%), Positives = 64/179 (35%), Gaps = 25/179 (13%)
Query: 92 YLEITSQPEQQ-HRARYQTEGSR-----GAVKDKSGNGFPVVKLVGYNGPATLEVFIGTD 145
YL I QP+Q+ R RY EG GA +K +P VK+ Y GPA +EV + T
Sbjct: 3 YLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVDLVTH 62
Query: 146 QGKIAPH---MFYQACRVAGKNSTPCLEKKTDGTV-------IIDIDFDPSKDMSVTCDC 195
H + + C G + K + + + +
Sbjct: 63 SDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNLGVLHVTKKNMMGTMIQKLQRQR 122
Query: 196 VGILKERNVDVEQRFPEDSSAKNKKRSTRC--RMVFRTTIIHPGTRETEVLQ-VASHPI 251
+ + + EQR E + + KK R+ F + + L+ V S PI
Sbjct: 123 LRSRPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAFL------RSLPLKPVISQPI 175
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria
mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 175
Score = 107 bits (268), Expect = 9e-29
Identities = 46/183 (25%), Positives = 68/183 (37%), Gaps = 36/183 (19%)
Query: 92 YLEITSQPEQQ-HRARYQTEGSR-----GAVKDKSGNGFPVVKLVGYNGPATLEVFIGT- 144
Y+EIT QP + R RY+ EG G FP +++ GY G A + V T
Sbjct: 2 YVEITEQPHPKALRFRYECEGRSAGSIPGVNTTAEQKTFPSIQVHGYRGRAVVVVSCVTK 61
Query: 145 DQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNV 204
+ + PH + GK G ++I+ S MS T + +GI +
Sbjct: 62 EGPEHKPH----PHNLVGKEGC------KKGVCTVEIN---STTMSYTFNNLGIQCVKKK 108
Query: 205 DVE---------QRFPEDSSAKNKKRSTRC-----RMVFRTTIIHP-GTRETEVLQ-VAS 248
DVE + P + + K R+ F+ + R TE L V S
Sbjct: 109 DVEEALRLRQEIRVDPFRTGFGHAKEPGSIDLNAVRLCFQVFLEGQQRGRFTEPLTPVVS 168
Query: 249 HPI 251
I
Sbjct: 169 DII 171
>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5
(TONEBP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 56.7 bits (137), Expect = 4e-11
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 20/78 (25%)
Query: 259 VPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVA 318
VPEI KKSL SC V G E+F ++GKNFLK T+V FQ+ V+
Sbjct: 1 VPEILKKSLHSCSVKGEEEVF--------------------LIGKNFLKGTKVIFQENVS 40
Query: 319 DICQWEESVLPDKEFLQQ 336
D W+ D E Q
Sbjct: 41 DENSWKSEAEIDMELFHQ 58
>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1
(NFATC2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 51.5 bits (123), Expect = 3e-09
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 21/79 (26%)
Query: 259 VPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVA 318
+P + ++ SC V GG ++ + G+NF +++V F +
Sbjct: 2 LPMVERQDTDSCLVYGGQQMI--------------------LTGQNFTSESKVVFTEKTT 41
Query: 319 D-ICQWEESVLPDKEFLQQ 336
D WE DK+ Q
Sbjct: 42 DGQQIWEMEATVDKDKSQP 60
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription
factor {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 51.6 bits (124), Expect = 3e-09
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 22/79 (27%)
Query: 260 PEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLK-DTQVKFQKMVA 318
+I + T+ VTGG E++ +L K D Q++F +
Sbjct: 2 LKIVRMDRTAGCVTGGEEIW--------------------LLCDKVQKDDIQIRFYEEEE 41
Query: 319 DICQWEESVLPDK-EFLQQ 336
+ WE + +Q
Sbjct: 42 NGGVWEGFGDFSPTDVHRQ 60
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 47.7 bits (114), Expect = 6e-08
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 23/76 (30%)
Query: 262 ICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLK-DTQVKFQKMVADI 320
I + T+ V GG E++ +L K D +V+F + +
Sbjct: 4 ISRMDKTAGSVRGGDEVY--------------------LLCDKVQKDDIEVRFYEDDENG 43
Query: 321 CQWEESVLPDKEFLQQ 336
W+ + +
Sbjct: 44 --WQAFGDFSPTDVHK 57
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB),
dimerization domain {Chicken (Gallus gallus), C-rel
[TaxId: 9031]}
Length = 100
Score = 47.0 bits (112), Expect = 1e-07
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 24/77 (31%)
Query: 260 PEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVAD 319
IC+ + V GG E+F + K D +V+F
Sbjct: 4 LRICRVNKNCGSVKGGDEIF-------------------ILCDKVQKDDIEVRFVLD--- 41
Query: 320 ICQWEESVLPDKEFLQQ 336
WE + + +
Sbjct: 42 --NWEAKGSFSQADVHR 56
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB),
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 49.2 bits (117), Expect = 1e-07
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 20/123 (16%)
Query: 92 YLEITSQPEQQ-HRARYQTEGS-----RGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTD 145
YL+I QP+Q+ R RY EG GA +K+ +P VK+ Y GPA + V + T+
Sbjct: 4 YLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTN 63
Query: 146 QGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVD 205
I H A + GK+ C DG + + P KDM V +GIL
Sbjct: 64 GKNIHLH----AHSLVGKH---C----EDG--VCTVTAGP-KDMVVGFANLGILHVTKKK 109
Query: 206 VEQ 208
V +
Sbjct: 110 VFE 112
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB),
dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 42.8 bits (101), Expect = 4e-06
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 26/78 (33%)
Query: 260 PEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLK-DTQVKFQKMVA 318
+IC+ + S GG E+F +L K D +V F
Sbjct: 4 LKICRVNRRSGSCLGGDEIF--------------------LLCDKVQKEDIEVYFTGPG- 42
Query: 319 DICQWEESVLPDKEFLQQ 336
WE + + +
Sbjct: 43 ----WEARGSFSQADVHR 56
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 323
Score = 30.4 bits (67), Expect = 0.27
Identities = 22/270 (8%), Positives = 67/270 (24%), Gaps = 12/270 (4%)
Query: 53 SSSSVAPTRPGRRLYGKRLSNITAQNSASISYSVRDPSVYLEITSQPEQQHRARYQTEGS 112
S + + + R S+ +S S+ + +
Sbjct: 44 SIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTV 103
Query: 113 RGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKK 172
+ ++ G + ++ VA + +++
Sbjct: 104 GLSTQE---PGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN 160
Query: 173 TDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTT 232
+++ DPS +++ + + + T+
Sbjct: 161 GQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTS 220
Query: 233 IIHPGTRETEVLQVASHPIMCNQPPG-VPEICKKSLTSCPVTGGAELFKVSPTD-TIAGK 290
+ + + +Q A + + + +++ ++P+ T +
Sbjct: 221 KLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQ 280
Query: 291 GL-------LQDHPDAILGKNFLKDTQVKF 313
G ILG F+++ F
Sbjct: 281 GFCTSGFQSENHSQKWILGDVFIREYYSVF 310
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus
chinensis) [TaxId: 4843]}
Length = 325
Score = 26.4 bits (57), Expect = 5.4
Identities = 48/310 (15%), Positives = 85/310 (27%), Gaps = 44/310 (14%)
Query: 25 TP--TVKVESDNANANFTFPQNPLPLC--------SMASSSSVAPTRPGRRLYGKRLSNI 74
TP ++ D +++ C SS+ A R YG
Sbjct: 25 TPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYG------ 78
Query: 75 TAQNSASISYSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNG 134
+ +S S + +V L Q + S + + G + G
Sbjct: 79 ---DGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRG 135
Query: 135 PATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCD 194
T + QG I+ +F A G I +D +K
Sbjct: 136 VKTP-MDNLISQGLISRPIFGVYLGKAKNGG---------GGEYIFGGYDSTKFKGSL-- 183
Query: 195 CVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCN 254
+ + + + ++ ++ + T VA +
Sbjct: 184 -TTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASD 242
Query: 255 QPPGVPEICKKSLTSCPVT---GGAELFKVSPTDTIAGKG--------LLQDHPDAILGK 303
G I + P+ GA F+VSP + + + AI+G
Sbjct: 243 NGDGTYTISCDTSAFKPLVFSINGAS-FQVSPDSLVFEEFQGQCIAGFGYGNWGFAIIGD 301
Query: 304 NFLKDTQVKF 313
FLK+ V F
Sbjct: 302 TFLKNNYVVF 311
>d1wmxa_ b.18.1.24 (A:) Endoglucanase CelJ {Clostridium thermocellum
[TaxId: 1515]}
Length = 173
Score = 25.7 bits (56), Expect = 5.7
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 110 EGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQG 147
GS + G+ PV V YNG TL + + T
Sbjct: 16 SGSGMGELETIGDTLPVDTTVTYNGLPTLRLNVQTTVQ 53
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 26.3 bits (56), Expect = 5.9
Identities = 16/212 (7%), Positives = 54/212 (25%), Gaps = 12/212 (5%)
Query: 135 PATLEVFIG-----------TDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDF 183
P +L +DQ + PH+ GK + ++ +
Sbjct: 7 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLK 66
Query: 184 DPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEV 243
+ + L + N + + + + ++++
Sbjct: 67 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKD 126
Query: 244 LQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGK 303
+ + ++ + ++ ++ + +L
Sbjct: 127 GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLL-I 185
Query: 304 NFLKDTQVKFQKMVADICQWEESVLPDKEFLQ 335
+ + +++D+ E L K+ L+
Sbjct: 186 RCPAPSDSEISTILSDVVTNERIQLETKDILK 217
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.399
Gapped
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,241,021
Number of extensions: 56502
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 17
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)