BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11903
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase
Complexed With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase
Complexed With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase
Complexed With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase
Complexed With Galactose
Length = 344
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 28 VRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDD----MREEIYFIMVCS 83
V +F L S + V +I +G TIT ++V D++G DVVLGF + ++++ YF V
Sbjct: 21 VEKFQL-QSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIG 79
Query: 84 KCEKKLGK 91
+ ++ K
Sbjct: 80 RVANRIAK 87
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
Length = 339
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 33 LTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEIYFIMVCSKCEKKLGKV 92
+ N Q ++ ++ +GAT+ + PDK G D+VLGFD + E F + K +G+V
Sbjct: 17 IANKQGLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDE---FEKDAASIGKTVGRV 73
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 51 TTIKVPDKRGNVDDVVLGFDDMREEIYFIMVCSKCEKKLGKVI--TPDNWKSGS 102
TT++VP K+GN D V GF D+ + ++ K K+ +I T N SGS
Sbjct: 84 TTVRVPLKKGN-PDYVKGFKDISFNDFPSLLSYKDRXKIALLIVSTRKNRPSGS 136
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 96 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS--HYCQA 153
D+W + + T +G + +G++ +T K +K SC KV+Q+GS QA
Sbjct: 299 DDWGAWQKFTASAGIQVVGDDLTVTNPKRIAKAVNEK--SCNCLLLKVNQIGSVTESLQA 356
Query: 154 C 154
C
Sbjct: 357 C 357
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 96 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS--HYCQA 153
D+W + + T +G + +G++ +T K +K SC KV+Q+GS QA
Sbjct: 298 DDWGAWQKFTASAGIQVVGDDLTVTNPKRIAKAVNEK--SCNCLLLKVNQIGSVTESLQA 355
Query: 154 C 154
C
Sbjct: 356 C 356
>pdb|3QTP|A Chain A, Crystal Structure Analysis Of Entamoeba Histolytica
Enolase
pdb|3QTP|B Chain B, Crystal Structure Analysis Of Entamoeba Histolytica
Enolase
Length = 441
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 96 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS 148
D+W + ++ T+E G +I + L + AR K +C KV+Q+G+
Sbjct: 307 DDWAAWNKFTVEHGNFQIVGDDLLVTNPARVQMAMDK-NACNSVLIKVNQIGT 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,405,065
Number of Sequences: 62578
Number of extensions: 210297
Number of successful extensions: 446
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 17
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)