BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11903
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q792Q4|CRIPT_RAT Cysteine-rich PDZ-binding protein OS=Rattus norvegicus GN=Cript
PE=1 SV=1
Length = 101
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 86/100 (86%), Gaps = 1/100 (1%)
Query: 80 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 138
MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct: 1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60
Query: 139 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 178
C+ VHQ GSHYCQ CAYKKGICAMCGKK+LD KNYKQ++
Sbjct: 61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100
>sp|O70333|CRIPT_MOUSE Cysteine-rich PDZ-binding protein OS=Mus musculus GN=Cript PE=1
SV=1
Length = 101
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 86/100 (86%), Gaps = 1/100 (1%)
Query: 80 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 138
MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct: 1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60
Query: 139 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 178
C+ VHQ GSHYCQ CAYKKGICAMCGKK+LD KNYKQ++
Sbjct: 61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100
>sp|Q9P021|CRIPT_HUMAN Cysteine-rich PDZ-binding protein OS=Homo sapiens GN=CRIPT PE=1
SV=1
Length = 101
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 85/100 (85%), Gaps = 1/100 (1%)
Query: 80 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 138
MVC KCEKKLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct: 1 MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60
Query: 139 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 178
C+ VHQ GSHYCQ CAYKKGICAMCGKK+LD KNYKQ++
Sbjct: 61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100
>sp|Q3ZC66|CRIPT_BOVIN Cysteine-rich PDZ-binding protein OS=Bos taurus GN=CRIPT PE=1 SV=1
Length = 101
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 85/100 (85%), Gaps = 1/100 (1%)
Query: 80 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 138
MVC KCEKKLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct: 1 MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60
Query: 139 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 178
C+ VHQ GSHYCQ CAYKKGICAMCGKK+LD KNYKQ++
Sbjct: 61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100
>sp|Q6NU28|CRIPT_XENLA Cysteine-rich PDZ-binding protein OS=Xenopus laevis GN=cript PE=3
SV=1
Length = 101
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 84/100 (84%), Gaps = 1/100 (1%)
Query: 80 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 138
MVC KCEKKLG VITPD WKSG+RNT ESGGR++ ENKALT+ ARFNPY + KF C+I
Sbjct: 1 MVCDKCEKKLGTVITPDTWKSGARNTTESGGRKLNENKALTSKTARFNPYGKNKFAICRI 60
Query: 139 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 178
C+ VHQ GSHYCQ CAYKKGICAMCGKK+L+ KNYKQ++
Sbjct: 61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLETKNYKQTS 100
>sp|Q567Z6|CRIPT_DANRE Cysteine-rich PDZ-binding protein OS=Danio rerio GN=cript PE=3 SV=1
Length = 101
Score = 156 bits (395), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 70/100 (70%), Positives = 84/100 (84%), Gaps = 1/100 (1%)
Query: 80 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQK-FESCKI 138
MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENK LT+ KARF+PY + F +C+I
Sbjct: 1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKMLTSKKARFDPYGKSGFATCRI 60
Query: 139 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 178
C+ VHQ GSHYCQ CAYKKGICAMCGKK++D KNYKQ++
Sbjct: 61 CKSSVHQSGSHYCQGCAYKKGICAMCGKKVIDTKNYKQTS 100
>sp|Q5ZKB6|CRIPT_CHICK Cysteine-rich PDZ-binding protein OS=Gallus gallus GN=CRIPT PE=3
SV=1
Length = 101
Score = 156 bits (395), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 84/100 (84%), Gaps = 1/100 (1%)
Query: 80 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 138
MVC KCE+KLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF C+I
Sbjct: 1 MVCEKCERKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFAICRI 60
Query: 139 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 178
C+ VHQ GSHYCQ CAYKKGIC+MCGKK+LD KNYKQ++
Sbjct: 61 CKSSVHQPGSHYCQGCAYKKGICSMCGKKVLDTKNYKQTS 100
>sp|Q1WCC0|CRIPT_ICTPU Cysteine-rich PDZ-binding protein OS=Ictalurus punctatus GN=cript
PE=3 SV=1
Length = 101
Score = 155 bits (393), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 83/100 (83%), Gaps = 1/100 (1%)
Query: 80 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQK-FESCKI 138
MVC KCEKKLG+VITPD WK G+RNT ESGGR+I ENK LT+ KA F+PY + F +C+I
Sbjct: 1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKINENKMLTSKKAGFDPYGKSGFSTCRI 60
Query: 139 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 178
C+ VHQ GSHYCQ CAYKKGICAMCGKK+LD KNYKQ++
Sbjct: 61 CKSSVHQSGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100
>sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1
Length = 381
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 22 NGQVLPVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDM--------R 73
NGQ V +T++N+ +SV I +G IT I PD +G +++VLGFDD+ +
Sbjct: 33 NGQ--KVDLYTMSNNNGVSVSFISFGGVITQILTPDAQGKQNNIVLGFDDLKGYEVTDTK 90
Query: 74 EEIYFIMVCSKCEKKLG 90
E I+F + + ++G
Sbjct: 91 EGIHFGGLIGRYANRIG 107
>sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1
Length = 342
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 28 VRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDD----MREEIYFIMVCS 83
V +F L S ++ V +I +G TIT ++V D++G DVVLGFD+ ++++ YF V
Sbjct: 19 VEKFQL-QSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFDELEGYLQKQPYFGAVVG 77
Query: 84 KCEKKLGK 91
+ ++ K
Sbjct: 78 RVANRIAK 85
>sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1
Length = 342
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 28 VRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEI----YFIMVCS 83
V +F L S ++ V +I +G TIT ++V D++G DVVLGF +++E + YF V
Sbjct: 19 VEKFQL-QSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFAELKEYLQKHPYFGAVVG 77
Query: 84 KCEKKLGK 91
+ ++ K
Sbjct: 78 RVANRIAK 85
>sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1
Length = 342
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 7 VVIMEDKFGECINESNGQVLPVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVV 66
V + FGE S G V +F L S ++SV +I +G TIT ++V D++G DVV
Sbjct: 2 VSVTRTVFGEL--PSGGGT--VEKFQL-RSDQLSVDIISWGCTITALQVKDRQGKASDVV 56
Query: 67 LGFDD----MREEIYFIMVCSKCEKKLGK 91
LGF + ++++ YF V + ++ K
Sbjct: 57 LGFAELEGYLQKQPYFGAVVGRVANRIAK 85
>sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1
Length = 342
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 28 VRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDD----MREEIYFIMVCS 83
V +F L + Q ++V +I +G TIT ++V D++G DVVLGF + ++++ YF V
Sbjct: 19 VEKFQLRSDQ-LNVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQKQPYFGAVVG 77
Query: 84 KCEKKLGK 91
+ ++ K
Sbjct: 78 RVANRIAK 85
>sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1
Length = 342
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 28 VRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDD----MREEIYFIMVCS 83
V +F L S + V +I +G TIT ++V D++G DVVLGF + ++++ YF V
Sbjct: 19 VEKFQL-QSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIG 77
Query: 84 KCEKKLGK 91
+ ++ K
Sbjct: 78 RVANRIAK 85
>sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1
Length = 342
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 28 VRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDD----MREEIYFIMVCS 83
V +F L S + V +I +G TIT ++V D++G DVVLGF + ++++ YF V
Sbjct: 19 VEKFQL-QSDLLRVDIISWGCTITALEVKDRQGRSSDVVLGFAELEGYLQKQPYFGAVIG 77
Query: 84 KCEKKLGK 91
+ ++ K
Sbjct: 78 RVANRIAK 85
>sp|P0A9C4|GALM_SHIFL Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1
Length = 346
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 27 PVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLG 68
P R TL N+ M V ++D+GAT+ + ++P G+V + +LG
Sbjct: 14 PYRLLTLRNNAGMVVTLMDWGATLLSARIPLSDGSVREALLG 55
>sp|P0A9C3|GALM_ECOLI Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1
SV=1
Length = 346
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 27 PVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLG 68
P R TL N+ M V ++D+GAT+ + ++P G+V + +LG
Sbjct: 14 PYRLLTLRNNAGMVVTLMDWGATLLSARIPLSDGSVREALLG 55
>sp|P31765|GALM_HAEIN Aldose 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=galM PE=3 SV=2
Length = 340
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 27 PVRRFTLTNSQRMSVQVIDYGATITTIKVP 56
P + TL N M VQ +D+GAT + KVP
Sbjct: 14 PYQLITLQNENGMRVQFMDWGATWLSCKVP 43
>sp|A0QZ47|PSB_MYCS2 Proteasome subunit beta OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=prcB PE=1 SV=2
Length = 303
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 4 IPDVVIMEDKFGECINESNGQVLPVRRFTLTNSQRMSVQVIDYGATITTIKVP------- 56
IP V + F E ++ ++LPV R + + +G TI +K P
Sbjct: 19 IPSVPVDLSSFSELLSRQAPELLPVNRVAYGTTPVGPTDAVPHGTTIVALKYPGGVLIAG 78
Query: 57 DKRGNVDDVVLGFD 70
D+R +++ G D
Sbjct: 79 DRRSTQGNMIAGRD 92
>sp|P21955|GALM_STRTR Aldose 1-epimerase OS=Streptococcus thermophilus GN=galM PE=3
SV=1
Length = 348
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 28 VRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEIYFIMVCSKCEK 87
V + ++ N+ + + + GAT+ VP + G + ++VLGF D E+ Y +C+ C+
Sbjct: 16 VSKISMENNNGVVISTLTTGATLQEFLVPMETGALKNIVLGFSDF-EDYYKNNLCA-CQ- 72
Query: 88 KLGKV 92
+G+V
Sbjct: 73 SIGRV 77
>sp|B6YPZ6|RPOC_AZOPC DNA-directed RNA polymerase subunit beta' OS=Azobacteroides
pseudotrichonymphae genomovar. CFP2 GN=rpoC PE=3 SV=1
Length = 1405
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 18/90 (20%)
Query: 80 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 139
+V S E+ LG+V D SR I G I E+KAL ++ I
Sbjct: 828 VVVSLYERILGRVSVCDVQHPESRKIIVYAGEEISEDKALA------------IQNSSIE 875
Query: 140 RQKVHQVGSHYCQACAYKKGICAMC-GKKL 168
R ++ V C KKG+C C G+ L
Sbjct: 876 RVEIRSV-----LTCESKKGVCVKCYGRNL 900
>sp|Q9W7L0|ENOA_PYTRG Alpha-enolase OS=Python regius PE=2 SV=3
Length = 434
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 96 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS--HYCQA 153
D+W + + T ESG + +G++ +T K R Q+ +SC KV+Q+GS QA
Sbjct: 299 DDWPAWKKFTAESGIQVVGDDLTVTNPK-RIAKAVQE-KSCNCLLLKVNQIGSVTESLQA 356
Query: 154 C 154
C
Sbjct: 357 C 357
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,101,620
Number of Sequences: 539616
Number of extensions: 2596146
Number of successful extensions: 6115
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6083
Number of HSP's gapped (non-prelim): 33
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)