Query psy11903
Match_columns 179
No_of_seqs 248 out of 1148
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 21:55:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1snz_A Aldose 1-epimerase; mut 99.5 1.4E-14 4.7E-19 125.9 9.3 99 8-114 5-116 (344)
2 3imh_A Galactose-1-epimerase; 99.5 2E-14 6.7E-19 126.0 9.5 92 8-113 4-107 (338)
3 1lur_A Aldose 1-epimerase; vit 99.4 8E-13 2.7E-17 114.8 7.2 84 27-113 12-107 (339)
4 1nsx_A Galactose mutarotase; e 99.3 8.4E-12 2.9E-16 108.9 7.8 88 9-113 3-102 (347)
5 1z45_A GAL10 bifunctional prot 99.1 1.1E-10 3.6E-15 108.3 6.2 91 12-114 362-465 (699)
6 1yga_A Hypothetical 37.9 kDa p 99.0 7.1E-10 2.4E-14 95.7 6.3 80 27-113 9-100 (342)
7 3os7_A Galactose mutarotase-li 98.4 8E-07 2.7E-11 76.9 8.9 80 27-111 17-113 (341)
8 3mwx_A Aldose 1-epimerase; str 98.3 1.3E-06 4.4E-11 74.9 7.6 79 27-110 13-105 (326)
9 3nre_A Aldose 1-epimerase; str 97.9 1.2E-05 4E-10 68.3 6.0 75 29-111 3-88 (291)
10 3q1n_A Galactose mutarotase re 97.5 9.7E-05 3.3E-09 62.5 5.3 56 30-91 2-58 (294)
11 2hta_A Putative enzyme related 97.0 0.00081 2.8E-08 57.0 5.5 58 27-90 40-103 (309)
12 3dcd_A Galactose mutarotase re 96.9 0.00099 3.4E-08 56.8 5.4 56 30-91 2-58 (307)
13 2cir_A Hexose-6-phosphate muta 96.9 0.00057 2E-08 57.3 3.9 58 27-90 6-71 (297)
14 3k25_A SLR1438 protein; struct 96.4 0.0067 2.3E-07 50.9 6.7 57 27-90 10-75 (289)
15 1m3v_A FLIN4, fusion of the LI 87.9 0.099 3.4E-06 38.3 -0.0 36 135-170 34-81 (122)
16 2ecy_A TNF receptor-associated 86.2 0.39 1.3E-05 30.9 2.2 37 134-170 16-62 (66)
17 2egp_A Tripartite motif-contai 85.4 0.28 9.6E-06 32.4 1.2 36 134-169 13-64 (79)
18 2ecv_A Tripartite motif-contai 84.9 0.36 1.2E-05 31.9 1.6 36 134-169 20-70 (85)
19 1g25_A CDK-activating kinase a 82.7 0.22 7.5E-06 32.0 -0.3 35 135-169 5-54 (65)
20 2ecg_A Baculoviral IAP repeat- 82.6 0.47 1.6E-05 31.6 1.4 38 134-171 26-69 (75)
21 2ecw_A Tripartite motif-contai 82.3 0.39 1.3E-05 31.8 0.9 36 134-169 20-70 (85)
22 2jne_A Hypothetical protein YF 82.2 0.3 1E-05 35.7 0.3 38 134-171 33-74 (101)
23 4ic3_A E3 ubiquitin-protein li 80.9 0.54 1.8E-05 31.3 1.2 39 134-172 25-69 (74)
24 1chc_A Equine herpes virus-1 r 80.7 0.76 2.6E-05 29.4 1.9 38 134-171 6-53 (68)
25 1bor_A Transcription factor PM 79.3 1.1 3.9E-05 28.0 2.3 36 134-169 7-48 (56)
26 1t1h_A Gspef-atpub14, armadill 78.6 0.35 1.2E-05 32.0 -0.4 36 134-169 9-54 (78)
27 2ysl_A Tripartite motif-contai 76.8 0.48 1.6E-05 30.8 -0.1 36 134-169 21-68 (73)
28 3ztg_A E3 ubiquitin-protein li 75.6 0.79 2.7E-05 31.2 0.8 36 134-169 14-61 (92)
29 2jrp_A Putative cytoplasmic pr 75.3 0.99 3.4E-05 31.8 1.2 34 135-168 4-41 (81)
30 2ea5_A Cell growth regulator w 75.0 1.9 6.5E-05 28.4 2.6 39 133-171 15-59 (68)
31 2csy_A Zinc finger protein 183 74.8 0.38 1.3E-05 32.2 -1.0 36 134-169 16-60 (81)
32 2ect_A Ring finger protein 126 72.8 1.7 5.7E-05 28.6 1.8 38 134-171 16-65 (78)
33 1jm7_A BRCA1, breast cancer ty 72.3 0.92 3.1E-05 31.8 0.4 36 134-169 22-69 (112)
34 2ckl_B Ubiquitin ligase protei 72.0 0.95 3.3E-05 34.3 0.5 37 134-170 55-102 (165)
35 3l11_A E3 ubiquitin-protein li 71.2 1.4 4.7E-05 31.3 1.2 36 134-169 16-61 (115)
36 2xjy_A Rhombotin-2; oncoprotei 70.8 0.79 2.7E-05 33.3 -0.2 35 135-169 31-77 (131)
37 4ayc_A E3 ubiquitin-protein li 70.4 0.91 3.1E-05 33.6 0.1 35 135-169 55-98 (138)
38 3ty1_A Hypothetical aldose 1-e 70.0 10 0.00035 32.9 6.7 34 22-55 42-76 (384)
39 2cup_A Skeletal muscle LIM-pro 69.2 1.3 4.4E-05 30.6 0.6 35 135-169 35-77 (101)
40 1x3h_A Leupaxin; paxillin fami 68.7 2.6 8.9E-05 27.8 2.1 13 160-172 43-55 (80)
41 2xqn_T Testin, TESS; metal-bin 68.0 0.95 3.2E-05 32.7 -0.3 11 80-90 4-14 (126)
42 2cuq_A Four and A half LIM dom 67.7 2.7 9.4E-05 27.7 2.0 11 134-144 16-26 (80)
43 1e4u_A Transcriptional repress 67.3 1.8 6.1E-05 29.4 1.0 37 134-170 12-62 (78)
44 3bs6_A Inner membrane protein 67.2 5.4 0.00018 32.9 4.2 29 28-57 3-31 (280)
45 3fl2_A E3 ubiquitin-protein li 67.2 1.3 4.3E-05 32.0 0.2 37 134-170 53-99 (124)
46 1kbe_A Kinase suppressor of RA 66.9 0.95 3.3E-05 28.7 -0.4 31 125-157 6-36 (49)
47 2rgt_A Fusion of LIM/homeobox 66.0 1.7 5.9E-05 33.1 0.8 11 80-90 7-17 (169)
48 2egq_A FHL1 protein; LIM domai 64.3 3.6 0.00012 26.9 2.1 21 149-169 4-26 (77)
49 2ecj_A Tripartite motif-contai 64.0 1.7 5.9E-05 26.6 0.4 31 134-164 16-58 (58)
50 3blc_A Inner membrane protein 63.6 5.8 0.0002 33.6 3.7 38 28-67 34-75 (330)
51 2ea6_A Ring finger protein 4; 63.2 0.85 2.9E-05 29.0 -1.2 37 133-169 15-67 (69)
52 1iym_A EL5; ring-H2 finger, ub 63.0 3.4 0.00012 25.0 1.6 36 134-169 6-54 (55)
53 2d8t_A Dactylidin, ring finger 62.5 1.3 4.5E-05 28.7 -0.4 37 134-170 16-61 (71)
54 2jtn_A LIM domain-binding prot 62.3 1.8 6E-05 33.5 0.2 33 134-170 120-159 (182)
55 2c6a_A Ubiquitin-protein ligas 61.7 2.8 9.6E-05 26.5 1.0 21 134-155 14-34 (46)
56 2y43_A E3 ubiquitin-protein li 61.2 1.8 6.1E-05 29.9 0.1 37 134-170 23-69 (99)
57 2djb_A Polycomb group ring fin 61.0 2.4 8.3E-05 27.5 0.7 37 134-170 16-62 (72)
58 2ep4_A Ring finger protein 24; 60.7 2.3 7.8E-05 27.6 0.5 43 134-176 16-70 (74)
59 2xeu_A Ring finger protein 4; 60.7 1.1 3.7E-05 28.0 -1.1 37 134-170 4-56 (64)
60 3ng2_A RNF4, snurf, ring finge 60.3 1.1 3.8E-05 28.7 -1.1 37 134-170 11-63 (71)
61 1x6a_A LIMK-2, LIM domain kina 60.2 4.7 0.00016 26.6 2.1 37 133-170 15-53 (81)
62 2a20_A Regulating synaptic mem 59.8 3 0.0001 27.9 1.0 36 133-170 9-45 (62)
63 2kiz_A E3 ubiquitin-protein li 58.7 2.7 9.1E-05 26.9 0.6 37 134-170 15-63 (69)
64 1x4j_A Ring finger protein 38; 58.5 3 0.0001 27.2 0.8 38 133-170 23-72 (75)
65 2ct2_A Tripartite motif protei 58.5 2.2 7.5E-05 28.4 0.2 36 134-169 16-67 (88)
66 2cr8_A MDM4 protein; ZF-ranbp 58.2 3.2 0.00011 26.9 0.9 21 134-155 12-32 (53)
67 2ysj_A Tripartite motif-contai 57.8 2.9 9.8E-05 26.3 0.6 31 134-164 21-63 (63)
68 1x63_A Skeletal muscle LIM-pro 57.6 6.3 0.00022 25.9 2.4 39 133-172 15-57 (82)
69 2yur_A Retinoblastoma-binding 57.5 3.5 0.00012 26.9 1.0 37 134-170 16-64 (74)
70 1rut_X Flinc4, fusion protein 57.5 1.5 5.2E-05 34.1 -0.9 11 80-90 6-16 (188)
71 2yho_A E3 ubiquitin-protein li 57.3 4 0.00014 27.5 1.4 38 134-171 19-62 (79)
72 2ehe_A Four and A half LIM dom 55.8 6.3 0.00021 26.0 2.1 11 160-170 45-55 (82)
73 2dlo_A Thyroid receptor-intera 54.1 7.2 0.00025 25.7 2.2 40 133-173 15-56 (81)
74 2ckl_A Polycomb group ring fin 53.3 3.2 0.00011 29.1 0.3 37 134-170 16-62 (108)
75 2k0a_A PRE-mRNA-splicing facto 52.9 2.8 9.7E-05 30.9 -0.0 27 129-155 53-79 (109)
76 1a7i_A QCRP2 (LIM1); LIM domai 52.8 5.1 0.00018 26.5 1.3 32 135-166 36-75 (81)
77 1v6g_A Actin binding LIM prote 52.8 7.7 0.00026 25.5 2.2 38 134-172 16-55 (81)
78 3t6p_A Baculoviral IAP repeat- 51.7 7.4 0.00025 33.6 2.4 38 134-171 296-339 (345)
79 3hct_A TNF receptor-associated 51.1 3.5 0.00012 29.4 0.2 38 134-171 19-66 (118)
80 1rmd_A RAG1; V(D)J recombinati 51.0 3.3 0.00011 29.3 0.1 37 134-170 24-70 (116)
81 2y1n_A E3 ubiquitin-protein li 50.9 4.1 0.00014 36.1 0.6 39 133-171 332-380 (389)
82 1jov_A HI1317; hypothetical pr 50.8 21 0.00073 29.0 5.0 28 28-56 21-48 (270)
83 3gox_A Restriction endonucleas 49.3 4.2 0.00014 33.1 0.4 35 132-170 103-149 (200)
84 2ecm_A Ring finger and CHY zin 48.5 5.4 0.00019 24.0 0.8 36 134-169 6-54 (55)
85 4ap4_A E3 ubiquitin ligase RNF 48.0 3.4 0.00012 29.2 -0.3 37 134-170 8-60 (133)
86 1jm7_B BARD1, BRCA1-associated 47.7 9.2 0.00032 27.1 2.1 36 134-169 23-66 (117)
87 1z6u_A NP95-like ring finger p 45.7 4.1 0.00014 30.8 -0.1 38 134-171 79-126 (150)
88 1x4l_A Skeletal muscle LIM-pro 45.5 17 0.00058 23.2 3.0 12 160-171 37-48 (72)
89 1b8t_A Protein (CRP1); LIM dom 41.5 4.2 0.00014 31.5 -0.7 11 160-170 117-127 (192)
90 3vk6_A E3 ubiquitin-protein li 40.9 6.5 0.00022 28.7 0.3 31 147-177 21-56 (101)
91 3lrq_A E3 ubiquitin-protein li 40.9 5.5 0.00019 27.6 -0.1 36 134-169 23-69 (100)
92 2c2l_A CHIP, carboxy terminus 39.7 8.3 0.00028 30.7 0.8 37 133-169 208-254 (281)
93 2ecn_A Ring finger protein 141 39.5 3.4 0.00012 26.4 -1.3 38 134-171 16-61 (70)
94 2vje_B MDM4 protein; proto-onc 36.1 3.7 0.00013 26.3 -1.5 39 133-171 7-57 (63)
95 2cu8_A Cysteine-rich protein 2 35.6 24 0.00083 22.7 2.5 11 134-144 10-20 (76)
96 1nyp_A Pinch protein; LIM doma 34.9 26 0.00089 21.8 2.5 11 160-170 33-43 (66)
97 1iml_A CRIP, cysteine rich int 32.0 13 0.00046 24.0 0.7 34 135-168 29-71 (76)
98 3j21_g 50S ribosomal protein L 31.6 19 0.00065 22.9 1.4 22 135-157 16-37 (51)
99 1wyh_A SLIM 2, skeletal muscle 31.1 29 0.001 21.9 2.3 12 160-171 35-46 (72)
100 2iyb_E Testin, TESS, TES; LIM 30.4 20 0.0007 22.5 1.4 11 160-170 34-44 (65)
101 2kr4_A Ubiquitin conjugation f 30.0 11 0.00039 25.4 0.1 36 134-169 15-59 (85)
102 2jrp_A Putative cytoplasmic pr 29.9 11 0.00038 26.3 0.0 31 135-167 20-50 (81)
103 2co8_A NEDD9 interacting prote 29.6 52 0.0018 21.6 3.5 9 135-143 44-52 (82)
104 3nw0_A Non-structural maintena 29.5 22 0.00075 29.0 1.8 35 132-168 179-227 (238)
105 1x68_A FHL5 protein; four-and- 29.5 25 0.00085 22.7 1.7 23 135-157 37-65 (76)
106 2l0b_A E3 ubiquitin-protein li 29.2 11 0.00037 25.6 -0.1 37 133-169 40-88 (91)
107 1x4k_A Skeletal muscle LIM-pro 29.0 26 0.00087 22.2 1.7 12 160-171 35-46 (72)
108 1x61_A Thyroid receptor intera 28.7 40 0.0014 21.3 2.6 11 160-170 35-45 (72)
109 3u6p_A Formamidopyrimidine-DNA 27.9 16 0.00054 30.4 0.6 31 124-154 236-271 (273)
110 1ee8_A MUTM (FPG) protein; bet 27.3 18 0.00061 30.0 0.9 32 124-155 226-262 (266)
111 2ecl_A Ring-box protein 2; RNF 25.8 20 0.00068 23.8 0.7 24 146-169 48-75 (81)
112 1zbd_B Rabphilin-3A; G protein 25.5 24 0.00082 26.5 1.2 36 133-170 55-92 (134)
113 2kre_A Ubiquitin conjugation f 25.5 17 0.00057 25.5 0.3 36 134-169 30-74 (100)
114 1g47_A Pinch protein; LIM doma 25.2 55 0.0019 20.8 2.9 13 160-172 41-53 (77)
115 1x62_A C-terminal LIM domain p 24.7 39 0.0013 21.9 2.0 36 133-172 15-55 (79)
116 2csz_A Synaptotagmin-like prot 24.4 43 0.0015 23.0 2.2 52 115-170 5-62 (76)
117 1k3x_A Endonuclease VIII; hydr 24.1 20 0.0007 29.5 0.6 31 124-154 225-260 (262)
118 1wgm_A Ubiquitin conjugation f 23.3 17 0.00058 25.4 -0.0 36 134-169 23-68 (98)
119 3f6q_B LIM and senescent cell 23.0 40 0.0014 21.0 1.8 35 134-172 12-53 (72)
120 2d8x_A Protein pinch; LIM doma 23.0 51 0.0018 20.6 2.3 12 160-171 33-44 (70)
121 2lo3_A SAGA-associated factor 22.7 22 0.00076 22.0 0.4 10 160-169 19-28 (44)
122 2d8z_A Four and A half LIM dom 22.7 51 0.0018 20.6 2.3 9 135-143 33-41 (70)
123 1x64_A Alpha-actinin-2 associa 22.6 61 0.0021 21.5 2.7 36 134-173 26-66 (89)
124 1rji_A BMKX, potassium channel 22.5 37 0.0013 19.2 1.3 17 160-176 12-28 (31)
125 1v87_A Deltex protein 2; ring- 22.5 28 0.00095 24.1 1.0 36 134-169 26-93 (114)
126 3dpl_R Ring-box protein 1; ubi 22.0 20 0.0007 25.5 0.2 22 147-168 74-99 (106)
127 1zfo_A LAsp-1; LIM domain, zin 21.9 32 0.0011 19.1 1.0 12 159-170 4-15 (31)
128 2cur_A Skeletal muscle LIM-pro 21.6 49 0.0017 20.6 2.0 10 160-169 33-42 (69)
129 3hcs_A TNF receptor-associated 20.7 25 0.00085 26.3 0.4 38 134-171 19-66 (170)
130 2kq9_A DNAK suppressor protein 20.6 25 0.00085 25.4 0.4 11 159-169 82-92 (112)
131 2xzf_A Formamidopyrimidine-DNA 20.5 31 0.001 28.5 1.0 32 124-155 233-269 (271)
132 2vje_A E3 ubiquitin-protein li 20.4 9 0.00031 24.5 -1.9 38 134-171 9-58 (64)
133 2lvu_A Zinc finger and BTB dom 25.4 22 0.00075 17.0 0.0 11 160-170 4-14 (26)
No 1
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Probab=99.54 E-value=1.4e-14 Score=125.92 Aligned_cols=99 Identities=29% Similarity=0.544 Sum_probs=84.8
Q ss_pred eeeeccccceeccCCC-ceecEEEEEEEcCCCeEEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhh----hhhhcc
Q psy11903 8 VIMEDKFGECINESNG-QVLPVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEI----YFIMVC 82 (179)
Q Consensus 8 ~i~~~~FG~~~~~~~G-~~~~v~~~tL~n~~gl~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~----~~gmvc 82 (179)
.|+++.||+++ +| + .+..|+|+|+ +++|+|++|||+|++|.++|++|..++|||||+++++|. ++|+++
T Consensus 5 ~~~~~~~g~~~---~g~~--~~~~~~L~n~-~~~~~i~~~GA~l~s~~~~~~~G~~~~vv~g~~~~~~y~~~~~~~G~~l 78 (344)
T 1snz_A 5 SVTRAVFGELP---SGGG--TVEKFQLQSD-LLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVI 78 (344)
T ss_dssp EEEEEEEEEET---TTTE--EEEEEEEECS-SCEEEEETBTTEEEEEEEECTTSCEEECBCCCSSHHHHHSSCSCTTCEE
T ss_pred eeEeeeeeecc---CCCc--EEEEEEEEcC-CEEEEEecCCcEEEEEEecCCCCCEeeEEECCCChHHHhhCCCceeeEe
Confidence 56677899886 88 7 8999999996 999999999999999999999998889999999999997 578999
Q ss_pred ccccceecc--------eeccCccCCCCCccccCCceecc
Q psy11903 83 SKCEKKLGK--------VITPDNWKSGSRNTIESGGRRIG 114 (179)
Q Consensus 83 ~kc~~klg~--------va~pd~~k~~~~n~l~gG~~gi~ 114 (179)
+++++||+. .+++++ + .+.|.+|||.+|+.
T Consensus 79 ~p~~nRi~~g~f~~~G~~y~L~~-N-~~~~~lHG~~~g~~ 116 (344)
T 1snz_A 79 GRVANRIAKGTFKVDGKEYHLAI-N-KEPNSLHGGVRGFD 116 (344)
T ss_dssp CSBCSEEGGGEEEETTEEEECCC-T-BTTBEETTSSSCGG
T ss_pred cCcCCcccCCEEEECCEEEECCC-C-CCCcccCCCccccc
Confidence 999999963 455553 4 45799999987663
No 2
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus}
Probab=99.53 E-value=2e-14 Score=125.97 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=78.5
Q ss_pred eeeeccccceeccCCCceecEEEEEEEcCCCeEEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhh----hhhhccc
Q psy11903 8 VIMEDKFGECINESNGQVLPVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEI----YFIMVCS 83 (179)
Q Consensus 8 ~i~~~~FG~~~~~~~G~~~~v~~~tL~n~~gl~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~----~~gmvc~ 83 (179)
.|+++.||++ +|+ ++++|||+|+.|++|+|++|||+|++|.++| +||||||+++++|+ ++|++.+
T Consensus 4 ~~~~~~fg~~----~g~--~v~~~tL~n~~g~~v~i~~~GA~l~sl~~~~-----~dvvlg~~~~~~y~~~~~~~G~~lg 72 (338)
T 3imh_A 4 KTNFVKYERK----DNK--DLCEITLENDAGMAVKVLNYGATLEKVLLDG-----ENMILSLNSPEDYSKERNFLGGTVG 72 (338)
T ss_dssp EEEEEEEEEE----TTE--EEEEEEEECSSSEEEEEETBTTEEEEEEETT-----EECBCCCSSGGGGGTSCCCTTCEEC
T ss_pred ccEEeecccc----CCe--EEEEEEEECCCcEEEEEecCCcEEEEEEECC-----EEEEecCCChHHhccCCCeEeeEEE
Confidence 4677899986 787 8999999997789999999999999999985 79999999999997 5789999
Q ss_pred cccceecc--------eeccCccCCCCCccccCCceec
Q psy11903 84 KCEKKLGK--------VITPDNWKSGSRNTIESGGRRI 113 (179)
Q Consensus 84 kc~~klg~--------va~pd~~k~~~~n~l~gG~~gi 113 (179)
++++||+. .+++++ | .+.|+||||. |+
T Consensus 73 p~anRI~~g~f~~~G~~y~L~~-N-~g~n~LHGg~-g~ 107 (338)
T 3imh_A 73 RIAGRVRAGQWKHGNEIHQLPL-N-DGDNHIHGGI-GT 107 (338)
T ss_dssp SBCSEEGGGEEEETTEEEECCC-C-BTTBEETTSS-CG
T ss_pred eeCCEecCCEEEECCEEEECCC-C-CCCcCCCCCC-Cc
Confidence 99999964 555553 4 4689999997 54
No 3
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4
Probab=99.36 E-value=8e-13 Score=114.82 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=71.5
Q ss_pred cEEEEEEEcCCCeEEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhh----hhhhccccccceecc--------eec
Q psy11903 27 PVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEI----YFIMVCSKCEKKLGK--------VIT 94 (179)
Q Consensus 27 ~v~~~tL~n~~gl~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~----~~gmvc~kc~~klg~--------va~ 94 (179)
.+.+|+| ++++++|+|++|||+|++|++||++|..+|||||||++++|. ++|++.+++++||+. .++
T Consensus 12 ~~~~~~L-~~~~~~~~i~~~GA~l~sl~~~d~~G~~~dvvl~~~~~~~y~~~~~~~G~~lgp~anRI~~g~f~~~G~~y~ 90 (339)
T 1lur_A 12 SGFIEIA-NKQGLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASIGKTVGRVANRIKNSTLHFDGKQYT 90 (339)
T ss_dssp CCCEEEE-CSSSCEEEEETBTTEEEEEEEECTTSCEEECBCCCSSHHHHHHCSSCTTCEECSBCSEEGGGEEEETTEEEE
T ss_pred eeEEEEE-eCCCEEEEEecCCcEEEEEEEECCCCCEeEEEEcCCChHHhccCCCccccEecCcCCeecCCEEEECCEEEE
Confidence 6888999 456899999999999999999999998889999999999987 478999999999964 444
Q ss_pred cCccCCCCCccccCCceec
Q psy11903 95 PDNWKSGSRNTIESGGRRI 113 (179)
Q Consensus 95 pd~~k~~~~n~l~gG~~gi 113 (179)
+++ + .+.|.+|||.+|+
T Consensus 91 L~~-N-~~~n~lHGg~~g~ 107 (339)
T 1lur_A 91 MTP-N-NGPHYLHGGPNGL 107 (339)
T ss_dssp CCC-S-BTTBEETTCTTSG
T ss_pred CCC-C-CCCcccCCCCccc
Confidence 543 4 4679999998765
No 4
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Probab=99.26 E-value=8.4e-12 Score=108.90 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=71.3
Q ss_pred eeeccccceeccCCCceecEEEEEEEcCCCeEEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhhh----hhhcccc
Q psy11903 9 IMEDKFGECINESNGQVLPVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEIY----FIMVCSK 84 (179)
Q Consensus 9 i~~~~FG~~~~~~~G~~~~v~~~tL~n~~gl~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~~----~gmvc~k 84 (179)
|+++.||+ .+..|+|+|+++++|+|++|||+|++|. . +|. +|||||+++++|.. +|++.++
T Consensus 3 ~~~~~fg~----------~~~~~tL~n~~~~~v~i~~~GA~l~sl~-~--~G~--~vvlg~~~~~~y~~~~~~~G~~lgp 67 (347)
T 1nsx_A 3 IKIRDFGL----------GSDLISLTNKAGVTISFTNLGARIVDWQ-K--DGK--HLILGFDSAKEYLEKDAYPGATVGP 67 (347)
T ss_dssp EEEEEEET----------TEEEEEEECTTSCEEEEETBTTEEEEEE-E--TTE--ESBCCCSSHHHHHHTCSCTTCEECS
T ss_pred eeehhcCc----------eeEEEEEECCCceEEEEEccCcEEEEEE-E--CCe--EEEEeCCCHHHHhhCCCeEeeEEcc
Confidence 44567874 3889999997689999999999999998 3 574 49999999999974 8999999
Q ss_pred ccceecc--------eeccCccCCCCCccccCCceec
Q psy11903 85 CEKKLGK--------VITPDNWKSGSRNTIESGGRRI 113 (179)
Q Consensus 85 c~~klg~--------va~pd~~k~~~~n~l~gG~~gi 113 (179)
+++||+. .+++++ |+ +.|++|||..|+
T Consensus 68 ~anRI~~g~f~~~G~~y~L~~-N~-~~n~lHGg~~g~ 102 (347)
T 1nsx_A 68 TAGRIKDGLVKISGKDYILNQ-NE-GPQTLHGGEESI 102 (347)
T ss_dssp BCSEEGGGEEEETTEEEECCC-CB-TTBEETTSTTCG
T ss_pred cCCcccCCEEEECCEEEEccC-CC-CCcccCCCCccc
Confidence 9999964 455553 44 689999997554
No 5
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=99.07 E-value=1.1e-10 Score=108.34 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=74.2
Q ss_pred ccccceeccCCCceecEEEEEEEcCCCeEEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhhh-----hhhcccccc
Q psy11903 12 DKFGECINESNGQVLPVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEIY-----FIMVCSKCE 86 (179)
Q Consensus 12 ~~FG~~~~~~~G~~~~v~~~tL~n~~gl~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~~-----~gmvc~kc~ 86 (179)
..|++.+ .+. ++..|+|+|+++++|+|++|||+|++|.++ | .||||||++.++|.. +|++.++++
T Consensus 362 ~~f~~~~---~~~--~~~~~~l~n~~~~~~~i~~~Ga~l~s~~~~---g--~~~v~~~~~~~~y~~~~~~~~g~~l~~~~ 431 (699)
T 1z45_A 362 ARFSAED---MRY--DARFVTIGAGTRFQATFANLGASIVDLKVN---G--QSVVLGYENEEGYLNPDSAYIGATIGRYA 431 (699)
T ss_dssp EEESSST---TCT--TSEEEEESTTSSEEEEEESBTTCEEEEEET---T--EECBCCCSSHHHHTCTTCCCTTCEECSBC
T ss_pred eccCCCC---CCc--ceEEEEEECCCceEEEEEccCeEEEEEeec---C--ceEEECCCCHHHHhhcCCCccccccCccc
Confidence 4677543 454 899999999658999999999999999984 5 499999999999983 889999999
Q ss_pred ceecc--------eeccCccCCCCCccccCCceecc
Q psy11903 87 KKLGK--------VITPDNWKSGSRNTIESGGRRIG 114 (179)
Q Consensus 87 ~klg~--------va~pd~~k~~~~n~l~gG~~gi~ 114 (179)
+||+. .+++++ |.+.|++|||.+|++
T Consensus 432 nRi~~g~f~~~G~~y~l~~--n~~~~~lHG~~~g~~ 465 (699)
T 1z45_A 432 NRISKGKFSLCNKDYQLTV--NNGVNANHSSIGSFH 465 (699)
T ss_dssp SEEGGGEEEETTEEEECCC--CBTTBEETTGGGCGG
T ss_pred CeecCcEEEECCEEEEccC--CCCCcccCCCccccc
Confidence 99964 455553 357899999987664
No 6
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae}
Probab=98.96 E-value=7.1e-10 Score=95.74 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=66.5
Q ss_pred cEEEEEEEcCCCeEEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhh----hhhhccccccceecc--------eec
Q psy11903 27 PVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEI----YFIMVCSKCEKKLGK--------VIT 94 (179)
Q Consensus 27 ~v~~~tL~n~~gl~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~----~~gmvc~kc~~klg~--------va~ 94 (179)
.+..|+|+|+++++|+|++|||+|++|.++ | ++|||||++.++|. ++|++..++++||+. .++
T Consensus 9 ~~~~~~l~n~~~~~~~i~~~GA~l~s~~~~---g--~~vl~~~~~~~~y~~~~~~~G~~l~p~~nRi~~g~f~~~G~~y~ 83 (342)
T 1yga_A 9 KYGVITIGDEKKFQATIAPLGATLVDLKVN---G--QSVVQGYSNVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGPHK 83 (342)
T ss_dssp TTCCEEEEETTTEEEEEETBTTEEEEEEET---T--EECBCCCSSGGGGTTCSSCTTCEECSBCSEEGGGEEEETTEEEE
T ss_pred eEEEEEEECCCCEEEEEECCCCEEEEEEEC---C--eeEEecCCChHHhccCCCeEccEECCCCCceeCCEEEECCEEEE
Confidence 788999999668999999999999999984 5 69999999999996 578888899999853 455
Q ss_pred cCccCCCCCccccCCceec
Q psy11903 95 PDNWKSGSRNTIESGGRRI 113 (179)
Q Consensus 95 pd~~k~~~~n~l~gG~~gi 113 (179)
+++ + .+.|.+|||.+|+
T Consensus 84 l~~-n-~~~~~lHG~~~g~ 100 (342)
T 1yga_A 84 LTV-N-NCGNTNHSSISSL 100 (342)
T ss_dssp CCC-C-BTTBEETTGGGCG
T ss_pred cCC-C-CCCcccCCCcccc
Confidence 553 3 4679999997655
No 7
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum}
Probab=98.41 E-value=8e-07 Score=76.91 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=61.0
Q ss_pred cEEEEEEEcCCCeEEEEe-cCCcEEEEEEeeCCCCcccceEeCcCC---chhhh----hhhhccccccceecc-------
Q psy11903 27 PVRRFTLTNSQRMSVQVI-DYGATITTIKVPDKRGNVDDVVLGFDD---MREEI----YFIMVCSKCEKKLGK------- 91 (179)
Q Consensus 27 ~v~~~tL~n~~gl~v~vl-nyGAtI~sl~vpdr~G~~~dVVLGfd~---~e~Y~----~~gmvc~kc~~klg~------- 91 (179)
....|+|+|+ +++|+|+ ++||+|++|++++ +| ++||+++++ +++|. ++|++..+.++||+.
T Consensus 17 g~~~~~L~n~-~~~~~i~p~~Ga~l~s~~~~~-~g--~~~l~~~~~~~~~~~y~~~~~~~G~pv~~p~nRi~~g~f~~~G 92 (341)
T 3os7_A 17 EHKCIRFAAG-GYEALIIPDVGGNVVELKDTN-KG--VTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGD 92 (341)
T ss_dssp TEEEEEEEET-TEEEEEETTTTTEEEEEEETT-TT--EECBCCCCTTCCHHHHHHSGGGSSCCEESSCSEEETTEEEETT
T ss_pred CEEEEEEeCC-CEEEEEchhcCCEEEEEEeCC-CC--CeEEEcCCcccchhhhhhCCcccceeEeCCCCcccCCEEEECC
Confidence 3678999996 7999999 8999999999975 35 799999998 67775 566766777888753
Q ss_pred -eeccCccCCC-CCccccCCce
Q psy11903 92 -VITPDNWKSG-SRNTIESGGR 111 (179)
Q Consensus 92 -va~pd~~k~~-~~n~l~gG~~ 111 (179)
.+.+++ +++ +.|.+||+-+
T Consensus 93 ~~y~l~~-N~~~~~~~lHG~~~ 113 (341)
T 3os7_A 93 KTYKFPI-NEAKNNNYIHGFIK 113 (341)
T ss_dssp EEEECCC-SBTTTTEEESCSGG
T ss_pred EEEEccC-CCCCCCcCccCCcc
Confidence 444443 333 5789999753
No 8
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Probab=98.30 E-value=1.3e-06 Score=74.86 Aligned_cols=79 Identities=6% Similarity=0.056 Sum_probs=61.4
Q ss_pred cEEEEEEEcCCCeEEEEe-cCCcEEEEEEeeCCCCcccceEeCcCCchhhh----hhhhccccccceecc--------ee
Q psy11903 27 PVRRFTLTNSQRMSVQVI-DYGATITTIKVPDKRGNVDDVVLGFDDMREEI----YFIMVCSKCEKKLGK--------VI 93 (179)
Q Consensus 27 ~v~~~tL~n~~gl~v~vl-nyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~----~~gmvc~kc~~klg~--------va 93 (179)
.+..|+|+|+ +++|+|+ ++||+|++|+++++ | .+|+++++++++|. ++|++..+.++||+. .+
T Consensus 13 g~~~~~L~n~-~~~~~i~p~~GA~l~s~~~~~~-g--~~~l~~~~~~~~~~~~~~~~G~pv~~p~nRi~~g~~~~~G~~y 88 (326)
T 3mwx_A 13 GTPAIKAGNE-HLEMIVVPEWGSNVISLVDKTT-N--VQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTY 88 (326)
T ss_dssp TEEEEEEEES-SEEEEEETTTTTEEEEEEETTT-T--EECBCCCSSHHHHHHCTTSSSCCEEBSCSEEETTEEEETTEEE
T ss_pred CeEEEEEECC-CEEEEEchhcCCEEEEEEecCC-C--ceEEccCcChhHhhcCccccCceEcCCCCcccCCEEEECCEEE
Confidence 4788999996 7999999 79999999998754 4 68999999999887 466766666899843 44
Q ss_pred ccCccCC-CCCccccCCc
Q psy11903 94 TPDNWKS-GSRNTIESGG 110 (179)
Q Consensus 94 ~pd~~k~-~~~n~l~gG~ 110 (179)
.+++ ++ .+.|.+||+-
T Consensus 89 ~l~~-N~~~~~~~lHG~~ 105 (326)
T 3mwx_A 89 HFDI-NEKDKHNHLHGFL 105 (326)
T ss_dssp ECCC-CBTTTTEEESBSC
T ss_pred EccC-CCCCCCccccCCc
Confidence 4443 33 2679999974
No 9
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Probab=97.93 E-value=1.2e-05 Score=68.27 Aligned_cols=75 Identities=8% Similarity=0.012 Sum_probs=56.3
Q ss_pred EEEEEEcCCCeEEEEecC-CcEEEEEEeeCCCCcccceEeCcCCc-hhhhhhhhccccccceecc--------eeccCcc
Q psy11903 29 RRFTLTNSQRMSVQVIDY-GATITTIKVPDKRGNVDDVVLGFDDM-REEIYFIMVCSKCEKKLGK--------VITPDNW 98 (179)
Q Consensus 29 ~~~tL~n~~gl~v~vlny-GAtI~sl~vpdr~G~~~dVVLGfd~~-e~Y~~~gmvc~kc~~klg~--------va~pd~~ 98 (179)
..|+|+|+ +++|+|+++ ||+|+++ . +| ++||++++.. ..+.+.+++|.+..+||.. .+.+++
T Consensus 3 ~~~~l~n~-~~~~~i~~~~Ga~l~s~--~--~g--~~vl~~~~~~~~~~~~~g~~l~p~~nRi~~g~~~~~G~~y~l~~- 74 (291)
T 3nre_A 3 TIYTLSHG-SLKLDVSDQGGVIEGFW--R--DT--TPLLRPGKKSGVATDASCFPLVPFANRVSGNRFVWQGREYQLQP- 74 (291)
T ss_dssp CEEEEEET-TEEEEEETBTTEEEEEE--E--TT--EESSCCCCCSSCGGGSSEEEEBSCCSBCGGGEEEETTEEEECCC-
T ss_pred cEEEEcCC-CEEEEEEcccCceEEEE--e--CC--CEEEECCCcccCccccCCcEEEeeCCEecCCEEEECCEEEECCC-
Confidence 36899996 899999996 9999999 3 56 7999999721 2234567899999999853 455553
Q ss_pred CCC-CCccccCCce
Q psy11903 99 KSG-SRNTIESGGR 111 (179)
Q Consensus 99 k~~-~~n~l~gG~~ 111 (179)
+++ ..|.+||+.+
T Consensus 75 N~~~~~~~~HG~~~ 88 (291)
T 3nre_A 75 NVEWDAHYLHGDGW 88 (291)
T ss_dssp CSTTCSSCBSBSGG
T ss_pred CCCCCCCCCCCchh
Confidence 443 2799999854
No 10
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei}
Probab=97.51 E-value=9.7e-05 Score=62.52 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=44.7
Q ss_pred EEEEEcCCCeEEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhh-hhhhccccccceecc
Q psy11903 30 RFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEI-YFIMVCSKCEKKLGK 91 (179)
Q Consensus 30 ~~tL~n~~gl~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~-~~gmvc~kc~~klg~ 91 (179)
.|+|+|+ +++|+|+++||+|++|++++ +| .+||++++ ++|. ..+.+|.+..+||..
T Consensus 2 ~~~l~n~-~~~~~i~~~Ga~l~s~~~~~-~g--~e~l~~~~--~~~~~~~~p~l~P~~~Ri~~ 58 (294)
T 3q1n_A 2 MITIENS-KFKAGIAERGAELQSLVNKA-DN--YEYVWTGD--KTFWNRHAPILFPSIGKSNQ 58 (294)
T ss_dssp EEEEECS-SEEEEEETBTTEEEEEEETT-TT--EECBCCCC--TTTCSCSCCEEBSCCSCCGG
T ss_pred EEEEECC-CEEEEEEccCcEEEEEEeCC-CC--CEEEEcCC--hhhccCCCCEEEeccCCcCC
Confidence 4789995 79999999999999999874 46 68999986 3444 345788888888853
No 11
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A
Probab=97.00 E-value=0.00081 Score=57.03 Aligned_cols=58 Identities=9% Similarity=-0.030 Sum_probs=42.9
Q ss_pred cEEEEEEEcCCCeEEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhhhh----h--hccccccceec
Q psy11903 27 PVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEIYF----I--MVCSKCEKKLG 90 (179)
Q Consensus 27 ~v~~~tL~n~~gl~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~~~----g--mvc~kc~~klg 90 (179)
.+..|+|+|+ +++|+|++|||+|+++++++ | ++|++++ +.++|... | .+|.+..+|++
T Consensus 40 ~~~~~~L~n~-~~~a~I~~~GA~l~s~~~~~--g--~evL~~~-~~~~~~~~~~~~GG~pil~P~~gRi~ 103 (309)
T 2hta_A 40 DLDLIVVDHP-QVKASFALQGAHLLSWKPVG--E--EEVLWLS-NNTPFKTGVALRGGVPICWPWFGPAA 103 (309)
T ss_dssp TEEEEEEEET-TEEEEEETBTTEEEEEEETT--S--CCCBCBC-TTCCCCTTCCCSBSBCEEBSCCSSCS
T ss_pred CceEEEEeCC-CeEEEEeccCcEEEEEEeCC--C--CEEEeCC-chHhccCCCCeeccceEEEecCCCCC
Confidence 4778999996 79999999999999999873 4 6776654 77777632 1 36666666654
No 12
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Probab=96.93 E-value=0.00099 Score=56.80 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=41.5
Q ss_pred EEEEEcCCCeEEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhh-hhhhccccccceecc
Q psy11903 30 RFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEI-YFIMVCSKCEKKLGK 91 (179)
Q Consensus 30 ~~tL~n~~gl~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~-~~gmvc~kc~~klg~ 91 (179)
.|+|+|+ +++|+|+++||+|++|. |++|. .+||++.+. .|. .-..+|.+..+||..
T Consensus 2 ~~~l~n~-~~~~~i~~~GA~l~s~~--~~~~~-~e~l~~~~~--~~~~~~~pil~P~~nRi~~ 58 (307)
T 3dcd_A 2 DYTIENN-MIKVVISDHGAEIQSVK--SAHTD-EEFMWQANP--EIWGRHAPVLFPIVGRLKN 58 (307)
T ss_dssp EEEEECS-SEEEEEETBTTEEEEEE--ETTTC-CBCBCCCCT--TTCCCSSCEEBSCSSCCGG
T ss_pred EEEEECC-CEEEEEEccCcEEEEEE--ECCCC-cEEEECCCh--hhcCCCCcEEEeecCccCC
Confidence 4789996 69999999999999998 43333 689998653 232 122688888888853
No 13
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A*
Probab=96.93 E-value=0.00057 Score=57.31 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=42.7
Q ss_pred cEEEEEEEcCCCe--EEEEecCCcEEEEEEeeCCCCcccceEeCcCCchhhhh----hh--hccccccceec
Q psy11903 27 PVRRFTLTNSQRM--SVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMREEIY----FI--MVCSKCEKKLG 90 (179)
Q Consensus 27 ~v~~~tL~n~~gl--~v~vlnyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~~----~g--mvc~kc~~klg 90 (179)
.+..|+|+|++++ +++|++|||+|+++++ +|. +|+++ .+.++|.. .| .+|.+..+|++
T Consensus 6 ~~~~~~L~n~~~~~~~~~i~~~Ga~l~s~~~---~G~--~vl~~-~~~~~~~~~~~~~GGip~l~P~~gr~~ 71 (297)
T 2cir_A 6 TDKEVVLTHPADETTSVHILKYGATVYSWKL---KSE--EQLWL-STAAKLDGSKPVRGGIPLVFPVFGKNS 71 (297)
T ss_dssp CSSEEEEEETTEEEEEEEEETBTTEEEEEEE---TTE--ECBCB-CTTCCCSSSSCCSBSBCEEBSCSSCCS
T ss_pred CCCEEEEeCCCCceeEEEEECCCcEEEEEEe---CCe--EEEec-CcHHHhcCCCCccCCCCEEEEecCCCC
Confidence 4668999997778 9999999999999998 363 77655 46777763 22 56666666553
No 14
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=96.38 E-value=0.0067 Score=50.92 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=42.6
Q ss_pred cEEEEEEEcCC-CeEEEEe-cCCcEEEEEEeeCCCCcccceEeCcCCchhhh------hhhh-ccccccceec
Q psy11903 27 PVRRFTLTNSQ-RMSVQVI-DYGATITTIKVPDKRGNVDDVVLGFDDMREEI------YFIM-VCSKCEKKLG 90 (179)
Q Consensus 27 ~v~~~tL~n~~-gl~v~vl-nyGAtI~sl~vpdr~G~~~dVVLGfd~~e~Y~------~~gm-vc~kc~~klg 90 (179)
.+..|+|+|+. |++++|+ ++||.|+++.+ +| ++|+ .++. ++|. ..|+ +|.+..+|++
T Consensus 10 ~~~~~~l~n~~~g~~~~v~~~~Ga~l~s~~~---~g--~~~l-~~~~-~~~~~~~~~~~gg~Pvl~P~~gri~ 75 (289)
T 3k25_A 10 RPLTYHLEDDQSLARLSLVPGRGGLVTEWTV---QG--QPIL-YFDR-ERFQDPSLSVRGGIPILFPICGNLP 75 (289)
T ss_dssp BCCEEEEEETTTTEEEEEEGGGTSEEEEEEE---TT--EECB-CBCT-TGGGSTTSCCCBSBCEEBSCSSCCG
T ss_pred CceEEEEECCCCCeEEEeehhcCCEEEEEEe---CC--EEEE-ecCh-hhccCcccccCCCCCEEECCCCCCC
Confidence 58889999974 8999999 89999999987 46 4765 4543 4443 2244 7888888875
No 15
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=87.87 E-value=0.099 Score=38.27 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=28.6
Q ss_pred ccchhhcccc--------cCCCccCcccccc----cCcccccCccccc
Q psy11903 135 SCKICRQKVH--------QVGSHYCQACAYK----KGICAMCGKKLLD 170 (179)
Q Consensus 135 ~c~~ck~~~~--------~~~~~yc~~cay~----~g~c~mcgk~~~d 170 (179)
+|..|++.+. .+|..||..|-.+ +|.|+.|++.|.+
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 7888887774 3467899999875 5699999999984
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.20 E-value=0.39 Score=30.86 Aligned_cols=37 Identities=19% Similarity=0.680 Sum_probs=28.5
Q ss_pred cccchhhcccccC-----CCccCccccc-----ccCcccccCccccc
Q psy11903 134 ESCKICRQKVHQV-----GSHYCQACAY-----KKGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~~~-----~~~yc~~cay-----~~g~c~mcgk~~~d 170 (179)
-.|.||...+..+ ||.||..|.. ....|.+|.+.+..
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4799998765443 8899999986 34579999998864
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=85.42 E-value=0.28 Score=32.36 Aligned_cols=36 Identities=31% Similarity=0.782 Sum_probs=28.3
Q ss_pred cccchhhccccc-----CCCccCcccccc-----------cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYK-----------KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~-----------~g~c~mcgk~~~ 169 (179)
-.|.||...... =||.||..|..+ ...|.+|...+.
T Consensus 13 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 478888765544 388999999874 668999999875
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.93 E-value=0.36 Score=31.95 Aligned_cols=36 Identities=31% Similarity=0.774 Sum_probs=29.1
Q ss_pred cccchhhccccc-----CCCccCcccccc----------cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~----------~g~c~mcgk~~~ 169 (179)
..|.||...+.. =||.||..|..+ ...|.+|.+.+.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 489999876543 388999999865 678999999876
No 19
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.74 E-value=0.22 Score=32.02 Aligned_cols=35 Identities=31% Similarity=0.789 Sum_probs=25.9
Q ss_pred ccchhhc-cc---------ccCCCccCccccccc-----CcccccCcccc
Q psy11903 135 SCKICRQ-KV---------HQVGSHYCQACAYKK-----GICAMCGKKLL 169 (179)
Q Consensus 135 ~c~~ck~-~~---------~~~~~~yc~~cay~~-----g~c~mcgk~~~ 169 (179)
.|.||.. .. ..=||.||..|.-+- ..|.+|++.+.
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred cCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 6888887 22 234889999997433 57999999885
No 20
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.61 E-value=0.47 Score=31.58 Aligned_cols=38 Identities=29% Similarity=0.583 Sum_probs=30.0
Q ss_pred cccchhhccccc-----CCCc-cCcccccccCcccccCcccccc
Q psy11903 134 ESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~-yc~~cay~~g~c~mcgk~~~d~ 171 (179)
..|.||...... =||. +|..|+-+...|.+|.+.|.++
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFK 69 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCc
Confidence 478899664433 3666 9999999999999999998764
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.31 E-value=0.39 Score=31.76 Aligned_cols=36 Identities=28% Similarity=0.750 Sum_probs=28.9
Q ss_pred cccchhhccccc-----CCCccCcccccc----------cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~----------~g~c~mcgk~~~ 169 (179)
-.|.||...+.. =||.||..|..+ ...|.+|...+.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 489999876544 388999999865 678999999876
No 22
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=82.22 E-value=0.3 Score=35.74 Aligned_cols=38 Identities=26% Similarity=0.655 Sum_probs=30.9
Q ss_pred cccchhhcccccCCCcc-Ccccc---cccCcccccCcccccc
Q psy11903 134 ESCKICRQKVHQVGSHY-CQACA---YKKGICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~~~~~~y-c~~ca---y~~g~c~mcgk~~~d~ 171 (179)
..|.+|.+.+.+.|..| |..|. -+.+.|+-|+.++--.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHH
Confidence 58999999987767777 88886 4568999999988643
No 23
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=80.90 E-value=0.54 Score=31.32 Aligned_cols=39 Identities=28% Similarity=0.581 Sum_probs=31.4
Q ss_pred cccchhhccccc-----CCCc-cCcccccccCcccccCccccccc
Q psy11903 134 ESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDVK 172 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~-yc~~cay~~g~c~mcgk~~~d~~ 172 (179)
..|.||...... =||. +|..|+.+-..|.+|-+.+...-
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQ 69 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEE
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcE
Confidence 479999875543 3777 99999999999999999987653
No 24
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=80.74 E-value=0.76 Score=29.40 Aligned_cols=38 Identities=24% Similarity=0.638 Sum_probs=28.6
Q ss_pred cccchhhcccccC------CCccCcccccc----cCcccccCcccccc
Q psy11903 134 ESCKICRQKVHQV------GSHYCQACAYK----KGICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~~~------~~~yc~~cay~----~g~c~mcgk~~~d~ 171 (179)
..|.||......+ ||.||..|..+ ...|.+|.+.+...
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 4788887765442 78899999853 67899999988654
No 25
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.29 E-value=1.1 Score=28.05 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=26.4
Q ss_pred cccchhhcccccC-----CCccCcccccc-cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQV-----GSHYCQACAYK-KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~~-----~~~yc~~cay~-~g~c~mcgk~~~ 169 (179)
-.|.||......+ ||.||..|..+ ...|.+|.+.+.
T Consensus 7 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp SSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred CCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence 3677777654433 78999999875 347999998865
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=78.63 E-value=0.35 Score=32.04 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=27.2
Q ss_pred cccchhhccccc-----CCCccCcccccc-----cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~-----~g~c~mcgk~~~ 169 (179)
-.|.||..-+.. -||.||..|..+ ...|.+|++.+.
T Consensus 9 ~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 478888765443 389999999642 568999999885
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.76 E-value=0.48 Score=30.78 Aligned_cols=36 Identities=22% Similarity=0.664 Sum_probs=27.6
Q ss_pred cccchhhccccc-----CCCccCccccccc-------CcccccCcccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYKK-------GICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~~-------g~c~mcgk~~~ 169 (179)
..|.||...+.. =||.||..|..+- ..|.+|.+.+.
T Consensus 21 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 489999876543 3889999998542 37999999875
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=75.56 E-value=0.79 Score=31.19 Aligned_cols=36 Identities=25% Similarity=0.734 Sum_probs=27.2
Q ss_pred cccchhhcccccC------CCccCccccccc------CcccccCcccc
Q psy11903 134 ESCKICRQKVHQV------GSHYCQACAYKK------GICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~~------~~~yc~~cay~~------g~c~mcgk~~~ 169 (179)
-.|.||...+..+ ||.||..|...- -.|.+|.+.+.
T Consensus 14 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4799998755432 899999997432 48999999874
No 29
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=75.26 E-value=0.99 Score=31.79 Aligned_cols=34 Identities=26% Similarity=0.923 Sum_probs=16.6
Q ss_pred ccchhhcccccCCCcc-Ccccc--c-ccCcccccCccc
Q psy11903 135 SCKICRQKVHQVGSHY-CQACA--Y-KKGICAMCGKKL 168 (179)
Q Consensus 135 ~c~~ck~~~~~~~~~y-c~~ca--y-~~g~c~mcgk~~ 168 (179)
.|..|.+.+.+.+..+ |..|. | +.+.|.-||.++
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCccccCCCceECccccccCCCcccCcchhhHH
Confidence 4555555554444343 55554 2 223555555554
No 30
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.04 E-value=1.9 Score=28.36 Aligned_cols=39 Identities=18% Similarity=0.534 Sum_probs=30.7
Q ss_pred Ccccchhhccccc-----CCCc-cCcccccccCcccccCcccccc
Q psy11903 133 FESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 171 (179)
Q Consensus 133 ~~~c~~ck~~~~~-----~~~~-yc~~cay~~g~c~mcgk~~~d~ 171 (179)
...|.||...... =||. +|..|+-....|.+|-..|.++
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQES 59 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCE
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhce
Confidence 4589999764432 3566 8999999999999999999764
No 31
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.79 E-value=0.38 Score=32.20 Aligned_cols=36 Identities=28% Similarity=0.672 Sum_probs=28.1
Q ss_pred cccchhhcccccC-----CCccCcccccc----cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQV-----GSHYCQACAYK----KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~~-----~~~yc~~cay~----~g~c~mcgk~~~ 169 (179)
-.|.||...+..+ ||.||..|..+ ...|.+|.+.+.
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3799998765543 88999999843 467999999975
No 32
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=72.80 E-value=1.7 Score=28.57 Aligned_cols=38 Identities=18% Similarity=0.600 Sum_probs=28.6
Q ss_pred cccchhhcccc--------cCCCccCccccc----ccCcccccCcccccc
Q psy11903 134 ESCKICRQKVH--------QVGSHYCQACAY----KKGICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~--------~~~~~yc~~cay----~~g~c~mcgk~~~d~ 171 (179)
..|.||...+. .=||.||..|.. ....|.+|.+.+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 47999965543 337889999986 467899999988743
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.31 E-value=0.92 Score=31.79 Aligned_cols=36 Identities=22% Similarity=0.742 Sum_probs=26.9
Q ss_pred cccchhhcccccC-----CCccCcccccc---c----CcccccCcccc
Q psy11903 134 ESCKICRQKVHQV-----GSHYCQACAYK---K----GICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~~-----~~~yc~~cay~---~----g~c~mcgk~~~ 169 (179)
-.|.||......+ ||.||..|..+ . ..|.+|...+.
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 3788888765443 88999999742 1 27999999876
No 34
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=72.03 E-value=0.95 Score=34.34 Aligned_cols=37 Identities=27% Similarity=0.696 Sum_probs=28.3
Q ss_pred cccchhhcccc------cCCCccCcccccc-----cCcccccCccccc
Q psy11903 134 ESCKICRQKVH------QVGSHYCQACAYK-----KGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~------~~~~~yc~~cay~-----~g~c~mcgk~~~d 170 (179)
-.|.||...+. .=||.||..|..+ ...|.+|.+.+..
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 37999976443 3488999999854 5689999999854
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=71.18 E-value=1.4 Score=31.35 Aligned_cols=36 Identities=19% Similarity=0.620 Sum_probs=26.9
Q ss_pred cccchhhccccc-----CCCccCcccccc-----cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~-----~g~c~mcgk~~~ 169 (179)
-.|.||...+.. =||.||..|..+ ...|.+|.+.+.
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 368888765443 378899999754 458999999875
No 36
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=70.76 E-value=0.79 Score=33.27 Aligned_cols=35 Identities=29% Similarity=0.822 Sum_probs=20.2
Q ss_pred ccchhhccccc--------CCCccCccccccc----CcccccCcccc
Q psy11903 135 SCKICRQKVHQ--------VGSHYCQACAYKK----GICAMCGKKLL 169 (179)
Q Consensus 135 ~c~~ck~~~~~--------~~~~yc~~cay~~----g~c~mcgk~~~ 169 (179)
+|..|++.+.. +|..||..|-.+. ++|+.|++.|.
T Consensus 31 ~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 31 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp BCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred ccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 56666665531 3455677665542 26777777665
No 37
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=70.41 E-value=0.91 Score=33.61 Aligned_cols=35 Identities=26% Similarity=0.724 Sum_probs=26.9
Q ss_pred ccchhhccccc-----CCCccCccccc----ccCcccccCcccc
Q psy11903 135 SCKICRQKVHQ-----VGSHYCQACAY----KKGICAMCGKKLL 169 (179)
Q Consensus 135 ~c~~ck~~~~~-----~~~~yc~~cay----~~g~c~mcgk~~~ 169 (179)
.|.||...... =||.||..|.. .+..|++|.+.+.
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 68888765432 38899999975 3578999998875
No 38
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp}
Probab=69.98 E-value=10 Score=32.95 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=29.6
Q ss_pred CCceecEEEEEEEcCCCeEEEEec-CCcEEEEEEe
Q psy11903 22 NGQVLPVRRFTLTNSQRMSVQVID-YGATITTIKV 55 (179)
Q Consensus 22 ~G~~~~v~~~tL~n~~gl~v~vln-yGAtI~sl~v 55 (179)
+|..+.++.++|+|+.||+++|+. .|+.|.++.+
T Consensus 42 ~G~~~G~~~l~i~ng~gl~~~VlP~rG~dI~~~~~ 76 (384)
T 3ty1_A 42 GGKQEGSKILTIHSKDGLTITLSPTRGMNLLRIEG 76 (384)
T ss_dssp SGGGTTCEEEEEEESSSCEEEEEGGGTTEEEEEEE
T ss_pred CCCccCeEEEEEECCCccEEEEecccCCcceeEEE
Confidence 555557999999997689999999 6999999998
No 39
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=69.21 E-value=1.3 Score=30.63 Aligned_cols=35 Identities=20% Similarity=0.565 Sum_probs=25.9
Q ss_pred ccchhhccccc------CCCccCccccccc--CcccccCcccc
Q psy11903 135 SCKICRQKVHQ------VGSHYCQACAYKK--GICAMCGKKLL 169 (179)
Q Consensus 135 ~c~~ck~~~~~------~~~~yc~~cay~~--g~c~mcgk~~~ 169 (179)
+|..|++.+.. +|..||..|..+. -.|+.|++.|.
T Consensus 35 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 35 RCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 67777766532 3567899987654 58999999998
No 40
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.72 E-value=2.6 Score=27.78 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=7.5
Q ss_pred cccccCccccccc
Q psy11903 160 ICAMCGKKLLDVK 172 (179)
Q Consensus 160 ~c~mcgk~~~d~~ 172 (179)
.|+.|++.+.+..
T Consensus 43 ~C~~C~~~L~~~~ 55 (80)
T 1x3h_A 43 VCGDCFTSFSTGS 55 (80)
T ss_dssp BCSSSCCBSCSSC
T ss_pred ChhhCCCCCCCCc
Confidence 4666666665543
No 41
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=68.00 E-value=0.95 Score=32.67 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=8.0
Q ss_pred hccccccceec
Q psy11903 80 MVCSKCEKKLG 90 (179)
Q Consensus 80 mvc~kc~~klg 90 (179)
..|.+|.+.|.
T Consensus 4 ~~C~~C~~~I~ 14 (126)
T 2xqn_T 4 PRCAGCDELIF 14 (126)
T ss_dssp CBBTTTSSBCC
T ss_pred CCCccCCCEeC
Confidence 56788887775
No 42
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.74 E-value=2.7 Score=27.67 Aligned_cols=11 Identities=18% Similarity=0.679 Sum_probs=7.1
Q ss_pred cccchhhcccc
Q psy11903 134 ESCKICRQKVH 144 (179)
Q Consensus 134 ~~c~~ck~~~~ 144 (179)
.+|..|.+.|.
T Consensus 16 ~~C~~C~~~I~ 26 (80)
T 2cuq_A 16 PRCARCSKTLT 26 (80)
T ss_dssp CCCTTTCCCCC
T ss_pred CcCCCCCCEec
Confidence 46677766664
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=67.29 E-value=1.8 Score=29.43 Aligned_cols=37 Identities=24% Similarity=0.741 Sum_probs=29.1
Q ss_pred cccchhhccccc---------CCCccCcccccc-----cCcccccCccccc
Q psy11903 134 ESCKICRQKVHQ---------VGSHYCQACAYK-----KGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~~---------~~~~yc~~cay~-----~g~c~mcgk~~~d 170 (179)
..|.||-..+.. =||.+|+.|..+ .+.|.+|-+.+.+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 479999887753 489999999643 4689999998764
No 44
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli}
Probab=67.20 E-value=5.4 Score=32.90 Aligned_cols=29 Identities=7% Similarity=0.237 Sum_probs=24.8
Q ss_pred EEEEEEEcCCCeEEEEecCCcEEEEEEeeC
Q psy11903 28 VRRFTLTNSQRMSVQVIDYGATITTIKVPD 57 (179)
Q Consensus 28 v~~~tL~n~~gl~v~vlnyGAtI~sl~vpd 57 (179)
.++++|+++ -++++|.+.||+|.++.|++
T Consensus 3 ~~~i~v~td-~l~~~is~~GG~I~~~~Lk~ 31 (280)
T 3bs6_A 3 GKLISVKTD-VLDLTINTRGGDVEQALLPA 31 (280)
T ss_dssp -CEEEEECS-SCEEEEETBTTEEEEEEEEE
T ss_pred CCEEEEECC-cEEEEEECCCCeEeeeEcCC
Confidence 346899996 79999999999999999854
No 45
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=67.16 E-value=1.3 Score=32.02 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=27.8
Q ss_pred cccchhhcccc-----cCCCccCccccc-----ccCcccccCccccc
Q psy11903 134 ESCKICRQKVH-----QVGSHYCQACAY-----KKGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~-----~~~~~yc~~cay-----~~g~c~mcgk~~~d 170 (179)
-.|.||...+. .=||.||..|.. ....|.+|.+.+..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 37999976543 338889999984 33489999998864
No 46
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=66.95 E-value=0.95 Score=28.70 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=21.3
Q ss_pred ccCCCcccCcccchhhcccccCCCccCcccccc
Q psy11903 125 RFNPYTQKFESCKICRQKVHQVGSHYCQACAYK 157 (179)
Q Consensus 125 ~~~p~~~~~~~c~~ck~~~~~~~~~yc~~cay~ 157 (179)
||.+.......|..|+..|.| | -.|..|.|.
T Consensus 6 rF~~~t~~~t~C~~C~k~i~~-G-~kC~~Ck~~ 36 (49)
T 1kbe_A 6 RFSTKSWLSQVCNVCQKSMIF-G-VKCKHCRLK 36 (49)
T ss_dssp CEEEECCSSCCCSSSCCSSCC-E-EEETTTTEE
T ss_pred ccCccCCCCcCccccCceeEC-c-CCCCCCCCc
Confidence 333333224689999999987 5 678888774
No 47
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=66.05 E-value=1.7 Score=33.14 Aligned_cols=11 Identities=18% Similarity=0.769 Sum_probs=7.8
Q ss_pred hccccccceec
Q psy11903 80 MVCSKCEKKLG 90 (179)
Q Consensus 80 mvc~kc~~klg 90 (179)
.+|..|.+.|.
T Consensus 7 ~~C~~C~~~I~ 17 (169)
T 2rgt_A 7 PMCAGCDQHIL 17 (169)
T ss_dssp CBBSSSSSBCC
T ss_pred CccccCCCccC
Confidence 46777877765
No 48
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=64.34 E-value=3.6 Score=26.87 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=10.7
Q ss_pred ccCccccccc--CcccccCcccc
Q psy11903 149 HYCQACAYKK--GICAMCGKKLL 169 (179)
Q Consensus 149 ~yc~~cay~~--g~c~mcgk~~~ 169 (179)
.||..|-++. .+|+.|++.|.
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~ 26 (77)
T 2egq_A 4 GSSGDCYKNFVAKKCAGCKNPIT 26 (77)
T ss_dssp SCCTTCCCSCCCCCCSSSCCCCC
T ss_pred eEchhHhchhhCccCcccCCccc
Confidence 4555554432 34555555555
No 49
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.03 E-value=1.7 Score=26.58 Aligned_cols=31 Identities=29% Similarity=0.917 Sum_probs=21.8
Q ss_pred cccchhhcccccC-----CCccCcccccc-------cCccccc
Q psy11903 134 ESCKICRQKVHQV-----GSHYCQACAYK-------KGICAMC 164 (179)
Q Consensus 134 ~~c~~ck~~~~~~-----~~~yc~~cay~-------~g~c~mc 164 (179)
..|.||...+..+ ||.||..|..+ ...|.+|
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4788888776554 78889888643 3467666
No 50
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=63.55 E-value=5.8 Score=33.61 Aligned_cols=38 Identities=8% Similarity=0.227 Sum_probs=29.7
Q ss_pred EEEEEEEcCCCeEEEEecCCcEEEEEEeeC---C-CCcccceEe
Q psy11903 28 VRRFTLTNSQRMSVQVIDYGATITTIKVPD---K-RGNVDDVVL 67 (179)
Q Consensus 28 v~~~tL~n~~gl~v~vlnyGAtI~sl~vpd---r-~G~~~dVVL 67 (179)
.++++|+|+ -++++|.+.||+|.++.|++ . +.. .+|+|
T Consensus 34 ~~~i~V~td-~l~~~is~~GG~I~~~~Lk~Y~~~~~~~-~pv~L 75 (330)
T 3blc_A 34 GKLISVKTD-VLDLTINTRGGDVEQALLPAYPKELNST-QPFQL 75 (330)
T ss_dssp CCEEEEECS-SCEEEEETBTCCEEEEEEEEEESSTTCS-SEEEE
T ss_pred CCEEEEECC-cEEEEEECCCCEEeEEECCCCcccccCC-CCeEE
Confidence 467999996 79999999999999999854 1 122 46777
No 51
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.18 E-value=0.85 Score=28.96 Aligned_cols=37 Identities=30% Similarity=0.723 Sum_probs=27.5
Q ss_pred Ccccchhhcccc------------cCCCccCcccccc----cCcccccCcccc
Q psy11903 133 FESCKICRQKVH------------QVGSHYCQACAYK----KGICAMCGKKLL 169 (179)
Q Consensus 133 ~~~c~~ck~~~~------------~~~~~yc~~cay~----~g~c~mcgk~~~ 169 (179)
...|.||...+. .=||.||..|..+ ...|.+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 357999977543 3488899999853 568999998764
No 52
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=63.01 E-value=3.4 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.639 Sum_probs=24.2
Q ss_pred cccchhhccccc---------CCCccCcccccc----cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQ---------VGSHYCQACAYK----KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~---------~~~~yc~~cay~----~g~c~mcgk~~~ 169 (179)
..|.||...+.. =||.||..|..+ +..|.+|-+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 356666554322 367888888753 678999987653
No 53
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.46 E-value=1.3 Score=28.72 Aligned_cols=37 Identities=24% Similarity=0.661 Sum_probs=28.0
Q ss_pred cccchhhccccc-----CCCccCcccccc----cCcccccCccccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYK----KGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~----~g~c~mcgk~~~d 170 (179)
..|.||...+.. =||.||..|..+ ...|.+|.+.+..
T Consensus 16 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 479999776544 388899999753 3689999998763
No 54
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=62.28 E-value=1.8 Score=33.46 Aligned_cols=33 Identities=21% Similarity=0.599 Sum_probs=19.5
Q ss_pred cccchhhccccc-------CCCccCcccccccCcccccCccccc
Q psy11903 134 ESCKICRQKVHQ-------VGSHYCQACAYKKGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~~-------~~~~yc~~cay~~g~c~mcgk~~~d 170 (179)
.+|..|.+.+.. .+..|...|- .|+.|++.+.+
T Consensus 120 ~kC~~C~~~I~~~~~v~~a~~~~~H~~CF----~C~~C~~~L~~ 159 (182)
T 2jtn_A 120 TKCAACQLGIPPTQVVRRAQDFVYHLHCF----ACVVCKRQLAT 159 (182)
T ss_dssp CCCTTTCCCCCSSCCCCEETTEECCTTTC----CCTTTCCCCCT
T ss_pred cccccCCCccCCCceEEecCCCCEEeCCC----cCCCCCCCCCC
Confidence 477777776632 1334555554 67777777653
No 55
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=61.67 E-value=2.8 Score=26.49 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=16.5
Q ss_pred cccchhhcccccCCCccCcccc
Q psy11903 134 ESCKICRQKVHQVGSHYCQACA 155 (179)
Q Consensus 134 ~~c~~ck~~~~~~~~~yc~~ca 155 (179)
=+|..|+ +...|-.-||+.|-
T Consensus 14 WkC~~C~-~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 14 WKCTSCN-EMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTC-CEECSSCSSCTTTC
T ss_pred Eeccccc-ccCCCccchhhHHH
Confidence 3899999 55666789999994
No 56
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=61.18 E-value=1.8 Score=29.87 Aligned_cols=37 Identities=30% Similarity=0.699 Sum_probs=27.4
Q ss_pred cccchhhcccc------cCCCccCcccccc----cCcccccCccccc
Q psy11903 134 ESCKICRQKVH------QVGSHYCQACAYK----KGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~------~~~~~yc~~cay~----~g~c~mcgk~~~d 170 (179)
-.|.||...+. .=||.||..|..+ +..|.+|...+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 37888876532 3488899999743 5689999998763
No 57
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.98 E-value=2.4 Score=27.47 Aligned_cols=37 Identities=19% Similarity=0.606 Sum_probs=28.3
Q ss_pred cccchhhcccc------cCCCccCcccccc----cCcccccCccccc
Q psy11903 134 ESCKICRQKVH------QVGSHYCQACAYK----KGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~------~~~~~yc~~cay~----~g~c~mcgk~~~d 170 (179)
..|.||...+. .=||.||..|..+ ...|.+|.+.+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 47999977543 4478899999743 5689999998864
No 58
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.73 E-value=2.3 Score=27.57 Aligned_cols=43 Identities=19% Similarity=0.624 Sum_probs=31.4
Q ss_pred cccchhhcccc--------cCCCccCcccccc----cCcccccCccccccccccc
Q psy11903 134 ESCKICRQKVH--------QVGSHYCQACAYK----KGICAMCGKKLLDVKNYKQ 176 (179)
Q Consensus 134 ~~c~~ck~~~~--------~~~~~yc~~cay~----~g~c~mcgk~~~d~~~~~~ 176 (179)
..|.||...+. .=+|.||..|..+ +..|.+|-+.+.++.....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCCC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccccCC
Confidence 47888877653 2367788889753 5689999999987765443
No 59
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=60.70 E-value=1.1 Score=28.01 Aligned_cols=37 Identities=30% Similarity=0.749 Sum_probs=26.7
Q ss_pred cccchhhcccc------------cCCCccCccccc----ccCcccccCccccc
Q psy11903 134 ESCKICRQKVH------------QVGSHYCQACAY----KKGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~------------~~~~~yc~~cay----~~g~c~mcgk~~~d 170 (179)
..|.||...+. .=||.||..|.. ....|.+|.+.+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 36777766432 347889999975 36689999988763
No 60
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=60.27 E-value=1.1 Score=28.68 Aligned_cols=37 Identities=30% Similarity=0.749 Sum_probs=27.9
Q ss_pred cccchhhcccc------------cCCCccCccccc----ccCcccccCccccc
Q psy11903 134 ESCKICRQKVH------------QVGSHYCQACAY----KKGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~------------~~~~~yc~~cay----~~g~c~mcgk~~~d 170 (179)
..|.||...+. .=||.||..|.. .+..|.+|.+.+..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 47999986543 237889999984 45699999988763
No 61
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.17 E-value=4.7 Score=26.60 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=19.8
Q ss_pred CcccchhhcccccCCCccCccccccc--CcccccCccccc
Q psy11903 133 FESCKICRQKVHQVGSHYCQACAYKK--GICAMCGKKLLD 170 (179)
Q Consensus 133 ~~~c~~ck~~~~~~~~~yc~~cay~~--g~c~mcgk~~~d 170 (179)
..+|..|.+.|.. ...--..-.|.. -.|+.|++.|.+
T Consensus 15 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTG-PFMVAGEFKYHPECFACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCS-CCBCCTTCCBCTTSCBCTTTCCBCCT
T ss_pred CCcCccCCCCcCc-eEEEECCceeccccCCccCCCCccCC
Confidence 3478888888772 321111111211 157888888764
No 62
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=59.83 E-value=3 Score=27.88 Aligned_cols=36 Identities=33% Similarity=0.745 Sum_probs=26.9
Q ss_pred Ccccchhhc-ccccCCCccCcccccccCcccccCccccc
Q psy11903 133 FESCKICRQ-KVHQVGSHYCQACAYKKGICAMCGKKLLD 170 (179)
Q Consensus 133 ~~~c~~ck~-~~~~~~~~yc~~cay~~g~c~mcgk~~~d 170 (179)
...|.||.. +......|-|..|--+ .||.||-++.-
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk~r--~CaRCGg~v~l 45 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQTK--FCARCGGRVSL 45 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTCCE--ECTTSEEEEES
T ss_pred cchhhhhccceeccCCCccccccCCe--eecccCCEeee
Confidence 358999954 6666567888887544 89999988763
No 63
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=58.72 E-value=2.7 Score=26.86 Aligned_cols=37 Identities=22% Similarity=0.537 Sum_probs=26.9
Q ss_pred cccchhhcccc--------cCCCccCccccc----ccCcccccCccccc
Q psy11903 134 ESCKICRQKVH--------QVGSHYCQACAY----KKGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~--------~~~~~yc~~cay----~~g~c~mcgk~~~d 170 (179)
..|.||...+. .=||.||..|.. ....|.+|-..+..
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 47888865442 237789999986 35789999988753
No 64
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.54 E-value=3 Score=27.20 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=28.6
Q ss_pred CcccchhhcccccC--------CCccCccccc----ccCcccccCccccc
Q psy11903 133 FESCKICRQKVHQV--------GSHYCQACAY----KKGICAMCGKKLLD 170 (179)
Q Consensus 133 ~~~c~~ck~~~~~~--------~~~yc~~cay----~~g~c~mcgk~~~d 170 (179)
...|.||-..+... +|.||..|.. ....|.+|-..+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45899999766543 7788999975 35689999887754
No 65
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.53 E-value=2.2 Score=28.36 Aligned_cols=36 Identities=28% Similarity=0.653 Sum_probs=27.4
Q ss_pred cccchhhccccc---------CCCccCcccccc-------cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQ---------VGSHYCQACAYK-------KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~---------~~~~yc~~cay~-------~g~c~mcgk~~~ 169 (179)
..|.||...... =||.||..|..+ ...|.+|.+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 478888876544 388999999753 268999999764
No 66
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=58.18 E-value=3.2 Score=26.86 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=16.3
Q ss_pred cccchhhcccccCCCccCcccc
Q psy11903 134 ESCKICRQKVHQVGSHYCQACA 155 (179)
Q Consensus 134 ~~c~~ck~~~~~~~~~yc~~ca 155 (179)
-+|..|+ +...|-.-||+.|-
T Consensus 12 WkC~~C~-k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 12 WQCTECK-KFNSPSKRYCFRCW 32 (53)
T ss_dssp EECSSSC-CEECSSCCBCTTTC
T ss_pred eeccccc-ccCCCccchhHHHH
Confidence 3899999 55555779999994
No 67
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.76 E-value=2.9 Score=26.25 Aligned_cols=31 Identities=26% Similarity=0.752 Sum_probs=22.3
Q ss_pred cccchhhcccccC-----CCccCcccccc-------cCccccc
Q psy11903 134 ESCKICRQKVHQV-----GSHYCQACAYK-------KGICAMC 164 (179)
Q Consensus 134 ~~c~~ck~~~~~~-----~~~yc~~cay~-------~g~c~mc 164 (179)
..|.||...+..+ ||.||..|..+ ...|.+|
T Consensus 21 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4899998876554 88999999742 2357766
No 68
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.58 E-value=6.3 Score=25.93 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=20.6
Q ss_pred CcccchhhcccccCCCccC--ccccccc--CcccccCccccccc
Q psy11903 133 FESCKICRQKVHQVGSHYC--QACAYKK--GICAMCGKKLLDVK 172 (179)
Q Consensus 133 ~~~c~~ck~~~~~~~~~yc--~~cay~~--g~c~mcgk~~~d~~ 172 (179)
..+|..|.+.|...+ .+- ..-.|.. -.|+.|++.|.+..
T Consensus 15 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~ 57 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD-QNVEYKGTVWHKDCFTCSNCKQVIGTGS 57 (82)
T ss_dssp SCBCSSSCCBCCSSS-CEEECSSCEEETTTCCCSSSCCCCTTSC
T ss_pred CCcCccCCcccccCc-eEEEECccccccccCchhhCCCccCCCc
Confidence 357888888777532 210 1111211 15777887776553
No 69
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=57.47 E-value=3.5 Score=26.95 Aligned_cols=37 Identities=24% Similarity=0.718 Sum_probs=26.7
Q ss_pred cccchhhccccc------CCCccCccccccc------CcccccCccccc
Q psy11903 134 ESCKICRQKVHQ------VGSHYCQACAYKK------GICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~~------~~~~yc~~cay~~------g~c~mcgk~~~d 170 (179)
-.|.||...+.. =||.||..|...- ..|.+|.+.+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 478888775433 2899999997321 489999997653
No 70
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=57.47 E-value=1.5 Score=34.06 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=7.1
Q ss_pred hccccccceec
Q psy11903 80 MVCSKCEKKLG 90 (179)
Q Consensus 80 mvc~kc~~klg 90 (179)
.+|..|.+.|.
T Consensus 6 ~~C~~C~~~I~ 16 (188)
T 1rut_X 6 KRCAGCGGKIA 16 (188)
T ss_dssp CBBTTTCCBCC
T ss_pred CcCccCCCEeC
Confidence 45777776664
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=57.29 E-value=4 Score=27.47 Aligned_cols=38 Identities=24% Similarity=0.663 Sum_probs=29.9
Q ss_pred cccchhhccccc-----CCCc-cCcccccccCcccccCcccccc
Q psy11903 134 ESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~-yc~~cay~~g~c~mcgk~~~d~ 171 (179)
..|.||...... =||. +|..|+..--.|.+|-..|..+
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCe
Confidence 479999764433 3666 8999999888999999998764
No 72
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.81 E-value=6.3 Score=26.01 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=5.2
Q ss_pred cccccCccccc
Q psy11903 160 ICAMCGKKLLD 170 (179)
Q Consensus 160 ~c~mcgk~~~d 170 (179)
.|+.|++.|.+
T Consensus 45 ~C~~C~~~L~~ 55 (82)
T 2ehe_A 45 RCCRCQRSLAD 55 (82)
T ss_dssp BCTTTCCBCSS
T ss_pred eecCCCCccCC
Confidence 34555555443
No 73
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.12 E-value=7.2 Score=25.71 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred CcccchhhcccccCCCccCccccccc--CcccccCcccccccc
Q psy11903 133 FESCKICRQKVHQVGSHYCQACAYKK--GICAMCGKKLLDVKN 173 (179)
Q Consensus 133 ~~~c~~ck~~~~~~~~~yc~~cay~~--g~c~mcgk~~~d~~~ 173 (179)
..+|..|.+.|... ..-=..-.|.. -.|+.|++.|.+...
T Consensus 15 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f 56 (81)
T 2dlo_A 15 LEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPF 56 (81)
T ss_dssp CCBCTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCTTSCE
T ss_pred CCccccCCCeecce-eEEECCccccHHhcCcccCCCccCCCee
Confidence 45788888877642 11000111111 157788877765443
No 74
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=53.28 E-value=3.2 Score=29.09 Aligned_cols=37 Identities=16% Similarity=0.595 Sum_probs=27.9
Q ss_pred cccchhhcccc------cCCCccCcccccc----cCcccccCccccc
Q psy11903 134 ESCKICRQKVH------QVGSHYCQACAYK----KGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~------~~~~~yc~~cay~----~g~c~mcgk~~~d 170 (179)
-.|.||...+. .=||.||..|..+ ...|.+|.+.+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 37888876432 4588999999754 3789999998874
No 75
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=52.92 E-value=2.8 Score=30.90 Aligned_cols=27 Identities=26% Similarity=0.731 Sum_probs=20.4
Q ss_pred CcccCcccchhhcccccCCCccCcccc
Q psy11903 129 YTQKFESCKICRQKVHQVGSHYCQACA 155 (179)
Q Consensus 129 ~~~~~~~c~~ck~~~~~~~~~yc~~ca 155 (179)
|+.+..+|.+|........+.||..|-
T Consensus 53 ~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 53 FGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp TSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred CCCcCCceEEcCCCCCcccceehHhhh
Confidence 444567999999665555689999986
No 76
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=52.77 E-value=5.1 Score=26.46 Aligned_cols=32 Identities=28% Similarity=0.600 Sum_probs=14.5
Q ss_pred ccchhhccccc------CCCccCccccccc--CcccccCc
Q psy11903 135 SCKICRQKVHQ------VGSHYCQACAYKK--GICAMCGK 166 (179)
Q Consensus 135 ~c~~ck~~~~~------~~~~yc~~cay~~--g~c~mcgk 166 (179)
+|..|+..+.. ++..||..|-.+. -.|+.||.
T Consensus 36 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~ 75 (81)
T 1a7i_A 36 LCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQ 75 (81)
T ss_dssp ECSSSCCEECSSCCEEETTEEECSHHHHHHCC--------
T ss_pred ccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCC
Confidence 67777766543 2456777776543 45766664
No 77
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.75 E-value=7.7 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=17.8
Q ss_pred cccchhhcccccCCCccCccccccc--CcccccCccccccc
Q psy11903 134 ESCKICRQKVHQVGSHYCQACAYKK--GICAMCGKKLLDVK 172 (179)
Q Consensus 134 ~~c~~ck~~~~~~~~~yc~~cay~~--g~c~mcgk~~~d~~ 172 (179)
.+|..|.+.|.. ...--..-.|.. -.|+.|++.|.+..
T Consensus 16 ~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSS
T ss_pred CcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCC
Confidence 467777776662 211111111111 14677777765443
No 78
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=51.69 E-value=7.4 Score=33.64 Aligned_cols=38 Identities=29% Similarity=0.660 Sum_probs=31.5
Q ss_pred cccchhhcccc-----cCCCc-cCcccccccCcccccCcccccc
Q psy11903 134 ESCKICRQKVH-----QVGSH-YCQACAYKKGICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~-----~~~~~-yc~~cay~~g~c~mcgk~~~d~ 171 (179)
..|.||-.... .=||. +|..|+..-..|.+|-..|..+
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGT 339 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEE
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCe
Confidence 57999987543 34788 9999999999999999998754
No 79
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=51.12 E-value=3.5 Score=29.43 Aligned_cols=38 Identities=29% Similarity=0.697 Sum_probs=28.6
Q ss_pred cccchhhccccc-----CCCccCcccccc----c-CcccccCcccccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYK----K-GICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~----~-g~c~mcgk~~~d~ 171 (179)
-.|.||...+.. =||.||..|..+ . ..|.+|.+.+...
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 489999775543 388899999854 2 3899999988753
No 80
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=51.03 E-value=3.3 Score=29.33 Aligned_cols=37 Identities=22% Similarity=0.662 Sum_probs=28.3
Q ss_pred cccchhhccccc-----CCCccCcccccc-----cCcccccCccccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~-----~g~c~mcgk~~~d 170 (179)
-.|.||...+.. =||.||..|..+ ...|.+|.+.+..
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 479999875543 389999999752 5689999998764
No 81
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=50.87 E-value=4.1 Score=36.14 Aligned_cols=39 Identities=26% Similarity=0.687 Sum_probs=30.4
Q ss_pred Ccccchhhccccc-----CCCccCccccc-----ccCcccccCcccccc
Q psy11903 133 FESCKICRQKVHQ-----VGSHYCQACAY-----KKGICAMCGKKLLDV 171 (179)
Q Consensus 133 ~~~c~~ck~~~~~-----~~~~yc~~cay-----~~g~c~mcgk~~~d~ 171 (179)
...|.||...... =||.+|..|.. ....|++|-..+...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3589999775433 38899999986 468999999988753
No 82
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7
Probab=50.85 E-value=21 Score=29.04 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=24.0
Q ss_pred EEEEEEEcCCCeEEEEecCCcEEEEEEee
Q psy11903 28 VRRFTLTNSQRMSVQVIDYGATITTIKVP 56 (179)
Q Consensus 28 v~~~tL~n~~gl~v~vlnyGAtI~sl~vp 56 (179)
...++|+++ ..+++|..+||.|++++..
T Consensus 21 ~~~~~l~~~-~~~a~i~~~Ga~l~s~~~~ 48 (270)
T 1jov_A 21 IPVLHLKHA-VGTAKISLQGAQLISWKPQ 48 (270)
T ss_dssp EEEEEEEET-TEEEEEETBTTEEEEEEET
T ss_pred ceEEEEeCC-CcEEEEECCCCEEEEEEEC
Confidence 567889985 6899999999999999864
No 83
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=49.33 E-value=4.2 Score=33.06 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=21.8
Q ss_pred cCcccchhhcccccCCCccCccc-------cccc-----CcccccCccccc
Q psy11903 132 KFESCKICRQKVHQVGSHYCQAC-------AYKK-----GICAMCGKKLLD 170 (179)
Q Consensus 132 ~~~~c~~ck~~~~~~~~~yc~~c-------ay~~-----g~c~mcgk~~~d 170 (179)
+.+.|+.|...+. .|=-+. +-+. |.|++||+....
T Consensus 103 l~s~CkeC~~~lr----~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~~ 149 (200)
T 3gox_A 103 TRPSCRECRKNID----GVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIV 149 (200)
T ss_dssp ECSSCHHHHHHHH----CSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEEB
T ss_pred cCccChhhhhccC----CcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCCc
Confidence 4678999987541 222111 1133 799999998773
No 84
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=48.52 E-value=5.4 Score=23.98 Aligned_cols=36 Identities=22% Similarity=0.577 Sum_probs=25.0
Q ss_pred cccchhhccccc---------CCCccCcccccc----cCcccccCcccc
Q psy11903 134 ESCKICRQKVHQ---------VGSHYCQACAYK----KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~~---------~~~~yc~~cay~----~g~c~mcgk~~~ 169 (179)
..|.||...+.. =||.||..|..+ ...|.+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467777765432 367889999753 368999987763
No 85
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=48.00 E-value=3.4 Score=29.21 Aligned_cols=37 Identities=30% Similarity=0.777 Sum_probs=28.2
Q ss_pred cccchhhcccccC------------CCccCccccc----ccCcccccCccccc
Q psy11903 134 ESCKICRQKVHQV------------GSHYCQACAY----KKGICAMCGKKLLD 170 (179)
Q Consensus 134 ~~c~~ck~~~~~~------------~~~yc~~cay----~~g~c~mcgk~~~d 170 (179)
..|.||...+..+ ||.||..|.. .+..|.+|.+.+..
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4788997655433 8999999984 45689999998863
No 86
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.71 E-value=9.2 Score=27.11 Aligned_cols=36 Identities=17% Similarity=0.474 Sum_probs=26.7
Q ss_pred cccchhhcccc------cCCCccCccccccc--CcccccCcccc
Q psy11903 134 ESCKICRQKVH------QVGSHYCQACAYKK--GICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~------~~~~~yc~~cay~~--g~c~mcgk~~~ 169 (179)
-.|.||...+. .=||.||..|...- ..|.+|.+.+.
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 36778765432 34889999998654 67999999874
No 87
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=45.68 E-value=4.1 Score=30.76 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=28.1
Q ss_pred cccchhhccccc-----CCCccCcccccc-----cCcccccCcccccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~-----~g~c~mcgk~~~d~ 171 (179)
-.|.||...+.. =||.||..|... ...|.+|...+...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 379999875543 388899999742 23799999988743
No 88
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.52 E-value=17 Score=23.16 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=6.2
Q ss_pred cccccCcccccc
Q psy11903 160 ICAMCGKKLLDV 171 (179)
Q Consensus 160 ~c~mcgk~~~d~ 171 (179)
.|+.|++.|.+.
T Consensus 37 ~C~~C~~~L~~~ 48 (72)
T 1x4l_A 37 NCKKCSLSLVGR 48 (72)
T ss_dssp BCSSSCCBCTTS
T ss_pred EeccCCCcCCCC
Confidence 455555555443
No 89
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=41.47 E-value=4.2 Score=31.54 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=9.2
Q ss_pred cccccCccccc
Q psy11903 160 ICAMCGKKLLD 170 (179)
Q Consensus 160 ~c~mcgk~~~d 170 (179)
+|+.|++.|.+
T Consensus 117 ~C~~C~~~I~~ 127 (192)
T 1b8t_A 117 GCPRCGQAVYA 127 (192)
T ss_dssp ECTTTSCEECS
T ss_pred cCCCCCCEecC
Confidence 59999999875
No 90
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=40.87 E-value=6.5 Score=28.67 Aligned_cols=31 Identities=16% Similarity=0.547 Sum_probs=24.5
Q ss_pred CCccCcccccc-----cCcccccCcccccccccccc
Q psy11903 147 GSHYCQACAYK-----KGICAMCGKKLLDVKNYKQS 177 (179)
Q Consensus 147 ~~~yc~~cay~-----~g~c~mcgk~~~d~~~~~~s 177 (179)
.|-+|..||.. ...|.||-.+|.++......
T Consensus 21 kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~ 56 (101)
T 3vk6_A 21 KHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRG 56 (101)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGG
T ss_pred cccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccC
Confidence 57899999954 36999999999988765543
No 91
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=40.86 E-value=5.5 Score=27.63 Aligned_cols=36 Identities=25% Similarity=0.647 Sum_probs=26.6
Q ss_pred cccchhhcccc------cCCCccCcccccc-----cCcccccCcccc
Q psy11903 134 ESCKICRQKVH------QVGSHYCQACAYK-----KGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~------~~~~~yc~~cay~-----~g~c~mcgk~~~ 169 (179)
-.|.||...+. .=||.||..|..+ +..|.+|...+.
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 47888876442 2378899999753 258999999874
No 92
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=39.73 E-value=8.3 Score=30.66 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=27.1
Q ss_pred Ccccchhhcccc-----cCCCccCcccccc----cC-cccccCcccc
Q psy11903 133 FESCKICRQKVH-----QVGSHYCQACAYK----KG-ICAMCGKKLL 169 (179)
Q Consensus 133 ~~~c~~ck~~~~-----~~~~~yc~~cay~----~g-~c~mcgk~~~ 169 (179)
.-.|.||..-.. .-||.||..|-.+ .+ .|++|+..+.
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 458999976443 3499999999641 23 3999999885
No 93
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.46 E-value=3.4 Score=26.40 Aligned_cols=38 Identities=24% Similarity=0.652 Sum_probs=28.5
Q ss_pred cccchhhccc----ccCCCccCccccc----ccCcccccCcccccc
Q psy11903 134 ESCKICRQKV----HQVGSHYCQACAY----KKGICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~----~~~~~~yc~~cay----~~g~c~mcgk~~~d~ 171 (179)
..|.||.... ..=||.||..|.. ....|.+|.+.+...
T Consensus 16 ~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4788887753 2347889999986 467899999888743
No 94
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=36.11 E-value=3.7 Score=26.35 Aligned_cols=39 Identities=26% Similarity=0.723 Sum_probs=27.2
Q ss_pred Ccccchhhcccc-------cCCCc-cCcccccccC----cccccCcccccc
Q psy11903 133 FESCKICRQKVH-------QVGSH-YCQACAYKKG----ICAMCGKKLLDV 171 (179)
Q Consensus 133 ~~~c~~ck~~~~-------~~~~~-yc~~cay~~g----~c~mcgk~~~d~ 171 (179)
...|.||-.... .=||. +|..|+-+-- .|.+|-.+|.++
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 357888866321 22444 7999986544 899999998754
No 95
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.61 E-value=24 Score=22.70 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=6.6
Q ss_pred cccchhhcccc
Q psy11903 134 ESCKICRQKVH 144 (179)
Q Consensus 134 ~~c~~ck~~~~ 144 (179)
.+|..|.+.|.
T Consensus 10 ~~C~~C~~~I~ 20 (76)
T 2cu8_A 10 SKCPKCDKTVY 20 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCCcCCCCEeE
Confidence 46666666655
No 96
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=34.90 E-value=26 Score=21.82 Aligned_cols=11 Identities=45% Similarity=1.059 Sum_probs=6.7
Q ss_pred cccccCccccc
Q psy11903 160 ICAMCGKKLLD 170 (179)
Q Consensus 160 ~c~mcgk~~~d 170 (179)
.|+.|++.+.+
T Consensus 33 ~C~~C~~~L~~ 43 (66)
T 1nyp_A 33 VCAKCEKPFLG 43 (66)
T ss_dssp BCTTTCCBCSS
T ss_pred EECCCCCCCCC
Confidence 46666666654
No 97
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=31.99 E-value=13 Score=24.00 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=23.8
Q ss_pred ccchhhccccc------CCCccCc-cccccc--CcccccCccc
Q psy11903 135 SCKICRQKVHQ------VGSHYCQ-ACAYKK--GICAMCGKKL 168 (179)
Q Consensus 135 ~c~~ck~~~~~------~~~~yc~-~cay~~--g~c~mcgk~~ 168 (179)
+|..|+..+.. +|.-||. .|-.+. -.|+.||..+
T Consensus 29 ~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 29 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp BCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 67777776643 3567898 587653 5899999654
No 98
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.55 E-value=19 Score=22.94 Aligned_cols=22 Identities=32% Similarity=0.791 Sum_probs=19.2
Q ss_pred ccchhhcccccCCCccCcccccc
Q psy11903 135 SCKICRQKVHQVGSHYCQACAYK 157 (179)
Q Consensus 135 ~c~~ck~~~~~~~~~yc~~cay~ 157 (179)
.|..|...++. |+.+|..|-|+
T Consensus 16 iCpkC~a~~~~-gaw~CrKCG~~ 37 (51)
T 3j21_g 16 VCLRCGATNPW-GAKKCRKCGYK 37 (51)
T ss_dssp ECTTTCCEECT-TCSSCSSSSSC
T ss_pred cCCCCCCcCCC-CceecCCCCCc
Confidence 89999999887 89999988776
No 99
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.08 E-value=29 Score=21.85 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=6.5
Q ss_pred cccccCcccccc
Q psy11903 160 ICAMCGKKLLDV 171 (179)
Q Consensus 160 ~c~mcgk~~~d~ 171 (179)
.|+.|++.|.+.
T Consensus 35 ~C~~C~~~L~~~ 46 (72)
T 1wyh_A 35 LCSGCEQPLGSR 46 (72)
T ss_dssp BCTTTCCBTTTS
T ss_pred eECCCCCcCCCC
Confidence 455566655543
No 100
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=30.37 E-value=20 Score=22.51 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=5.1
Q ss_pred cccccCccccc
Q psy11903 160 ICAMCGKKLLD 170 (179)
Q Consensus 160 ~c~mcgk~~~d 170 (179)
.|+.|++.|.+
T Consensus 34 ~C~~C~~~L~~ 44 (65)
T 2iyb_E 34 LCSCCSKCLIG 44 (65)
T ss_dssp BCTTTCCBCTT
T ss_pred ECCCCCCcCCC
Confidence 34455555443
No 101
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=29.97 E-value=11 Score=25.43 Aligned_cols=36 Identities=6% Similarity=-0.082 Sum_probs=26.1
Q ss_pred cccchhhccc-----ccCCCccCccccc----ccCcccccCcccc
Q psy11903 134 ESCKICRQKV-----HQVGSHYCQACAY----KKGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~-----~~~~~~yc~~cay----~~g~c~mcgk~~~ 169 (179)
-.|.||..-. ...|+.||..|-- ..+.|.+||..+.
T Consensus 15 ~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 15 FRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred eECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 3788887533 2248999999942 3579999999875
No 102
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.86 E-value=11 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.605 Sum_probs=23.2
Q ss_pred ccchhhcccccCCCccCcccccccCcccccCcc
Q psy11903 135 SCKICRQKVHQVGSHYCQACAYKKGICAMCGKK 167 (179)
Q Consensus 135 ~c~~ck~~~~~~~~~yc~~cay~~g~c~mcgk~ 167 (179)
.|..|.+.+.+ .+ +|+.|--.-..|.-||..
T Consensus 20 ~C~~C~~~~~~-~a-fCPeCgq~Le~lkACGA~ 50 (81)
T 2jrp_A 20 HCETCAKDFSL-QA-LCPDCRQPLQVLKACGAV 50 (81)
T ss_dssp ECTTTCCEEEE-EE-ECSSSCSCCCEEEETTEE
T ss_pred ECccccccCCC-cc-cCcchhhHHHHHHhcCCc
Confidence 58888888777 34 888888877778777743
No 103
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.57 E-value=52 Score=21.59 Aligned_cols=9 Identities=22% Similarity=0.922 Sum_probs=4.7
Q ss_pred ccchhhccc
Q psy11903 135 SCKICRQKV 143 (179)
Q Consensus 135 ~c~~ck~~~ 143 (179)
+|..|++.+
T Consensus 44 ~C~~C~~~L 52 (82)
T 2co8_A 44 RCHTCEATL 52 (82)
T ss_dssp BCSSSCCBC
T ss_pred EEcCCCCCc
Confidence 555555544
No 104
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=29.55 E-value=22 Score=28.97 Aligned_cols=35 Identities=29% Similarity=0.742 Sum_probs=26.6
Q ss_pred cCcccchhhcccccCCCccCcccc--------cc------cCcccccCccc
Q psy11903 132 KFESCKICRQKVHQVGSHYCQACA--------YK------KGICAMCGKKL 168 (179)
Q Consensus 132 ~~~~c~~ck~~~~~~~~~yc~~ca--------y~------~g~c~mcgk~~ 168 (179)
....|.+|+.-|.+ | .-|+.|- ++ ...|+.|+...
T Consensus 179 ~i~~C~iC~~iv~~-g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQ-G-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSS-C-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhC-C-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 36789999999998 4 8888753 22 34899998864
No 105
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.55 E-value=25 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=13.4
Q ss_pred ccchhhccccc------CCCccCcccccc
Q psy11903 135 SCKICRQKVHQ------VGSHYCQACAYK 157 (179)
Q Consensus 135 ~c~~ck~~~~~------~~~~yc~~cay~ 157 (179)
+|..|+..+.. ++.-||..|..+
T Consensus 37 ~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 65 (76)
T 1x68_A 37 NCGKCSVSLVGKGFLTQNKEIFCQKCGSG 65 (76)
T ss_dssp BCTTTCCBCSSSCEEEETTEEEETTTTCC
T ss_pred ChhhCCCcCCCCceEeECCEEECHHHhhh
Confidence 67777766532 244566666544
No 106
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=29.21 E-value=11 Score=25.60 Aligned_cols=37 Identities=22% Similarity=0.527 Sum_probs=27.3
Q ss_pred Ccccchhhccccc--------CCCccCccccc----ccCcccccCcccc
Q psy11903 133 FESCKICRQKVHQ--------VGSHYCQACAY----KKGICAMCGKKLL 169 (179)
Q Consensus 133 ~~~c~~ck~~~~~--------~~~~yc~~cay----~~g~c~mcgk~~~ 169 (179)
...|.||-..+.. =||.||..|.. ....|.+|-+.+.
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4579999765433 36788888975 4679999988764
No 107
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.04 E-value=26 Score=22.16 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=7.3
Q ss_pred cccccCcccccc
Q psy11903 160 ICAMCGKKLLDV 171 (179)
Q Consensus 160 ~c~mcgk~~~d~ 171 (179)
.|+.|++.|.+.
T Consensus 35 ~C~~C~~~L~~~ 46 (72)
T 1x4k_A 35 ICHRCQQPIGTK 46 (72)
T ss_dssp CCSSSCCCCCSS
T ss_pred cccccCCccCCC
Confidence 466666666554
No 108
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.71 E-value=40 Score=21.26 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=5.9
Q ss_pred cccccCccccc
Q psy11903 160 ICAMCGKKLLD 170 (179)
Q Consensus 160 ~c~mcgk~~~d 170 (179)
.|+.|++.|.+
T Consensus 35 ~C~~C~~~L~~ 45 (72)
T 1x61_A 35 VCSTCRAQLRG 45 (72)
T ss_dssp BCSSSCCBCTT
T ss_pred cccccCCcCCc
Confidence 45556655543
No 109
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=27.89 E-value=16 Score=30.44 Aligned_cols=31 Identities=29% Similarity=0.792 Sum_probs=22.7
Q ss_pred cccCCCcccCcccchhhccccc-----CCCccCccc
Q psy11903 124 ARFNPYTQKFESCKICRQKVHQ-----VGSHYCQAC 154 (179)
Q Consensus 124 ~~~~p~~~~~~~c~~ck~~~~~-----~~~~yc~~c 154 (179)
..+.-|+.....|..|.+.|.. -..+||..|
T Consensus 236 ~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~C 271 (273)
T 3u6p_A 236 HHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRC 271 (273)
T ss_dssp -CCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred ceEEEeCCCcCCCCCCCCeEEEEEECCCCeEECCCC
Confidence 4567787777899999887642 346889888
No 110
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=27.30 E-value=18 Score=29.97 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=23.9
Q ss_pred cccCCCcccCcccchhhcccc-----cCCCccCcccc
Q psy11903 124 ARFNPYTQKFESCKICRQKVH-----QVGSHYCQACA 155 (179)
Q Consensus 124 ~~~~p~~~~~~~c~~ck~~~~-----~~~~~yc~~ca 155 (179)
..+.-|+.....|..|.+.|. +-..+||..|-
T Consensus 226 ~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 226 TRHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred ceEEEcccCCCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 566788877789999988664 33567898884
No 111
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.85 E-value=20 Score=23.77 Aligned_cols=24 Identities=13% Similarity=0.589 Sum_probs=18.0
Q ss_pred CCCccCccccc----ccCcccccCcccc
Q psy11903 146 VGSHYCQACAY----KKGICAMCGKKLL 169 (179)
Q Consensus 146 ~~~~yc~~cay----~~g~c~mcgk~~~ 169 (179)
=+|.|+..|.. .+..|.+|-+.+.
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 36778888864 4578999988764
No 112
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.53 E-value=24 Score=26.46 Aligned_cols=36 Identities=22% Similarity=0.719 Sum_probs=26.9
Q ss_pred Ccccchhhcccc--cCCCccCcccccccCcccccCccccc
Q psy11903 133 FESCKICRQKVH--QVGSHYCQACAYKKGICAMCGKKLLD 170 (179)
Q Consensus 133 ~~~c~~ck~~~~--~~~~~yc~~cay~~g~c~mcgk~~~d 170 (179)
...|.+|.+... -+-++-|..|-+. +|+-||..+.+
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~--VC~~C~~~~~~ 92 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKN--VCTKCGVETSN 92 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCE--EETTSEEECCC
T ss_pred CccccccCCCcccccCCCCCCCCCCcc--cccccCCccCC
Confidence 468999998772 2235889988665 99999988754
No 113
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=25.48 E-value=17 Score=25.50 Aligned_cols=36 Identities=6% Similarity=-0.070 Sum_probs=26.2
Q ss_pred cccchhhccc-----ccCCCccCccccc----ccCcccccCcccc
Q psy11903 134 ESCKICRQKV-----HQVGSHYCQACAY----KKGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~-----~~~~~~yc~~cay----~~g~c~mcgk~~~ 169 (179)
-.|.||..-. ...|+.||..|-- ..+.|.+||..+.
T Consensus 30 ~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 30 FRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp TBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred hCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 3788887532 2248999999942 3578999999875
No 114
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.15 E-value=55 Score=20.77 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=8.1
Q ss_pred cccccCccccccc
Q psy11903 160 ICAMCGKKLLDVK 172 (179)
Q Consensus 160 ~c~mcgk~~~d~~ 172 (179)
.|+.|++.+.+..
T Consensus 41 ~C~~C~~~L~~~~ 53 (77)
T 1g47_A 41 VCAQCFQQFPEGL 53 (77)
T ss_dssp CCTTTCCCCGGGC
T ss_pred eECCCCCCCCCCC
Confidence 4666777666543
No 115
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.68 E-value=39 Score=21.93 Aligned_cols=36 Identities=25% Similarity=0.612 Sum_probs=17.8
Q ss_pred CcccchhhcccccC-----CCccCcccccccCcccccCccccccc
Q psy11903 133 FESCKICRQKVHQV-----GSHYCQACAYKKGICAMCGKKLLDVK 172 (179)
Q Consensus 133 ~~~c~~ck~~~~~~-----~~~yc~~cay~~g~c~mcgk~~~d~~ 172 (179)
..+|..|.+.|... +..|=..|- .|+.|++.|.+..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF----~C~~C~~~L~~~~ 55 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY----VCTDCGTNLKQKG 55 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT----SCSSSCCCHHHHC
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC----eeCCCCCCCCCCC
Confidence 34677777666421 111212221 4667777765443
No 116
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.38 E-value=43 Score=23.02 Aligned_cols=52 Identities=17% Similarity=0.452 Sum_probs=32.6
Q ss_pred cceeeeec-ccccCC---CcccCcccchhhcccccC--CCccCcccccccCcccccCccccc
Q psy11903 115 ENKALTAS-KARFNP---YTQKFESCKICRQKVHQV--GSHYCQACAYKKGICAMCGKKLLD 170 (179)
Q Consensus 115 ~nk~l~~~-k~~~~p---~~~~~~~c~~ck~~~~~~--~~~yc~~cay~~g~c~mcgk~~~d 170 (179)
.|.||.-+ |.+.++ |+ .+.|..|.+.+--. -.-.|+.|.. .+|.-|+.-..+
T Consensus 5 ~~eL~elrrkgak~~s~~~~--~r~CarC~~~LG~l~~~g~~C~~Ck~--rVC~~Crv~~~~ 62 (76)
T 2csz_A 5 SSGLLEIKRKGAKRGSQHYS--DRTCARCQESLGRLSPKTNTCRGCNH--LVCRDCRIQESN 62 (76)
T ss_dssp CCCCCCCCCCCSCSCCTTCC--CCBCSSSCCBCSSSCTTTSEETTTTE--ECCTTSEEECST
T ss_pred HHHHHHHHHccccCcCcCCC--ccchhhhCccccccccCCCcCcccCh--hhcccccccCCC
Confidence 55666542 333443 43 47899999987432 3467888854 488888866544
No 117
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=24.05 E-value=20 Score=29.47 Aligned_cols=31 Identities=23% Similarity=0.596 Sum_probs=22.1
Q ss_pred cccCCCcccCcccchhhcccc-----cCCCccCccc
Q psy11903 124 ARFNPYTQKFESCKICRQKVH-----QVGSHYCQAC 154 (179)
Q Consensus 124 ~~~~p~~~~~~~c~~ck~~~~-----~~~~~yc~~c 154 (179)
..+.-|+.....|..|.+.|. +-..+||..|
T Consensus 225 ~~l~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~C 260 (262)
T 1k3x_A 225 FRFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 260 (262)
T ss_dssp CCCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred eeEEEcCCCcCCCCCCCCEeEEEEECCCCeEECCCC
Confidence 345678776778999987664 3356788888
No 118
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=23.33 E-value=17 Score=25.39 Aligned_cols=36 Identities=6% Similarity=-0.177 Sum_probs=26.4
Q ss_pred cccchhhccc-----ccCC-CccCccccc----ccCcccccCcccc
Q psy11903 134 ESCKICRQKV-----HQVG-SHYCQACAY----KKGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~-----~~~~-~~yc~~cay----~~g~c~mcgk~~~ 169 (179)
-.|.||..-. ...| +.||..|-. ..+.|.+|+..+.
T Consensus 23 ~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 23 FLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 3788887633 2347 899999952 2578999999875
No 119
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.01 E-value=40 Score=20.97 Aligned_cols=35 Identities=23% Similarity=0.643 Sum_probs=20.2
Q ss_pred cccchhhcccccC-------CCccCcccccccCcccccCccccccc
Q psy11903 134 ESCKICRQKVHQV-------GSHYCQACAYKKGICAMCGKKLLDVK 172 (179)
Q Consensus 134 ~~c~~ck~~~~~~-------~~~yc~~cay~~g~c~mcgk~~~d~~ 172 (179)
.+|..|.+.|... +..|=..|- .|+.|++.+.+..
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF----~C~~C~~~L~~~~ 53 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCF----VCAQCFQQFPEGL 53 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTS----SCTTTCCCCGGGC
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCC----cccCCCCCCCCCC
Confidence 4788887776632 112222222 5788888877653
No 120
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.96 E-value=51 Score=20.63 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=5.6
Q ss_pred cccccCcccccc
Q psy11903 160 ICAMCGKKLLDV 171 (179)
Q Consensus 160 ~c~mcgk~~~d~ 171 (179)
.|+.|++.|.+.
T Consensus 33 ~C~~C~~~L~~~ 44 (70)
T 2d8x_A 33 RCDLCQEVLADI 44 (70)
T ss_dssp BCSSSCCBCSSS
T ss_pred EeCCCCCcCCCC
Confidence 344455544443
No 121
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=22.74 E-value=22 Score=22.03 Aligned_cols=10 Identities=50% Similarity=1.222 Sum_probs=8.1
Q ss_pred cccccCcccc
Q psy11903 160 ICAMCGKKLL 169 (179)
Q Consensus 160 ~c~mcgk~~~ 169 (179)
+|--|||+|+
T Consensus 19 vC~~CgkPi~ 28 (44)
T 2lo3_A 19 VCEKCGKPLA 28 (44)
T ss_dssp ECTTTCCEEE
T ss_pred hhcccCCcch
Confidence 7888888876
No 122
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.67 E-value=51 Score=20.57 Aligned_cols=9 Identities=33% Similarity=1.139 Sum_probs=4.3
Q ss_pred ccchhhccc
Q psy11903 135 SCKICRQKV 143 (179)
Q Consensus 135 ~c~~ck~~~ 143 (179)
+|..|++.+
T Consensus 33 ~C~~C~~~L 41 (70)
T 2d8z_A 33 VCTACRKQL 41 (70)
T ss_dssp BCSSSCCBC
T ss_pred ccCCCCCcC
Confidence 445555444
No 123
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.61 E-value=61 Score=21.47 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=18.8
Q ss_pred cccchhhccccc-----CCCccCcccccccCcccccCcccccccc
Q psy11903 134 ESCKICRQKVHQ-----VGSHYCQACAYKKGICAMCGKKLLDVKN 173 (179)
Q Consensus 134 ~~c~~ck~~~~~-----~~~~yc~~cay~~g~c~mcgk~~~d~~~ 173 (179)
.+|..|++.|.. .+..|=..|- .|+.|++.|.+...
T Consensus 26 ~~C~~C~~~I~~~~~~a~~~~~H~~CF----~C~~C~~~L~~~~~ 66 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVKARDKYRHPECF----VCADCNLNLKQKGY 66 (89)
T ss_dssp CBCTTTCCBCCSCCEESSSCEECTTTC----CCSSSCCCTTTSCC
T ss_pred CCcccCCCEecccEEEECCceECccCC----EecCCCCCCCCCCe
Confidence 467777776652 1112222221 57777777765443
No 124
>1rji_A BMKX, potassium channel toxin KX; 3-10 helix, beta sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1wt8_A
Probab=22.50 E-value=37 Score=19.22 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=12.5
Q ss_pred cccccCccccccccccc
Q psy11903 160 ICAMCGKKLLDVKNYKQ 176 (179)
Q Consensus 160 ~c~mcgk~~~d~~~~~~ 176 (179)
-|-|||--|.--..|-|
T Consensus 12 ~cvmcglgi~ck~~y~q 28 (31)
T 1rji_A 12 DCVMCGLGISCKNGYCQ 28 (31)
T ss_dssp GGTTTCSSCCBCSSBBS
T ss_pred cEEEeccceEEcceeec
Confidence 58899988876666655
No 125
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=22.50 E-value=28 Score=24.09 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=26.2
Q ss_pred cccchhhcccc-----------------------cCCCccCccccc---------ccCcccccCcccc
Q psy11903 134 ESCKICRQKVH-----------------------QVGSHYCQACAY---------KKGICAMCGKKLL 169 (179)
Q Consensus 134 ~~c~~ck~~~~-----------------------~~~~~yc~~cay---------~~g~c~mcgk~~~ 169 (179)
..|.||...+. .=+|.||..|.. ....|.+|-..+.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 47999977752 236789999953 2568999987664
No 126
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=22.04 E-value=20 Score=25.50 Aligned_cols=22 Identities=9% Similarity=0.472 Sum_probs=16.5
Q ss_pred CCccCcccccc----cCcccccCccc
Q psy11903 147 GSHYCQACAYK----KGICAMCGKKL 168 (179)
Q Consensus 147 ~~~yc~~cay~----~g~c~mcgk~~ 168 (179)
+|.|+..|..+ +..|.||-...
T Consensus 74 ~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 74 NHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 56677777755 78899998763
No 127
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=21.88 E-value=32 Score=19.09 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=9.4
Q ss_pred CcccccCccccc
Q psy11903 159 GICAMCGKKLLD 170 (179)
Q Consensus 159 g~c~mcgk~~~d 170 (179)
..|+.|||.+-.
T Consensus 4 ~~C~~C~k~Vy~ 15 (31)
T 1zfo_A 4 PNCARCGKIVYP 15 (31)
T ss_dssp CBCSSSCSBCCG
T ss_pred CcCCccCCEEec
Confidence 479999998854
No 128
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.59 E-value=49 Score=20.65 Aligned_cols=10 Identities=50% Similarity=1.172 Sum_probs=4.8
Q ss_pred cccccCcccc
Q psy11903 160 ICAMCGKKLL 169 (179)
Q Consensus 160 ~c~mcgk~~~ 169 (179)
.|+.|++.|.
T Consensus 33 ~C~~C~~~L~ 42 (69)
T 2cur_A 33 VCVTCSKKLA 42 (69)
T ss_dssp BCTTTCCBCT
T ss_pred EECCCCCCCC
Confidence 3445555544
No 129
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=20.72 E-value=25 Score=26.30 Aligned_cols=38 Identities=29% Similarity=0.674 Sum_probs=28.0
Q ss_pred cccchhhcccc-----cCCCccCcccccc-----cCcccccCcccccc
Q psy11903 134 ESCKICRQKVH-----QVGSHYCQACAYK-----KGICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~-----~~~~~yc~~cay~-----~g~c~mcgk~~~d~ 171 (179)
-.|.||...+. .-|+.||..|..+ ...|.+|...+...
T Consensus 19 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 37888876543 3488899999854 24999999887653
No 130
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=20.65 E-value=25 Score=25.36 Aligned_cols=11 Identities=45% Similarity=1.238 Sum_probs=9.3
Q ss_pred CcccccCcccc
Q psy11903 159 GICAMCGKKLL 169 (179)
Q Consensus 159 g~c~mcgk~~~ 169 (179)
|+|..||..|-
T Consensus 82 g~C~~Cg~~I~ 92 (112)
T 2kq9_A 82 GTCVKCGKRIS 92 (112)
T ss_dssp SEETTTTEECC
T ss_pred CeeCCCCCccc
Confidence 68999999884
No 131
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.54 E-value=31 Score=28.54 Aligned_cols=32 Identities=25% Similarity=0.747 Sum_probs=23.6
Q ss_pred cccCCCcccCcccchhhcccc-----cCCCccCcccc
Q psy11903 124 ARFNPYTQKFESCKICRQKVH-----QVGSHYCQACA 155 (179)
Q Consensus 124 ~~~~p~~~~~~~c~~ck~~~~-----~~~~~yc~~ca 155 (179)
.++.-|+.....|..|.+.|. +-..+||..|-
T Consensus 233 ~~~~VygR~G~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 233 NELQVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred ceEEEccCCCCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 466788877789999988764 33567888884
No 132
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=20.41 E-value=9 Score=24.52 Aligned_cols=38 Identities=29% Similarity=0.701 Sum_probs=24.9
Q ss_pred cccchhhcccc-------cCCCc-cCccccccc----CcccccCcccccc
Q psy11903 134 ESCKICRQKVH-------QVGSH-YCQACAYKK----GICAMCGKKLLDV 171 (179)
Q Consensus 134 ~~c~~ck~~~~-------~~~~~-yc~~cay~~----g~c~mcgk~~~d~ 171 (179)
..|.||-.... .=||. +|..|+-+- ..|.+|-.+|.++
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 46888855322 22444 588998543 3599999998754
No 133
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.44 E-value=22 Score=16.96 Aligned_cols=11 Identities=36% Similarity=1.259 Sum_probs=6.4
Q ss_pred cccccCccccc
Q psy11903 160 ICAMCGKKLLD 170 (179)
Q Consensus 160 ~c~mcgk~~~d 170 (179)
.|..|||....
T Consensus 4 ~C~~C~k~f~~ 14 (26)
T 2lvu_A 4 VCERCGKRFVQ 14 (26)
Confidence 46666665543
Done!