RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11903
         (179 letters)



>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 344

 Score = 69.5 bits (169), Expect = 4e-15
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 9  IMEDKFGECINESNGQVLPVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLG 68
          +    FGE    S G    V +F L +   + V +I +G TIT ++V D++G   DVVLG
Sbjct: 6  VTRAVFGE--LPSGGG--TVEKFQLQSD-LLRVDIISWGCTITALEVKDRQGRASDVVLG 60

Query: 69 FDDMRE 74
          F ++  
Sbjct: 61 FAELEG 66


>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode
          (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 329

 Score = 66.8 bits (162), Expect = 3e-14
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 31 FTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMRE 74
            + N Q ++  ++ +GAT+  +  PDK G   D+VLGFD + E
Sbjct: 5  IEIANKQGLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDE 48


>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 342

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 10 MEDKFGECINESNGQVLPVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGF 69
          +E +F     E        R  T+    R      + GA+I  +KV  +      VVLG+
Sbjct: 3  VEARFSA---EDMRYD--ARFVTIGAGTRFQATFANLGASIVDLKVNGQ-----SVVLGY 52

Query: 70 DDMRE 74
          ++   
Sbjct: 53 ENEEG 57


>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis
          [TaxId: 1358]}
          Length = 340

 Score = 57.5 bits (138), Expect = 7e-11
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 20 ESNGQVLPVRRFTLTNSQRMSVQVIDYGATITTIKVPDKRGNVDDVVLGFDDMRE 74
             G        +LTN   +++   + GA I   +   K      ++LGFD  +E
Sbjct: 5  RDFGL--GSDLISLTNKAGVTISFTNLGARIVDWQKDGK-----HLILGFDSAKE 52


>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
           {Escherichia coli [TaxId: 562]}
          Length = 144

 Score = 30.2 bits (68), Expect = 0.066
 Identities = 7/50 (14%), Positives = 17/50 (34%)

Query: 116 NKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCG 165
             A+ A+     PY++      +  +        Y +  A+   +  + G
Sbjct: 43  QAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQG 92


>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli
           [TaxId: 562]}
          Length = 40

 Score = 24.6 bits (54), Expect = 1.2
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 5/35 (14%)

Query: 125 RFNPYTQKFESCKIC-----RQKVHQVGSHYCQAC 154
           RF  + +  E C+ C     +  +     ++C  C
Sbjct: 4   RFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 38


>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg)
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 46

 Score = 23.9 bits (52), Expect = 3.1
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)

Query: 125 RFNPYTQKFESCKICRQKVHQV-----GSHYCQAC 154
               Y ++   CK C   + +      G+HYC  C
Sbjct: 10  HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRC 44


>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus
           thermophilus [TaxId: 274]}
          Length = 56

 Score = 23.2 bits (50), Expect = 5.3
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)

Query: 125 RFNPYTQKFESCKICRQKVHQV-----GSHYCQAC 154
           R   Y ++   C  C + V +      G+H+C  C
Sbjct: 17  RHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTC 51


>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg)
           {Lactococcus lactis [TaxId: 1358]}
          Length = 47

 Score = 23.1 bits (50), Expect = 6.6
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 5/35 (14%)

Query: 125 RFNPYTQKFESCKICRQKVHQV-----GSHYCQAC 154
               Y +  E C  C  ++ ++     G+H+C  C
Sbjct: 10  ELQVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPVC 44


>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg)
           {Escherichia coli [TaxId: 562]}
          Length = 44

 Score = 22.7 bits (49), Expect = 6.8
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 5/35 (14%)

Query: 125 RFNPYTQKFESCKICRQKVHQV-----GSHYCQAC 154
               Y +K E C++C   +         + YC+ C
Sbjct: 8   ELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQC 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 705,716
Number of extensions: 33049
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 27
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)