Query psy11904
Match_columns 199
No_of_seqs 109 out of 127
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 21:56:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cbz_A Dishevelled-2; PDZ doma 96.9 0.00063 2.1E-08 49.2 3.4 49 2-50 44-95 (108)
2 3e17_A Tight junction protein 96.6 0.0017 5.8E-08 45.3 3.7 49 2-51 32-81 (88)
3 1ufx_A KIAA1526 protein; PDZ d 96.6 0.0012 4E-08 47.8 2.9 48 2-49 43-95 (103)
4 2q9v_A Membrane-associated gua 96.5 0.0018 6.2E-08 44.4 3.1 49 2-50 38-88 (90)
5 2d92_A INAD-like protein; PDZ 96.4 0.0028 9.6E-08 45.5 4.0 48 2-51 55-105 (108)
6 2db5_A INAD-like protein; PDZ 96.4 0.0033 1.1E-07 46.3 4.2 46 2-50 65-114 (128)
7 1ujd_A KIAA0559 protein; PDZ d 96.3 0.0028 9.6E-08 46.2 3.6 48 2-50 60-108 (117)
8 1wi4_A Synip, syntaxin binding 96.3 0.0019 6.4E-08 47.0 2.6 49 2-50 52-104 (109)
9 2fe5_A Presynaptic protein SAP 96.3 0.0039 1.3E-07 42.9 4.1 48 2-50 44-92 (94)
10 4amh_A Disks large homolog 1; 96.3 0.004 1.4E-07 44.8 4.0 48 2-50 43-91 (106)
11 1uep_A Membrane associated gua 96.2 0.0045 1.5E-07 44.0 4.2 50 2-51 45-96 (103)
12 1wha_A KIAA0147 protein, scrib 96.2 0.0036 1.2E-07 44.5 3.5 48 2-50 49-97 (105)
13 3b76_A E3 ubiquitin-protein li 96.2 0.0042 1.5E-07 46.2 4.0 48 2-50 64-112 (118)
14 1kwa_A Hcask/LIN-2 protein; PD 96.2 0.0037 1.3E-07 43.6 3.5 46 2-50 36-84 (88)
15 1wg6_A Hypothetical protein (r 96.2 0.0034 1.2E-07 46.8 3.4 50 2-51 66-122 (127)
16 1i16_A Interleukin 16, LCF; cy 96.2 0.0054 1.9E-07 45.7 4.5 49 2-50 68-117 (130)
17 1d5g_A Human phosphatase HPTP1 96.2 0.0053 1.8E-07 42.6 4.1 48 2-50 44-92 (96)
18 2opg_A Multiple PDZ domain pro 96.1 0.0055 1.9E-07 42.6 4.1 48 2-50 41-89 (98)
19 2awx_A Synapse associated prot 96.1 0.0051 1.7E-07 43.7 4.0 49 2-51 44-93 (105)
20 3sfj_A TAX1-binding protein 3; 96.1 0.0054 1.9E-07 43.1 4.1 48 2-50 56-104 (104)
21 2byg_A Channel associated prot 96.1 0.0054 1.8E-07 45.1 4.2 48 2-50 65-113 (117)
22 3o46_A Maguk P55 subfamily mem 96.1 0.0047 1.6E-07 42.9 3.5 49 2-51 39-88 (93)
23 1n7e_A AMPA receptor interacti 96.1 0.0052 1.8E-07 42.9 3.7 46 2-50 41-89 (97)
24 2rcz_A Tight junction protein 96.1 0.0056 1.9E-07 40.5 3.6 46 2-50 32-80 (81)
25 2i1n_A Discs, large homolog 3; 96.1 0.0064 2.2E-07 42.7 4.1 48 2-50 45-93 (102)
26 3axa_A Afadin, nectin-3, prote 96.0 0.0059 2E-07 43.3 4.0 48 2-50 49-97 (106)
27 1wfg_A Regulating synaptic mem 96.0 0.0067 2.3E-07 45.5 4.3 49 2-50 76-126 (131)
28 2jil_A GRIP1 protein, glutamat 96.0 0.0056 1.9E-07 42.5 3.6 48 2-50 43-91 (97)
29 2iwn_A Multiple PDZ domain pro 96.0 0.0078 2.7E-07 41.2 4.2 48 2-50 44-92 (97)
30 2dm8_A INAD-like protein; PDZ 95.9 0.0069 2.4E-07 43.4 4.0 48 2-50 54-102 (116)
31 2iwq_A Multiple PDZ domain pro 95.9 0.0062 2.1E-07 45.3 3.7 48 2-50 70-118 (123)
32 2eno_A Synaptojanin-2-binding 95.9 0.0073 2.5E-07 43.9 4.0 49 2-51 58-107 (120)
33 2fcf_A Multiple PDZ domain pro 95.9 0.0074 2.5E-07 42.3 3.8 48 2-50 50-98 (103)
34 3nfk_A Tyrosine-protein phosph 95.8 0.0086 2.9E-07 42.4 4.1 48 2-49 54-106 (107)
35 1wf8_A Neurabin-I; PDZ domain, 95.8 0.0087 3E-07 42.6 4.1 48 2-50 51-99 (107)
36 2yt7_A Amyloid beta A4 precurs 95.8 0.012 4.2E-07 41.6 4.8 46 2-49 48-97 (101)
37 2i04_A Membrane-associated gua 95.8 0.0083 2.8E-07 40.7 3.7 46 2-49 36-85 (85)
38 2jik_A Synaptojanin-2 binding 95.8 0.01 3.5E-07 41.6 4.2 48 2-50 48-96 (101)
39 3cyy_A Tight junction protein 95.7 0.0092 3.2E-07 40.8 3.8 48 2-50 34-82 (92)
40 2ehr_A INAD-like protein; PDZ 95.7 0.0084 2.9E-07 43.3 3.7 48 2-50 61-109 (117)
41 2qg1_A Multiple PDZ domain pro 95.7 0.0094 3.2E-07 41.0 3.8 48 2-50 40-88 (92)
42 2dmz_A INAD-like protein; PDZ 95.7 0.0065 2.2E-07 44.6 3.1 48 2-50 57-105 (129)
43 2o2t_A Multiple PDZ domain pro 95.7 0.0092 3.1E-07 43.0 3.8 48 2-50 60-109 (117)
44 2djt_A Unnamed protein product 95.7 0.0086 2.9E-07 42.2 3.6 48 2-50 49-97 (104)
45 2kpk_A Membrane-associated gua 95.7 0.0099 3.4E-07 44.1 4.1 47 2-50 54-104 (129)
46 1q7x_A PDZ2B domain of PTP-BAS 95.7 0.0098 3.3E-07 42.3 3.8 48 2-50 53-101 (108)
47 2vsp_A PDZ domain-containing p 95.6 0.0098 3.3E-07 41.1 3.6 45 2-50 38-85 (91)
48 1ueq_A Membrane associated gua 95.6 0.011 3.6E-07 43.5 4.0 47 2-50 55-105 (123)
49 2ejy_A 55 kDa erythrocyte memb 95.6 0.0097 3.3E-07 43.2 3.6 45 2-49 47-94 (97)
50 1v5q_A GRIP1 homolog, glutamat 95.6 0.01 3.4E-07 43.6 3.7 50 2-51 56-107 (122)
51 1wfv_A Membrane associated gua 95.6 0.0073 2.5E-07 42.2 2.8 48 2-50 47-95 (103)
52 2vwr_A Ligand of NUMB protein 95.6 0.013 4.5E-07 40.6 4.1 46 2-50 40-88 (95)
53 2dc2_A GOPC, golgi associated 95.6 0.01 3.6E-07 42.3 3.6 49 2-51 46-95 (103)
54 2fne_A Multiple PDZ domain pro 95.6 0.01 3.4E-07 43.8 3.6 48 2-50 64-112 (117)
55 2uzc_A Human pdlim5, PDZ and L 95.5 0.014 4.7E-07 39.8 4.0 47 2-50 38-85 (88)
56 1um1_A KIAA1849 protein, RSGI 95.5 0.013 4.6E-07 41.7 4.1 46 2-50 47-95 (110)
57 3hpk_A Protein interacting wit 95.5 0.012 4.2E-07 43.0 4.0 48 2-50 56-104 (125)
58 2pa1_A PDZ and LIM domain prot 95.5 0.012 4.1E-07 40.2 3.6 47 2-50 37-84 (87)
59 1r6j_A Syntenin 1; PDZ, membra 95.5 0.01 3.4E-07 42.5 3.2 45 2-48 34-79 (82)
60 1ihj_A INAD; intermolecular di 95.5 0.013 4.3E-07 40.8 3.6 48 2-50 48-96 (98)
61 2dlu_A INAD-like protein; PDZ 95.4 0.014 4.7E-07 41.7 3.9 46 2-50 49-97 (111)
62 1x6d_A Interleukin-16; PDZ dom 95.4 0.0091 3.1E-07 43.3 2.9 49 2-50 53-102 (119)
63 1uju_A Scribble; PDZ domain, c 95.4 0.0048 1.6E-07 44.2 1.3 46 2-50 55-103 (111)
64 2jre_A C60-1 PDZ domain peptid 95.4 0.0098 3.3E-07 42.1 2.9 48 2-50 55-103 (108)
65 2iwo_A Multiple PDZ domain pro 95.3 0.015 5.1E-07 43.0 3.9 48 2-50 64-112 (120)
66 2dkr_A LIN-7 homolog B; LIN-7B 95.3 0.013 4.5E-07 40.2 3.3 46 2-50 41-89 (93)
67 1v62_A KIAA1719 protein; struc 95.3 0.014 4.7E-07 42.7 3.4 46 2-50 53-101 (117)
68 4e34_A Golgi-associated PDZ an 95.3 0.017 5.7E-07 39.3 3.7 46 2-48 39-85 (87)
69 2qkv_A Inactivation-NO-after-p 95.2 0.016 5.6E-07 40.7 3.7 46 2-50 42-90 (96)
70 2q3g_A PDZ and LIM domain prot 95.2 0.019 6.6E-07 39.3 4.0 45 2-50 38-85 (89)
71 1uhp_A Hypothetical protein KI 95.2 0.02 6.9E-07 40.7 4.0 48 2-50 52-100 (107)
72 2g5m_B Neurabin-2; spinophilin 95.2 0.013 4.4E-07 42.0 3.0 46 2-50 46-94 (113)
73 2kv8_A RGS12, regulator of G-p 95.2 0.022 7.7E-07 38.5 4.1 47 2-50 34-81 (83)
74 2koj_A Partitioning defective 95.1 0.021 7.3E-07 40.6 4.1 47 2-50 50-100 (111)
75 2ego_A General receptor for ph 95.1 0.017 5.8E-07 40.3 3.5 44 2-49 48-94 (96)
76 1wif_A RSGI RUH-020, riken cDN 95.1 0.028 9.7E-07 42.9 4.9 47 2-50 60-110 (126)
77 2la8_A Inactivation-NO-after-p 95.1 0.024 8.2E-07 41.1 4.3 46 2-50 36-84 (106)
78 2daz_A INAD-like protein; PDZ 95.1 0.02 6.9E-07 41.9 3.9 46 2-50 62-110 (124)
79 1qav_A Alpha-1 syntrophin (res 95.0 0.022 7.6E-07 39.0 3.8 47 2-49 41-88 (90)
80 2f5y_A Regulator of G-protein 95.0 0.021 7.3E-07 39.4 3.8 46 2-51 35-83 (91)
81 2v90_A PDZ domain-containing p 95.0 0.018 6E-07 40.0 3.3 45 2-50 41-88 (96)
82 2he4_A Na(+)/H(+) exchange reg 95.0 0.02 6.8E-07 39.3 3.5 47 2-50 39-86 (90)
83 2vz5_A TAX1-binding protein 3; 95.0 0.019 6.5E-07 43.6 3.6 46 2-50 75-123 (139)
84 2kom_A Partitioning defective 95.0 0.021 7.2E-07 42.0 3.7 49 2-50 69-119 (121)
85 1qau_A Neuronal nitric oxide s 94.9 0.024 8.2E-07 40.3 3.9 49 2-50 37-86 (112)
86 1mfg_A ERB-B2 interacting prot 94.9 0.038 1.3E-06 38.2 4.7 46 2-50 46-92 (95)
87 3khf_A Microtubule-associated 94.7 0.023 7.8E-07 39.6 3.3 44 2-49 45-91 (99)
88 2pkt_A PDZ and LIM domain prot 94.7 0.037 1.3E-06 38.0 4.3 47 2-50 38-85 (91)
89 3qe1_A Sorting nexin-27, G pro 94.7 0.027 9.2E-07 39.8 3.6 47 2-50 54-101 (107)
90 2r4h_A Membrane-associated gua 94.7 0.029 9.8E-07 40.5 3.8 48 2-50 60-108 (112)
91 1va8_A Maguk P55 subfamily mem 94.6 0.026 9E-07 40.8 3.5 46 2-50 59-107 (113)
92 1uew_A Membrane associated gua 94.6 0.039 1.3E-06 39.7 4.4 46 2-50 54-102 (114)
93 3i4w_A Disks large homolog 4; 94.5 0.033 1.1E-06 38.9 3.8 48 2-50 46-94 (104)
94 3r0h_A INAD, inactivation-NO-a 94.5 0.032 1.1E-06 43.1 3.8 48 2-50 147-195 (206)
95 1whd_A RGS3, regulator of G-pr 94.4 0.032 1.1E-06 39.4 3.5 45 2-50 47-94 (100)
96 1uf1_A KIAA1526 protein; PDZ d 94.4 0.058 2E-06 39.5 5.0 43 2-49 57-102 (128)
97 2jxo_A Ezrin-radixin-moesin-bi 94.4 0.021 7.1E-07 39.7 2.4 46 2-50 44-92 (98)
98 2edz_A PDZ domain-containing p 94.4 0.053 1.8E-06 39.0 4.6 46 2-51 49-97 (114)
99 1g9o_A NHE-RF; PDZ domain, com 94.4 0.043 1.5E-06 37.5 3.9 47 2-49 38-85 (91)
100 2e7k_A Maguk P55 subfamily mem 94.4 0.026 8.8E-07 39.5 2.8 46 2-50 40-87 (91)
101 3tsv_A Tight junction protein 94.3 0.037 1.3E-06 41.2 3.8 48 2-50 62-111 (124)
102 1nf3_C PAR-6B; semi-CRIB motif 94.3 0.029 9.9E-07 41.5 3.2 48 2-50 76-124 (128)
103 3l4f_D SH3 and multiple ankyri 94.3 0.059 2E-06 40.4 4.9 44 2-49 76-122 (132)
104 1vb7_A PDZ and LIM domain 2; P 94.3 0.036 1.2E-06 38.5 3.5 45 2-50 41-88 (94)
105 1n7t_A 99-MER peptide of densi 94.3 0.052 1.8E-06 38.1 4.3 47 2-51 54-101 (103)
106 3r68_A Na(+)/H(+) exchange reg 94.3 0.041 1.4E-06 37.8 3.7 46 2-49 40-86 (95)
107 2gzv_A PRKCA-binding protein; 94.3 0.028 9.4E-07 41.2 2.9 46 2-50 61-109 (114)
108 1v5l_A PDZ and LIM domain 3; a 94.2 0.037 1.3E-06 39.1 3.4 45 2-50 40-87 (103)
109 2eeg_A PDZ and LIM domain prot 94.1 0.044 1.5E-06 38.0 3.5 45 2-50 43-90 (94)
110 1wi2_A Riken cDNA 2700099C19; 94.0 0.043 1.5E-06 38.9 3.4 45 2-49 52-97 (104)
111 1wf7_A Enigma homologue protei 94.0 0.038 1.3E-06 39.0 3.1 45 2-50 40-87 (103)
112 1rgw_A ZAsp protein; PDZ, cyph 94.0 0.048 1.7E-06 36.7 3.5 47 2-50 36-83 (85)
113 1y7n_A Amyloid beta A4 precurs 94.0 0.044 1.5E-06 38.7 3.4 43 2-48 42-87 (90)
114 3ngh_A PDZ domain-containing p 93.9 0.053 1.8E-06 38.2 3.8 47 2-50 37-84 (106)
115 3r0h_A INAD, inactivation-NO-a 93.9 0.052 1.8E-06 41.9 4.0 49 2-50 56-107 (206)
116 1x5q_A LAP4 protein; PDZ domai 93.9 0.06 2E-06 38.2 4.0 47 2-50 57-104 (110)
117 1b8q_A Protein (neuronal nitri 93.9 0.036 1.2E-06 40.5 2.9 49 2-50 44-93 (127)
118 2yuy_A RHO GTPase activating p 93.8 0.027 9.3E-07 41.4 2.2 44 2-49 72-118 (126)
119 1m5z_A GRIP, AMPA receptor int 93.7 0.07 2.4E-06 36.4 4.0 45 2-50 43-90 (91)
120 2kjp_A Uncharacterized protein 93.7 0.11 3.8E-06 36.8 5.2 60 2-75 12-73 (91)
121 1um7_A Synapse-associated prot 93.6 0.08 2.7E-06 37.4 4.3 46 2-50 50-98 (113)
122 1v6b_A Harmonin isoform A1; st 93.6 0.047 1.6E-06 39.9 3.2 47 2-50 54-106 (118)
123 2cs5_A Tyrosine-protein phosph 93.6 0.052 1.8E-06 39.2 3.3 49 2-52 52-107 (119)
124 2d90_A PDZ domain containing p 93.5 0.09 3.1E-06 36.8 4.4 44 2-49 41-87 (102)
125 2d8i_A T-cell lymphoma invasio 93.5 0.076 2.6E-06 39.4 4.1 42 2-49 55-99 (114)
126 2edp_A Fragment, shroom family 93.4 0.054 1.8E-06 38.2 3.1 46 2-50 46-93 (100)
127 2eeh_A PDZ domain-containing p 93.4 0.052 1.8E-06 38.0 3.0 45 2-49 47-92 (100)
128 1vae_A Rhophilin 2, rhophilin, 93.4 0.052 1.8E-06 39.8 3.0 46 2-50 47-95 (111)
129 2qbw_A PDZ-fibronectin fusion 93.4 0.098 3.3E-06 40.1 4.7 47 2-51 35-82 (195)
130 3k1r_A Harmonin; protein-prote 93.3 0.064 2.2E-06 42.1 3.7 45 2-49 121-166 (192)
131 1q3o_A Shank1; PDZ, GKAP, pept 93.3 0.085 2.9E-06 37.5 4.0 46 2-49 56-102 (109)
132 3gge_A PDZ domain-containing p 93.3 0.09 3.1E-06 39.2 4.2 39 2-40 39-78 (95)
133 2eaq_A LIM domain only protein 93.0 0.07 2.4E-06 36.4 3.0 46 2-50 39-88 (90)
134 1p1d_A PDZ45, glutamate recept 93.0 0.094 3.2E-06 40.7 4.1 47 2-50 47-97 (196)
135 1x5n_A Harmonin; PDZ domain, u 92.9 0.095 3.3E-06 37.4 3.8 46 2-50 52-98 (114)
136 1uez_A KIAA1526 protein; PDZ d 92.8 0.053 1.8E-06 38.0 2.3 45 2-49 46-91 (101)
137 1wh1_A KIAA1095 protein; PDZ d 92.8 0.089 3E-06 38.5 3.5 47 2-50 59-106 (124)
138 2dls_A PDZ-rhogef, RHO guanine 92.5 0.14 4.8E-06 35.5 4.1 46 2-50 40-86 (93)
139 2kl1_A YLBL protein; structure 92.5 0.29 9.8E-06 34.4 5.8 60 2-75 16-77 (94)
140 2w4f_A Protein LAP4; structura 92.3 0.14 4.9E-06 35.1 3.9 45 2-50 45-92 (97)
141 1tp5_A Presynaptic density pro 92.2 0.13 4.6E-06 36.9 3.8 48 2-50 49-97 (119)
142 2kjd_A Sodium/hydrogen exchang 92.2 0.1 3.4E-06 37.9 3.1 48 2-50 44-92 (128)
143 2z17_A Pleckstrin homology SEC 92.2 0.068 2.3E-06 37.7 2.1 43 2-46 59-102 (104)
144 3bpu_A Membrane-associated gua 92.1 0.2 6.7E-06 34.1 4.4 45 2-50 37-85 (88)
145 3soe_A Membrane-associated gua 92.0 0.21 7.1E-06 37.9 4.8 46 5-50 45-92 (113)
146 3gsl_A Disks large homolog 4; 92.0 0.16 5.6E-06 38.2 4.2 48 2-50 46-94 (196)
147 1m3v_A FLIN4, fusion of the LI 91.9 0.02 7E-07 42.3 -0.8 36 110-145 34-81 (122)
148 2eei_A PDZ domain-containing p 91.9 0.087 3E-06 37.1 2.4 45 2-50 43-90 (106)
149 1z87_A Alpha-1-syntrophin; pro 91.4 0.09 3.1E-06 44.9 2.5 48 2-50 114-162 (263)
150 2qt5_A Glutamate receptor-inte 91.4 0.22 7.5E-06 38.5 4.4 48 2-50 44-92 (200)
151 2csj_A TJP2 protein; PDZ domai 90.9 0.27 9.1E-06 35.4 4.2 44 2-50 57-103 (117)
152 2vsv_A Rhophilin-2; scaffold p 90.9 0.19 6.6E-06 37.0 3.5 47 2-51 55-104 (109)
153 3tsz_A Tight junction protein 90.7 0.18 6.1E-06 44.7 3.8 48 2-50 42-91 (391)
154 1uit_A Human discs large 5 pro 90.3 0.21 7.3E-06 35.8 3.2 44 2-49 53-99 (117)
155 2edv_A FERM and PDZ domain-con 90.2 0.4 1.4E-05 33.5 4.5 44 2-50 42-88 (96)
156 2yub_A LIMK-2, LIM domain kina 90.0 0.29 1E-05 36.2 3.9 44 2-49 57-103 (118)
157 2lob_A Golgi-associated PDZ an 89.2 0.063 2.2E-06 39.3 0.0 45 2-47 64-109 (112)
158 3shw_A Tight junction protein 89.7 0.24 8.2E-06 45.6 3.8 47 2-49 34-82 (468)
159 2zpm_A Regulator of sigma E pr 88.7 0.41 1.4E-05 32.5 3.5 46 2-50 15-61 (91)
160 3id1_A Regulator of sigma E pr 88.0 0.42 1.4E-05 33.7 3.4 46 2-50 13-60 (95)
161 1ujv_A Membrane associated gua 87.8 0.69 2.4E-05 32.5 4.4 44 5-50 43-90 (96)
162 2i6v_A General secretion pathw 87.4 0.46 1.6E-05 32.6 3.2 44 3-49 31-76 (87)
163 3suz_A Amyloid beta A4 precurs 87.4 0.39 1.3E-05 42.1 3.5 47 2-50 243-293 (388)
164 2xkx_A Disks large homolog 4; 87.2 0.44 1.5E-05 45.0 3.9 48 2-50 100-148 (721)
165 2egp_A Tripartite motif-contai 87.0 0.3 1E-05 32.4 1.9 37 109-145 13-65 (79)
166 2ecy_A TNF receptor-associated 86.9 0.42 1.4E-05 31.1 2.6 38 109-146 16-63 (66)
167 1bor_A Transcription factor PM 86.8 0.56 1.9E-05 30.2 3.2 40 109-148 7-52 (56)
168 2ecv_A Tripartite motif-contai 86.6 0.35 1.2E-05 32.0 2.2 37 109-145 20-71 (85)
169 1g25_A CDK-activating kinase a 86.3 0.21 7.3E-06 32.5 0.9 37 110-146 5-56 (65)
170 3kzd_A TIAM-1, T-lymphoma inva 85.7 0.63 2.2E-05 34.1 3.3 33 2-37 46-81 (94)
171 1w9e_A Syntenin 1; cell adhesi 85.0 0.91 3.1E-05 34.3 4.0 46 2-50 38-86 (166)
172 2ecw_A Tripartite motif-contai 84.8 0.39 1.3E-05 31.8 1.7 37 109-145 20-71 (85)
173 2xkx_A Disks large homolog 4; 84.7 0.72 2.4E-05 43.5 4.0 49 2-51 342-391 (721)
174 2h2b_A Tight junction protein 84.5 1.7 5.7E-05 30.4 4.9 44 2-50 50-96 (107)
175 3i18_A LMO2051 protein; alpha- 84.1 1.6 5.4E-05 30.7 4.7 45 2-50 18-64 (100)
176 2krg_A Na(+)/H(+) exchange reg 83.9 0.35 1.2E-05 39.7 1.3 45 2-50 44-92 (216)
177 2i4s_A General secretion pathw 83.3 0.72 2.5E-05 32.8 2.6 42 5-49 51-94 (105)
178 2pzd_A Serine protease HTRA2; 81.8 1.1 3.7E-05 31.8 3.1 43 2-49 46-89 (113)
179 2d8t_A Dactylidin, ring finger 81.7 0.1 3.4E-06 34.7 -2.2 47 109-155 16-71 (71)
180 2djb_A Polycomb group ring fin 81.5 0.66 2.3E-05 30.7 1.8 39 109-147 16-64 (72)
181 3ztg_A E3 ubiquitin-protein li 81.5 0.56 1.9E-05 32.2 1.4 37 109-145 14-62 (92)
182 1chc_A Equine herpes virus-1 r 81.3 0.73 2.5E-05 29.8 1.9 36 109-144 6-51 (68)
183 1t1h_A Gspef-atpub14, armadill 81.1 0.31 1.1E-05 32.5 0.0 37 109-145 9-55 (78)
184 2hga_A Conserved protein MTH13 79.8 2 6.7E-05 32.2 4.1 42 2-47 36-79 (125)
185 2ysl_A Tripartite motif-contai 79.7 0.48 1.7E-05 31.0 0.6 38 109-146 21-70 (73)
186 2yur_A Retinoblastoma-binding 79.6 0.67 2.3E-05 31.1 1.3 41 109-149 16-68 (74)
187 3gox_A Restriction endonucleas 79.0 0.73 2.5E-05 39.2 1.6 79 65-152 59-156 (200)
188 1fc6_A Photosystem II D1 prote 78.7 1.6 5.4E-05 37.8 3.7 46 2-50 110-158 (388)
189 1e4u_A Transcriptional repress 77.7 0.97 3.3E-05 31.6 1.7 40 109-148 12-65 (78)
190 1jm7_A BRCA1, breast cancer ty 77.4 0.8 2.7E-05 32.2 1.2 38 109-146 22-71 (112)
191 1x4j_A Ring finger protein 38; 77.0 0.95 3.2E-05 30.1 1.4 40 108-147 23-74 (75)
192 2ea6_A Ring finger protein 4; 76.8 0.41 1.4E-05 30.7 -0.4 37 109-145 16-68 (69)
193 3k50_A Putative S41 protease; 76.8 1.8 6.2E-05 38.7 3.6 45 2-50 101-145 (403)
194 2ecg_A Baculoviral IAP repeat- 76.1 0.91 3.1E-05 30.6 1.2 37 109-145 26-68 (75)
195 2ecn_A Ring finger protein 141 75.5 0.38 1.3E-05 31.4 -0.8 47 109-155 16-70 (70)
196 1v87_A Deltex protein 2; ring- 75.0 1 3.5E-05 32.0 1.2 44 109-152 26-101 (114)
197 3suz_A Amyloid beta A4 precurs 74.3 0.64 2.2E-05 40.7 0.0 43 2-48 326-371 (388)
198 2ect_A Ring finger protein 126 74.0 1.7 5.7E-05 28.9 2.0 38 109-146 16-65 (78)
199 2p3w_A Probable serine proteas 73.2 2.7 9.1E-05 29.7 3.1 43 2-49 46-89 (112)
200 2csy_A Zinc finger protein 183 73.2 0.71 2.4E-05 31.1 0.0 36 109-144 16-60 (81)
201 2l97_A HTRA, putative serine p 72.7 4.7 0.00016 29.9 4.5 44 2-49 68-113 (134)
202 4ic3_A E3 ubiquitin-protein li 72.5 1.2 4.2E-05 30.1 1.1 37 109-145 25-67 (74)
203 3fl2_A E3 ubiquitin-protein li 71.6 1.2 4.1E-05 32.4 0.9 37 109-145 53-99 (124)
204 2ckl_B Ubiquitin ligase protei 70.8 0.91 3.1E-05 34.6 0.1 37 110-146 56-103 (165)
205 4ayc_A E3 ubiquitin-protein li 70.2 0.96 3.3E-05 33.8 0.1 36 110-145 55-99 (138)
206 2jne_A Hypothetical protein YF 69.6 0.87 3E-05 35.2 -0.2 37 109-145 33-73 (101)
207 2xeu_A Ring finger protein 4; 69.1 0.76 2.6E-05 29.0 -0.6 38 109-146 4-57 (64)
208 3qik_A Phosphatidylinositol 3, 69.0 3.1 0.00011 31.2 2.8 33 2-37 50-85 (101)
209 3l11_A E3 ubiquitin-protein li 68.9 1.3 4.3E-05 31.8 0.6 37 109-145 16-62 (115)
210 3ng2_A RNF4, snurf, ring finge 68.3 0.82 2.8E-05 29.6 -0.5 38 109-146 11-64 (71)
211 1te0_A Protease DEGS; two doma 66.3 5.6 0.00019 33.2 4.1 46 2-50 255-302 (318)
212 4a8c_A Periplasmic PH-dependen 66.2 5 0.00017 35.5 3.9 45 2-50 374-419 (436)
213 2ecj_A Tripartite motif-contai 65.7 1.8 6.2E-05 26.8 0.7 31 109-139 16-58 (58)
214 2jrp_A Putative cytoplasmic pr 64.2 2.1 7.3E-05 31.6 1.0 35 110-144 4-42 (81)
215 1iym_A EL5; ring-H2 finger, ub 64.1 3.7 0.00013 25.3 2.0 36 109-144 6-54 (55)
216 4a8c_A Periplasmic PH-dependen 63.8 6.4 0.00022 34.8 4.1 46 2-50 274-321 (436)
217 3rle_A Golgi reassembly-stacki 62.3 5.2 0.00018 31.6 3.0 46 2-50 123-169 (209)
218 4ap4_A E3 ubiquitin ligase RNF 61.2 1.5 5.2E-05 31.0 -0.3 39 109-147 8-62 (133)
219 2ct2_A Tripartite motif protei 61.1 2.3 7.9E-05 28.4 0.6 38 109-146 16-69 (88)
220 2xqn_T Testin, TESS; metal-bin 59.8 1.7 6E-05 31.4 -0.2 36 110-145 32-75 (126)
221 2kiz_A E3 ubiquitin-protein li 59.7 2.8 9.7E-05 27.1 0.9 37 109-145 15-63 (69)
222 1y8t_A Hypothetical protein RV 59.7 9.2 0.00031 31.9 4.2 45 2-49 253-299 (324)
223 2xjy_A Rhombotin-2; oncoprotei 59.5 1.3 4.6E-05 32.2 -0.8 35 110-144 31-77 (131)
224 2c2l_A CHIP, carboxy terminus 59.5 2.8 9.7E-05 33.2 1.0 38 108-145 208-255 (281)
225 2egq_A FHL1 protein; LIM domai 58.5 13 0.00045 24.4 4.0 23 123-145 3-27 (77)
226 2ea5_A Cell growth regulator w 58.2 6.9 0.00024 26.3 2.6 38 108-145 15-58 (68)
227 2ysj_A Tripartite motif-contai 57.0 3.1 0.00011 26.5 0.7 31 109-139 21-63 (63)
228 2cup_A Skeletal muscle LIM-pro 55.1 3.2 0.00011 28.8 0.6 35 110-144 35-77 (101)
229 2rgt_A Fusion of LIM/homeobox 55.0 3.5 0.00012 31.6 0.8 35 110-144 35-76 (169)
230 2y43_A E3 ubiquitin-protein li 54.9 3.2 0.00011 28.8 0.5 37 109-145 23-69 (99)
231 2ckl_A Polycomb group ring fin 54.8 3.1 0.00011 29.4 0.5 38 109-146 16-63 (108)
232 2jtn_A LIM domain-binding prot 53.3 3.5 0.00012 32.0 0.5 36 110-145 89-131 (182)
233 1rmd_A RAG1; V(D)J recombinati 53.3 3 0.0001 29.8 0.1 38 109-146 24-71 (116)
234 2ct0_A Non-SMC element 1 homol 52.9 12 0.0004 26.4 3.2 46 104-151 11-70 (74)
235 3rle_A Golgi reassembly-stacki 52.3 8.3 0.00028 30.4 2.6 45 2-49 27-74 (209)
236 1jm7_B BARD1, BRCA1-associated 52.3 8.3 0.00028 27.8 2.4 37 109-145 23-67 (117)
237 1j2o_A FLIN2, fusion of rhombo 52.2 3.7 0.00013 29.7 0.5 23 110-132 32-62 (114)
238 2ep4_A Ring finger protein 24; 52.0 4.1 0.00014 26.7 0.6 38 109-146 16-65 (74)
239 1kbe_A Kinase suppressor of RA 51.9 2.1 7.3E-05 28.3 -0.8 23 108-132 14-36 (49)
240 3pv2_A DEGQ; trypsin fold, PDZ 51.4 11 0.00038 33.7 3.5 46 2-50 293-340 (451)
241 2ecm_A Ring finger and CHY zin 51.1 5.2 0.00018 24.5 1.0 36 109-144 6-54 (55)
242 3stj_A Protease DEGQ; serine p 50.8 11 0.00038 32.3 3.4 46 2-50 274-321 (345)
243 1lcy_A HTRA2 serine protease; 50.8 11 0.00037 31.7 3.2 43 2-49 267-310 (325)
244 2cuq_A Four and A half LIM dom 48.7 11 0.00036 25.1 2.3 23 122-144 2-26 (80)
245 3hct_A TNF receptor-associated 48.4 3.5 0.00012 29.8 -0.1 37 109-145 19-65 (118)
246 2c6a_A Ubiquitin-protein ligas 47.9 6.3 0.00022 26.6 1.1 25 109-134 14-39 (46)
247 1z6u_A NP95-like ring finger p 47.8 4.2 0.00014 31.2 0.2 38 109-146 79-126 (150)
248 1x4l_A Skeletal muscle LIM-pro 47.5 19 0.00066 23.3 3.5 32 109-144 6-46 (72)
249 1iml_A CRIP, cysteine rich int 46.3 6.6 0.00022 26.0 1.0 35 110-144 29-72 (76)
250 1rut_X Flinc4, fusion protein 45.8 2.7 9.1E-05 32.9 -1.2 12 54-65 5-16 (188)
251 2y1n_A E3 ubiquitin-protein li 45.8 5.5 0.00019 36.2 0.7 38 108-145 332-379 (389)
252 4fgm_A Aminopeptidase N family 45.2 15 0.0005 34.4 3.4 46 2-50 507-553 (597)
253 3num_A Serine protease HTRA1; 42.9 5.1 0.00017 33.7 0.0 58 2-74 265-323 (332)
254 1x3h_A Leupaxin; paxillin fami 42.7 12 0.00041 24.8 1.8 23 122-144 2-26 (80)
255 3lrq_A E3 ubiquitin-protein li 42.6 5.2 0.00018 28.2 -0.0 37 109-145 23-70 (100)
256 1x6a_A LIMK-2, LIM domain kina 42.6 13 0.00045 24.7 2.0 11 109-119 16-26 (81)
257 2cr8_A MDM4 protein; ZF-ranbp 42.5 7.6 0.00026 27.0 0.8 26 109-135 12-38 (53)
258 2k0a_A PRE-mRNA-splicing facto 42.3 5.3 0.00018 31.2 -0.0 27 104-130 53-79 (109)
259 2yho_A E3 ubiquitin-protein li 40.5 12 0.0004 25.8 1.6 37 109-145 19-61 (79)
260 2kr4_A Ubiquitin conjugation f 39.9 6.2 0.00021 27.4 0.0 37 109-145 15-60 (85)
261 1k32_A Tricorn protease; prote 39.4 26 0.00089 32.9 4.2 45 2-49 767-813 (1045)
262 3t6p_A Baculoviral IAP repeat- 39.2 14 0.00049 32.4 2.3 37 109-145 296-338 (345)
263 3qo6_A Protease DO-like 1, chl 39.2 23 0.00078 30.1 3.5 37 12-50 282-320 (348)
264 2ehe_A Four and A half LIM dom 38.0 16 0.00056 24.3 2.0 23 122-144 2-26 (82)
265 1x63_A Skeletal muscle LIM-pro 36.6 17 0.0006 24.1 1.9 23 122-144 2-26 (82)
266 3nw0_A Non-structural maintena 36.5 19 0.00066 30.0 2.6 37 108-146 180-230 (238)
267 2dlo_A Thyroid receptor-intera 35.0 31 0.0011 22.9 3.0 23 122-144 3-26 (81)
268 1x68_A FHL5 protein; four-and- 33.8 24 0.00084 23.2 2.3 32 109-144 6-46 (76)
269 2m0e_A Zinc finger and BTB dom 33.4 20 0.0007 17.5 1.5 12 135-146 4-15 (29)
270 2a20_A Regulating synaptic mem 33.0 9.1 0.00031 27.3 -0.0 40 108-149 9-49 (62)
271 2l0b_A E3 ubiquitin-protein li 32.2 9.2 0.00032 26.5 -0.1 38 108-145 40-89 (91)
272 1ryq_A DNA-directed RNA polyme 31.5 31 0.0011 24.7 2.6 40 109-169 12-51 (69)
273 1v6g_A Actin binding LIM prote 31.1 41 0.0014 22.3 3.1 9 110-118 17-25 (81)
274 1wgm_A Ubiquitin conjugation f 30.9 12 0.00041 26.9 0.3 37 109-145 23-69 (98)
275 2iyb_E Testin, TESS, TES; LIM 30.9 25 0.00085 22.7 1.9 32 109-144 3-43 (65)
276 2ecl_A Ring-box protein 2; RNF 28.7 25 0.00087 23.8 1.7 25 121-145 48-76 (81)
277 2lvu_A Zinc finger and BTB dom 34.7 12 0.00041 18.5 0.0 12 135-146 4-15 (26)
278 1x4k_A Skeletal muscle LIM-pro 26.9 45 0.0015 21.4 2.6 34 108-145 5-45 (72)
279 2cu8_A Cysteine-rich protein 2 26.6 46 0.0016 21.8 2.6 34 108-145 9-48 (76)
280 2lvt_A Zinc finger and BTB dom 32.3 14 0.00048 18.6 0.0 13 135-147 4-16 (29)
281 2ds5_A CLPX, ATP-dependent CLP 26.1 31 0.001 23.1 1.7 19 135-156 13-31 (51)
282 1i4j_A 50S ribosomal protein L 25.9 24 0.00082 26.4 1.2 19 24-43 25-43 (110)
283 1x61_A Thyroid receptor intera 25.5 62 0.0021 20.7 3.1 32 109-144 6-44 (72)
284 1klr_A Zinc finger Y-chromosom 25.5 31 0.001 16.9 1.3 12 135-146 4-15 (30)
285 1wyh_A SLIM 2, skeletal muscle 25.4 58 0.002 20.8 2.9 34 108-145 5-45 (72)
286 2lvr_A Zinc finger and BTB dom 30.9 15 0.00052 18.4 0.0 12 135-146 5-16 (30)
287 2kre_A Ubiquitin conjugation f 25.0 16 0.00054 26.3 0.1 37 109-145 30-75 (100)
288 1e7l_A GP49, recombination end 24.8 26 0.00088 28.5 1.3 15 131-145 18-32 (157)
289 1a7i_A QCRP2 (LIM1); LIM domai 24.7 25 0.00084 23.4 1.0 9 110-118 9-17 (81)
290 3f6q_B LIM and senescent cell 24.5 39 0.0013 21.4 1.9 35 108-146 11-52 (72)
291 3u6p_A Formamidopyrimidine-DNA 23.6 19 0.00067 30.5 0.4 30 100-129 237-271 (273)
292 1znf_A 31ST zinc finger from X 23.5 27 0.00093 17.0 0.8 11 135-145 3-13 (27)
293 1ovx_A ATP-dependent CLP prote 23.4 36 0.0012 24.2 1.7 19 135-156 20-38 (67)
294 3r8s_S 50S ribosomal protein L 23.4 27 0.00093 26.1 1.1 18 24-42 25-42 (110)
295 1ee8_A MUTM (FPG) protein; bet 23.4 22 0.00076 30.0 0.7 32 99-130 226-262 (266)
296 2ftc_M Mitochondrial ribosomal 23.3 26 0.0009 26.2 1.0 19 24-43 21-39 (110)
297 3dpl_R Ring-box protein 1; ubi 23.0 20 0.00068 26.3 0.3 22 122-143 74-99 (106)
298 2f42_A STIP1 homology and U-bo 22.7 19 0.00063 29.2 0.1 38 108-145 106-153 (179)
299 2cur_A Skeletal muscle LIM-pro 22.6 49 0.0017 21.1 2.2 32 109-144 6-42 (69)
300 2elr_A Zinc finger protein 406 22.1 29 0.00098 18.3 0.8 11 135-145 11-21 (36)
301 2csz_A Synaptotagmin-like prot 22.0 41 0.0014 24.5 1.8 49 89-141 4-58 (76)
302 1ard_A Yeast transcription fac 21.9 30 0.001 17.0 0.8 11 135-145 4-14 (29)
303 1vk6_A NADH pyrophosphatase; 1 21.6 69 0.0024 26.7 3.4 59 109-174 108-169 (269)
304 1paa_A Yeast transcription fac 21.5 34 0.0012 17.0 1.0 12 135-146 4-15 (30)
305 2kdx_A HYPA, hydrogenase/ureas 21.4 59 0.002 23.9 2.6 43 109-165 74-116 (119)
306 1vd4_A Transcription initiatio 20.8 29 0.00099 21.6 0.7 18 134-151 40-57 (62)
307 2m0d_A Zinc finger and BTB dom 20.6 20 0.0007 17.7 -0.0 11 135-145 5-15 (30)
308 2dar_A PDZ and LIM domain prot 20.4 1E+02 0.0034 20.9 3.5 35 107-145 24-63 (90)
309 1k3x_A Endonuclease VIII; hydr 20.1 25 0.00087 29.5 0.4 29 101-129 227-260 (262)
310 4ar0_A Type IV pilus biogenesi 20.0 67 0.0023 24.3 2.7 33 14-46 63-95 (128)
No 1
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=96.90 E-value=0.00063 Score=49.23 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=39.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcc--ccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYA--SPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a--~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ..++++..+|++.+|+.+ .+=.|.+.+.|.
T Consensus 44 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~ 95 (108)
T 3cbz_A 44 GAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95 (108)
T ss_dssp SHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECC
T ss_pred ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeC
Confidence 7899999999999999942 355666779999999887 556699988764
No 2
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=96.61 E-value=0.0017 Score=45.35 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=38.9
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++.+.|++||+|+++. ...+++..+|+.++|+.+.. .|.+.+.+.-
T Consensus 32 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~-~v~L~v~~~~ 81 (88)
T 3e17_A 32 GLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRDL 81 (88)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTT-EEEEEECCC-
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEeCCC
Confidence 7899999999999999942 34556789999999997655 8888877543
No 3
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.60 E-value=0.0012 Score=47.81 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=37.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcc----ccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYA----SPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a----~PYkv~~~l~r 49 (199)
|||++.+.|++||+|+++- ..++++.++||+.+|+.+ +.=.+.|.+.|
T Consensus 43 s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r 95 (103)
T 1ufx_A 43 GSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE 95 (103)
T ss_dssp SHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECC
T ss_pred ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEE
Confidence 6889999999999999954 556678899999999876 33345565554
No 4
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=96.46 E-value=0.0018 Score=44.43 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=37.5
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccc-eEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPY-EVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PY-kv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..+|++.+|..+.+- .|.+.+.|.
T Consensus 38 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~ 88 (90)
T 2q9v_A 38 GAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88 (90)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence 7899999999999999932 233445678899988877654 688888764
No 5
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=96.43 E-value=0.0028 Score=45.52 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=39.3
Q ss_pred CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++.+.|++||+|++ |...+ +.++|++.+|+.+..-.|.+.+.|..
T Consensus 55 spA~~aG~L~~GD~Il~--Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 55 GVAERSGGLLPGDRLVS--VNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp CHHHHHTCCCTTCEEEE--ESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred CHHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 78889999999999999 66554 45899999998875558999988754
No 6
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=96.38 E-value=0.0033 Score=46.30 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=38.3
Q ss_pred CccccccccCCCCeeeEEEEeec----ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR----HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~----n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |... ++.++|++.+|+. ..-.|.|.+.|.
T Consensus 65 spA~~aG~L~~GD~Il~--ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~ 114 (128)
T 2db5_A 65 SVADRDQRLKENDQILA--INHTPLDQNISHQQAIALLQQ-TTGSLRLIVARE 114 (128)
T ss_dssp SHHHHTCCCCSSCBEEE--ESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcC
Confidence 78999999999999999 6654 4569999999987 457889998876
No 7
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.34 E-value=0.0028 Score=46.23 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=37.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++.+++++.+|+.+ .=.|.+.++|.
T Consensus 60 s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 108 (117)
T 1ujd_A 60 GSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQ-SGEAEICVRLD 108 (117)
T ss_dssp CHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCC-SSCEEEEEESS
T ss_pred CHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC-CCEEEEEEEEC
Confidence 7899999999999999943 344455679999999874 44688888764
No 8
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=96.33 E-value=0.0019 Score=47.03 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=36.3
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccc---cceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYAS---PYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~---PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ..++++.+++++.+|+.+. -=.+.+.+.|.
T Consensus 52 s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~ 104 (109)
T 1wi4_A 52 GDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104 (109)
T ss_dssp SHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECC
T ss_pred ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeC
Confidence 7899999999999999942 3344556899999998776 34555665553
No 9
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=96.33 E-value=0.0039 Score=42.94 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=35.6
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+|+.+.. .|.+.+.|.
T Consensus 44 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~-~v~l~v~R~ 92 (94)
T 2fe5_A 44 GAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD-MVYLKVAKP 92 (94)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCS-EEEEEEECC
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEcC
Confidence 7888888899999999942 33444556888888876654 788887763
No 10
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=96.26 E-value=0.004 Score=44.79 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=37.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+|+.+.- .|.+.+.|.
T Consensus 43 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~ 91 (106)
T 4amh_A 43 GAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSD-FVYLKVAKP 91 (106)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCS-EEEEEEECC
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCC-eEEEEEEeC
Confidence 7899999999999999942 33455668899988877644 889998874
No 11
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.25 E-value=0.0045 Score=43.97 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=38.3
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccc-cceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYAS-PYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~-PYkv~~~l~reI 51 (199)
|||++.+.|++||+|+++- ..++++.++|++.+|+.+. --.|.+.+.|..
T Consensus 45 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 96 (103)
T 1uep_A 45 GSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96 (103)
T ss_dssp STTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCC
Confidence 7899999999999999931 2344456789999998764 357888888764
No 12
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.21 E-value=0.0036 Score=44.49 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=36.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++.+++++.+|+.+ .-.|.+.+.|.
T Consensus 49 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~ 97 (105)
T 1wha_A 49 GAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLERE 97 (105)
T ss_dssp SSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 7888999999999999942 334455578899998865 55688888764
No 13
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=96.20 E-value=0.0042 Score=46.17 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=38.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..+|++.+|+.+ .=.|.+.+.|.
T Consensus 64 spA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~v~R~ 112 (118)
T 3b76_A 64 GVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT-SSSIVLKALEV 112 (118)
T ss_dssp SHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC-CSEEEEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 7899999999999999943 456667789999999876 44588888764
No 14
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=96.19 E-value=0.0037 Score=43.58 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=37.1
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++..-|++||+|++ |... ++.++|+..+|+.+.. .|.+.+.|.
T Consensus 36 spA~~~agL~~GD~I~~--Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~ 84 (88)
T 1kwa_A 36 GMIHRQGTLHVGDEIRE--INGISVANQTVEQLQKMLREMRG-SITFKIVPS 84 (88)
T ss_dssp SHHHHHTCCCTTCEEEE--ETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHhcCCC-cEEEEEECC
Confidence 68888788999999999 5444 4468999999988766 888888764
No 15
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=96.18 E-value=0.0034 Score=46.78 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=39.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcc------ccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYA------SPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a------~PYkv~~~l~reI 51 (199)
|||++.+.|++||+|+++- +.++++.+++|+.+|+.+ ..=.|.+.+.|..
T Consensus 66 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~ 122 (127)
T 1wg6_A 66 GAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122 (127)
T ss_dssp SSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence 7899999999999999954 556778889999999876 2346788887753
No 16
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=96.18 E-value=0.0054 Score=45.71 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=39.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ..+.++.+++|+.+|+.+..-.|.+.++|.
T Consensus 68 s~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~ 117 (130)
T 1i16_A 68 AASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK 117 (130)
T ss_dssp CCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeC
Confidence 6888888999999999941 345556679999999988666789998875
No 17
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=96.16 E-value=0.0053 Score=42.56 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=36.1
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+|+.+ .-.|.+.+.|.
T Consensus 44 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~ 92 (96)
T 1d5g_A 44 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKG 92 (96)
T ss_dssp SHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSC-CSEEEEEEECC
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 7888898899999999942 334445678999888764 35678887764
No 18
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=96.15 E-value=0.0055 Score=42.63 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=35.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ..++++..++++.+++.+. -.|.+.+.|.
T Consensus 41 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~ 89 (98)
T 2opg_A 41 GAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP-QRVRLTLYRD 89 (98)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEC
T ss_pred ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEcC
Confidence 7888988899999999942 3344555788888887654 5777877663
No 19
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=96.14 E-value=0.0051 Score=43.69 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=37.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++.+.|++||+|+++- ...+++..++++.++..+ .-.|.+.+.|.-
T Consensus 44 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 93 (105)
T 2awx_A 44 GAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-SDFVYLKVAKPT 93 (105)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-CSEEEEEEECCC
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcCC
Confidence 7889999999999999942 344556678888888765 577888887643
No 20
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=96.13 E-value=0.0054 Score=43.08 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=36.6
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++ -..++++.++|++.+|+.+..-.|.+.+.|.
T Consensus 56 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 56 GPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence 7888888 9999999994 2345556688999999775446788887763
No 21
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=96.12 E-value=0.0054 Score=45.08 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=37.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+|+.+ .-.|.+.+.|.
T Consensus 65 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~ 113 (117)
T 2byg_A 65 GAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT-SEVVYLKVGKP 113 (117)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence 7899999999999999942 334455689999999865 56788888764
No 22
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=96.07 E-value=0.0047 Score=42.86 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=37.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++.+.|++||+|+++- ...+++..+|+..+|+.+.- .|.+.+.+..
T Consensus 39 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 88 (93)
T 3o46_A 39 GAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGS 88 (93)
T ss_dssp SHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence 7899999999999999942 23444578999999977665 8888877643
No 23
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=96.06 E-value=0.0052 Score=42.93 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=35.7
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |....+ .++|++.+|+ ...-.|.+.+.|.
T Consensus 41 spA~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~ 89 (97)
T 1n7e_A 41 GLAERTGAIHIGDRILA--INSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQ 89 (97)
T ss_dssp SHHHHHTCCCTTCEEEE--ETTEECTTCCHHHHHHHHH-TCCSEEEEEEECC
T ss_pred CHHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeC
Confidence 78899988999999999 555444 5789999998 4445788888764
No 24
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=96.06 E-value=0.0056 Score=40.54 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=34.6
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |... ++..+|+..+|+...- .+.+.+.|.
T Consensus 32 s~A~~aG~l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~ 80 (81)
T 2rcz_A 32 SLAARDGNIQEGDVVLK--INGTVTENMSLTDAKTLIERSKG-KLKMVVQRD 80 (81)
T ss_dssp SHHHHHSSCCTTCEEEE--ETTEECTTCCHHHHHHHHHTSTT-EEEEEEEC-
T ss_pred ChHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHCCCC-eEEEEEEeC
Confidence 67888888999999999 5443 4457888888886544 788887763
No 25
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=96.05 E-value=0.0064 Score=42.70 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=36.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.++..+ .-.|.+.+.|.
T Consensus 45 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 93 (102)
T 2i1n_A 45 GAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA-GPVVRLVVRRR 93 (102)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS-CSEEEEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence 7889999999999999943 344556678888888763 46778887764
No 26
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=96.05 E-value=0.0059 Score=43.27 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=36.2
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+++. ..-.|.+.+.|.
T Consensus 49 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 97 (106)
T 3axa_A 49 GAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQ 97 (106)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 7899999999999999943 33445568889888865 455788887763
No 27
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=96.01 E-value=0.0067 Score=45.51 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=38.1
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++.+.|++||+|+++- ..++++.++|+..+|+.+.| -.|.+.+.|.
T Consensus 76 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 126 (131)
T 1wfg_A 76 SLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126 (131)
T ss_dssp SHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence 7899999999999999932 33444567999999988744 6788888764
No 28
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=96.01 E-value=0.0056 Score=42.49 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=37.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ....++.++|+..+|+. ..-.|.+.+.|.
T Consensus 43 spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 91 (97)
T 2jil_A 43 GPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYD 91 (97)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 7899998999999999932 23445557999999987 566788888774
No 29
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=95.97 E-value=0.0078 Score=41.24 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=35.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ....++..++++.+|.. ..-.|.+.+.|.
T Consensus 44 s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~ 92 (97)
T 2iwn_A 44 SAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMRR 92 (97)
T ss_dssp CHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 6888888899999999942 33455567888888766 556788887764
No 30
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=95.94 E-value=0.0069 Score=43.44 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=35.9
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++ -...+++..++++.+|+.+. -.|.+.+.|.
T Consensus 54 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~ 102 (116)
T 2dm8_A 54 GAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRD 102 (116)
T ss_dssp SHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCC-SEEEEEEECC
T ss_pred ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeC
Confidence 688888889999999994 23344455789998887654 6778887753
No 31
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=95.91 E-value=0.0062 Score=45.32 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=37.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..+|+..+|+.+.. .|.+.+.|.
T Consensus 70 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~ 118 (123)
T 2iwq_A 70 SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSI 118 (123)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-SEEEEEECC
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEEC
Confidence 7899999999999999932 33445557999999987644 888888763
No 32
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.90 E-value=0.0073 Score=43.95 Aligned_cols=49 Identities=24% Similarity=0.442 Sum_probs=38.2
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++.+.|++||+|+++- ...+++..++++.+|+.+ .-.|.+.+.|.-
T Consensus 58 spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~ 107 (120)
T 2eno_A 58 GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHRL 107 (120)
T ss_dssp SHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH-CSEEEEEEEEEE
T ss_pred ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 7889999999999999953 455667778898888765 446888887753
No 33
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=95.88 E-value=0.0074 Score=42.30 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=36.4
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++ -....++..+|+..+|+.+.- .|.+.+.|.
T Consensus 50 spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~ 98 (103)
T 2fcf_A 50 SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSI 98 (103)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS-SEEEEEECC
T ss_pred CcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-cEEEEEEEC
Confidence 788888889999999993 123344557889999987644 888888764
No 34
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=95.85 E-value=0.0086 Score=42.37 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=36.3
Q ss_pred Ccccccc-ccCCCCeeeEE-EEeecccchhhHHhhhhcccc---ceEEEEEee
Q psy11904 2 SHCAETW-ALNNGDRITSV-RISFRHMVYEDALTILSYASP---YEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~-~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~P---Ykv~~~l~r 49 (199)
|||++.+ +|++||+|+++ -....++..++++.+|+.+.. -.|.+.++|
T Consensus 54 spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r 106 (107)
T 3nfk_A 54 TPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP 106 (107)
T ss_dssp SHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEEC
T ss_pred CchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEc
Confidence 7889998 59999999994 234455677888888887653 367787776
No 35
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.82 E-value=0.0087 Score=42.59 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=36.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ..++++..++++.+|..+ .-.|.+.+.|.
T Consensus 51 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 99 (107)
T 1wf8_A 51 GAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT-KGNVRFVIGRE 99 (107)
T ss_dssp CHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC-CSEEEEEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEEeC
Confidence 7899999999999999932 233445678888888764 56788888775
No 36
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=95.81 E-value=0.012 Score=41.63 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=37.0
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhcc-ccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYA-SPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a-~PYkv~~~l~r 49 (199)
|||++...|++||+|++ |....+ .++|+..+|+.+ ..=.|.+.+.|
T Consensus 48 spA~~~ggl~~GD~I~~--Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 97 (101)
T 2yt7_A 48 GPAERSGALSIGDRLTA--INGTSLVGLPLAACQAAVRETKSQTSVTLSIVH 97 (101)
T ss_dssp STTGGGSSCCTTCEEEE--ESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEe
Confidence 68888889999999999 777766 789999999875 33467777765
No 37
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=95.81 E-value=0.0083 Score=40.69 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=34.1
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccc-eEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPY-EVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PY-kv~~~l~r 49 (199)
|||++.+.|++||+|++ |....+ ..+|+..+|+.+.|- .|.+.+.|
T Consensus 36 spA~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 36 GPAALDGKMETGDVIVS--VNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp SHHHHHCCCCTTCEEEE--ETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred ChHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 78888888999999999 655544 468888898876433 46666543
No 38
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=95.78 E-value=0.01 Score=41.57 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=35.6
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+|+.+ .-.|.+.+.|.
T Consensus 48 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 96 (101)
T 2jik_A 48 GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHR 96 (101)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeC
Confidence 7888888899999999942 334445568888888764 34688888764
No 39
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=95.74 E-value=0.0092 Score=40.75 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=35.1
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..+|+..+|+.... .|.+.+.|.
T Consensus 34 s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~ 82 (92)
T 3cyy_A 34 SLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQRD 82 (92)
T ss_dssp CHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT-EEEEEEEC-
T ss_pred ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-cEEEEEEeC
Confidence 6888888899999999931 23344567888888877554 788888764
No 40
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=95.73 E-value=0.0084 Score=43.30 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=35.9
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++ -..++++.+++++.+|..+ .-.|.+.+.|.
T Consensus 61 spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~r~ 109 (117)
T 2ehr_A 61 SPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA-GNPVVFIVQSL 109 (117)
T ss_dssp STTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTS-CSSEEEEECCB
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 789999999999999994 1234455688888888763 56777777653
No 41
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=95.73 E-value=0.0094 Score=40.96 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=35.9
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..+++..+++.+ .-.|.+.+.|.
T Consensus 40 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 88 (92)
T 2qg1_A 40 GIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS-LGTVTLEVGRI 88 (92)
T ss_dssp SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEECC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcc
Confidence 7899999999999999942 234455668888888764 34588888765
No 42
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=95.71 E-value=0.0065 Score=44.62 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=38.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ..++++.++|+..+|+. ..-.|.+.+.|.
T Consensus 57 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 105 (129)
T 2dmz_A 57 SAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLVRR 105 (129)
T ss_dssp SHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 7888999999999999942 33556667999999988 666788888764
No 43
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=95.70 E-value=0.0092 Score=42.98 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=36.6
Q ss_pred CccccccccCCCCeeeEE-EEeec-ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFR-HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~-n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++ -...+ ++..+|++.+|+.+ .-.|.+.+.|.
T Consensus 60 spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~-~~~v~l~v~R~ 109 (117)
T 2o2t_A 60 SVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA-KDTVQLVIARG 109 (117)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC-CSEEEEEEESS
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence 789999999999999993 12333 55789999988764 45788888764
No 44
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.70 E-value=0.0086 Score=42.18 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=34.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++.+++++.+|+. ..-.|.+.+.|.
T Consensus 49 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 97 (104)
T 2djt_A 49 GPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRP 97 (104)
T ss_dssp CHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 6888888899999999942 33444556888888876 345677777653
No 45
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=95.70 E-value=0.0099 Score=44.10 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=37.7
Q ss_pred CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++.+.|++||+|++ |...+ +.++|+..+|+.+.+ =.|.+.+.|.
T Consensus 54 spA~~aG~L~~GD~Il~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 104 (129)
T 2kpk_A 54 GPAALDGKMETGDVIVS--VNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG 104 (129)
T ss_dssp SHHHHHSSCCTTCEEEE--ETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEEC
T ss_pred ChHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 78999999999999999 55444 457899999988763 3588888875
No 46
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.68 E-value=0.0098 Score=42.27 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=37.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.++..+ .-.|.+.+.|.
T Consensus 53 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 101 (108)
T 1q7x_A 53 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKG 101 (108)
T ss_dssp STHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHT-TSEEEEEEECC
T ss_pred ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence 7899999999999999942 334455688888888765 56788888764
No 47
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=95.65 E-value=0.0098 Score=41.05 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=34.8
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+ .++|+..+|+.+ .=.|.+.+.|.
T Consensus 38 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~ 85 (91)
T 2vsp_A 38 GPADLAG-LEDEDVIIE--VNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGK 85 (91)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC-
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence 7888888 999999999 655544 688999988876 55677777653
No 48
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.62 E-value=0.011 Score=43.48 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=37.1
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccc-cceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYAS-PYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~-PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |....+ ..+|++.+|+.+. --.|.+.+.|.
T Consensus 55 spA~~aG~L~~GD~Il~--Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 105 (123)
T 1ueq_A 55 GPAAQDGKMETGDVIVY--INEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105 (123)
T ss_dssp SHHHHTSCCCTTCEEEE--ETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred CHHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 78899999999999999 555444 5889999998765 34688888765
No 49
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=95.59 E-value=0.0097 Score=43.22 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=36.2
Q ss_pred CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+.|++||+|++ |....+. .+|+..+|+.+ +=.|.+.+.+
T Consensus 47 spA~~aG~L~~GD~Il~--ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~ 94 (97)
T 2ejy_A 47 GMIHRQGSLHVGDEILE--INGTNVTNHSVDQLQKAMKET-KGMISLKVIP 94 (97)
T ss_dssp SHHHHHTCCCTTCEEEE--ETTBCCCSSCSHHHHHHHHHC-CEEEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 78999999999999999 7777666 79999999865 3467776654
No 50
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=95.59 E-value=0.01 Score=43.57 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=37.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc-ceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP-YEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P-Ykv~~~l~reI 51 (199)
|||++.+.|++||+|+++- ..++++.++|+.++|+.+.| -.|.+.+.|.-
T Consensus 56 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 107 (122)
T 1v5q_A 56 SPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV 107 (122)
T ss_dssp SHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECC
Confidence 7888888899999999932 23344557999999988763 46888887753
No 51
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.59 E-value=0.0073 Score=42.22 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=34.5
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+++ ...-.|.+.+.|.
T Consensus 47 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 95 (103)
T 1wfv_A 47 GPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK-SGGRRVRLLLKRG 95 (103)
T ss_dssp SHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH-HHCSEECEEEECT
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEEC
Confidence 7888888899999999942 2334455688888887 3345677777653
No 52
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=95.57 E-value=0.013 Score=40.56 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=34.7
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |... ++..++++.+++.+ .-.|.+.+.|.
T Consensus 40 spA~~aG~L~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 88 (95)
T 2vwr_A 40 GLAAQDGRLSSNDRVLA--INGHDLKYGTPELAAQIIQAS-GERVNLTIARP 88 (95)
T ss_dssp SHHHHHCCCCTTCEEEE--ETTEECTTCCHHHHHHHHHHC-CSEEEEEEEEE
T ss_pred ChHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEcC
Confidence 78999999999999999 5444 44567787777644 46778887764
No 53
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=95.56 E-value=0.01 Score=42.28 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=37.1
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++..-|++||+|+++. ...+++.+++++.+|+.+.. .|.+++.+.-
T Consensus 46 s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 95 (103)
T 2dc2_A 46 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG-EIEFEVVYVA 95 (103)
T ss_dssp SHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCS-EEEEEEEECC
T ss_pred CHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-cEEEEEEecC
Confidence 6777777899999999942 24455678999999987654 8888887643
No 54
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=95.56 E-value=0.01 Score=43.75 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=36.2
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ....++..++++.+|+.+.. .|.+.+.|.
T Consensus 64 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~ 112 (117)
T 2fne_A 64 GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG-TVTLMVLSS 112 (117)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-SEEEEEEEC
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEeC
Confidence 7899999999999999932 23344468899998876543 588888764
No 55
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=95.54 E-value=0.014 Score=39.81 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=33.9
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++ -..++++..+|++.+++.+ .-.|.+.+.|.
T Consensus 38 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 85 (88)
T 2uzc_A 38 GKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRE 85 (88)
T ss_dssp SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECC
T ss_pred ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeC
Confidence 7888888 9999999993 1234455567888888765 45677777663
No 56
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.53 E-value=0.013 Score=41.66 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=36.5
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |...++ ..++++.++..+ .-.|.+.+.|.
T Consensus 47 spA~~aG~L~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 95 (110)
T 1um1_A 47 SPAAADGRLSLGDRILE--VNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKS 95 (110)
T ss_dssp SHHHHHSCCCTTCEEEE--ESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECC
T ss_pred ChHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence 78999999999999999 655544 578888888765 56788888875
No 57
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=95.53 E-value=0.012 Score=43.01 Aligned_cols=48 Identities=23% Similarity=0.197 Sum_probs=37.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ....++..+++..+|+.+ +=.|.+.++|.
T Consensus 56 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~ 104 (125)
T 3hpk_A 56 TPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNKL 104 (125)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 7899999999999999942 334555689999998874 34688888873
No 58
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=95.51 E-value=0.012 Score=40.18 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=34.4
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++ -...+++.++|+..+|+.+. -.|.+.+.|.
T Consensus 37 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~ 84 (87)
T 2pa1_A 37 GKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRI 84 (87)
T ss_dssp SHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEEC
T ss_pred ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEec
Confidence 6777765 9999999993 12344455689999998775 6788887764
No 59
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=95.47 E-value=0.01 Score=42.54 Aligned_cols=45 Identities=22% Similarity=0.115 Sum_probs=36.5
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEe
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETE 48 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~ 48 (199)
|||++.+ |++||+|+++- ++..++..+++..+|+ .+.=.|.+.+.
T Consensus 34 spA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~ 79 (82)
T 1r6j_A 34 SSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIM 79 (82)
T ss_dssp SHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEE
T ss_pred CHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEE
Confidence 7899998 88999999942 4566778899999999 66667887764
No 60
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=95.45 E-value=0.013 Score=40.77 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=35.2
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ....++.++|+..+|+. ..-.|.+.+.|.
T Consensus 48 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 96 (98)
T 1ihj_A 48 SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQTF 96 (98)
T ss_dssp SHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeC
Confidence 7888888899999999932 23344445888888876 456788888764
No 61
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=95.45 E-value=0.014 Score=41.67 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=36.0
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |....+ ..+|++.+|+.+ .-.|.+.+.|.
T Consensus 49 spA~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~ 97 (111)
T 2dlu_A 49 GLADRDGRLQTGDHILK--IGGTNVQGMTSEQVAQVLRNC-GNSVRMLVARD 97 (111)
T ss_dssp SSHHHHTCCCSSCEEEE--ESSCCCTTSCHHHHHHHHHHH-CSEEEEEEEES
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeC
Confidence 78888888999999999 665554 468888888764 45688888764
No 62
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=95.41 E-value=0.0091 Score=43.26 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=36.1
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++.+++++.+|+.+..-.+.+.+.|.
T Consensus 53 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~ 102 (119)
T 1x6d_A 53 GLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRK 102 (119)
T ss_dssp SHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEEC
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 7899999999999999932 233445689999999776555555666653
No 63
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.39 E-value=0.0048 Score=44.22 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=35.6
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |...++ .+++++.+|+. ..-.|.+.+.|.
T Consensus 55 spA~~aG~L~~GD~Il~--vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~ 103 (111)
T 1uju_A 55 GAAGRDGRLRVGLRLLE--VNQQSLLGLTHGEAVQLLRS-VGDTLTVLVCDG 103 (111)
T ss_dssp SHHHHHSSCCTTCBCCB--BSSCBCTTSCHHHHHHHHSS-CSSEEEECCCCC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 78899999999999999 655544 58999998876 345677776654
No 64
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=95.36 E-value=0.0098 Score=42.15 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=34.9
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ..++++..+|++.+|.. ..-.|.+.+.|.
T Consensus 55 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 103 (108)
T 2jre_A 55 SAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLLLIRR 103 (108)
T ss_dssp SHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-HCSEEEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 7888999999999999931 22334446888888876 345677777664
No 65
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=95.34 E-value=0.015 Score=42.99 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=36.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++..-|++||+|+++- ..++++..++++.+|+.+ +-.|.+.+.|.
T Consensus 64 spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~ 112 (120)
T 2iwo_A 64 GVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVAG 112 (120)
T ss_dssp SHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEECC
T ss_pred CHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 6888888999999999942 344556679999988876 34588888764
No 66
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.30 E-value=0.013 Score=40.16 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=34.4
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |... ++..++++.+|+.+. -.|.+.+.|.
T Consensus 41 spA~~aGgl~~GD~I~~--vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~ 89 (93)
T 2dkr_A 41 GVADRHGGLKRGDQLLS--VNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSG 89 (93)
T ss_dssp SHHHHHCCCCTTCBEEE--ETTEECTTSCHHHHHHHHHHCC-SEEEEEECCC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCC-CcEEEEEEeC
Confidence 67888878999999999 5444 445788888887654 3688887763
No 67
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.25 E-value=0.014 Score=42.66 Aligned_cols=46 Identities=28% Similarity=0.249 Sum_probs=36.8
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |... ++..+|++.+|+. ..=.|.+.+.|.
T Consensus 53 spA~~aG~l~~GD~Il~--Ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~ 101 (117)
T 1v62_A 53 SVVDRSGALHPGDHILS--IDGTSMEHCSLLEATKLLAS-ISEKVRLEILPV 101 (117)
T ss_dssp SHHHHHTCCCTTCBEEE--ETTEETTSCCHHHHHHHHHS-CSSEEEEEECCB
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHh-CCCeEEEEEEEC
Confidence 78899999999999999 5444 4568999999984 456788888764
No 68
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=95.25 E-value=0.017 Score=39.30 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=33.9
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEe
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETE 48 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~ 48 (199)
|||+++.-|++||+|+++- ...+++..++++.+|+.+. =.|.+.++
T Consensus 39 spA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~ 85 (87)
T 4e34_A 39 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVV 85 (87)
T ss_dssp SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEE
T ss_pred CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEE
Confidence 6888878999999999941 3445567889988887543 35777665
No 69
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=95.25 E-value=0.016 Score=40.65 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=34.8
Q ss_pred CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |.... +..+++..++..+.- .|.+.+.|.
T Consensus 42 spA~~aG~L~~GD~I~~--Ing~~v~~~~~~~~~~~~~~~~~-~v~l~v~R~ 90 (96)
T 2qkv_A 42 QYPEIDSKLQRGDIITK--FNGDALEGLPFQVSYALFKGANG-KVSMEVTRP 90 (96)
T ss_dssp SCHHHHHHCCTTCEEEE--ETTEECTTCCHHHHHHHHHTCSS-EEEEEEECC
T ss_pred ChHHhcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHhcCCC-cEEEEEEeC
Confidence 78999999999999999 55444 456777777776543 588888764
No 70
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=95.24 E-value=0.019 Score=39.28 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=33.1
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |... ++.+++++.+++.+ .-.|.+.+.|.
T Consensus 38 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 85 (89)
T 2q3g_A 38 GKAAQAG-VAVGDWVLS--IDGENAGSLTHIEAQNKIRAC-GERLSLGLSRA 85 (89)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEE
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeC
Confidence 6888887 999999999 5443 44567888877655 44678887764
No 71
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.17 E-value=0.02 Score=40.68 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.9
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+-|++||+|+++- ...+++.+++++.+|+.+ .-.|.+.+.|.
T Consensus 52 spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 100 (107)
T 1uhp_A 52 GPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA-KEPIVVQVLRR 100 (107)
T ss_dssp SHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEEC
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEeC
Confidence 6788887899999999953 445566788998888764 34677777654
No 72
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=95.16 E-value=0.013 Score=41.96 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=35.7
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |... ++..++++.++..+ .-.|.+.+.|.
T Consensus 46 s~A~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 94 (113)
T 2g5m_B 46 GAAHRDGRIQVNDLLVE--VDGTSLVGVTQSFAASVLRNT-KGRVRFMIGRE 94 (113)
T ss_dssp SHHHHHTCSCTTCBEEE--ETTEECSSCCHHHHHHHHHHS-CSSCEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHhcC-CCeEEEEEEeC
Confidence 78999999999999999 5544 44578888888765 45678887764
No 73
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=95.15 E-value=0.022 Score=38.46 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=33.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++- ...+++..+|++.+|+.+. -.|.+.+.|.
T Consensus 34 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~ 81 (83)
T 2kv8_A 34 SPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCS-GVLHMVIAEG 81 (83)
T ss_dssp STTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS-SCEEEEEECC
T ss_pred ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEcC
Confidence 7888888 99999999931 2334455588888886553 3488888775
No 74
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=95.14 E-value=0.021 Score=40.56 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=34.9
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccc-cceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYAS-PYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~-PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |... ++..+|++.+|+.+. --.|.+.+.|.
T Consensus 50 spA~~aG~l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 100 (111)
T 2koj_A 50 GAAIQDGRLKAGDRLIE--VNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100 (111)
T ss_dssp SHHHHHCSSCTTCEEEE--ETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEEC
T ss_pred ChHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 78888888999999999 5444 344689999998753 23577777654
No 75
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=95.14 E-value=0.017 Score=40.30 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=33.7
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|++ |... ++.++|+..+|+.+ +=.|.+.+.+
T Consensus 48 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~ 94 (96)
T 2ego_A 48 SPAQLAG-LTPGDTIAS--VNGLNVEGIRHREIVDIIKAS-GNVLRLETLY 94 (96)
T ss_dssp CHHHHTT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHHT-TTEEEEEEEC
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence 7888888 999999999 5544 44458999988876 4478777754
No 76
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=95.09 E-value=0.028 Score=42.88 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=39.9
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++.+.|++||+|++ |....+ .++|+..+|+...| =.|.+.+.|.
T Consensus 60 spA~~aG~L~~GD~Il~--VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 60 GAAASDGILQPGDVLIS--VGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp SSGGGCSSSCTTCBEEE--ESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred CHHHHcCCCCCCCEEEE--ECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 78999999999999999 788877 58999999987554 4688888886
No 77
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=95.07 E-value=0.024 Score=41.12 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=35.0
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |....+ ..+++..++..+. =.|.+.+.|.
T Consensus 36 spA~~aG~L~~GD~Il~--Ing~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~ 84 (106)
T 2la8_A 36 QYPEIDSKLQRGDIITK--FNGDALEGLPFQVCYALFKGAN-GKVSMEVTRP 84 (106)
T ss_dssp SCHHHHTTCCTTCEEEE--ESSCBCSSSCHHHHHHHHHSCB-SCEEEEEEEC
T ss_pred CHHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHhCCC-CeEEEEEEeC
Confidence 78999999999999999 665554 5677777776654 3588888763
No 78
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=95.06 E-value=0.02 Score=41.90 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=35.9
Q ss_pred CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |.... +..++++.+|+.+. -.|.+.+.|.
T Consensus 62 spA~~aG~L~~GD~Il~--Ing~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~ 110 (124)
T 2daz_A 62 GPAAADGRMRIGDELLE--INNQILYGRSHQNASAIIKTAP-SKVKLVFIRN 110 (124)
T ss_dssp SHHHHHTCCCTTCEECE--ESSCBCTTSCHHHHHHHHHHSC-SEEEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeC
Confidence 78899999999999999 66544 44678888887653 4889988775
No 79
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=95.04 E-value=0.022 Score=39.03 Aligned_cols=47 Identities=28% Similarity=0.234 Sum_probs=34.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++..-|++||+|+++- ..++++..++++.++..+ +=.|.+.++|
T Consensus 41 spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~r 88 (90)
T 1qav_A 41 LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKY 88 (90)
T ss_dssp SHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence 6788887899999999932 234445678888888765 3457777765
No 80
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=95.04 E-value=0.021 Score=39.44 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=34.2
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++.+ |++||+|++ |....+ .++|++.+|+.+ +-.|.+.+.|..
T Consensus 35 spA~~aG-l~~GD~I~~--vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 83 (91)
T 2f5y_A 35 GPAERAG-LQQLDTVLQ--LNERPVEHWKCVELAHEIRSC-PSEIILLVWRMV 83 (91)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTC-SSEEEEEEEECC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 7888888 999999999 555444 467888888763 336888887753
No 81
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=95.01 E-value=0.018 Score=39.99 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=34.5
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |... ++..+|+..+|+.+ .-.|.+.+.|.
T Consensus 41 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~ 88 (96)
T 2v90_A 41 LPAKKAG-MQAGDRLVA--VAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDP 88 (96)
T ss_dssp SHHHHTT-CCTTEEEEE--ETTEECTTCCHHHHHHHHHTT-TTEEEEEEECC
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEECC
Confidence 7888888 999999999 5544 44468888888875 56777877764
No 82
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=94.99 E-value=0.02 Score=39.27 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=34.6
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++ -....++..+|+..+|+.+ .-.|.+.+.|.
T Consensus 39 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~ 86 (90)
T 2he4_A 39 SPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGP 86 (90)
T ss_dssp SHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECC
T ss_pred ChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEcc
Confidence 6888888 9999999993 1234445558889988876 56777777764
No 83
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=94.96 E-value=0.019 Score=43.64 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=35.6
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+ ..+|+..+|+...--.|.+.+.|.
T Consensus 75 spA~~aG-L~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 123 (139)
T 2vz5_A 75 GPAEIAG-LQIGDKIMQ--VNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123 (139)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHCCTTCSEEEEEEEEC
T ss_pred CHHHHCC-CCCCCEEEE--ECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEEC
Confidence 7888888 999999999 655444 478999999873336688888764
No 84
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=94.95 E-value=0.021 Score=41.99 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=35.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccc-cceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYAS-PYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~-PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..+|++.+|+.+. --.|.+.+.|.
T Consensus 69 spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 119 (121)
T 2kom_A 69 GAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119 (121)
T ss_dssp SHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEEC
T ss_pred ChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeC
Confidence 7888888899999999932 2334444689999998753 24677777663
No 85
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=94.93 E-value=0.024 Score=40.33 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=36.3
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++.++|+..+|+...--.|.+.+.|.
T Consensus 37 spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 86 (112)
T 1qau_A 37 GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG 86 (112)
T ss_dssp SHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEEC
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeC
Confidence 7888888889999999932 234455578999999875335777887764
No 86
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=94.87 E-value=0.038 Score=38.21 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=33.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++ -|++||+|+++- ..++++..++++.++.. ..-.|.+.+.|.
T Consensus 46 spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 92 (95)
T 1mfg_A 46 GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQNTVELIIVRE 92 (95)
T ss_dssp STTTT--TCCTTCEEEEETTEECTTCBHHHHHHHHHH-CCSEEEEEEEEE
T ss_pred Cchhh--CCCCCCEEEEECCEEcCCCCHHHHHHHhhc-CCCeEEEEEEeC
Confidence 67887 899999999943 34445557788888774 345688888775
No 87
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=94.73 E-value=0.023 Score=39.61 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=33.9
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|++ |... ++.++|+..+|. ...-.|.+.+.|
T Consensus 45 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r 91 (99)
T 3khf_A 45 SPAQEAG-LRAGDLITH--INGESVLGLVHMDVVELLL-KSGNKISLRTTA 91 (99)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHH-HSCSEEEEEEEC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHh-cCCCEEEEEEEE
Confidence 7888888 999999999 5544 445888888888 344678888776
No 88
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=94.71 E-value=0.037 Score=37.96 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=33.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++- ...+++..+|+..+|+. ..-.|.+.+.|.
T Consensus 38 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 85 (91)
T 2pkt_A 38 SKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARS 85 (91)
T ss_dssp SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEE
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 6888877 99999999932 23344555678888877 556778888764
No 89
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=94.70 E-value=0.027 Score=39.77 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=35.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++- ..+.++.++|+..+|+. ..=.|.|.+.|.
T Consensus 54 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~ 101 (107)
T 3qe1_A 54 GAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRA-GEKELILTVLSV 101 (107)
T ss_dssp SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHH-CSSEEEEEEECS
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcC
Confidence 7888888 99999999941 24455677889888885 355678877763
No 90
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=94.66 E-value=0.029 Score=40.52 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=34.3
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+++.+ .-.|.+.+.|.
T Consensus 60 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~ 108 (112)
T 2r4h_A 60 GPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNG-GRRVRLFLKRG 108 (112)
T ss_dssp SHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECC
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence 7888888899999999931 233344567888888753 44678887663
No 91
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.62 E-value=0.026 Score=40.79 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=34.7
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |... ++..+|++.+|.... =.|.+.+.|.
T Consensus 59 spA~~aGll~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~ 107 (113)
T 1va8_A 59 GAAEKSGLLHEGDEVLE--INGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPS 107 (113)
T ss_dssp SHHHHHTCCCTTCEEEE--ETTEECTTCCHHHHHHHHHHCC-EEEEEEEECC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEC
Confidence 78888888899999999 5544 445889999987544 3677777653
No 92
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.61 E-value=0.039 Score=39.67 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=35.1
Q ss_pred CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||+++.-|++||+|++ |....+. ++|+..+|+. ..-.|.+.+.|.
T Consensus 54 spA~~~agL~~GD~I~~--ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~ 102 (114)
T 1uew_A 54 SPADRCAKLKVGDRILA--VNGQSIINMPHADIVKLIKD-AGLSVTLRIIPQ 102 (114)
T ss_dssp CTTGGGSSCCTTCBEEE--ETTBCTTTSCHHHHHHHHHH-TTTEEEEEECCC
T ss_pred ChHHHhCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 67877678999999999 6655444 4899999986 556778877753
No 93
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=94.55 E-value=0.033 Score=38.86 Aligned_cols=48 Identities=27% Similarity=0.282 Sum_probs=34.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ....++..++++.++..+ .=.|.+.+.|.
T Consensus 46 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~ 94 (104)
T 3i4w_A 46 GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYK 94 (104)
T ss_dssp SHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEEC
T ss_pred ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 7899999999999999942 234445667777777653 34678887764
No 94
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=94.46 E-value=0.032 Score=43.07 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=36.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..+++..+|+.+ +=.|.+.+.|.
T Consensus 147 s~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~V~R~ 195 (206)
T 3r0h_A 147 QYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEVTRP 195 (206)
T ss_dssp SCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence 7888888999999999942 233444567888999765 34788888874
No 95
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.44 E-value=0.032 Score=39.40 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=33.4
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+ ..+|++.+|+... =.|.+.+.|.
T Consensus 47 spA~~aG-L~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~ 94 (100)
T 1whd_A 47 GPAERAG-LQQLDTVLQ--LNERPVEHWKCVELAHEIRSCP-SEIILLVWRV 94 (100)
T ss_dssp SHHHHHT-CCSSCEEEE--ETTEECTTCCHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEC
Confidence 6788876 999999999 554444 4688888887643 3488888775
No 96
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.42 E-value=0.058 Score=39.55 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=31.6
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|++ |....+ ..++++.+++-.. .|.+.+.|
T Consensus 57 spA~~aG-L~~GD~I~~--vng~~v~~~~~~~~~~~~~~~~--~v~l~v~R 102 (128)
T 1uf1_A 57 SEAEGSG-LKVGDQILE--VNGRSFLNILHDEAVRLLKSSR--HLILTVKD 102 (128)
T ss_dssp CHHHHHT-CCTTCEEEE--ETTEECSSCCHHHHHHHHTTCS--EEEEEEEC
T ss_pred CHHHHCC-CCCCCEEEE--ECCEECCCCCHHHHHHHHhcCC--eEEEEEEE
Confidence 6788777 999999999 554443 3477888887765 56677765
No 97
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=94.41 E-value=0.021 Score=39.75 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=33.9
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |... ++..+|+..+|+.+.--.+.+.+.|.
T Consensus 44 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~ 92 (98)
T 2jxo_A 44 SPAEASG-LRAQDRIVE--VNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRE 92 (98)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTTTTEEEEEECCHH
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCcEEEEEEECC
Confidence 7888888 999999999 5544 34468899999887444555776653
No 98
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=94.39 E-value=0.053 Score=38.98 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=34.8
Q ss_pred CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++.+ |++||+|++ |....+. .+|++.+|+.. .-.|.+.+.|.-
T Consensus 49 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~ 97 (114)
T 2edz_A 49 SPAEKAG-LLDGDRVLR--INGVFVDKEEHAQVVELVRKS-GNSVTLLVLDGD 97 (114)
T ss_dssp CTTGGGT-CCTTCEEEE--ESSSBCSSSCHHHHHHHHHHT-CSEEEEEEECHH
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECC
Confidence 7888888 999999999 6655443 47888888754 567888887753
No 99
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=94.37 E-value=0.043 Score=37.52 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=32.2
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|+++ -..++++..++++.+|+.+.--.+.+.++|
T Consensus 38 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r 85 (91)
T 1g9o_A 38 SPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 85 (91)
T ss_dssp SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred CHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcC
Confidence 7888888 9999999993 123455557888888887643333444443
No 100
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.36 E-value=0.026 Score=39.47 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=35.5
Q ss_pred CccccccccCCCCeeeEEEEeeccc--chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM--VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~--~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++...|++||+|++ |....+ ..+|+..+|+.+ .=.|.+.+.|.
T Consensus 40 spA~~ag~L~~GD~I~~--ing~~v~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 40 GMVAQQGLLHVGDIIKE--VNGQPVGSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp SHHHHHCCCCTTCEEEE--ETTEECTTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 78888889999999999 655554 778899999764 33677777654
No 101
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=94.33 E-value=0.037 Score=41.16 Aligned_cols=48 Identities=31% Similarity=0.427 Sum_probs=34.1
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++.+ |++||+|+++ -....++..+|++.+|....| =.|.+.+.|.
T Consensus 62 spA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 111 (124)
T 3tsv_A 62 SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 111 (124)
T ss_dssp CHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 7888888 9999999994 233444555888887775444 3577777664
No 102
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=94.33 E-value=0.029 Score=41.51 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=36.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..+|++.+|+.+. =.|.+.+.|.
T Consensus 76 spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~ 124 (128)
T 1nf3_C 76 GLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS-RNLIITVRPA 124 (128)
T ss_dssp CHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTT-TSEEEEEECC
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEC
Confidence 7899999999999999931 2344557899999997544 3688888764
No 103
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=94.32 E-value=0.059 Score=40.43 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=33.8
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|++ |... ++..++++.+|+. ..=.|.+.+.+
T Consensus 76 spA~~aG-L~~GD~Il~--Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~ 122 (132)
T 3l4f_D 76 GVAWRAG-LRMGDFLIE--VNGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVM 122 (132)
T ss_dssp SGGGGGT-CCTTCEEEE--ESSSBCTTSCHHHHHHHHHH-TTTEEEEEEEC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCEEEEEEEE
Confidence 7899999 999999999 6544 4457899888876 34467777754
No 104
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.31 E-value=0.036 Score=38.49 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=32.4
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |... ++.++|+..+|+... =.|.+.+.|.
T Consensus 41 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~ 88 (94)
T 1vb7_A 41 GKAEAAD-LRPGDIIVA--INGQSAENMLHAEAQSKIRQSA-SPLRLQLDRS 88 (94)
T ss_dssp SSHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTCC-SSEEEEEECC
T ss_pred CHHHHCC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhCC-CcEEEEEEEC
Confidence 6777655 999999999 5444 444588888888764 5677777764
No 105
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=94.29 E-value=0.052 Score=38.14 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=33.6
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++ -|++||+|+++- ...+++..++++.+++. ..-.|.+.+.|..
T Consensus 54 spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 54 GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQNTVELIIVREV 101 (103)
T ss_dssp STTSS--SCCTTCEEEEETTEECSSCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CchHH--CCCCCCEEEEECCEECCCCCHHHHHHHhhc-CCCeEEEEEEecC
Confidence 67887 899999999932 23344556788888874 3567888888754
No 106
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=94.28 E-value=0.041 Score=37.82 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=33.9
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|+++- ....++..+|+..+|+. .+-.+.+.+.|
T Consensus 40 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~~~r 86 (95)
T 3r68_A 40 SPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLD 86 (95)
T ss_dssp SHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEE
T ss_pred CHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEC
Confidence 7888888 99999999942 23455566888888887 56666666544
No 107
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=94.25 E-value=0.028 Score=41.17 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=34.8
Q ss_pred CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |.... ...+|++.+|+.+. -.|.+.+++.
T Consensus 61 spA~~aG~L~~GD~I~~--Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~ 109 (114)
T 2gzv_A 61 TPAALDGTVAAGDEITG--VNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNKL 109 (114)
T ss_dssp SHHHHHCCCCTTCEEEE--ETTEECTTCCHHHHHHHHHHCC-SEEEEEEECC
T ss_pred ChHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcCC-CeEEEEEEec
Confidence 78999999999999999 55443 46788888887543 4577877643
No 108
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.21 E-value=0.037 Score=39.13 Aligned_cols=45 Identities=27% Similarity=0.320 Sum_probs=33.8
Q ss_pred CccccccccCCCCeeeEEEEee---cccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISF---RHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F---~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |.. +++.++|+..+|+.+ .-.|.+.+.|.
T Consensus 40 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~ 87 (103)
T 1v5l_A 40 SKAAAAN-LCPGDVILA--IDGFGTESMTHADAQDRIKAA-SYQLCLKIDRA 87 (103)
T ss_dssp STTGGGT-CCTTCBEEE--ETTEECSSCCHHHHHHHHTTC-CSEEECEECCC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence 6777766 999999999 544 344468889888876 56677777764
No 109
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.07 E-value=0.044 Score=38.04 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=31.2
Q ss_pred CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |.... +.+++++.++.. ..-.|.+.+.|.
T Consensus 43 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 90 (94)
T 2eeg_A 43 SKAALAA-LCPGDLIQA--INGESTELMTHLEAQNRIKG-CHDHLTLSVSSG 90 (94)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEETTTCCHHHHHHHHHT-CCSCEEEEEECC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 6788877 999999999 55443 335777777765 334577777653
No 110
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.00 E-value=0.043 Score=38.85 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=32.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|+++- ..++++.++|++.+|+..++ |.+.++|
T Consensus 52 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--v~l~v~r 97 (104)
T 1wi2_A 52 SDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTARE--ISMRVRF 97 (104)
T ss_dssp SHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSSS--EEEEEEC
T ss_pred ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCE--EEEEEEE
Confidence 6788877 99999999942 23455567999999987554 5555554
No 111
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.00 E-value=0.038 Score=38.97 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=32.3
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |... ++..++++.++..+ .-.|.+.+.|.
T Consensus 40 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 87 (103)
T 1wf7_A 40 GKASQAH-VRIGDVVLS--IDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRA 87 (103)
T ss_dssp CHHHHTT-CCTTCBEEE--ETTEECSSCCHHHHHHHHHHC-SSEEEEEECCC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence 6888888 999999999 5443 34457777777654 44688888763
No 112
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=93.98 E-value=0.048 Score=36.70 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=31.5
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++. -|++||+|+++ -..++++.+++++.+++.+. -.|.+.+.|.
T Consensus 36 spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~ 83 (85)
T 1rgw_A 36 SKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-YNLSLTLQKS 83 (85)
T ss_dssp SHHHHS-SCCCCSBEEEETTEECTTCCHHHHHHHHTTCS-SCEEEEEESC
T ss_pred CHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHHcCC-CeEEEEEEeC
Confidence 677775 49999999993 12334445578887776543 3478887763
No 113
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=93.96 E-value=0.044 Score=38.74 Aligned_cols=43 Identities=26% Similarity=0.235 Sum_probs=33.0
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEe
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETE 48 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~ 48 (199)
|||++.+ |++||+|++ |....+ ..+|+..+|+.+ .-.|.+.+.
T Consensus 42 spA~~aG-L~~GD~Il~--Ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~ 87 (90)
T 1y7n_A 42 GIAERGG-VRVGHRIIE--INGQSVVATPHEKIVHILSNA-VGEIHMKTM 87 (90)
T ss_dssp SHHHHHT-CCSSCEEEE--ETTEECTTSCHHHHHHHHHHC-CEEEEEEEE
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEE
Confidence 7888888 999999999 766665 578899988744 445666554
No 114
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=93.93 E-value=0.053 Score=38.17 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=34.8
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++- ....++..+|+..+|+. ..-.|.+.+.|.
T Consensus 37 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~ 84 (106)
T 3ngh_A 37 SPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLLVLDG 84 (106)
T ss_dssp SHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHH-TTTEEEEEEECH
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEEEEEEEC
Confidence 7888888 99999999942 23455566788888873 455788888764
No 115
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=93.93 E-value=0.052 Score=41.90 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=36.6
Q ss_pred CccccccccCCCCeeeEEE-Eeecc--cchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRH--MVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n--~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|+.||+|+++- ...++ +..++++.+|.....-.|.+.+.|.
T Consensus 56 spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~ 107 (206)
T 3r0h_A 56 GQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRA 107 (206)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECC
T ss_pred ChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEec
Confidence 7899999999999999941 34455 6677888888765554488888754
No 116
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=93.89 E-value=0.06 Score=38.25 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=32.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++- ...+++...+++..+.. ..-.|.+.+.|.
T Consensus 57 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 104 (110)
T 1x5q_A 57 GPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVWRE 104 (110)
T ss_dssp SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEEEC
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeEEEEEEEC
Confidence 6888887 99999999942 33444445566655554 456788887764
No 117
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=93.87 E-value=0.036 Score=40.51 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=36.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ....++.++|+..+|+...--.|.+.+.|.
T Consensus 44 spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 93 (127)
T 1b8q_A 44 GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG 93 (127)
T ss_dssp SSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeC
Confidence 7888888889999999931 233445569999999875435678887763
No 118
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.85 E-value=0.027 Score=41.43 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=33.7
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|++ |...++ ..+|+..+|+.+ .=.|.+.+.|
T Consensus 72 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r 118 (126)
T 2yuy_A 72 GPAFEAG-LCTGDRIIK--VNGESVIGKTYSQVIALIQNS-DTTLELSVMP 118 (126)
T ss_dssp SHHHHHT-CCSSCCCCE--ETTEECSSCCHHHHHHHHHTC-TTEEEEECCC
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEE
Confidence 6888888 999999999 555444 789999999864 4566676665
No 119
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=93.75 E-value=0.07 Score=36.43 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=31.2
Q ss_pred CccccccccCCCCeeeEEEEee---cccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISF---RHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F---~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |.. +++..++++.++..+ .=.|.+.+.|.
T Consensus 43 spA~~aG-l~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 90 (91)
T 1m5z_A 43 GPGDLGG-LKPYDRLLQ--VNHVRTRDFDCCLVVPLIAES-GNKLDLVISRN 90 (91)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTS-TTEEEEEEEEC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence 6888887 999999999 444 444455666666643 34677777663
No 120
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=93.74 E-value=0.11 Score=36.77 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=40.7
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccc-cceEEEEEeeehhhhhhhhhhhcccCcccccCCCCC
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYAS-PYEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWKS 75 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~-PYkv~~~l~reIyf~MVC~KCEKKL~KLaTPD~wK~ 75 (199)
|||++ + |++||+|++ |....+. .+|...+|+... --.|.+.+.|. .+.+.--++|..+.+
T Consensus 12 spA~~-G-L~~GD~I~~--InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~----------g~~~~~~v~~~~~~~ 73 (91)
T 2kjp_A 12 MPAKG-K-IEVGDKIIS--ADGKNYQSAEKLIDYISSKKAGDKVTLKIERE----------EKEKRVTLTLKQFPD 73 (91)
T ss_dssp SCCSS-C-CCSSCEEEE--ETTBCCSSHHHHHHHHSSCCSSCEECEEEESS----------SCEECCCEECCCCTT
T ss_pred ChHHH-c-CCCCCEEEE--ECCEECCCHHHHHHHHHcCCCCCEEEEEEEEC----------CEEEEEEEEEeccCC
Confidence 78888 5 999999998 5555443 456677777663 34688888774 234444577776654
No 121
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=93.64 E-value=0.08 Score=37.41 Aligned_cols=46 Identities=28% Similarity=0.253 Sum_probs=33.6
Q ss_pred CccccccccCCCCeeeEEEEee---cccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISF---RHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F---~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |.. .++..++++.++..+ .-.|.+.+.|.
T Consensus 50 s~A~~aG~L~~GD~Il~--Vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~ 98 (113)
T 1um7_A 50 GPADLSGELRRGDRILS--VNGVNLRNATHEQAAAALKRA-GQSVTIVAQYR 98 (113)
T ss_dssp SHHHHTTCCCTTCEEEE--ESSCBCTTCCHHHHHHHHHSC-CSEEEEEEECC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCcEEEEEEEC
Confidence 68888888999999999 544 444457787777643 45677777653
No 122
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=93.63 E-value=0.047 Score=39.92 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=35.0
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhcccc---ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASP---YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~P---Ykv~~~l~re 50 (199)
|||++.+-|++||+|++ |... ++..++|..+|+.+.+ =.|.+.+.|.
T Consensus 54 spA~~aggL~~GD~Il~--Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 54 GAAERHGGVVKGDEIMA--INGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp SHHHHHCSSCTTCEEEE--ESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 68888889999999999 6554 4457899999887632 3577777663
No 123
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=93.63 E-value=0.052 Score=39.20 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=37.0
Q ss_pred Cccccc-cccCCCCeeeEEEEeecc---cchhhHHhhhhcccc---ceEEEEEeeehh
Q psy11904 2 SHCAET-WALNNGDRITSVRISFRH---MVYEDALTILSYASP---YEVQIETEKEIY 52 (199)
Q Consensus 2 s~a~~~-~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~P---Ykv~~~l~reIy 52 (199)
|||++. .-|++||+|++ |...+ +.+++++.+++.+.. -.|.+.+.|.-+
T Consensus 52 spA~~a~gGL~~GD~Il~--ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 107 (119)
T 2cs5_A 52 TPADLCVPRLNEGDQVVL--INGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV 107 (119)
T ss_dssp STTTSSSSCCCTTCEEEE--ETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred CHHHHhhcCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence 688888 59999999999 65544 456888888877642 578888887643
No 124
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=93.53 E-value=0.09 Score=36.84 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=32.4
Q ss_pred CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|++ |....+. ++|++.+|+.+ .=.|.+.+.|
T Consensus 41 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r 87 (102)
T 2d90_A 41 SPAEAAG-LKNNDLVVA--VNGKSVEALDHDGVVEMIRKG-GDQTTLLVLD 87 (102)
T ss_dssp STTTTTT-CCTTCEEEE--ESSCBCTTSCHHHHHHHHHHS-TTEEEEEECS
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEE
Confidence 6888887 999999999 6555444 57888888763 4467777754
No 125
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.48 E-value=0.076 Score=39.39 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=31.0
Q ss_pred CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|++ |....+. ++|+..+|+-. .+.+.++|
T Consensus 55 spA~~aG-L~~GD~Il~--Ing~~v~~~~~~~~~~~l~~~---~v~l~v~R 99 (114)
T 2d8i_A 55 GLASKKG-LKAGDEILE--INNRAADALNSSMLKDFLSQP---SLGLLVRT 99 (114)
T ss_dssp SSHHHHT-CCTTCCEEE--ESSCBGGGCCHHHHHHHHTSS---EEEEEEEE
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCcCHHHHHHHHhCC---cEEEEEEE
Confidence 6888888 999999999 6655554 46777777643 66776665
No 126
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.45 E-value=0.054 Score=38.22 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=33.6
Q ss_pred CccccccccCCCCeeeEEEEeecccc--hhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV--YEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~--yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++..-|++||+|++ |....+. +++++.+++.+ .-.|.+.+.|.
T Consensus 46 spA~~agGL~~GD~I~~--ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~ 93 (100)
T 2edp_A 46 GKAALSQKMRTGDELVN--INGTPLYGSRQEALILIKGS-FRILKLIVRRR 93 (100)
T ss_dssp SHHHHHTSCCTTCEEEE--ETTEECCSCSHHHHHHHHTC-CSSCEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEEccchHHHHHHHHHhC-CCeEEEEEEeC
Confidence 67888878999999998 5543332 57788888764 45677887764
No 127
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.44 E-value=0.052 Score=38.04 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=31.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|+++- ..++++.+++++.+|+-.++ |.+.+.|
T Consensus 47 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~--v~l~v~R 92 (100)
T 2eeh_A 47 SSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSSSR--LHMMVRR 92 (100)
T ss_dssp SHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHSCSS--EEEEEEE
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcCCCE--EEEEEEE
Confidence 6888888 99999999932 23344456889998887544 5555554
No 128
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=93.36 E-value=0.052 Score=39.82 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=34.2
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+ .++|+..+|+.+..-.|.+.+.+.
T Consensus 47 spA~~aG-L~~GD~Il~--InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~ 95 (111)
T 1vae_A 47 CSASLAG-AKEGDYIVS--IQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL 95 (111)
T ss_dssp SSHHHHH-CCTTCEEEE--ETTEECSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCceEEEEEEec
Confidence 6777765 999999999 665544 478889888876555577777654
No 129
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=93.35 E-value=0.098 Score=40.12 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=35.6
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++ -|++||+|+++- ...+++..++++.+|..+. ..|.+.+.|..
T Consensus 35 spA~~--gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~~ 82 (195)
T 2qbw_A 35 GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVREV 82 (195)
T ss_dssp STTTT--TCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEEEC
T ss_pred ChHHh--CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEcC
Confidence 78888 799999999941 2455566788888887664 49999998843
No 130
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=93.35 E-value=0.064 Score=42.12 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=34.9
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|+++ -....++.+++++.+|+- .=.|.+.+.|
T Consensus 121 spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r 166 (192)
T 3k1r_A 121 GQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRH 166 (192)
T ss_dssp SHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEE
T ss_pred ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEE
Confidence 7899998 9999999994 234455668999998877 5567777775
No 131
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=93.33 E-value=0.085 Score=37.49 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=32.5
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|+++- ....++..+|++.+|+.+ .-.|.+.+.+
T Consensus 56 spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~~ 102 (109)
T 1q3o_A 56 GVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVM 102 (109)
T ss_dssp SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEE
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEE
Confidence 6788887 99999999942 234455567888888765 3357776654
No 132
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=93.28 E-value=0.09 Score=39.22 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=31.4
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP 40 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P 40 (199)
|+|++.+.|++||+|+++- ++..+...+++.++|+....
T Consensus 39 g~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~ 78 (95)
T 3gge_A 39 GVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK 78 (95)
T ss_dssp SHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred ChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCC
Confidence 6899999999999999943 34555678899999987543
No 133
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=92.98 E-value=0.07 Score=36.39 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=31.7
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccc-cceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYAS-PYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~-PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+ ..+|...+|+... -=.|.+.+.|.
T Consensus 39 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 88 (90)
T 2eaq_A 39 SPAEFSQ-LQVDDEIIA--INNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRY 88 (90)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ChHHHcC-CCCCCEEEE--ECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeC
Confidence 6787776 999999999 555444 5677777777532 23566776653
No 134
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=92.96 E-value=0.094 Score=40.72 Aligned_cols=47 Identities=28% Similarity=0.282 Sum_probs=36.6
Q ss_pred CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++.+.|++||+|++ |....+. ++|+..+|+.+.| -.|.+.+.|.
T Consensus 47 spA~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 97 (196)
T 1p1d_A 47 SPAERCGVLQIGDRVMA--INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFD 97 (196)
T ss_dssp SHHHHTSCCCSSCCEEE--ETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence 78888888999999999 6665554 6888999987764 3677777653
No 135
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=92.91 E-value=0.095 Score=37.40 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=32.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++- ....++.+++++.+|+... .|.+.+.|.
T Consensus 52 s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~--~v~l~v~r~ 98 (114)
T 1x5n_A 52 SLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR--SLTISIVAA 98 (114)
T ss_dssp STTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS--SEEEEECSS
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC--eEEEEEEcC
Confidence 6788877 99999999942 2345556677888887665 566777654
No 136
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=92.83 E-value=0.053 Score=37.96 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=30.1
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|+++- ..+.++..++++..++-.. .|.+.+.|
T Consensus 46 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~~--~v~l~v~R 91 (101)
T 1uez_A 46 SLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSK--KLVLSVYS 91 (101)
T ss_dssp SHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSS--SCCEEECC
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCCC--eEEEEEEE
Confidence 6888887 99999999942 3344555566777766555 35555554
No 137
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=92.77 E-value=0.089 Score=38.53 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=34.2
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |....+. .+|+..+|+...--.|.+.+.|.
T Consensus 59 spA~~aG~l~~GD~I~~--ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~ 106 (124)
T 1wh1_A 59 SIAAKDGRIREGDRIIQ--INGIEVQNREEAVALLTSEENKNFSLLIARP 106 (124)
T ss_dssp SHHHHTCCCCTTCEEEE--ESSCBCCSHHHHHHHHTCSSCCSCCEEEEEC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEECCCHHHHHHHHHhCCCCEEEEEEEEC
Confidence 78888888999999999 6665553 46778888764334677777654
No 138
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=92.49 E-value=0.14 Score=35.47 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=30.5
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++- ...+++..++++..++- -=.|.+.+.|.
T Consensus 40 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~--g~~v~l~v~R~ 86 (93)
T 2dls_A 40 GAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKS--GAYVALTLLGS 86 (93)
T ss_dssp STTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTS--SSEEEEEEECC
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEEC
Confidence 6888887 99999999831 22344445677777763 34566666653
No 139
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=92.49 E-value=0.29 Score=34.43 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=38.8
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeeehhhhhhhhhhhcccCcccccCCCCC
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWKS 75 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~reIyf~MVC~KCEKKL~KLaTPD~wK~ 75 (199)
|||++ + |++||+|++ |....+. .+|...+|+...| -.|.+.+.|. .+.+.--++|..+.+
T Consensus 16 spA~~-G-L~~GD~Il~--InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~----------g~~~~~~v~~~~~~~ 77 (94)
T 2kl1_A 16 MPAAG-R-LEAGDRIAA--IDGQPINTSEQIVSYVREKQAGDRVRVTFIRD----------RKQHEAELVLKPFPH 77 (94)
T ss_dssp STTBT-T-BCTTCEEEE--ETTBCCCCHHHHHHHHHHSCTTCCEEEEEEET----------TEEEEEEECCCBCSS
T ss_pred ChHHh-C-CCCCCEEEE--ECCEECCCHHHHHHHHHhCCCCCEEEEEEEEC----------CEEEEEEEEEeeCCC
Confidence 68887 4 999999999 6555542 3566667766533 4678888774 233333467776654
No 140
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=92.29 E-value=0.14 Score=35.12 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=29.3
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |... ++...+++..+.. ..-.|.+.+.|.
T Consensus 45 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 92 (97)
T 2w4f_A 45 GPAARAG-VRVGDKLLE--VNGVALQGAEHHEAVEALRG-AGTAVQMRVWRE 92 (97)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHT-SCSEEEEEEECC
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCcCHHHHHHHHhC-CCCeEEEEEEeC
Confidence 6888877 999999999 5443 3333345444443 455677777764
No 141
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=92.22 E-value=0.13 Score=36.89 Aligned_cols=48 Identities=27% Similarity=0.282 Sum_probs=32.2
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ..++++..++++.++..+ .-.|.+.+.|.
T Consensus 49 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~ 97 (119)
T 1tp5_A 49 GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYK 97 (119)
T ss_dssp SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 7888888899999999932 233334455666666543 34677777764
No 142
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=92.19 E-value=0.1 Score=37.92 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=35.1
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|+++- ....++.++|+..+|+.+.--.+.+.+.|.
T Consensus 44 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~ 92 (128)
T 2kjd_A 44 SPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRE 92 (128)
T ss_dssp SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHH
T ss_pred ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeC
Confidence 6888888 99999999931 234455578899999877444566777764
No 143
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=92.16 E-value=0.068 Score=37.71 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=31.1
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEE
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIE 46 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~ 46 (199)
|||++.+ |++||+|+++- ..++++.++|+..+|+.. +-.|.+.
T Consensus 59 spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~ 102 (104)
T 2z17_A 59 SPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSS-GNLLTIE 102 (104)
T ss_dssp SHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHT-TTEEEEE
T ss_pred ChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCcEEEE
Confidence 6888888 99999999932 223444688999988876 4466554
No 144
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=92.10 E-value=0.2 Score=34.07 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=29.9
Q ss_pred CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccc-cceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYAS-PYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~-PYkv~~~l~re 50 (199)
|||+ .-|++||+|++ |.... +.++|+..+|+... --.|.+.+.|.
T Consensus 37 spA~--aGl~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 85 (88)
T 3bpu_A 37 SPRS--RGLKEGDLIVE--VNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ 85 (88)
T ss_dssp --CC--TTCCTTCEEEE--ETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEE
T ss_pred ChhH--hCCCCCCEEEE--ECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 5666 57999999998 54443 44588888887533 34677777663
No 145
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=92.05 E-value=0.21 Score=37.86 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=36.9
Q ss_pred ccccccCCCCeeeEE-EEeecccchhhHHhhhhcccc-ceEEEEEeee
Q psy11904 5 AETWALNNGDRITSV-RISFRHMVYEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 5 ~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
++...|++||+|+++ -...+++..+|++.+|+.+.+ =.|.+.+.|.
T Consensus 45 ~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~ 92 (113)
T 3soe_A 45 QWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRG 92 (113)
T ss_dssp GGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEES
T ss_pred HHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence 566789999999996 357788889999999987543 3688888874
No 146
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=91.97 E-value=0.16 Score=38.15 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=33.9
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+|..+ .-.|.+.+.|.
T Consensus 46 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~r~ 94 (196)
T 3gsl_A 46 GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-GSIVRLYVMRR 94 (196)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEEE
T ss_pred ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEec
Confidence 7899999999999999931 233444556666666554 45688888764
No 147
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=91.95 E-value=0.02 Score=42.34 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=28.5
Q ss_pred ccchhhcccc--------cCCCcCCcccccc----cCCcccCCCCCCC
Q psy11904 110 SCKICRQKVH--------QVGSHYCQACAYK----KGEHLVLVTADPE 145 (199)
Q Consensus 110 kCkiCK~kVh--------Q~G~kYCQ~CAYk----KGiCAMCGk~~~~ 145 (199)
+|..|++.+. .+|..||..|-.+ +|.|+.|+++...
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 7888887774 3467899999775 5699999998875
No 148
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.88 E-value=0.087 Score=37.05 Aligned_cols=45 Identities=7% Similarity=0.003 Sum_probs=32.1
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |... ++.+++++.+++.+ .-.+.+.+.|.
T Consensus 43 spA~~aG-l~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~ 90 (106)
T 2eei_A 43 GVAMRAG-VLADDHLIE--VNGENVEDASHEEVVEKVKKS-GSRVMFLLVDK 90 (106)
T ss_dssp SHHHHHT-CCSSEEEEE--ETTEECTTCCHHHHHHHHHHH-CSEEEEEECCT
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence 6888888 999999999 5443 44567888777654 34677776653
No 149
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=91.43 E-value=0.09 Score=44.88 Aligned_cols=48 Identities=27% Similarity=0.216 Sum_probs=36.7
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++..-|++||+|+++- +.++++.+++++.+|+.+ .=.|.+.++|.
T Consensus 114 spA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~V~L~V~R~ 162 (263)
T 1z87_A 114 LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYM 162 (263)
T ss_dssp SHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECC
T ss_pred CHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CCeEEEEEEeC
Confidence 6777778999999999943 345556679999998876 44688888873
No 150
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=91.37 E-value=0.22 Score=38.52 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=35.2
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++..-|++||+|+++- ...+++..+|++.+|..+ .-.|.+.+.|.
T Consensus 44 spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 92 (200)
T 2qt5_A 44 GIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNV-GERVVLEVEYE 92 (200)
T ss_dssp SHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEecc
Confidence 6777777899999999942 334555668888777654 34788888875
No 151
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=90.89 E-value=0.27 Score=35.41 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=31.7
Q ss_pred CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
||| + ..|++||+|++ |...+ +..++++.+|..+ .=.|.+.+.|.
T Consensus 57 spA-~-~gL~~GD~I~~--Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 103 (117)
T 2csj_A 57 GPA-D-GLLQENDRVVM--VNGTPMEDVLHSFAVQQLRKS-GKIAAIVVKRP 103 (117)
T ss_dssp SSH-H-HHBCTTCEEEE--ESSCBCBTCCHHHHHHHHHHS-CSEEEEEEEEE
T ss_pred Ccc-c-ccCCCCCEEEE--ECCEECCCcCHHHHHHHHhcC-CCeEEEEEEEC
Confidence 566 3 77999999999 55444 4568888888764 34678887764
No 152
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=90.88 E-value=0.19 Score=36.99 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=32.5
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++.+ |++||+|++ |....+ ..+|...+++.+.-=.|.+.+.|..
T Consensus 55 spA~~AG-L~~GD~Il~--VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 55 CSASVAG-AREGDYIVS--IQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 6777776 999999999 655444 3478888887543334777776543
No 153
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=90.72 E-value=0.18 Score=44.65 Aligned_cols=48 Identities=31% Similarity=0.418 Sum_probs=36.1
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccc-eEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPY-EVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PY-kv~~~l~re 50 (199)
|||++.+ |++||+|+++ -+.++++..++++.+|....|= .|.+.+.|.
T Consensus 42 spA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~ 91 (391)
T 3tsz_A 42 SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 91 (391)
T ss_dssp CHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEEC
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeC
Confidence 7899999 9999999994 2345556689999999864443 577777664
No 154
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=90.28 E-value=0.21 Score=35.82 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=28.3
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|++ |... ++...+++.++. ...-.|.+.+.|
T Consensus 53 spA~~aG-L~~GD~Il~--vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r 99 (117)
T 1uit_A 53 SIAHQAG-LEYGDQLLE--FNGINLRSATEQQARLIIG-QQCDTITILAQY 99 (117)
T ss_dssp SHHHHHT-CCTTCEECE--ETTEETTTCCHHHHHHHTT-SCCSEEEEEECC
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHH-cCCCeEEEEEEE
Confidence 6888888 999999999 4443 333444443333 334467777765
No 155
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.22 E-value=0.4 Score=33.51 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=31.9
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
||| + .-|++||+|++ |...++ .+++++.++.. ..=.|.+.+.|.
T Consensus 42 spA-~-agL~~GD~Il~--ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 88 (96)
T 2edv_A 42 GSA-H-GKLFPGDQILQ--MNNEPAEDLSWERAVDILRE-AEDSLSITVVRC 88 (96)
T ss_dssp SSS-T-TTSCTTCBEEE--ESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEEC
T ss_pred Cch-h-hCCCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 567 4 78999999999 666554 46777777775 345677777764
No 156
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=89.98 E-value=0.29 Score=36.21 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=30.5
Q ss_pred CccccccccCCCCeeeEEEEeecccch---hhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMVY---EDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~y---EDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||+|++ |....+.. +|...+|+.. --.|.+.+.|
T Consensus 57 spA~~aG-L~~GD~Il~--Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R 103 (118)
T 2yub_A 57 SPNNRNA-IHPGDRILE--INGTPVRTLRVEEVEDAIKQT-SQTLQLLIEH 103 (118)
T ss_dssp CTTHHHH-CCTTCCEEE--ESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEE
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCcCHHHHHHHHHhC-CCEEEEEEEE
Confidence 5676665 899999999 66655544 6777777765 3356666664
No 157
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=89.25 E-value=0.063 Score=39.33 Aligned_cols=45 Identities=29% Similarity=0.380 Sum_probs=30.0
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEE
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIET 47 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l 47 (199)
|||+++.-|++||+|+++- ...+++..+|++.+|+.+. =.|.+.+
T Consensus 64 spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~-~~v~l~V 109 (112)
T 2lob_A 64 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEV 109 (112)
Confidence 6888878899999999942 2333445788888886433 2355544
No 158
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=89.65 E-value=0.24 Score=45.59 Aligned_cols=47 Identities=32% Similarity=0.419 Sum_probs=36.5
Q ss_pred CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccc-eEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPY-EVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PY-kv~~~l~r 49 (199)
|||++.+ |++||+|+++ -+.++++..+++..+|+...|= .|.|.+.|
T Consensus 34 spA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r 82 (468)
T 3shw_A 34 SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK 82 (468)
T ss_dssp SHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEE
T ss_pred CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 7889888 9999999995 3567778899999999874332 46666666
No 159
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=88.68 E-value=0.41 Score=32.55 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=29.0
Q ss_pred CccccccccCCCCeeeEEEEeeccc-chhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM-VYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~-~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+ .++|....|....-=.+.+.+.|.
T Consensus 15 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~ 61 (91)
T 2zpm_A 15 SAASXAG-LQAGDRIVX--VDGQPLTQWVTFVMLVRDNPGXSLALEIERQ 61 (91)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEECCCHHHHHHHHHHCTTCCEEEEEEET
T ss_pred ChHHhcC-CCCCCEEEE--ECCeEcCCHHHHHHHHhcCCCCeEEEEEEEC
Confidence 5666654 999999999 544433 245666666654222567777663
No 160
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=88.05 E-value=0.42 Score=33.72 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=31.1
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+. ++|....|..+.+ =.|.+.+.|.
T Consensus 13 spA~~aG-l~~GD~I~~--ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R~ 60 (95)
T 3id1_A 13 SIAAEAQ-IAPGTELKA--VDGIETPDWDAVRLQLVDKIGDESTTITVAPF 60 (95)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEECSSHHHHHHHHHHTTTCSEEEEEEECT
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCHHHHHHHHHHhcCCCcEEEEEEEC
Confidence 5666554 999999999 5555443 3566666665555 4688888764
No 161
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=87.85 E-value=0.69 Score=32.47 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=32.5
Q ss_pred ccccccCCCCeeeEEEEeec---ccchhhHHhhhhccc-cceEEEEEeee
Q psy11904 5 AETWALNNGDRITSVRISFR---HMVYEDALTILSYAS-PYEVQIETEKE 50 (199)
Q Consensus 5 ~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~-PYkv~~~l~re 50 (199)
|...-|++||+|++ |... ++.++|+..+|+... -=.|.+.++|.
T Consensus 43 a~~aGL~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 90 (96)
T 1ujv_A 43 QGCPGLCEGDLIVE--INQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG 90 (96)
T ss_dssp GGSTTCCSSCEEEE--ETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred cccCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence 45677999999999 5444 445689999998764 34678887764
No 162
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=87.43 E-value=0.46 Score=32.60 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=27.4
Q ss_pred ccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEee
Q psy11904 3 HCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEK 49 (199)
Q Consensus 3 ~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~r 49 (199)
||++. -|++||.|++ |....+. .+|...+++...| =.|.+.+.|
T Consensus 31 ~A~~a-Gl~~GD~I~~--ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R 76 (87)
T 2i6v_A 31 LFESI-GLQDGDMAVA--LNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 76 (87)
T ss_dssp HHHHT-TCCTTCEEEE--ETTEETTCHHHHHHHHHTGGGCSEEEEEEEE
T ss_pred HHHHC-CCCCCCEEEE--ECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 34554 4999999999 6555443 3455566665443 356677765
No 163
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=87.41 E-value=0.39 Score=42.11 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=36.6
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccc-cceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYAS-PYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~-PYkv~~~l~re 50 (199)
|||++.+.|++||+|++ |... ++..++++.+|.... .-.|.+.+.|.
T Consensus 243 spA~~aG~L~~GD~Il~--VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~ 293 (388)
T 3suz_A 243 GPAARSGKLSIGDQIMS--INGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSC 293 (388)
T ss_dssp SHHHHTCCCCTTCEEEE--ETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEE--ECCEEccCCCHHHHHHHHHhccCCCccccccccc
Confidence 78999999999999999 5544 445578899998773 34588888774
No 164
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=87.15 E-value=0.44 Score=44.96 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=37.2
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+.|++||+|+++- ...+++..++++.+|..+. =.|.+.+.|.
T Consensus 100 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~R~ 148 (721)
T 2xkx_A 100 GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRR 148 (721)
T ss_pred CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccc-cccceEEEec
Confidence 6889999999999999953 4566777789998887653 3677777664
No 165
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=86.96 E-value=0.3 Score=32.40 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=28.8
Q ss_pred cccchhhccccc-----CCCcCCcccccc-----------cCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK-----------KGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk-----------KGiCAMCGk~~~~ 145 (199)
-.|.||...... =||.||..|..+ ...|.+|...++.
T Consensus 13 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 478888765544 389999999874 6789999988765
No 166
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.89 E-value=0.42 Score=31.12 Aligned_cols=38 Identities=13% Similarity=0.371 Sum_probs=29.0
Q ss_pred cccchhhcccccC-----CCcCCccccc-----ccCCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVHQV-----GSHYCQACAY-----KKGEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVhQ~-----G~kYCQ~CAY-----kKGiCAMCGk~~~~~ 146 (199)
-.|.||...+..+ ||.||..|.. ....|.+|.+.+...
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4799997765443 8999999976 345799999987753
No 167
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.80 E-value=0.56 Score=30.18 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=28.7
Q ss_pred cccchhhccccc-----CCCcCCcccccc-cCCcccCCCCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK-KGEHLVLVTADPEKGD 148 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk-KGiCAMCGk~~~~~~~ 148 (199)
-.|.||...... =||.||..|..+ ...|.+|.+..+...+
T Consensus 7 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLGAD 52 (56)
T ss_dssp SSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSCCSS
T ss_pred CCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeecCCc
Confidence 367777765433 388999999875 3579999988776443
No 168
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.61 E-value=0.35 Score=32.03 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=29.6
Q ss_pred cccchhhccccc-----CCCcCCcccccc----------cCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk----------KGiCAMCGk~~~~ 145 (199)
-.|.||...+.. =||.||..|... ...|.+|...++.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 479999876543 389999999865 6789999988775
No 169
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.30 E-value=0.21 Score=32.46 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=27.1
Q ss_pred ccchhhc-cc---------ccCCCcCCccccccc-----CCcccCCCCCCCC
Q psy11904 110 SCKICRQ-KV---------HQVGSHYCQACAYKK-----GEHLVLVTADPEK 146 (199)
Q Consensus 110 kCkiCK~-kV---------hQ~G~kYCQ~CAYkK-----GiCAMCGk~~~~~ 146 (199)
.|.||.. .. ..=||.||..|..+- ..|.+|++++...
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred cCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 6888877 21 234899999996433 6799999998764
No 170
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=85.71 E-value=0.63 Score=34.06 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=24.7
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhc
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSY 37 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~ 37 (199)
|||++.+ |++||+|++ |....+ ..+|.-.+++.
T Consensus 46 spA~~aG-L~~GD~Il~--vng~~v~~~~~~~l~~~l~~ 81 (94)
T 3kzd_A 46 GLASKKG-LKAGDEILE--INNRAADALNSSMLKDFLSQ 81 (94)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEEGGGCCHHHHHHHHHS
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHhC
Confidence 7888877 999999999 554443 46777777763
No 171
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=85.03 E-value=0.91 Score=34.29 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=30.6
Q ss_pred CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+. .+.+..+++....=.|.+.+++.
T Consensus 38 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~ 86 (166)
T 1w9e_A 38 SPASLVG-LRFGDQVLQ--INGENCAGWSSDKAHKVLKQAFGEKITMTIRDR 86 (166)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcC
Confidence 6888877 999999999 5443332 22356677665444778887653
No 172
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=84.83 E-value=0.39 Score=31.80 Aligned_cols=37 Identities=27% Similarity=0.567 Sum_probs=29.4
Q ss_pred cccchhhccccc-----CCCcCCcccccc----------cCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk----------KGiCAMCGk~~~~ 145 (199)
-.|.||...+.. =||.||..|... ...|.+|...++.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 479999876543 389999999765 6789999988765
No 173
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=84.69 E-value=0.72 Score=43.50 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=37.1
Q ss_pred CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904 2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI 51 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI 51 (199)
|||++.+.|++||+|+++- ..++++..+|+..+|+.+ .=.|.+.+.|.-
T Consensus 342 s~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~-~~~v~L~v~r~~ 391 (721)
T 2xkx_A 342 GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYKP 391 (721)
T ss_pred ChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEeCc
Confidence 7899999999999999942 344555679999999865 445777776653
No 174
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=84.51 E-value=1.7 Score=30.40 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=26.6
Q ss_pred CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||+ .-|++||+|++ |... ++...+++..+. ...-.|.+.+.|.
T Consensus 50 spA~--agl~~GD~I~~--vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 96 (107)
T 2h2b_A 50 GPAE--GQLQENDRVAM--VNGVSMDNVEHAFAVQQLR-KSGKNAKITIRRK 96 (107)
T ss_dssp STTB--TTBCTTCEEEE--ETTEECTTCCHHHHHHHHH-TCCSEEEEEEEEE
T ss_pred Cchh--hCCCCCCEEEE--ECCEECCCccHHHHHHHhh-CCCCEEEEEEEEC
Confidence 5666 68999999999 5443 333344444443 2223567777654
No 175
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=84.12 E-value=1.6 Score=30.69 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=31.2
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||+ . -|++||+|++ |....+. .+|...+|+...| -.|.+.+.|.
T Consensus 18 spA~-~-GL~~GD~I~~--Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~ 64 (100)
T 3i18_A 18 VPAA-D-VLHAGDLITE--IDGNAFKSSQEFIDYIHSKKVGDTVKINYKHG 64 (100)
T ss_dssp SGGG-G-TCCTTCEEEE--ETTBCCSSHHHHHHHHHTSCTTCEEEEEEEET
T ss_pred CchH-H-CCCCCCEEEE--ECCEECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 6777 4 7999999999 5555443 3566777776544 4678887763
No 176
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=83.86 E-value=0.35 Score=39.73 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=33.4
Q ss_pred CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceE-EEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEV-QIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv-~~~l~re 50 (199)
|||++.+ |++||+|++ |...+ +.++|+..+|+.. .-.| .+.+.|.
T Consensus 44 SpA~~aG-L~~GD~Il~--VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~ 92 (216)
T 2krg_A 44 SPAEASG-LRAQDRIVE--VNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRE 92 (216)
T ss_dssp SHHHHHT-CCTTCBCCE--ETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHH
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEEC
Confidence 6788888 999999999 55444 4588998888765 4456 6776653
No 177
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=83.30 E-value=0.72 Score=32.79 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=26.6
Q ss_pred ccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEee
Q psy11904 5 AETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEK 49 (199)
Q Consensus 5 ~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~r 49 (199)
++. -|++||.|++ |....+. .+|...+++...| =.|.+.+.|
T Consensus 51 ~~a-Gl~~GDvI~~--ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R 94 (105)
T 2i4s_A 51 ESI-GLQDGDMAVA--LNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 94 (105)
T ss_dssp HHH-TCCTTCEEEE--ETTEETTSTTHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHc-CCCCCCEEEE--ECCEECCCHHHHHHHHHhcCCCCeEEEEEEE
Confidence 444 5999999999 5555443 3455666665443 356677665
No 178
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=81.81 E-value=1.1 Score=31.79 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=27.7
Q ss_pred CccccccccCCCCeeeEEEEeeccc-chhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM-VYEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~-~yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||.|++ |....+ ..+|...+|+..++ +.+.+.|
T Consensus 46 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~l~~~~~--v~l~v~R 89 (113)
T 2pzd_A 46 SPAHRAG-LRPGDVILA--IGEQMVQNAEDVYEAVRTQSQ--LAVQIRR 89 (113)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECCSHHHHHHHHHHCSS--EEEEEEE
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCHHHHHHHHhCCCe--EEEEEEE
Confidence 6777765 999999999 444433 24566667765444 5555554
No 179
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.73 E-value=0.1 Score=34.73 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=33.1
Q ss_pred cccchhhccccc-----CCCcCCcccccc----cCCcccCCCCCCCCCCcceeeec
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK----KGEHLVLVTADPEKGDKFALISG 155 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk----KGiCAMCGk~~~~~~~~~~~i~g 155 (199)
..|.||...+.. =||.||..|..+ ...|.+|...+....-..|..+|
T Consensus 16 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p~~sg 71 (71)
T 2d8t_A 16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGPSSG 71 (71)
T ss_dssp CBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCSCSCC
T ss_pred CCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCCCCCC
Confidence 478888775543 388999999753 46899999988765444444443
No 180
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.53 E-value=0.66 Score=30.73 Aligned_cols=39 Identities=13% Similarity=0.326 Sum_probs=29.6
Q ss_pred cccchhhcccc------cCCCcCCcccccc----cCCcccCCCCCCCCC
Q psy11904 109 ESCKICRQKVH------QVGSHYCQACAYK----KGEHLVLVTADPEKG 147 (199)
Q Consensus 109 skCkiCK~kVh------Q~G~kYCQ~CAYk----KGiCAMCGk~~~~~~ 147 (199)
-.|.||...+. .=||.||..|..+ ...|.+|.+.+....
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 47888877543 4488899999743 678999999887643
No 181
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=81.48 E-value=0.56 Score=32.21 Aligned_cols=37 Identities=22% Similarity=0.471 Sum_probs=27.3
Q ss_pred cccchhhccccc----C--CCcCCccccccc------CCcccCCCCCCC
Q psy11904 109 ESCKICRQKVHQ----V--GSHYCQACAYKK------GEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVhQ----~--G~kYCQ~CAYkK------GiCAMCGk~~~~ 145 (199)
-.|.||...+.. + ||.||..|...- ..|.+|.+++..
T Consensus 14 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62 (92)
T ss_dssp TEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred CCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence 479999875543 2 999999997432 489999988643
No 182
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=81.32 E-value=0.73 Score=29.81 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=27.3
Q ss_pred cccchhhcccccC------CCcCCcccccc----cCCcccCCCCCC
Q psy11904 109 ESCKICRQKVHQV------GSHYCQACAYK----KGEHLVLVTADP 144 (199)
Q Consensus 109 skCkiCK~kVhQ~------G~kYCQ~CAYk----KGiCAMCGk~~~ 144 (199)
..|.||......+ ||.||..|..+ ...|.+|..++.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4688887665442 78899999853 678999998775
No 183
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=81.08 E-value=0.31 Score=32.55 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=27.4
Q ss_pred cccchhhccccc-----CCCcCCcccccc-----cCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk-----KGiCAMCGk~~~~ 145 (199)
-.|.||..-... -||.||..|..+ ...|.+|+++++.
T Consensus 9 ~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 478888765433 389999999642 5689999988764
No 184
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=79.85 E-value=2 Score=32.15 Aligned_cols=42 Identities=24% Similarity=0.100 Sum_probs=26.8
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEE
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIET 47 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l 47 (199)
|||++. |++||+|++ |....+. .+|...+|....| -.|.+.+
T Consensus 36 spA~~a--L~~GD~Il~--InG~~v~~~~dl~~~l~~~~~g~~v~l~V 79 (125)
T 2hga_A 36 SPASKV--LTPGLVIES--INGMPTSNLTTYSAALKTISVGEVINITT 79 (125)
T ss_dssp SGGGGT--SCTTCEEEE--ETTEECSSHHHHHHHHTTCCTTCEEEEEE
T ss_pred ChHHHh--cCCCCEEEE--ECCEEcCCHHHHHHHHHhcCCCCEEEEEE
Confidence 678887 999999998 5544443 3455556664332 2466666
No 185
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.65 E-value=0.48 Score=30.99 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=28.7
Q ss_pred cccchhhccccc-----CCCcCCccccccc-------CCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYKK-------GEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYkK-------GiCAMCGk~~~~~ 146 (199)
..|.||...+.. =||.||..|..+- ..|.+|.+.+...
T Consensus 21 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 489999875543 4899999997543 3799999887653
No 186
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=79.61 E-value=0.67 Score=31.05 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=28.1
Q ss_pred cccchhhccccc------CCCcCCccccccc------CCcccCCCCCCCCCCc
Q psy11904 109 ESCKICRQKVHQ------VGSHYCQACAYKK------GEHLVLVTADPEKGDK 149 (199)
Q Consensus 109 skCkiCK~kVhQ------~G~kYCQ~CAYkK------GiCAMCGk~~~~~~~~ 149 (199)
-.|.||...+.. =||.||..|...- ..|.+|.+.+.....-
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp GSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 478888765433 2899999996321 4899999876554433
No 187
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=79.01 E-value=0.73 Score=39.21 Aligned_cols=79 Identities=10% Similarity=0.060 Sum_probs=45.6
Q ss_pred CcccccCCCCCCCcccccCCCccc----ccccchhhh-hhccCCCc--ccCcccchhhcccccCCCcCCccc-------c
Q psy11904 65 GKVITPDNWKSGSRNTIESGGRRI----GENKALTAS-KARFNPYT--QKFESCKICRQKVHQVGSHYCQAC-------A 130 (199)
Q Consensus 65 ~KLaTPD~wK~Gs~nt~~~ggRkI----geNKLLSs~-K~R~nPY~--~~~skCkiCK~kVhQ~G~kYCQ~C-------A 130 (199)
..|-+-|.||.|. +-|.++ ++=|-++.- +++-+|=+ .+.+.|+.|...+ ..|=-+. +
T Consensus 59 ~~~~~~~~~~~~~-----~~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l----r~YGIT~eey~~L~e 129 (200)
T 3gox_A 59 SELEAIDIYRTGK-----GYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI----DGVKLSSTEKKKMDE 129 (200)
T ss_dssp GGEEECCGGGSST-----TSSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH----HCSCCCHHHHHHHHT
T ss_pred hhcceeeeeeccc-----cCCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc----CCcCCCHHHHHHHHH
Confidence 3588899999875 223443 555556542 34444433 2467888888754 1333222 1
Q ss_pred ccc-----CCcccCCCCCCCCCCccee
Q psy11904 131 YKK-----GEHLVLVTADPEKGDKFAL 152 (199)
Q Consensus 131 YkK-----GiCAMCGk~~~~~~~~~~~ 152 (199)
-+. |.|++||++......+.++
T Consensus 130 ~Qg~~~~~G~C~ICg~~~~~~~~k~lv 156 (200)
T 3gox_A 130 IAPPKGSVFTCPICEKRSIVGVTANLV 156 (200)
T ss_dssp TCCCTTCEEECTTTCCEEEBTTTBCEE
T ss_pred HcccCCCCCcCcCCCCCCCcCccccee
Confidence 234 7999999887754333333
No 188
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=78.73 E-value=1.6 Score=37.83 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=31.5
Q ss_pred CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+. .+|+..+|....-=.|.+.+.|.
T Consensus 110 spA~~aG-l~~GD~I~~--Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 158 (388)
T 1fc6_A 110 GPAEKAG-ARAGDVIVT--VDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP 158 (388)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTEECTTCCHHHHHHHHCBSTTCEEEEEEEET
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeC
Confidence 6888877 999999998 5544443 36777777644334567776653
No 189
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=77.66 E-value=0.97 Score=31.63 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=31.1
Q ss_pred cccchhhccccc---------CCCcCCcccccc-----cCCcccCCCCCCCCCC
Q psy11904 109 ESCKICRQKVHQ---------VGSHYCQACAYK-----KGEHLVLVTADPEKGD 148 (199)
Q Consensus 109 skCkiCK~kVhQ---------~G~kYCQ~CAYk-----KGiCAMCGk~~~~~~~ 148 (199)
..|.||-..+.. =||.+|+.|..+ .+.|.+|-++.....-
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 479999887753 499999999543 4689999998876543
No 190
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.41 E-value=0.8 Score=32.20 Aligned_cols=38 Identities=16% Similarity=0.467 Sum_probs=28.0
Q ss_pred cccchhhccccc-----CCCcCCcccccc---c----CCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK---K----GEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk---K----GiCAMCGk~~~~~ 146 (199)
-.|.||...... =||.||..|... . ..|.+|..+++..
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 378899875544 389999999642 1 2799999887753
No 191
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.99 E-value=0.95 Score=30.09 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=30.7
Q ss_pred CcccchhhcccccC--------CCcCCccccc----ccCCcccCCCCCCCCC
Q psy11904 108 FESCKICRQKVHQV--------GSHYCQACAY----KKGEHLVLVTADPEKG 147 (199)
Q Consensus 108 ~skCkiCK~kVhQ~--------G~kYCQ~CAY----kKGiCAMCGk~~~~~~ 147 (199)
...|.||-..+... ||.||..|.. ....|.+|-..++...
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 45899999766543 7889999965 4678999998887654
No 192
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.83 E-value=0.41 Score=30.72 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=28.1
Q ss_pred cccchhhcccc------------cCCCcCCcccccc----cCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVH------------QVGSHYCQACAYK----KGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVh------------Q~G~kYCQ~CAYk----KGiCAMCGk~~~~ 145 (199)
..|.||...+. .=||.||..|..+ ...|.+|.+.++.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 47888876443 3488999999753 5789999988765
No 193
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=76.76 E-value=1.8 Score=38.66 Aligned_cols=45 Identities=24% Similarity=0.175 Sum_probs=33.2
Q ss_pred CccccccccCCCCeeeEEEEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+...+...+|+- ..-.|.+.+.|.
T Consensus 101 sPA~~AG-L~~GD~I~~--InG~~v~~~~~~~~l~~-~g~~v~l~v~R~ 145 (403)
T 3k50_A 101 SPAEEAG-LQRGHWIMM--MNGDYITKKVESELLQG-STRQLQIGVYKE 145 (403)
T ss_dssp SHHHHTT-CCTTCEEEE--ETTBCBCTTTGGGGTSC-SCEEEEEEEEEE
T ss_pred ChHHHcC-CCCCCEEEE--ECCEEccchhHHHHhhC-CCCEEEEEEEeC
Confidence 7888888 999999999 66666655555556655 566777777664
No 194
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.07 E-value=0.91 Score=30.63 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=28.9
Q ss_pred cccchhhcccc-----cCCCc-CCcccccccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVH-----QVGSH-YCQACAYKKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVh-----Q~G~k-YCQ~CAYkKGiCAMCGk~~~~ 145 (199)
..|.||..... .=||. +|..|+-+...|.+|..++..
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecC
Confidence 47889866433 23667 999999999999999987765
No 195
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.53 E-value=0.38 Score=31.44 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=34.1
Q ss_pred cccchhhccc----ccCCCcCCccccc----ccCCcccCCCCCCCCCCcceeeec
Q psy11904 109 ESCKICRQKV----HQVGSHYCQACAY----KKGEHLVLVTADPEKGDKFALISG 155 (199)
Q Consensus 109 skCkiCK~kV----hQ~G~kYCQ~CAY----kKGiCAMCGk~~~~~~~~~~~i~g 155 (199)
..|.||.... ..=||.||..|.. ....|.+|..+++.....+.+-+|
T Consensus 16 ~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~G 70 (70)
T 2ecn_A 16 EECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPSSG 70 (70)
T ss_dssp CCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCCCC
T ss_pred CCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCCCC
Confidence 4788887753 2347889999986 468899999988876655544443
No 196
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=74.97 E-value=1 Score=32.03 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=33.9
Q ss_pred cccchhhcccc-----------------------cCCCcCCccccc---------ccCCcccCCCCCCCCCCccee
Q psy11904 109 ESCKICRQKVH-----------------------QVGSHYCQACAY---------KKGEHLVLVTADPEKGDKFAL 152 (199)
Q Consensus 109 skCkiCK~kVh-----------------------Q~G~kYCQ~CAY---------kKGiCAMCGk~~~~~~~~~~~ 152 (199)
..|.||...+. .=||.||..|.. ....|.+|-..+.++++.+|-
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 48999977752 247789999953 256899999999988887764
No 197
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=74.28 E-value=0.64 Score=40.75 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=0.0
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEe
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETE 48 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~ 48 (199)
|||++.+ |++||+|++ |...++ ..++++.+|+. .+=.|.+.+.
T Consensus 326 s~A~~aG-L~~GD~Il~--VNg~~v~~~s~~~~~~~l~~-~~~~v~L~V~ 371 (388)
T 3suz_A 326 GIAERGG-VRVGHRIIE--INGQSVVATAHEKIVQALSN-SVGEIHMKTM 371 (388)
T ss_dssp --------------------------------------------------
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHh-CCCeEEEEEE
Confidence 6888888 999999999 666555 47889988876 3445555543
No 198
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.01 E-value=1.7 Score=28.88 Aligned_cols=38 Identities=11% Similarity=0.318 Sum_probs=28.7
Q ss_pred cccchhhcccc--------cCCCcCCccccc----ccCCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVH--------QVGSHYCQACAY----KKGEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVh--------Q~G~kYCQ~CAY----kKGiCAMCGk~~~~~ 146 (199)
..|.||...+. .=||.||..|.. ....|.+|.+.++..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 47888865443 347889999976 467899999888763
No 199
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=73.24 E-value=2.7 Score=29.73 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=25.7
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++. -|++||+|++ |....+. .+|....|+-.+ .+.+.+.|
T Consensus 46 spA~~a-Gl~~GD~I~~--ing~~v~~~~~~~~~l~~g~--~v~l~v~R 89 (112)
T 2p3w_A 46 SPSQRG-GIQDGDIIVK--VNGRPLVDSSELQEAVLTES--PLLLEVRR 89 (112)
T ss_dssp SHHHHH-TCCTTCEEEE--ETTEECCSHHHHHHHHHHCS--SEEEEEEE
T ss_pred ChHHHC-CCCCCCEEEE--ECCEECCCHHHHHHHHhCCC--eEEEEEEE
Confidence 566665 4999999998 5444332 345555664344 35555555
No 200
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.18 E-value=0.71 Score=31.14 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=27.9
Q ss_pred cccchhhcccccC-----CCcCCcccccc----cCCcccCCCCCC
Q psy11904 109 ESCKICRQKVHQV-----GSHYCQACAYK----KGEHLVLVTADP 144 (199)
Q Consensus 109 skCkiCK~kVhQ~-----G~kYCQ~CAYk----KGiCAMCGk~~~ 144 (199)
-.|.||...+..+ ||.||..|..+ ...|.+|.+.+.
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3788998765443 89999999743 567999998875
No 201
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=72.74 E-value=4.7 Score=29.92 Aligned_cols=44 Identities=18% Similarity=0.097 Sum_probs=28.1
Q ss_pred CccccccccCCCCeeeEEEEeecccch-hhHHhhhhcccc-ceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMVY-EDALTILSYASP-YEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~y-EDAl~iL~~a~P-Ykv~~~l~r 49 (199)
|||+ .-|++||+|++ |....+.. +|....|....| -.|.+.+.|
T Consensus 68 spA~--aGL~~GD~I~~--inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R 113 (134)
T 2l97_A 68 MPAN--GHLEKYDVITK--VDDKEIASSTDLQSALYNHSIGDTIKITYYR 113 (134)
T ss_dssp SGGG--TTSCSSCEEEE--ETTEECCCHHHHHHHHHHSSTTCEEEEEEEE
T ss_pred CchH--HCCCCCCEEEE--ECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 6776 57999999998 55444432 444556665433 357777765
No 202
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=72.46 E-value=1.2 Score=30.10 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=29.7
Q ss_pred cccchhhcccc-----cCCCc-CCcccccccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVH-----QVGSH-YCQACAYKKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVh-----Q~G~k-YCQ~CAYkKGiCAMCGk~~~~ 145 (199)
..|.||..... .=||. +|..|+..-..|.+|-+++..
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccC
Confidence 47999987544 23777 999999999999999987754
No 203
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=71.57 E-value=1.2 Score=32.43 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=28.0
Q ss_pred cccchhhcccc-----cCCCcCCccccc-----ccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVH-----QVGSHYCQACAY-----KKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVh-----Q~G~kYCQ~CAY-----kKGiCAMCGk~~~~ 145 (199)
-.|.||...+. .=||.||..|.. ....|.+|.++++.
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 37999976543 338889999974 33489999998876
No 204
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=70.83 E-value=0.91 Score=34.64 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=28.7
Q ss_pred ccchhhcccc------cCCCcCCcccccc-----cCCcccCCCCCCCC
Q psy11904 110 SCKICRQKVH------QVGSHYCQACAYK-----KGEHLVLVTADPEK 146 (199)
Q Consensus 110 kCkiCK~kVh------Q~G~kYCQ~CAYk-----KGiCAMCGk~~~~~ 146 (199)
.|.||...+. .=||.||..|..+ ...|.+|...++..
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 7999976443 3489999999754 67899999988653
No 205
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=70.22 E-value=0.96 Score=33.81 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=27.5
Q ss_pred ccchhhcccc-----cCCCcCCccccc----ccCCcccCCCCCCC
Q psy11904 110 SCKICRQKVH-----QVGSHYCQACAY----KKGEHLVLVTADPE 145 (199)
Q Consensus 110 kCkiCK~kVh-----Q~G~kYCQ~CAY----kKGiCAMCGk~~~~ 145 (199)
.|.||..... .=||.||..|.. .+..|++|.++++.
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 6999976543 348999999975 36789999988754
No 206
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=69.57 E-value=0.87 Score=35.20 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=29.8
Q ss_pred cccchhhcccccCCCcC-Ccccc---cccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVHQVGSHY-CQACA---YKKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVhQ~G~kY-CQ~CA---YkKGiCAMCGk~~~~ 145 (199)
..|.+|.+.+.+.|..| |..|. -+.+.|.-||.++-.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHH
Confidence 58999999987777777 88883 467899999988754
No 207
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=69.10 E-value=0.76 Score=28.99 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=27.4
Q ss_pred cccchhhcccc------------cCCCcCCccccc----ccCCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVH------------QVGSHYCQACAY----KKGEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVh------------Q~G~kYCQ~CAY----kKGiCAMCGk~~~~~ 146 (199)
..|.||...+. .=||.||..|.. ....|.+|..+++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 36777765432 348889999975 467899999887754
No 208
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=69.01 E-value=3.1 Score=31.22 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.7
Q ss_pred CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhc
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSY 37 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~ 37 (199)
|||++. -|++||+|++ |....+ .++|..++++.
T Consensus 50 SpA~~A-GL~~GD~I~~--Ing~~v~~~s~~dv~~~i~~ 85 (101)
T 3qik_A 50 SLAEVA-GLQVGRKIYS--INEDLVFLRPFSEVESILNQ 85 (101)
T ss_dssp SHHHHH-TCCTTCBEEE--ETTEESTTSCHHHHHHHHHH
T ss_pred CHHHHc-CCCCCCEEEE--ECCEEcCcCCHHHHHHHHHH
Confidence 566444 5899999999 666654 68888888776
No 209
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=68.93 E-value=1.3 Score=31.78 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=26.9
Q ss_pred cccchhhccccc-----CCCcCCcccccc-----cCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk-----KGiCAMCGk~~~~ 145 (199)
-.|.||...+.. =||.||..|..+ ...|.+|.+.++.
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 368888765433 388899999654 4589999988763
No 210
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=68.30 E-value=0.82 Score=29.59 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=28.5
Q ss_pred cccchhhcccc------------cCCCcCCccccc----ccCCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVH------------QVGSHYCQACAY----KKGEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVh------------Q~G~kYCQ~CAY----kKGiCAMCGk~~~~~ 146 (199)
..|.||...+. .=||.||..|.. ....|.+|..++...
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 47888876532 347889999974 467999999888753
No 211
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=66.25 E-value=5.6 Score=33.24 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=30.9
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++. -|++||+|++ |....+. .+|...+|+...| =.|.+.+.|.
T Consensus 255 spA~~a-GL~~GD~I~~--ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~ 302 (318)
T 1te0_A 255 GPAANA-GIQVNDLIIS--VDNKPAISALETMDQVAEIRPGSVIPVVVMRD 302 (318)
T ss_dssp STTTTT-CCCTTCCEEE--ETTEECCCHHHHHHHHHTSCTTCEEEEEEESS
T ss_pred ChHHHC-CCCCCCEEEE--ECCEEcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 566655 4899999998 5555443 4566677765444 4678887764
No 212
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=66.23 E-value=5 Score=35.49 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=33.2
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+. .+|...+|+. .|=.|.+.+.|.
T Consensus 374 spA~~aG-L~~GD~I~~--vng~~v~~~~~~~~~l~~-~~~~v~l~v~R~ 419 (436)
T 4a8c_A 374 SPAAQAG-LQKDDVIIG--VNRDRVNSIAEMRKVLAA-KPAIIALQIVRG 419 (436)
T ss_pred CHHHHcC-CCCCCEEEE--ECCEECCCHHHHHHHHHh-CCCeEEEEEEEC
Confidence 6777776 999999999 5555443 4666788876 455788888874
No 213
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.74 E-value=1.8 Score=26.85 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=21.8
Q ss_pred cccchhhcccccC-----CCcCCcccccc-------cCCcccC
Q psy11904 109 ESCKICRQKVHQV-----GSHYCQACAYK-------KGEHLVL 139 (199)
Q Consensus 109 skCkiCK~kVhQ~-----G~kYCQ~CAYk-------KGiCAMC 139 (199)
..|.||...+..+ ||.||..|..+ ...|.+|
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4788888766554 88899999643 3456665
No 214
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.17 E-value=2.1 Score=31.55 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=18.6
Q ss_pred ccchhhcccccCCCcC-Ccccc---cccCCcccCCCCCC
Q psy11904 110 SCKICRQKVHQVGSHY-CQACA---YKKGEHLVLVTADP 144 (199)
Q Consensus 110 kCkiCK~kVhQ~G~kY-CQ~CA---YkKGiCAMCGk~~~ 144 (199)
.|..|.+.+.+.+..| |..|. -+.+.|.-||.++-
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCccccCCCceECccccccCCCcccCcchhhHHH
Confidence 5666666665544444 55552 12345666665553
No 215
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=64.14 E-value=3.7 Score=25.27 Aligned_cols=36 Identities=11% Similarity=0.299 Sum_probs=24.4
Q ss_pred cccchhhccccc---------CCCcCCcccccc----cCCcccCCCCCC
Q psy11904 109 ESCKICRQKVHQ---------VGSHYCQACAYK----KGEHLVLVTADP 144 (199)
Q Consensus 109 skCkiCK~kVhQ---------~G~kYCQ~CAYk----KGiCAMCGk~~~ 144 (199)
..|.||...+.. =||.||..|..+ ...|.+|.+.++
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 356666554322 377889999753 778999987653
No 216
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=63.80 E-value=6.4 Score=34.79 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=31.7
Q ss_pred CccccccccCCCCeeeEEEEeecccch-hhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMVY-EDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~y-EDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+.. +|...+|....| =.|.+.+.|.
T Consensus 274 spA~~aG-L~~GD~I~~--vnG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~ 321 (436)
T 4a8c_A 274 SGSAKAG-VKAGDIITS--LNGKPLNSFAELRSRIATTEPGTKVKLGLLRN 321 (436)
T ss_pred ChHHHCC-CCCCCEEEE--ECCEECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 6788877 999999999 66555543 445555655444 4678888764
No 217
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=62.26 E-value=5.2 Score=31.59 Aligned_cols=46 Identities=15% Similarity=0.071 Sum_probs=31.0
Q ss_pred CccccccccCC-CCeeeEEEEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904 2 SHCAETWALNN-GDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~-GD~i~s~ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re 50 (199)
|||++.+ |++ ||.|++ |...-...+|...+|+...--.|.+.+.|.
T Consensus 123 spA~~aG-l~~~GD~I~~--ing~v~~~~~l~~~l~~~~g~~v~l~v~r~ 169 (209)
T 3rle_A 123 SPAALAG-LRPHSDYIIG--ADTVMNESEDLFSLIETHEAKPLKLYVYNT 169 (209)
T ss_dssp SHHHHHT-CCTTTEEEEE--ESSCCCSSSCHHHHHHHTTTSCEEEEEEET
T ss_pred ChHHHCC-CCCCCCEEEE--CCCEeCCHHHHHHHHHhCCCCeEEEEEEEC
Confidence 6777765 899 999999 454422345557777766444688888663
No 218
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=61.24 E-value=1.5 Score=31.03 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=29.4
Q ss_pred cccchhhcccccC------------CCcCCccccc----ccCCcccCCCCCCCCC
Q psy11904 109 ESCKICRQKVHQV------------GSHYCQACAY----KKGEHLVLVTADPEKG 147 (199)
Q Consensus 109 skCkiCK~kVhQ~------------G~kYCQ~CAY----kKGiCAMCGk~~~~~~ 147 (199)
-.|.||...+..+ ||.||..|.. .+..|.+|.+.++...
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 4788887655433 8999999974 4578999999887643
No 219
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.09 E-value=2.3 Score=28.42 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=28.3
Q ss_pred cccchhhccccc---------CCCcCCcccccc-------cCCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVHQ---------VGSHYCQACAYK-------KGEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVhQ---------~G~kYCQ~CAYk-------KGiCAMCGk~~~~~ 146 (199)
..|.||...... =||.||..|..+ ...|.+|.+.....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 478888876543 388999999754 26899999876553
No 220
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=59.79 E-value=1.7 Score=31.43 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=25.5
Q ss_pred ccchhhcccc------cCCCcCCcccccc--cCCcccCCCCCCC
Q psy11904 110 SCKICRQKVH------QVGSHYCQACAYK--KGEHLVLVTADPE 145 (199)
Q Consensus 110 kCkiCK~kVh------Q~G~kYCQ~CAYk--KGiCAMCGk~~~~ 145 (199)
+|..|+..+. .+|..||..|-.+ ...|+.|+++...
T Consensus 32 ~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 32 CCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp BCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 6777776553 3467788888765 3589999987764
No 221
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=59.71 E-value=2.8 Score=27.08 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=27.2
Q ss_pred cccchhhcccc--------cCCCcCCccccc----ccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVH--------QVGSHYCQACAY----KKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVh--------Q~G~kYCQ~CAY----kKGiCAMCGk~~~~ 145 (199)
..|.||...+. .=||.||..|.. ....|.+|-..++.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 47888865442 237889999976 36789999987765
No 222
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=59.65 E-value=9.2 Score=31.86 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=28.4
Q ss_pred CccccccccCCCCeeeEEEEeecccch-hhHHhhhhcccc-ceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMVY-EDALTILSYASP-YEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~y-EDAl~iL~~a~P-Ykv~~~l~r 49 (199)
|||++. -|++||+|++ |....+.. +|...+|....| -.|.+.+.|
T Consensus 253 spA~~a-Gl~~GD~I~~--ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R 299 (324)
T 1y8t_A 253 GAAANA-GVPKGVVVTK--VDDRPINSADALVAAVRSKAPGATVALTFQD 299 (324)
T ss_dssp STTTTT-TCCTTCEEEE--ETTEECCSHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred ChHHHc-CCCCCCEEEE--ECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 566665 4999999998 55544433 344556654433 357777776
No 223
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=59.55 E-value=1.3 Score=32.17 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=26.0
Q ss_pred ccchhhcccc--------cCCCcCCccccccc----CCcccCCCCCC
Q psy11904 110 SCKICRQKVH--------QVGSHYCQACAYKK----GEHLVLVTADP 144 (199)
Q Consensus 110 kCkiCK~kVh--------Q~G~kYCQ~CAYkK----GiCAMCGk~~~ 144 (199)
+|..|++.+. .+|..||..|-.+. +.|+.|+++..
T Consensus 31 ~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 31 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp BCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred ccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 7888887773 24678999997653 38999998664
No 224
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=59.53 E-value=2.8 Score=33.20 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=27.6
Q ss_pred Ccccchhhcccc-----cCCCcCCcccccc----cC-CcccCCCCCCC
Q psy11904 108 FESCKICRQKVH-----QVGSHYCQACAYK----KG-EHLVLVTADPE 145 (199)
Q Consensus 108 ~skCkiCK~kVh-----Q~G~kYCQ~CAYk----KG-iCAMCGk~~~~ 145 (199)
.-.|.||..-.. .-||.||..|-.. .+ .|++|+.+++.
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 458999976433 3599999999541 23 39999998864
No 225
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=58.48 E-value=13 Score=24.41 Aligned_cols=23 Identities=9% Similarity=-0.145 Sum_probs=15.0
Q ss_pred CcCCccccccc--CCcccCCCCCCC
Q psy11904 123 SHYCQACAYKK--GEHLVLVTADPE 145 (199)
Q Consensus 123 ~kYCQ~CAYkK--GiCAMCGk~~~~ 145 (199)
..||..|-++. ..|+.|+++...
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~ 27 (77)
T 2egq_A 3 SGSSGDCYKNFVAKKCAGCKNPITG 27 (77)
T ss_dssp SSCCTTCCCSCCCCCCSSSCCCCCC
T ss_pred CeEchhHhchhhCccCcccCCcccC
Confidence 45777775543 567777777664
No 226
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.20 E-value=6.9 Score=26.30 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=29.4
Q ss_pred Ccccchhhcccc-----cCCCc-CCcccccccCCcccCCCCCCC
Q psy11904 108 FESCKICRQKVH-----QVGSH-YCQACAYKKGEHLVLVTADPE 145 (199)
Q Consensus 108 ~skCkiCK~kVh-----Q~G~k-YCQ~CAYkKGiCAMCGk~~~~ 145 (199)
...|.||..... .=||. +|..|+-.-..|.+|-.....
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 457999966443 23666 899999999999999987665
No 227
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.02 E-value=3.1 Score=26.51 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=22.3
Q ss_pred cccchhhcccccC-----CCcCCcccccc-------cCCcccC
Q psy11904 109 ESCKICRQKVHQV-----GSHYCQACAYK-------KGEHLVL 139 (199)
Q Consensus 109 skCkiCK~kVhQ~-----G~kYCQ~CAYk-------KGiCAMC 139 (199)
..|.||...+..+ ||.||..|..+ ...|.+|
T Consensus 21 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4899998766554 89999999643 2357666
No 228
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=55.07 E-value=3.2 Score=28.77 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=25.3
Q ss_pred ccchhhcccc------cCCCcCCccccccc--CCcccCCCCCC
Q psy11904 110 SCKICRQKVH------QVGSHYCQACAYKK--GEHLVLVTADP 144 (199)
Q Consensus 110 kCkiCK~kVh------Q~G~kYCQ~CAYkK--GiCAMCGk~~~ 144 (199)
+|..|++.+. .+|..||..|..+. ..|+.|+++..
T Consensus 35 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 35 RCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 6777777653 24668999997654 68999997654
No 229
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=55.04 E-value=3.5 Score=31.62 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=21.6
Q ss_pred ccchhhcccc-----cCCCcCCccccccc--CCcccCCCCCC
Q psy11904 110 SCKICRQKVH-----QVGSHYCQACAYKK--GEHLVLVTADP 144 (199)
Q Consensus 110 kCkiCK~kVh-----Q~G~kYCQ~CAYkK--GiCAMCGk~~~ 144 (199)
+|..|+..+. .+|..||..|-++. -.|+.|++++.
T Consensus 35 ~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 35 KCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp BCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred ccCCCCCcCCCCCcccCCeeeecccccccccccccccccccC
Confidence 5666665542 34667777776553 56777776654
No 230
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=54.93 E-value=3.2 Score=28.85 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=27.4
Q ss_pred cccchhhcccc------cCCCcCCcccccc----cCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVH------QVGSHYCQACAYK----KGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVh------Q~G~kYCQ~CAYk----KGiCAMCGk~~~~ 145 (199)
-.|.||..... .=||.||..|..+ +..|.+|...+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 37888876432 3588999999643 5689999987764
No 231
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=54.81 E-value=3.1 Score=29.44 Aligned_cols=38 Identities=11% Similarity=0.266 Sum_probs=28.5
Q ss_pred cccchhhccc------ccCCCcCCcccccc----cCCcccCCCCCCCC
Q psy11904 109 ESCKICRQKV------HQVGSHYCQACAYK----KGEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kV------hQ~G~kYCQ~CAYk----KGiCAMCGk~~~~~ 146 (199)
-.|.||...+ ..=||.||..|... ...|.+|+..+...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3788887643 24589999999654 37899999887764
No 232
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=53.31 E-value=3.5 Score=32.02 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=28.0
Q ss_pred ccchhhcccc-----cCCCcCCccccccc--CCcccCCCCCCC
Q psy11904 110 SCKICRQKVH-----QVGSHYCQACAYKK--GEHLVLVTADPE 145 (199)
Q Consensus 110 kCkiCK~kVh-----Q~G~kYCQ~CAYkK--GiCAMCGk~~~~ 145 (199)
+|..|+..+. .+|..||..|-++. -.|+.|++++..
T Consensus 89 ~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 89 KCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPP 131 (182)
T ss_dssp SCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCS
T ss_pred ccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCC
Confidence 7888888764 35788999998765 589999987754
No 233
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=53.31 E-value=3 Score=29.83 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=28.7
Q ss_pred cccchhhccccc-----CCCcCCcccccc-----cCCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk-----KGiCAMCGk~~~~~ 146 (199)
-.|.||...+.. =||.||..|..+ ...|.+|..+++..
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 378888775443 489999999752 56899999887653
No 234
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.85 E-value=12 Score=26.36 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=31.9
Q ss_pred CcccCcccchhhcccccCCCcCCccccc--------------ccCCcccCCCCCCCCCCcce
Q psy11904 104 YTQKFESCKICRQKVHQVGSHYCQACAY--------------KKGEHLVLVTADPEKGDKFA 151 (199)
Q Consensus 104 Y~~~~skCkiCK~kVhQ~G~kYCQ~CAY--------------kKGiCAMCGk~~~~~~~~~~ 151 (199)
|......|.||+.-+++ | .-|..|-. .+..|.+|....+-.....|
T Consensus 11 y~~~i~~C~IC~~~i~~-g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQ-G-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp CSSSSCBCSSSCCBCSS-S-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCC
T ss_pred ccCCCCcCcchhhHccc-C-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCC
Confidence 44446789999999986 3 67776533 23789999988776544443
No 235
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=52.32 E-value=8.3 Score=30.42 Aligned_cols=45 Identities=20% Similarity=0.043 Sum_probs=28.3
Q ss_pred CccccccccCCC-CeeeEEEEeecccc-hhhH-HhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNG-DRITSVRISFRHMV-YEDA-LTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~G-D~i~s~ti~F~n~~-yEDA-l~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++| |+|++ |....+. .+|. ..++....-=.|.+.+.|
T Consensus 27 SpA~~AG-L~~G~D~I~~--ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R 74 (209)
T 3rle_A 27 SPGHRAG-LEPFFDFIVS--INGSRLNKDNDTLKDLLKANVEKPVKMLIYS 74 (209)
T ss_dssp SHHHHTT-CCTTTEEEEE--ETTEECCSSSSHHHHHHHHTTTSCEEEEEEE
T ss_pred CHHHHCC-CCcCCeEEEE--ECCEECcCHHHHHHHHHhcCCCCEEEEEEEe
Confidence 6777766 8998 99998 5444333 2333 344444434568888766
No 236
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.28 E-value=8.3 Score=27.76 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=27.4
Q ss_pred cccchhhcccc------cCCCcCCccccccc--CCcccCCCCCCC
Q psy11904 109 ESCKICRQKVH------QVGSHYCQACAYKK--GEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVh------Q~G~kYCQ~CAYkK--GiCAMCGk~~~~ 145 (199)
-.|.||..... .=||.||..|...- ..|.+|..++..
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 37888865431 45899999997654 679999988753
No 237
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.21 E-value=3.7 Score=29.66 Aligned_cols=23 Identities=22% Similarity=0.702 Sum_probs=16.9
Q ss_pred ccchhhccccc--------CCCcCCcccccc
Q psy11904 110 SCKICRQKVHQ--------VGSHYCQACAYK 132 (199)
Q Consensus 110 kCkiCK~kVhQ--------~G~kYCQ~CAYk 132 (199)
+|..|++.+.. +|..||..|-.+
T Consensus 32 ~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~ 62 (114)
T 1j2o_A 32 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 62 (114)
T ss_dssp CCSSSCSCCCCSSSCCCCBTTBCCCHHHHHH
T ss_pred cccccCCchhcCCCeeEEECCeeechHHHHH
Confidence 78888877742 467899888665
No 238
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.03 E-value=4.1 Score=26.66 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=27.9
Q ss_pred cccchhhcccc--------cCCCcCCcccccc----cCCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVH--------QVGSHYCQACAYK----KGEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVh--------Q~G~kYCQ~CAYk----KGiCAMCGk~~~~~ 146 (199)
..|.||...+. .=||.||..|..+ ...|.+|.+++..-
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 47888877653 2367889999753 67899999887653
No 239
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=51.91 E-value=2.1 Score=28.34 Aligned_cols=23 Identities=26% Similarity=0.775 Sum_probs=18.1
Q ss_pred CcccchhhcccccCCCcCCcccccc
Q psy11904 108 FESCKICRQKVHQVGSHYCQACAYK 132 (199)
Q Consensus 108 ~skCkiCK~kVhQ~G~kYCQ~CAYk 132 (199)
...|..|+..+.| | -.|..|.|.
T Consensus 14 ~t~C~~C~k~i~~-G-~kC~~Ck~~ 36 (49)
T 1kbe_A 14 SQVCNVCQKSMIF-G-VKCKHCRLK 36 (49)
T ss_dssp SCCCSSSCCSSCC-E-EEETTTTEE
T ss_pred CcCccccCceeEC-c-CCCCCCCCc
Confidence 4689999999987 5 678888775
No 240
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=51.37 E-value=11 Score=33.65 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=30.4
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++.+ |++||+|++ |....+. .+|...+|....| =+|.+.+.|.
T Consensus 293 spA~~aG-L~~GDvI~~--vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~ 340 (451)
T 3pv2_A 293 SPAELAG-LKAGDIITQ--INDTKITQATQVKTTISLLRVGSTVKIIVERD 340 (451)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECCSHHHHHHHHHTSCTTCEEEEEEEET
T ss_pred ChHHHcC-CCCCCEEEE--ECCEEcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 6788777 999999999 5554443 2445555555444 4677777763
No 241
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=51.15 E-value=5.2 Score=24.49 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=25.1
Q ss_pred cccchhhccccc---------CCCcCCcccccc----cCCcccCCCCCC
Q psy11904 109 ESCKICRQKVHQ---------VGSHYCQACAYK----KGEHLVLVTADP 144 (199)
Q Consensus 109 skCkiCK~kVhQ---------~G~kYCQ~CAYk----KGiCAMCGk~~~ 144 (199)
..|.||...+.. =||.||..|..+ ...|.+|...++
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467777665422 377899999753 378999987764
No 242
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=50.83 E-value=11 Score=32.34 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=28.9
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||++.+ |++||.|++ |....+. .+|-..+|....| =+|.+++.|.
T Consensus 274 spA~~aG-L~~GDvI~~--ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~ 321 (345)
T 3stj_A 274 SGSAKAG-VKAGDIITS--LNGKPLNSFAELRSRIATTEPGTKVKLGLLRN 321 (345)
T ss_dssp SHHHHHT-CCTTCEECE--ETTEECSCHHHHHHHHHTSCTTCEEEEEEEET
T ss_pred ChHHHcC-CCCCCEEEE--ECCEECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 5665544 899999999 5555443 3444556655444 3577777763
No 243
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=50.83 E-value=11 Score=31.75 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=27.0
Q ss_pred CccccccccCCCCeeeEEEEeecccch-hhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMVY-EDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~y-EDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+ |++||.|++ |....+.. +|...+|+..+ .|.+.+.|
T Consensus 267 spA~~aG-l~~GDvI~~--ing~~v~~~~~l~~~l~~~~--~v~l~v~R 310 (325)
T 1lcy_A 267 SPAHRAG-LRPGDVILA--IGEQMVQNAEDVYEAVRTQS--QLAVQIRR 310 (325)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECCSHHHHHHHHTTCS--SEEEEEEE
T ss_pred ChHHHCC-CCCCCEEEE--ECCEEcCCHHHHHHHHhCCC--eEEEEEEE
Confidence 5555544 899999998 55554433 45566666543 46666665
No 244
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.71 E-value=11 Score=25.07 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=16.1
Q ss_pred CCcCCccccccc--CCcccCCCCCC
Q psy11904 122 GSHYCQACAYKK--GEHLVLVTADP 144 (199)
Q Consensus 122 G~kYCQ~CAYkK--GiCAMCGk~~~ 144 (199)
|..||..|-++. ..|+.|++++.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec
Confidence 557888886653 57888887664
No 245
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=48.41 E-value=3.5 Score=29.78 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=28.1
Q ss_pred cccchhhccccc-----CCCcCCcccccc----c-CCcccCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK----K-GEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk----K-GiCAMCGk~~~~ 145 (199)
-.|.||...+.. =||.||..|..+ . ..|.+|..++..
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 479999765443 388899999754 2 389999988875
No 246
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=47.90 E-value=6.3 Score=26.62 Aligned_cols=25 Identities=20% Similarity=0.571 Sum_probs=18.5
Q ss_pred cccchhhcccccCCCcCCccc-ccccC
Q psy11904 109 ESCKICRQKVHQVGSHYCQAC-AYKKG 134 (199)
Q Consensus 109 skCkiCK~kVhQ~G~kYCQ~C-AYkKG 134 (199)
=+|..|+ +.+.+-.-||+.| |.+++
T Consensus 14 WkC~~C~-~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 14 WKCTSCN-EMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp EECTTTC-CEECSSCSSCTTTCCCCSS
T ss_pred Eeccccc-ccCCCccchhhHHHhhccc
Confidence 3899999 5566678999999 55443
No 247
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=47.78 E-value=4.2 Score=31.25 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=28.4
Q ss_pred cccchhhccccc-----CCCcCCcccccc-----cCCcccCCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGEHLVLVTADPEK 146 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYk-----KGiCAMCGk~~~~~ 146 (199)
-.|.||...+.. =||.||..|... ...|.+|...++..
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 379999875543 388899999642 23799999887764
No 248
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.51 E-value=19 Score=23.33 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=19.6
Q ss_pred cccchhhccccc---------CCCcCCcccccccCCcccCCCCCC
Q psy11904 109 ESCKICRQKVHQ---------VGSHYCQACAYKKGEHLVLVTADP 144 (199)
Q Consensus 109 skCkiCK~kVhQ---------~G~kYCQ~CAYkKGiCAMCGk~~~ 144 (199)
.+|..|.+.|.. .+..|=..|- .|+.|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF----~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF----NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC----BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC----EeccCCCcCC
Confidence 478888877763 1333333343 5778888775
No 249
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=46.32 E-value=6.6 Score=26.02 Aligned_cols=35 Identities=20% Similarity=0.479 Sum_probs=24.9
Q ss_pred ccchhhccccc------CCCcCCc-ccccc--cCCcccCCCCCC
Q psy11904 110 SCKICRQKVHQ------VGSHYCQ-ACAYK--KGEHLVLVTADP 144 (199)
Q Consensus 110 kCkiCK~kVhQ------~G~kYCQ-~CAYk--KGiCAMCGk~~~ 144 (199)
+|..|+..+.. +|.-||. .|-.+ .-.|+.||.++.
T Consensus 29 ~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 29 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp BCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 67778776643 3667999 58765 358999997654
No 250
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.80 E-value=2.7 Score=32.95 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=7.7
Q ss_pred hhhhhhhhcccC
Q psy11904 54 IMVCSKCEKKLG 65 (199)
Q Consensus 54 ~MVC~KCEKKL~ 65 (199)
..+|.+|.+.+.
T Consensus 5 ~~~C~~C~~~I~ 16 (188)
T 1rut_X 5 WKRCAGCGGKIA 16 (188)
T ss_dssp CCBBTTTCCBCC
T ss_pred CCcCccCCCEeC
Confidence 356777876554
No 251
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=45.80 E-value=5.5 Score=36.18 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=29.3
Q ss_pred Ccccchhhccccc-----CCCcCCccccc-----ccCCcccCCCCCCC
Q psy11904 108 FESCKICRQKVHQ-----VGSHYCQACAY-----KKGEHLVLVTADPE 145 (199)
Q Consensus 108 ~skCkiCK~kVhQ-----~G~kYCQ~CAY-----kKGiCAMCGk~~~~ 145 (199)
...|.||-..... =||.+|..|.. ....|++|..+...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3589999765433 38899999976 46899999977654
No 252
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=45.23 E-value=15 Score=34.38 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=31.0
Q ss_pred CccccccccCCCCeeeEEEEeecccchhhHHhhhhcccc-ceEEEEEeee
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMVYEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
|||.+.+ |++||+|++ |....+..+|-..+|+...| =.|.+.+.|.
T Consensus 507 spA~~AG-L~~GD~I~a--InG~~v~~~~l~~~l~~~~~g~~v~l~v~R~ 553 (597)
T 4fgm_A 507 ESAYHAG-LSAGDKIIA--IDHLQATEQSVKRILERYIPGDTVTIHAFRR 553 (597)
T ss_dssp SHHHHHT-CCTTCEEEE--ETTEECCTTTHHHHHTTCCTTCEEEEEEEET
T ss_pred ChHHHCC-CCCCCEEEE--ECCEECCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 5665554 899999999 66665555565666665444 3677777764
No 253
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=42.95 E-value=5.1 Score=33.71 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccccceEEEEEeeehhhhhhhhhhhcccCcccccCCCC
Q psy11904 2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASPYEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWK 74 (199)
Q Consensus 2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~PYkv~~~l~reIyf~MVC~KCEKKL~KLaTPD~wK 74 (199)
|||.+.+ |++||+|++ |....+. .+|...+|+..+ .|.+.+.|. ++.+.--+||..|.
T Consensus 265 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~l~~~~--~v~l~v~R~----------g~~~~~~v~p~~~~ 323 (332)
T 3num_A 265 TPAEAGG-LKENDVIIS--INGQSVVSANDVSDVIKRES--TLNMVVRRG----------NEDIMITVIPEEID 323 (332)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CChHHcC-CCCCCEEEE--ECCEECCCHHHHHHHHhCCC--eEEEEEEEC----------CEEEEEEEEEeeec
Confidence 5666554 899999998 5544443 344455555432 356666653 22333346776654
No 254
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.72 E-value=12 Score=24.79 Aligned_cols=23 Identities=4% Similarity=-0.395 Sum_probs=17.3
Q ss_pred CCcCCccccccc--CCcccCCCCCC
Q psy11904 122 GSHYCQACAYKK--GEHLVLVTADP 144 (199)
Q Consensus 122 G~kYCQ~CAYkK--GiCAMCGk~~~ 144 (199)
|..||..|-++. ..|+.|+++..
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~ 26 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVL 26 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC
T ss_pred CCccchhHHhhhcCCccccCCCeec
Confidence 457888887664 47999998765
No 255
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=42.63 E-value=5.2 Score=28.24 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=27.1
Q ss_pred cccchhhcccc------cCCCcCCcccccc-----cCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVH------QVGSHYCQACAYK-----KGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVh------Q~G~kYCQ~CAYk-----KGiCAMCGk~~~~ 145 (199)
-.|.||...+. .=||.||..|..+ +..|.+|..+++.
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 47888876432 2388899999753 2589999988753
No 256
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.61 E-value=13 Score=24.74 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=6.0
Q ss_pred cccchhhcccc
Q psy11904 109 ESCKICRQKVH 119 (199)
Q Consensus 109 skCkiCK~kVh 119 (199)
.+|..|.+.|.
T Consensus 16 ~~C~~C~~~I~ 26 (81)
T 1x6a_A 16 EFCHGCSLLMT 26 (81)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCccCCCCcC
Confidence 35666665544
No 257
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=42.48 E-value=7.6 Score=26.96 Aligned_cols=26 Identities=31% Similarity=0.702 Sum_probs=19.6
Q ss_pred cccchhhcccccCCCcCCccc-ccccCC
Q psy11904 109 ESCKICRQKVHQVGSHYCQAC-AYKKGE 135 (199)
Q Consensus 109 skCkiCK~kVhQ~G~kYCQ~C-AYkKGi 135 (199)
=+|..|+ +.+.+-.-||+.| |.+++-
T Consensus 12 WkC~~C~-k~N~Pl~ryC~rCwaLRk~W 38 (53)
T 2cr8_A 12 WQCTECK-KFNSPSKRYCFRCWALRKDW 38 (53)
T ss_dssp EECSSSC-CEECSSCCBCTTTCCBCCCC
T ss_pred eeccccc-ccCCCccchhHHHHHhhccc
Confidence 3899999 5555577999999 666654
No 258
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=42.31 E-value=5.3 Score=31.22 Aligned_cols=27 Identities=26% Similarity=0.731 Sum_probs=20.1
Q ss_pred CcccCcccchhhcccccCCCcCCcccc
Q psy11904 104 YTQKFESCKICRQKVHQVGSHYCQACA 130 (199)
Q Consensus 104 Y~~~~skCkiCK~kVhQ~G~kYCQ~CA 130 (199)
|+.+..+|.+|....-...+.||..|-
T Consensus 53 ~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 53 FGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp TSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred CCCcCCceEEcCCCCCcccceehHhhh
Confidence 444567999999665555689999884
No 259
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=40.50 E-value=12 Score=25.77 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=28.6
Q ss_pred cccchhhccccc-----CCCc-CCcccccccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSH-YCQACAYKKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~k-YCQ~CAYkKGiCAMCGk~~~~ 145 (199)
..|.||...... =||. +|..|+..--.|.+|-.+...
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence 479999764432 3666 899999988899999987654
No 260
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=39.89 E-value=6.2 Score=27.42 Aligned_cols=37 Identities=5% Similarity=-0.133 Sum_probs=26.5
Q ss_pred cccchhhccc-----ccCCCcCCccccc----ccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKV-----HQVGSHYCQACAY----KKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kV-----hQ~G~kYCQ~CAY----kKGiCAMCGk~~~~ 145 (199)
-.|.||..-. ...|+.||..|-- ..+.|.+||.+++.
T Consensus 15 ~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 15 FRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred eECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3677777532 2349999999932 35799999988764
No 261
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=39.41 E-value=26 Score=32.93 Aligned_cols=45 Identities=18% Similarity=0.028 Sum_probs=28.4
Q ss_pred Cccccccc-cCCCCeeeEEEEeecccch-hhHHhhhhccccceEEEEEee
Q psy11904 2 SHCAETWA-LNNGDRITSVRISFRHMVY-EDALTILSYASPYEVQIETEK 49 (199)
Q Consensus 2 s~a~~~~~-l~~GD~i~s~ti~F~n~~y-EDAl~iL~~a~PYkv~~~l~r 49 (199)
|||++.+. |+ ||+|++ |....+.. +|+..+|.-..--+|.+.+.|
T Consensus 767 spa~~ag~~l~-GD~I~~--i~g~~~~~~~~~~~~~~~~~g~~v~l~v~r 813 (1045)
T 1k32_A 767 SPIFEYGIDPT-GYLIED--IDGETVGAGSNIYRVLSEKAGTSARIRLSG 813 (1045)
T ss_dssp CGGGGGTCCCT-TCEEEE--ETTEECBTTBCHHHHHHTTTTSEEEEEEEC
T ss_pred ChHHHCCCCcC-CCEEEE--ECCEEccchhhHHHhhcCCCCCEEEEEEEC
Confidence 78888884 89 999998 55443322 255666655433456666655
No 262
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=39.24 E-value=14 Score=32.44 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=30.3
Q ss_pred cccchhhcccc-----cCCCc-CCcccccccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKVH-----QVGSH-YCQACAYKKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kVh-----Q~G~k-YCQ~CAYkKGiCAMCGk~~~~ 145 (199)
..|.||-.... .=||. +|..|+..-..|.+|-.++..
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence 48999987543 44888 999999999999999987754
No 263
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=39.22 E-value=23 Score=30.05 Aligned_cols=37 Identities=30% Similarity=0.267 Sum_probs=24.8
Q ss_pred CCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeee
Q psy11904 12 NGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKE 50 (199)
Q Consensus 12 ~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~re 50 (199)
.||.|++ |....+. .+|...+|....| =.|.+++.|.
T Consensus 282 ~GDvI~~--ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~ 320 (348)
T 3qo6_A 282 LGDIITS--VNGTKVSNGSDLYRILDQCKVGDEVTVEVLRG 320 (348)
T ss_dssp CCCEECE--ETTBCCSSSHHHHHHHTTCCTTCEEEEEEECS
T ss_pred CCCEEEE--ECCEEeCCHHHHHHHHHhCCCcCEEEEEEEEC
Confidence 4999999 6555544 3566777765554 3678888764
No 264
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.01 E-value=16 Score=24.28 Aligned_cols=23 Identities=9% Similarity=-0.114 Sum_probs=14.0
Q ss_pred CCcCCcccccc--cCCcccCCCCCC
Q psy11904 122 GSHYCQACAYK--KGEHLVLVTADP 144 (199)
Q Consensus 122 G~kYCQ~CAYk--KGiCAMCGk~~~ 144 (199)
|..||..|-++ ..+|+.|+++..
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC
T ss_pred CceechhHhCcccCCcCccCCCccc
Confidence 45677777544 246777776655
No 265
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.59 E-value=17 Score=24.07 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=17.4
Q ss_pred CCcCCccccccc--CCcccCCCCCC
Q psy11904 122 GSHYCQACAYKK--GEHLVLVTADP 144 (199)
Q Consensus 122 G~kYCQ~CAYkK--GiCAMCGk~~~ 144 (199)
++.||..|-++. .+|+.|++++.
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~ 26 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIV 26 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCC
T ss_pred CCcCchhHHccccCCcCccCCcccc
Confidence 457898887664 48999998664
No 266
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.51 E-value=19 Score=29.96 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=28.2
Q ss_pred CcccchhhcccccCCCcCCccc--------ccc------cCCcccCCCCCCCC
Q psy11904 108 FESCKICRQKVHQVGSHYCQAC--------AYK------KGEHLVLVTADPEK 146 (199)
Q Consensus 108 ~skCkiCK~kVhQ~G~kYCQ~C--------AYk------KGiCAMCGk~~~~~ 146 (199)
...|.+|+.-|.+ | .-|+.| .++ ...|+.|+...+-.
T Consensus 180 i~~C~iC~~iv~~-g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQ-G-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSS-C-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhC-C-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 5789999999998 4 888875 332 34899999876653
No 267
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.98 E-value=31 Score=22.92 Aligned_cols=23 Identities=4% Similarity=-0.081 Sum_probs=11.3
Q ss_pred CCcCCcccccc-cCCcccCCCCCC
Q psy11904 122 GSHYCQACAYK-KGEHLVLVTADP 144 (199)
Q Consensus 122 G~kYCQ~CAYk-KGiCAMCGk~~~ 144 (199)
|..||..|-+. ..+|+.|+++..
T Consensus 3 g~~yC~~~y~~~~~~C~~C~~~I~ 26 (81)
T 2dlo_A 3 SGSSGEGCYVATLEKCATCSQPIL 26 (81)
T ss_dssp CCCCCCCCCCSSCCBCTTTCCBCC
T ss_pred CCEECHHHhhcCCCccccCCCeec
Confidence 34555555431 235666665543
No 268
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.75 E-value=24 Score=23.22 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=17.8
Q ss_pred cccchhhccccc---------CCCcCCcccccccCCcccCCCCCC
Q psy11904 109 ESCKICRQKVHQ---------VGSHYCQACAYKKGEHLVLVTADP 144 (199)
Q Consensus 109 skCkiCK~kVhQ---------~G~kYCQ~CAYkKGiCAMCGk~~~ 144 (199)
.+|..|.+.|.. .+..|=..|- .|+.|++++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF----~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF----NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC----BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC----ChhhCCCcCC
Confidence 477777776663 1222222222 5777887775
No 269
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.44 E-value=20 Score=17.51 Aligned_cols=12 Identities=0% Similarity=-0.399 Sum_probs=9.0
Q ss_pred CcccCCCCCCCC
Q psy11904 135 EHLVLVTADPEK 146 (199)
Q Consensus 135 iCAMCGk~~~~~ 146 (199)
.|..||+.+..+
T Consensus 4 ~C~~C~~~f~~~ 15 (29)
T 2m0e_A 4 KCPHCDKKFNQV 15 (29)
T ss_dssp CCSSCCCCCCTT
T ss_pred cCCCCCcccCCH
Confidence 588888887654
No 270
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=33.03 E-value=9.1 Score=27.30 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=28.0
Q ss_pred Ccccchhhc-ccccCCCcCCcccccccCCcccCCCCCCCCCCc
Q psy11904 108 FESCKICRQ-KVHQVGSHYCQACAYKKGEHLVLVTADPEKGDK 149 (199)
Q Consensus 108 ~skCkiCK~-kVhQ~G~kYCQ~CAYkKGiCAMCGk~~~~~~~~ 149 (199)
...|.||.. +......|-|..|--+ .||.||--.+-++.+
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk~r--~CaRCGg~v~lr~~k 49 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQTK--FCARCGGRVSLRSNK 49 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTCCE--ECTTSEEEEESSTTC
T ss_pred cchhhhhccceeccCCCccccccCCe--eecccCCEeeecCCe
Confidence 358999955 6666566778777544 899999766654443
No 271
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=32.24 E-value=9.2 Score=26.47 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=28.1
Q ss_pred Ccccchhhccccc--------CCCcCCccccc----ccCCcccCCCCCCC
Q psy11904 108 FESCKICRQKVHQ--------VGSHYCQACAY----KKGEHLVLVTADPE 145 (199)
Q Consensus 108 ~skCkiCK~kVhQ--------~G~kYCQ~CAY----kKGiCAMCGk~~~~ 145 (199)
...|.||-..+.. =||.||..|.. ..+.|.+|-..++.
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4579999765433 37789999975 47899999987653
No 272
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=31.49 E-value=31 Score=24.68 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=24.2
Q ss_pred cccchhhcccccCCCcCCcccccccCCcccCCCCCCCCCCcceeeecceEEEEecCCCCCC
Q psy11904 109 ESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDKFALISGEHLVLVTADPEKGD 169 (199)
Q Consensus 109 skCkiCK~kVhQ~G~kYCQ~CAYkKGiCAMCGk~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 169 (199)
..|+.|+.-|.. -.|..||-. +.-+-.+| .++-.|||+-.
T Consensus 12 ~AC~~C~~~~~~-------------~~CPnC~s~-----~tS~~w~G---~ViI~dPe~S~ 51 (69)
T 1ryq_A 12 KACRHCHYITSE-------------DRCPVCGSR-----DLSEEWFD---LVIIVDVENSE 51 (69)
T ss_dssp EEETTTCBEESS-------------SSCTTTCCC-----CEESCEEE---EEEESCGGGCH
T ss_pred hhHHhCCccccC-------------CcCCCccCC-----ccCCccce---EEEEeCCchhH
Confidence 479999986633 268888832 23344455 24445888654
No 273
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.12 E-value=41 Score=22.30 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=4.4
Q ss_pred ccchhhccc
Q psy11904 110 SCKICRQKV 118 (199)
Q Consensus 110 kCkiCK~kV 118 (199)
+|..|...|
T Consensus 17 ~C~~C~~~I 25 (81)
T 1v6g_A 17 RCFSCDQFI 25 (81)
T ss_dssp BCTTTCCBC
T ss_pred cCccccCEe
Confidence 455555444
No 274
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=30.92 E-value=12 Score=26.91 Aligned_cols=37 Identities=3% Similarity=-0.249 Sum_probs=27.0
Q ss_pred cccchhhccc-----ccCC-CcCCccccc----ccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKV-----HQVG-SHYCQACAY----KKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kV-----hQ~G-~kYCQ~CAY----kKGiCAMCGk~~~~ 145 (199)
-.|.||..-. ...| +.||..|-. ..+.|.+|+.+++.
T Consensus 23 ~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 23 FLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3788887632 2347 899999942 25789999988875
No 275
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=30.88 E-value=25 Score=22.66 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=18.0
Q ss_pred cccchhhcccccC-------CCcCC--cccccccCCcccCCCCCC
Q psy11904 109 ESCKICRQKVHQV-------GSHYC--QACAYKKGEHLVLVTADP 144 (199)
Q Consensus 109 skCkiCK~kVhQ~-------G~kYC--Q~CAYkKGiCAMCGk~~~ 144 (199)
.+|..|.+.|... |..|= ..| =.|+.|+++++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~C----F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTEC----FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTT----SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCC----EECCCCCCcCC
Confidence 4677777777642 21222 222 25778888775
No 276
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.74 E-value=25 Score=23.79 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=18.4
Q ss_pred CCCcCCccccc----ccCCcccCCCCCCC
Q psy11904 121 VGSHYCQACAY----KKGEHLVLVTADPE 145 (199)
Q Consensus 121 ~G~kYCQ~CAY----kKGiCAMCGk~~~~ 145 (199)
=||.|+..|.. ....|.+|-.++..
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 46778888864 56789999877653
No 277
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=34.65 E-value=12 Score=18.55 Aligned_cols=12 Identities=0% Similarity=-0.490 Sum_probs=8.7
Q ss_pred CcccCCCCCCCC
Q psy11904 135 EHLVLVTADPEK 146 (199)
Q Consensus 135 iCAMCGk~~~~~ 146 (199)
.|..||+.+..+
T Consensus 4 ~C~~C~k~f~~~ 15 (26)
T 2lvu_A 4 VCERCGKRFVQS 15 (26)
Confidence 578888877654
No 278
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.92 E-value=45 Score=21.38 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=21.2
Q ss_pred CcccchhhcccccC-------CCcCCcccccccCCcccCCCCCCC
Q psy11904 108 FESCKICRQKVHQV-------GSHYCQACAYKKGEHLVLVTADPE 145 (199)
Q Consensus 108 ~skCkiCK~kVhQ~-------G~kYCQ~CAYkKGiCAMCGk~~~~ 145 (199)
..+|..|.+.|... |..|=..|- .|+.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF----~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCF----ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTT----CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCC----cccccCCccCC
Confidence 35888888877642 223333332 58889988764
No 279
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.65 E-value=46 Score=21.78 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=20.7
Q ss_pred CcccchhhcccccC------CCcCCcccccccCCcccCCCCCCC
Q psy11904 108 FESCKICRQKVHQV------GSHYCQACAYKKGEHLVLVTADPE 145 (199)
Q Consensus 108 ~skCkiCK~kVhQ~------G~kYCQ~CAYkKGiCAMCGk~~~~ 145 (199)
..+|..|.+.|... +..|=..|- .|+.|++++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF----~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL----KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC----BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC----CCCCCCCccCC
Confidence 45888888888731 222222332 57889888863
No 280
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.25 E-value=14 Score=18.62 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=9.3
Q ss_pred CcccCCCCCCCCC
Q psy11904 135 EHLVLVTADPEKG 147 (199)
Q Consensus 135 iCAMCGk~~~~~~ 147 (199)
.|..||+.+..+.
T Consensus 4 ~C~~C~k~f~~~~ 16 (29)
T 2lvt_A 4 QCVMCGKAFTQAS 16 (29)
Confidence 5888888876543
No 281
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=26.07 E-value=31 Score=23.12 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=14.0
Q ss_pred CcccCCCCCCCCCCcceeeecc
Q psy11904 135 EHLVLVTADPEKGDKFALISGE 156 (199)
Q Consensus 135 iCAMCGk~~~~~~~~~~~i~g~ 156 (199)
.|+-|||+-. +..+||+|.
T Consensus 13 ~CSFCGk~~~---ev~~LIaGp 31 (51)
T 2ds5_A 13 YCSFCGKSQH---EVRKLIAGP 31 (51)
T ss_dssp BCTTTCCBTT---TSSCEEECS
T ss_pred EecCCCCCHH---HhcccCCCC
Confidence 5999998543 456788884
No 282
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=25.91 E-value=24 Score=26.39 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=15.4
Q ss_pred cccchhhHHhhhhccccceE
Q psy11904 24 RHMVYEDALTILSYASPYEV 43 (199)
Q Consensus 24 ~n~~yEDAl~iL~~a~PYkv 43 (199)
++|.+++||.+|++ .|++.
T Consensus 25 rG~~v~~Al~~L~~-~pkka 43 (110)
T 1i4j_A 25 RGKSLEEARNILRY-TNKRG 43 (110)
T ss_dssp TTCBHHHHHHHHHH-CCCTT
T ss_pred cCCcHHHHHHHHHH-CCHHH
Confidence 67999999999998 35544
No 283
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.54 E-value=62 Score=20.73 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=19.8
Q ss_pred cccchhhcccccC-------CCcCCcccccccCCcccCCCCCC
Q psy11904 109 ESCKICRQKVHQV-------GSHYCQACAYKKGEHLVLVTADP 144 (199)
Q Consensus 109 skCkiCK~kVhQ~-------G~kYCQ~CAYkKGiCAMCGk~~~ 144 (199)
.+|..|.+.|... +..|=..|- .|+.|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF----~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCF----VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTC----BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCC----cccccCCcCC
Confidence 5788888766531 233444443 5788888884
No 284
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.54 E-value=31 Score=16.94 Aligned_cols=12 Identities=0% Similarity=-0.133 Sum_probs=8.9
Q ss_pred CcccCCCCCCCC
Q psy11904 135 EHLVLVTADPEK 146 (199)
Q Consensus 135 iCAMCGk~~~~~ 146 (199)
.|..||+.+...
T Consensus 4 ~C~~C~k~f~~~ 15 (30)
T 1klr_A 4 QCQYCEFRSADS 15 (30)
T ss_dssp CCSSSSCCCSCS
T ss_pred cCCCCCCccCCH
Confidence 588888887653
No 285
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.39 E-value=58 Score=20.83 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=20.4
Q ss_pred CcccchhhcccccC-------CCcCCcccccccCCcccCCCCCCC
Q psy11904 108 FESCKICRQKVHQV-------GSHYCQACAYKKGEHLVLVTADPE 145 (199)
Q Consensus 108 ~skCkiCK~kVhQ~-------G~kYCQ~CAYkKGiCAMCGk~~~~ 145 (199)
..+|..|.+.|... |..|=..|- .|+.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF----~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCF----LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTC----BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCcccC----eECCCCCcCCC
Confidence 35788888877642 223333332 57888888764
No 286
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=30.94 E-value=15 Score=18.36 Aligned_cols=12 Identities=0% Similarity=-0.216 Sum_probs=8.8
Q ss_pred CcccCCCCCCCC
Q psy11904 135 EHLVLVTADPEK 146 (199)
Q Consensus 135 iCAMCGk~~~~~ 146 (199)
.|..||+.+...
T Consensus 5 ~C~~C~k~f~~~ 16 (30)
T 2lvr_A 5 VCIHCQRQFADP 16 (30)
Confidence 578888887654
No 287
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=25.00 E-value=16 Score=26.35 Aligned_cols=37 Identities=5% Similarity=-0.123 Sum_probs=27.0
Q ss_pred cccchhhccc-----ccCCCcCCccccc----ccCCcccCCCCCCC
Q psy11904 109 ESCKICRQKV-----HQVGSHYCQACAY----KKGEHLVLVTADPE 145 (199)
Q Consensus 109 skCkiCK~kV-----hQ~G~kYCQ~CAY----kKGiCAMCGk~~~~ 145 (199)
-.|.||..-. ...|+.||..|-. ..+.|.+||.+++.
T Consensus 30 ~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 30 FRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred hCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4788887532 2358999999932 35789999988875
No 288
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=24.79 E-value=26 Score=28.53 Aligned_cols=15 Identities=13% Similarity=0.115 Sum_probs=11.2
Q ss_pred cccCCcccCCCCCCC
Q psy11904 131 YKKGEHLVLVTADPE 145 (199)
Q Consensus 131 YkKGiCAMCGk~~~~ 145 (199)
.+.|.|++||+++..
T Consensus 18 ~Q~g~C~IC~~~l~~ 32 (157)
T 1e7l_A 18 AQNGKCLICQRELNP 32 (157)
T ss_dssp HTTTBCTTTCCBCCS
T ss_pred HhCCcCcccCCcccc
Confidence 356799999988644
No 289
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=24.71 E-value=25 Score=23.42 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=4.1
Q ss_pred ccchhhccc
Q psy11904 110 SCKICRQKV 118 (199)
Q Consensus 110 kCkiCK~kV 118 (199)
+|..|...|
T Consensus 9 ~C~~C~~~I 17 (81)
T 1a7i_A 9 KCGACGRTV 17 (81)
T ss_dssp BCSSSCCBC
T ss_pred cCcCcCccc
Confidence 444444444
No 290
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.49 E-value=39 Score=21.35 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=21.9
Q ss_pred CcccchhhcccccC-------CCcCCcccccccCCcccCCCCCCCC
Q psy11904 108 FESCKICRQKVHQV-------GSHYCQACAYKKGEHLVLVTADPEK 146 (199)
Q Consensus 108 ~skCkiCK~kVhQ~-------G~kYCQ~CAYkKGiCAMCGk~~~~~ 146 (199)
..+|..|.+.|... |..|=..|- .|+.|++++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF----~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCF----VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTS----SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCC----cccCCCCCCCCC
Confidence 45898998877642 222323333 588999888654
No 291
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=23.60 E-value=19 Score=30.47 Aligned_cols=30 Identities=30% Similarity=0.827 Sum_probs=21.1
Q ss_pred ccCCCcccCcccchhhccccc-----CCCcCCccc
Q psy11904 100 RFNPYTQKFESCKICRQKVHQ-----VGSHYCQAC 129 (199)
Q Consensus 100 R~nPY~~~~skCkiCK~kVhQ-----~G~kYCQ~C 129 (199)
.+.-|+.....|..|.+.|.. -+.+||..|
T Consensus 237 ~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~C 271 (273)
T 3u6p_A 237 HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRC 271 (273)
T ss_dssp CCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred eEEEeCCCcCCCCCCCCeEEEEEECCCCeEECCCC
Confidence 445666666789999887642 346788888
No 292
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.54 E-value=27 Score=17.03 Aligned_cols=11 Identities=9% Similarity=-0.236 Sum_probs=8.3
Q ss_pred CcccCCCCCCC
Q psy11904 135 EHLVLVTADPE 145 (199)
Q Consensus 135 iCAMCGk~~~~ 145 (199)
.|..||+.+..
T Consensus 3 ~C~~C~k~f~~ 13 (27)
T 1znf_A 3 KCGLCERSFVE 13 (27)
T ss_dssp BCSSSCCBCSS
T ss_pred cCCCCCCcCCC
Confidence 47888988765
No 293
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=23.45 E-value=36 Score=24.23 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=14.1
Q ss_pred CcccCCCCCCCCCCcceeeecc
Q psy11904 135 EHLVLVTADPEKGDKFALISGE 156 (199)
Q Consensus 135 iCAMCGk~~~~~~~~~~~i~g~ 156 (199)
.|+-|||+-. +..+||+|.
T Consensus 20 ~CSFCGK~e~---eV~~LIaGp 38 (67)
T 1ovx_A 20 YCSFCGKSQH---EVRKLIAGP 38 (67)
T ss_dssp CCTTTCCCTT---TSSSEEECS
T ss_pred EecCCCCCHH---HHcccCCCC
Confidence 6999998543 456788884
No 294
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=23.44 E-value=27 Score=26.08 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=14.4
Q ss_pred cccchhhHHhhhhccccce
Q psy11904 24 RHMVYEDALTILSYASPYE 42 (199)
Q Consensus 24 ~n~~yEDAl~iL~~a~PYk 42 (199)
++|.+++||.+|++ .|++
T Consensus 25 rG~~v~~Al~~L~f-~pkk 42 (110)
T 3r8s_S 25 RGKKVSQALDILTY-TNKK 42 (110)
T ss_dssp TTCBHHHHHHHHHH-CCCH
T ss_pred cCCcHHHHHHHHhh-CCHH
Confidence 57899999999996 4444
No 295
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=23.42 E-value=22 Score=30.02 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=22.0
Q ss_pred hccCCCcccCcccchhhcccc-----cCCCcCCcccc
Q psy11904 99 ARFNPYTQKFESCKICRQKVH-----QVGSHYCQACA 130 (199)
Q Consensus 99 ~R~nPY~~~~skCkiCK~kVh-----Q~G~kYCQ~CA 130 (199)
..+.-|+.....|..|.+.|. +-+.+||..|-
T Consensus 226 ~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 226 TRHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred ceEEEcccCCCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 455567766778999987664 33557888874
No 296
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=23.31 E-value=26 Score=26.17 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=14.9
Q ss_pred cccchhhHHhhhhccccceE
Q psy11904 24 RHMVYEDALTILSYASPYEV 43 (199)
Q Consensus 24 ~n~~yEDAl~iL~~a~PYkv 43 (199)
++|.+++||.+|++ .|++.
T Consensus 21 rG~~v~eAl~~L~f-~pkka 39 (110)
T 2ftc_M 21 RGMSIDQALAQLEF-NDKKG 39 (110)
T ss_pred cCCcHHHHHHHHHH-CCHHH
Confidence 57899999999997 34443
No 297
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=22.97 E-value=20 Score=26.31 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=16.7
Q ss_pred CCcCCcccccc----cCCcccCCCCC
Q psy11904 122 GSHYCQACAYK----KGEHLVLVTAD 143 (199)
Q Consensus 122 G~kYCQ~CAYk----KGiCAMCGk~~ 143 (199)
+|.|+..|..+ +..|.||-...
T Consensus 74 ~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 74 NHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 56677778665 78899998764
No 298
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=22.72 E-value=19 Score=29.23 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=27.1
Q ss_pred Ccccchhhccc-----ccCCCcCCcccccc----cC-CcccCCCCCCC
Q psy11904 108 FESCKICRQKV-----HQVGSHYCQACAYK----KG-EHLVLVTADPE 145 (199)
Q Consensus 108 ~skCkiCK~kV-----hQ~G~kYCQ~CAYk----KG-iCAMCGk~~~~ 145 (199)
.-.|.||..-. ...|+.||..|--+ .| .|++||.+++.
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34899998643 34599999999321 24 59999988864
No 299
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.64 E-value=49 Score=21.13 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=18.1
Q ss_pred cccchhhccccc-----CCCcCCcccccccCCcccCCCCCC
Q psy11904 109 ESCKICRQKVHQ-----VGSHYCQACAYKKGEHLVLVTADP 144 (199)
Q Consensus 109 skCkiCK~kVhQ-----~G~kYCQ~CAYkKGiCAMCGk~~~ 144 (199)
.+|..|.+.|.. .+..|-..|- .|+.|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF----~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADCF----VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTTT----BCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCcC----EECCCCCCCC
Confidence 467777776542 1223333332 5778888876
No 300
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=29 Score=18.29 Aligned_cols=11 Identities=0% Similarity=-0.496 Sum_probs=8.3
Q ss_pred CcccCCCCCCC
Q psy11904 135 EHLVLVTADPE 145 (199)
Q Consensus 135 iCAMCGk~~~~ 145 (199)
.|..||+.+..
T Consensus 11 ~C~~C~k~f~~ 21 (36)
T 2elr_A 11 LCDMCGKKFKS 21 (36)
T ss_dssp BCTTTCCBCSS
T ss_pred ecCcCCCCcCc
Confidence 68888887764
No 301
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.04 E-value=41 Score=24.47 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=30.2
Q ss_pred ccccchhhh-hhccCC---CcccCcccchhhccccc--CCCcCCcccccccCCcccCCC
Q psy11904 89 GENKALTAS-KARFNP---YTQKFESCKICRQKVHQ--VGSHYCQACAYKKGEHLVLVT 141 (199)
Q Consensus 89 geNKLLSs~-K~R~nP---Y~~~~skCkiCK~kVhQ--~G~kYCQ~CAYkKGiCAMCGk 141 (199)
+.|-||.-+ |...++ |+ .+.|..|.+.+-- +-+-.|+.|-. .+|.-|+-
T Consensus 4 ~~~eL~elrrkgak~~s~~~~--~r~CarC~~~LG~l~~~g~~C~~Ck~--rVC~~Crv 58 (76)
T 2csz_A 4 GSSGLLEIKRKGAKRGSQHYS--DRTCARCQESLGRLSPKTNTCRGCNH--LVCRDCRI 58 (76)
T ss_dssp CCCCCCCCCCCCSCSCCTTCC--CCBCSSSCCBCSSSCTTTSEETTTTE--ECCTTSEE
T ss_pred hHHHHHHHHHccccCcCcCCC--ccchhhhCccccccccCCCcCcccCh--hhcccccc
Confidence 456666543 233333 43 3789999987743 23567888854 48888873
No 302
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.88 E-value=30 Score=17.01 Aligned_cols=11 Identities=18% Similarity=-0.170 Sum_probs=8.2
Q ss_pred CcccCCCCCCC
Q psy11904 135 EHLVLVTADPE 145 (199)
Q Consensus 135 iCAMCGk~~~~ 145 (199)
.|..||+.+..
T Consensus 4 ~C~~C~~~f~~ 14 (29)
T 1ard_A 4 VCEVCTRAFAR 14 (29)
T ss_dssp BCTTTCCBCSS
T ss_pred ECCCCCcccCC
Confidence 57888887764
No 303
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=21.56 E-value=69 Score=26.71 Aligned_cols=59 Identities=7% Similarity=-0.011 Sum_probs=29.2
Q ss_pred cccchhhcccccCCCcCCcccccccCCcccCCCCCCCCCCc---ceeeecceEEEEecCCCCCCccccc
Q psy11904 109 ESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDK---FALISGEHLVLVTADPEKGDKFAFD 174 (199)
Q Consensus 109 skCkiCK~kVhQ~G~kYCQ~CAYkKGiCAMCGk~~~~~~~~---~~~i~g~~~~~~~~~~~~~~~~~~~ 174 (199)
.-|..|-+.+.... +-..-.|.-||...-...+. ..|..+.++.|+.........+.|-
T Consensus 108 ~fC~~CG~~~~~~~-------~~~~~~C~~C~~~~yp~~~~~viv~v~~~~~vLL~rr~~~~~g~w~lP 169 (269)
T 1vk6_A 108 KYCGYCGHEMYPSK-------TEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVL 169 (269)
T ss_dssp SBCTTTCCBEEECS-------SSSCEEESSSSCEECCCCEEEEEEEEEETTEEEEEEETTTCSSCCBCE
T ss_pred CccccCCCcCccCC-------CceeeeCCCCCCEecCCCCcEEEEEEEeCCEEEEEEecCCCCCcEECC
Confidence 45666666553211 12233566677643333222 2244677777776544334556553
No 304
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.47 E-value=34 Score=17.03 Aligned_cols=12 Identities=8% Similarity=-0.183 Sum_probs=8.5
Q ss_pred CcccCCCCCCCC
Q psy11904 135 EHLVLVTADPEK 146 (199)
Q Consensus 135 iCAMCGk~~~~~ 146 (199)
.|..||+.+..+
T Consensus 4 ~C~~C~k~f~~~ 15 (30)
T 1paa_A 4 ACGLCNRAFTRR 15 (30)
T ss_dssp BCTTTCCBCSSS
T ss_pred CCcccCcccCCh
Confidence 577888877643
No 305
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.41 E-value=59 Score=23.89 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=27.1
Q ss_pred cccchhhcccccCCCcCCcccccccCCcccCCCCCCCCCCcceeeecceEEEEecCC
Q psy11904 109 ESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDKFALISGEHLVLVTADP 165 (199)
Q Consensus 109 skCkiCK~kVhQ~G~kYCQ~CAYkKGiCAMCGk~~~~~~~~~~~i~g~~~~~~~~~~ 165 (199)
-+|+.|.....-.. +..+.|+-||-+. .-+++|+-|.|....-
T Consensus 74 ~~C~~CG~~~e~~~--------~~~~~CP~Cgs~~------~~i~~G~el~i~~ie~ 116 (119)
T 2kdx_A 74 LECKDCSHVFKPNA--------LDYGVCEKCHSKN------VIITQGNEMRLLSLEM 116 (119)
T ss_dssp EECSSSSCEECSCC--------STTCCCSSSSSCC------CEEEESSCCEEEEEEC
T ss_pred EEcCCCCCEEeCCC--------CCCCcCccccCCC------cEEecCCeEEEEEEEE
Confidence 36777766554321 1223899999553 3489999998865443
No 306
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.75 E-value=29 Score=21.58 Aligned_cols=18 Identities=11% Similarity=-0.116 Sum_probs=13.4
Q ss_pred CCcccCCCCCCCCCCcce
Q psy11904 134 GEHLVLVTADPEKGDKFA 151 (199)
Q Consensus 134 GiCAMCGk~~~~~~~~~~ 151 (199)
-.|..||+.+.......|
T Consensus 40 ~~C~~C~k~f~~~~~~~~ 57 (62)
T 1vd4_A 40 FRCTFCHTEVEEDESAMP 57 (62)
T ss_dssp EBCSSSCCBCEECTTCSC
T ss_pred EECCCCCCccccCccccc
Confidence 379999999887665544
No 307
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.64 E-value=20 Score=17.65 Aligned_cols=11 Identities=0% Similarity=-0.299 Sum_probs=7.8
Q ss_pred CcccCCCCCCC
Q psy11904 135 EHLVLVTADPE 145 (199)
Q Consensus 135 iCAMCGk~~~~ 145 (199)
.|..||+.++.
T Consensus 5 ~C~~C~~~f~~ 15 (30)
T 2m0d_A 5 QCDYCGRSFSD 15 (30)
T ss_dssp ECTTTCCEESC
T ss_pred cCCCCCcccCC
Confidence 57788887654
No 308
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.35 E-value=1e+02 Score=20.88 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=21.9
Q ss_pred cCcccchhhccccc-----CCCcCCcccccccCCcccCCCCCCC
Q psy11904 107 KFESCKICRQKVHQ-----VGSHYCQACAYKKGEHLVLVTADPE 145 (199)
Q Consensus 107 ~~skCkiCK~kVhQ-----~G~kYCQ~CAYkKGiCAMCGk~~~~ 145 (199)
...+|..|.+.|.. .|..|-..|- .|+.|++++..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF----~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEF----NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTC----BCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccCC----ccCCCCCCCCC
Confidence 35689999997742 1222333332 67889988874
No 309
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=20.14 E-value=25 Score=29.47 Aligned_cols=29 Identities=21% Similarity=0.610 Sum_probs=19.8
Q ss_pred cCCCcccCcccchhhcccc-----cCCCcCCccc
Q psy11904 101 FNPYTQKFESCKICRQKVH-----QVGSHYCQAC 129 (199)
Q Consensus 101 ~nPY~~~~skCkiCK~kVh-----Q~G~kYCQ~C 129 (199)
++-|+.....|..|.+.|. +-+.+||..|
T Consensus 227 l~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~C 260 (262)
T 1k3x_A 227 FKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 260 (262)
T ss_dssp CSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred EEEcCCCcCCCCCCCCEeEEEEECCCCeEECCCC
Confidence 3467766678999987653 3355788887
No 310
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=20.01 E-value=67 Score=24.31 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=0.0
Q ss_pred CeeeEEEEeecccchhhHHhhhhccccceEEEE
Q psy11904 14 DRITSVRISFRHMVYEDALTILSYASPYEVQIE 46 (199)
Q Consensus 14 D~i~s~ti~F~n~~yEDAl~iL~~a~PYkv~~~ 46 (199)
|.-+.+|++++|..+++||.++-....|.+...
T Consensus 63 ~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~~~ 95 (128)
T 4ar0_A 63 SVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQ 95 (128)
T ss_dssp TCCCEEEEEEEEEEHHHHHHHHHHHHTEEEEEE
T ss_pred CCCceeeEeecCCCHHHHHHHHHHHcCceEEEE
Done!