Query psy11905
Match_columns 317
No_of_seqs 244 out of 809
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 21:57:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2817|consensus 100.0 4.8E-49 1E-53 370.2 19.4 243 20-271 110-381 (394)
2 KOG2659|consensus 100.0 2.8E-39 6.1E-44 287.2 21.6 213 7-220 8-221 (228)
3 KOG0396|consensus 100.0 9.8E-33 2.1E-37 257.4 17.3 234 21-258 111-362 (389)
4 PF10607 CLTH: CTLH/CRA C-term 100.0 2E-29 4.4E-34 212.9 15.1 137 63-203 2-141 (145)
5 COG5109 Uncharacterized conser 99.9 7.1E-21 1.5E-25 174.3 15.9 249 21-283 96-394 (396)
6 smart00757 CRA CT11-RanBPM. pr 99.7 3.7E-16 8E-21 123.3 11.0 92 116-208 2-95 (99)
7 KOG2659|consensus 99.3 2.9E-11 6.3E-16 108.3 14.8 196 67-311 31-227 (228)
8 smart00668 CTLH C-terminal to 99.3 3.5E-12 7.6E-17 90.8 5.7 55 63-117 2-56 (58)
9 KOG0293|consensus 98.4 3.4E-06 7.3E-11 81.1 12.1 163 23-199 15-182 (519)
10 PF08513 LisH: LisH; InterPro 98.2 2.5E-06 5.5E-11 51.5 4.0 27 26-52 1-27 (27)
11 smart00667 LisH Lissencephaly 98.0 1.7E-05 3.6E-10 49.6 4.7 32 24-55 2-33 (34)
12 KOG1477|consensus 97.8 5.3E-06 1.1E-10 82.8 0.5 177 23-200 247-444 (469)
13 PF13445 zf-RING_UBOX: RING-ty 96.6 0.00081 1.8E-08 45.1 1.0 28 231-258 3-30 (43)
14 KOG0275|consensus 96.1 0.074 1.6E-06 50.5 11.1 168 20-203 2-172 (508)
15 smart00757 CRA CT11-RanBPM. pr 93.9 0.076 1.6E-06 41.2 3.8 48 249-296 51-98 (99)
16 PF10607 CLTH: CTLH/CRA C-term 91.0 2.4 5.3E-05 35.1 9.6 40 251-291 105-144 (145)
17 KOG1333|consensus 86.6 4.3 9.3E-05 36.3 8.2 137 26-171 6-154 (241)
18 PF09398 FOP_dimer: FOP N term 81.1 4.9 0.00011 30.7 5.5 33 25-57 18-50 (81)
19 PF10602 RPN7: 26S proteasome 67.0 84 0.0018 27.2 11.6 106 26-131 36-143 (177)
20 PF04494 TFIID_90kDa: WD40 ass 66.8 11 0.00025 31.5 4.8 47 98-147 39-85 (142)
21 PF14559 TPR_19: Tetratricopep 63.4 46 0.001 22.9 7.0 56 72-132 1-56 (68)
22 cd08044 TAF5_NTD2 TAF5_NTD2 is 57.4 15 0.00033 30.3 3.9 49 98-149 28-76 (133)
23 TIGR02552 LcrH_SycD type III s 55.9 94 0.002 24.4 8.4 103 21-131 12-115 (135)
24 PF13934 ELYS: Nuclear pore co 53.9 91 0.002 28.2 8.7 15 42-56 63-77 (226)
25 TIGR03362 VI_chp_7 type VI sec 49.6 1.8E+02 0.0038 27.7 10.2 98 27-126 134-275 (301)
26 PF12569 NARP1: NMDA receptor- 48.9 1.8E+02 0.0038 29.9 10.7 40 13-52 249-288 (517)
27 PF09295 ChAPs: ChAPs (Chs5p-A 42.5 3.3E+02 0.0073 26.9 11.2 97 21-127 164-260 (395)
28 PF04053 Coatomer_WDAD: Coatom 42.5 90 0.0019 31.3 7.3 74 29-125 298-371 (443)
29 KOG2910|consensus 41.4 76 0.0016 28.2 5.7 64 64-129 41-117 (209)
30 PF06794 UPF0270: Uncharacteri 40.4 64 0.0014 23.9 4.4 44 22-77 7-50 (70)
31 KOG4594|consensus 39.8 33 0.00072 32.3 3.5 29 25-53 17-45 (354)
32 KOG1156|consensus 39.5 4.9E+02 0.011 27.6 13.1 130 12-147 130-264 (700)
33 smart00668 CTLH C-terminal to 39.4 51 0.0011 22.3 3.7 30 104-133 4-33 (58)
34 PF12569 NARP1: NMDA receptor- 38.6 2E+02 0.0044 29.5 9.3 91 28-125 196-286 (517)
35 PF07035 Mic1: Colon cancer-as 38.1 1.6E+02 0.0035 25.5 7.4 88 21-127 25-115 (167)
36 PF07729 FCD: FCD domain; Int 37.4 58 0.0013 24.8 4.2 28 61-88 95-122 (125)
37 PF12895 Apc3: Anaphase-promot 36.8 86 0.0019 22.9 4.9 52 68-125 31-82 (84)
38 PF00627 UBA: UBA/TS-N domain; 36.6 54 0.0012 20.5 3.2 19 67-85 17-37 (37)
39 PF04840 Vps16_C: Vps16, C-ter 36.3 3.9E+02 0.0084 25.5 10.8 83 27-126 179-262 (319)
40 KOG2917|consensus 34.7 7.3 0.00016 35.3 -1.6 33 215-247 43-76 (250)
41 KOG0273|consensus 34.5 13 0.00028 37.3 -0.1 36 21-56 1-36 (524)
42 PF12550 GCR1_C: Transcription 33.0 1.1E+02 0.0025 22.8 5.0 64 25-88 8-80 (81)
43 PRK10564 maltose regulon perip 31.7 50 0.0011 31.4 3.4 41 66-114 261-301 (303)
44 KOG1585|consensus 31.4 2.3E+02 0.005 26.6 7.5 74 14-87 179-252 (308)
45 PRK04966 hypothetical protein; 31.4 88 0.0019 23.3 3.9 45 22-78 7-51 (72)
46 PF13838 Clathrin_H_link: Clat 31.3 65 0.0014 23.6 3.2 25 102-126 7-31 (66)
47 PRK11788 tetratricopeptide rep 30.6 4.6E+02 0.0099 24.6 11.1 24 27-50 70-93 (389)
48 PRK00304 hypothetical protein; 30.5 34 0.00074 25.7 1.6 43 23-78 8-50 (75)
49 PF09976 TPR_21: Tetratricopep 29.9 3E+02 0.0065 22.3 10.2 56 32-87 54-110 (145)
50 PF01726 LexA_DNA_bind: LexA D 29.4 69 0.0015 23.1 3.1 33 24-56 7-39 (65)
51 PRK12370 invasion protein regu 29.0 6.3E+02 0.014 25.7 12.4 101 20-129 332-434 (553)
52 PRK15174 Vi polysaccharide exp 28.2 4.7E+02 0.01 27.4 10.3 19 111-129 187-205 (656)
53 PF13432 TPR_16: Tetratricopep 27.1 2E+02 0.0044 19.4 6.6 52 33-86 4-55 (65)
54 KOG0640|consensus 26.7 2.1E+02 0.0045 27.7 6.5 33 23-55 9-41 (430)
55 PF10827 DUF2552: Protein of u 26.4 44 0.00094 24.8 1.5 17 77-93 60-76 (79)
56 cd00194 UBA Ubiquitin Associat 26.3 98 0.0021 19.1 3.1 21 66-86 15-37 (38)
57 KOG0263|consensus 24.3 1.2E+02 0.0027 32.1 4.9 33 23-55 19-51 (707)
58 PF14276 DUF4363: Domain of un 24.2 1.3E+02 0.0028 24.0 4.2 48 63-110 29-76 (121)
59 KOG1156|consensus 24.0 6.9E+02 0.015 26.6 10.1 91 28-125 373-463 (700)
60 PTZ00196 60S ribosomal protein 23.5 1.6E+02 0.0035 23.2 4.4 31 102-132 49-79 (98)
61 PRK12370 invasion protein regu 23.1 8.1E+02 0.018 24.9 14.8 57 28-87 374-431 (553)
62 PF07721 TPR_4: Tetratricopept 23.1 97 0.0021 17.6 2.4 16 71-86 10-25 (26)
63 cd05804 StaR_like StaR_like; a 22.8 6.1E+02 0.013 23.4 11.5 95 30-128 118-213 (355)
64 KOG3060|consensus 22.6 6.5E+02 0.014 23.7 11.6 63 66-133 87-152 (289)
65 KOG0396|consensus 22.4 2.3E+02 0.005 27.8 6.1 62 32-94 159-223 (389)
66 COG3898 Uncharacterized membra 22.4 4.7E+02 0.01 26.3 8.2 79 43-126 101-179 (531)
67 smart00165 UBA Ubiquitin assoc 22.3 1.3E+02 0.0028 18.5 3.0 19 67-85 16-36 (37)
68 TIGR02531 yecD_yerC TrpR-relat 22.0 3E+02 0.0065 21.1 5.6 55 28-84 4-58 (88)
69 PF13371 TPR_9: Tetratricopept 21.4 2.8E+02 0.0061 19.0 7.6 54 72-130 5-58 (73)
70 PF04840 Vps16_C: Vps16, C-ter 20.9 7.3E+02 0.016 23.6 10.0 61 20-87 202-262 (319)
71 KOG0989|consensus 20.5 7.3E+02 0.016 24.1 8.8 61 71-131 217-285 (346)
72 KOG0292|consensus 20.4 25 0.00055 38.1 -0.9 50 26-88 620-669 (1202)
73 PRK10747 putative protoheme IX 20.3 7.8E+02 0.017 23.8 9.6 108 13-126 99-212 (398)
No 1
>KOG2817|consensus
Probab=100.00 E-value=4.8e-49 Score=370.24 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=220.6
Q ss_pred cCCCCHHH-HHHHHHHHHHHhChHHHHHHHHHHhCCCCC--CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCC
Q psy11905 20 TIHIQRSD-MNKLIMNYLVTEGFKEAAEKFQQESGITPS--LDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDND 96 (317)
Q Consensus 20 ~v~~~~~~-Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~--~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~ 96 (317)
++..+... ||.+|+.||+|+|+.|+|+.|++|+|+..+ .....|.++++|.++|+.||+++|++|+..++..|.+.+
T Consensus 110 ~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~ 189 (394)
T KOG2817|consen 110 SVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS 189 (394)
T ss_pred CcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc
Confidence 55555554 599999999999999999999999999865 345799999999999999999999999999999999999
Q ss_pred CcchhhhhHHHHHHHHHhcchH--HHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCC--CCCCcchhccCHHHHHHHH
Q psy11905 97 RYIYFHLQQLHLLELIRENKIE--EALHFAQEQLSESGQSDPDILNELERTMALLAFGE--PMNSPFGDLLNQAHRQKVA 172 (317)
Q Consensus 97 s~LeF~L~~q~fIeLir~~~~~--eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~--~~~spy~~Ll~~~~r~~la 172 (317)
|.|+|.||+++|+++++.|... +||.|||++|+||+.. +.+|||.+|++|.|-. .+.|||.+++++..|.++.
T Consensus 190 s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~---~~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~ 266 (394)
T KOG2817|consen 190 SSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVAD---HLREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELT 266 (394)
T ss_pred ccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccc---hHHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHH
Confidence 9999999999999999998655 9999999999999874 4899999999999865 4789999999999999999
Q ss_pred HHHHHHHHhhcCCCCCch----------HHHHHHHHH--------HHHhhhhhhccCCCCcccCCcccCCCcceEE--ee
Q psy11905 173 SQLNTAILKMEHHESTSP----------RLLNLLKII--------LWSQGELDKKKIEYPKMRAFSQLCGCHSITG--LS 232 (317)
Q Consensus 173 ~~~n~~il~~~g~~~~~p----------~Le~Llk~~--------~w~~~~l~~~~~elP~ei~l~~~~~~hSvf~--vs 232 (317)
.+|.+.+|.++|+|.++| +||.|+|+. +|++ . ++||++|+||.+++|||||+ |+
T Consensus 267 ~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~~~~~W~~--~----deLPveIeL~~~~~fHSvF~CPVl 340 (394)
T KOG2817|consen 267 EEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMELKHGEWNT--K----DELPVEIELGKEYHFHSVFICPVL 340 (394)
T ss_pred HHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHHhccCccc--c----ccCccceeccccccccceeecccc
Confidence 999999999999999888 999999976 4766 3 56999999999999999999 99
Q ss_pred cccccccccccccccccccchhhhhhhhhHHH--hhccCCC
Q psy11905 233 FTQSSYLLSLVSSTCNAATGRYSIKVALNTAI--LKMEHHE 271 (317)
Q Consensus 233 req~t~~~~~~~~~~~~~~~r~~~~~~~n~~~--~~~~~~~ 271 (317)
|||+|++||||.+.|||+..|+....-.|... |||++.+
T Consensus 341 KeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 341 KEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred hhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 99999999999999999999999986556655 7887765
No 2
>KOG2659|consensus
Probab=100.00 E-value=2.8e-39 Score=287.22 Aligned_cols=213 Identities=51% Similarity=0.836 Sum_probs=203.3
Q ss_pred CCCChhHHHHHHhcCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC-CCChhHHHHHHHHHHHHHcCCHHHHHHHH
Q psy11905 7 QSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITP-SLDLNTMENRIMIRDAIQNGRIQEATALV 85 (317)
Q Consensus 7 ~~~~~~~w~~~~~~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~-~~~~e~~~~r~~I~~~I~~gdi~~Al~w~ 85 (317)
+.++.++|++++..+.+.+.++|+||++||+++||.|+|+.|++|+|+.+ ..+.+.+.+|.+|+.+|..|+++.||+.+
T Consensus 8 ~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i 87 (228)
T KOG2659|consen 8 SFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV 87 (228)
T ss_pred ccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999997 78999999999999999999999999999
Q ss_pred HhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCCCCCCcchhccCH
Q psy11905 86 NELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQ 165 (317)
Q Consensus 86 ~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~~~~spy~~Ll~~ 165 (317)
+++.|++++.+..|.|.|++|+||||||.|...+||+|||++++|++..++.++.+++++|++|+|.++..||++.++..
T Consensus 88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~ 167 (228)
T KOG2659|consen 88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQ 167 (228)
T ss_pred HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhhhhhhccCCCCcccCCc
Q psy11905 166 AHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFS 220 (317)
Q Consensus 166 ~~r~~la~~~n~~il~~~g~~~~~p~Le~Llk~~~w~~~~l~~~~~elP~ei~l~ 220 (317)
++|.++|+.+|++|+..+|.. ..|.|+.|+|...|++..+..++...|...++.
T Consensus 168 s~R~kvA~~vN~aiL~~~~~~-~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T KOG2659|consen 168 SLRQKVASEVNSAILASQEHE-SEPKLPFLLKLISWAQEELDREKFSEPHFKDLT 221 (228)
T ss_pred HHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHHHhHhhccccccCCcc
Confidence 999999999999999999998 899999999999999988887676666665554
No 3
>KOG0396|consensus
Probab=100.00 E-value=9.8e-33 Score=257.35 Aligned_cols=234 Identities=19% Similarity=0.220 Sum_probs=205.7
Q ss_pred CCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcch
Q psy11905 21 IHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIY 100 (317)
Q Consensus 21 v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~Le 100 (317)
.+|++..++++|++||.|.||+++|..|.++++++..+|.+.|.+.+.|+++|++|++.|||.||++|+..|.+.+|.||
T Consensus 111 ~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lE 190 (389)
T KOG0396|consen 111 RKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLE 190 (389)
T ss_pred HHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCC-CCCCcchhccCHHHHHHHHHHHHHHH
Q psy11905 101 FHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGE-PMNSPFGDLLNQAHRQKVASQLNTAI 179 (317)
Q Consensus 101 F~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~-~~~spy~~Ll~~~~r~~la~~~n~~i 179 (317)
|.++.|+|||||+.+++.+||+|||+||+|++. .+..+++.+||+|+|+. +..++|..+++..+|+.+++.|...+
T Consensus 191 f~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~---~~~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a 267 (389)
T KOG0396|consen 191 FQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAK---SHKSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEA 267 (389)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhh---hhHHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999998 56899999999999988 55678999999999999999999999
Q ss_pred HhhcCCCCCchHHHHHHHHHHHHhh---hhhhccCC----CCccc--------CCcccCCCcceEE--eecccccccccc
Q psy11905 180 LKMEHHESTSPRLLNLLKIILWSQG---ELDKKKIE----YPKMR--------AFSQLCGCHSITG--LSFTQSSYLLSL 242 (317)
Q Consensus 180 l~~~g~~~~~p~Le~Llk~~~w~~~---~l~~~~~e----lP~ei--------~l~~~~~~hSvf~--vsreq~t~~~~~ 242 (317)
++++|++ ..|+|-.++....-++. .+.+.+++ +|++- +||=...-||..+ +|.+---++|||
T Consensus 268 ~~l~~i~-~~~~L~~~l~~GLsalKTp~c~~~~~~~~~~~CpvC~~~f~~ia~~LPfah~~~S~Lvc~isge~md~~N~P 346 (389)
T KOG0396|consen 268 LKLFGIP-INPALTIYLQAGLSALKTPRCLNDESDNNPNNCPVCCEAFKPIAQALPFAHHAQSRLVCSISGELMDDDNPP 346 (389)
T ss_pred HHHhCCC-CCcHHHHHHHhhhhhcccccccccccCCCCCCCCCcccccchhhhcCCchhhhhhHHHhhccccccCCCCCc
Confidence 9999999 88999999986532221 11122222 33332 5555556677777 999999999999
Q ss_pred cccccccccchhhhhh
Q psy11905 243 VSSTCNAATGRYSIKV 258 (317)
Q Consensus 243 ~~~~~~~~~~r~~~~~ 258 (317)
+...=|.++.-+.+-|
T Consensus 347 ~lfpnG~Vyg~~~L~s 362 (389)
T KOG0396|consen 347 HLFPNGYVYGTKALES 362 (389)
T ss_pred ccccCceeehhHHHHh
Confidence 9999999998887765
No 4
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=99.96 E-value=2e-29 Score=212.87 Aligned_cols=137 Identities=36% Similarity=0.563 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHH
Q psy11905 63 MENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNEL 142 (317)
Q Consensus 63 ~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~ei 142 (317)
|.+|++|+++|++||+++|++|+++++|.|++.++.|+|.|++|+||+||+.|++.+||+|||+++.++.. .+.++|
T Consensus 2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l 78 (145)
T PF10607_consen 2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEEL 78 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999976654 578999
Q ss_pred HHHHHHHccCCCCC---CcchhccCHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHh
Q psy11905 143 ERTMALLAFGEPMN---SPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQ 203 (317)
Q Consensus 143 q~lm~lL~y~~~~~---spy~~Ll~~~~r~~la~~~n~~il~~~g~~~~~p~Le~Llk~~~w~~ 203 (317)
+++|++|+|.++++ +||++++++.+|++||+.||+++|..+|++ ..|.|+.+++...|+.
T Consensus 79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~-~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLP-KESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcC-CCCHHHHHHHHHHHHh
Confidence 99999999999886 899999999999999999999999999999 8999999999998875
No 5
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=99.86 E-value=7.1e-21 Score=174.25 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=194.0
Q ss_pred CCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcc
Q psy11905 21 IHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD-LNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYI 99 (317)
Q Consensus 21 v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~-~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~L 99 (317)
++.+...++.+.-.++.+.|-..-+-.|+.+.|..+... .+.|...+.|.+.|.+.+...-|+|+ +....|.+.++.+
T Consensus 96 f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtes 174 (396)
T COG5109 96 FSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTES 174 (396)
T ss_pred CccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchh
Confidence 334444556667777778888888888999999886554 47899999999999999999999999 6667777777777
Q ss_pred hhhhhHHHHH--HHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCCCC------C---------------
Q psy11905 100 YFHLQQLHLL--ELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPM------N--------------- 156 (317)
Q Consensus 100 eF~L~~q~fI--eLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~~~------~--------------- 156 (317)
++.|..-... -++.. ++++|+.|.++.++.|.. .|..+++.+|-.+.+-+.. +
T Consensus 175 el~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~---kh~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksli 250 (396)
T COG5109 175 ELELYLVSHESLLLIHK-RYDEALRLCFTKLASFVP---KHIQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLI 250 (396)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HhccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhc
Confidence 7766655544 44444 799999999999999986 5688999999998874421 0
Q ss_pred -Cc--chhccCHHHHHHHHHHHHHHHHhhcCCCCCch----------HHHHHHHHH--------HHHhhhhhhccCCCCc
Q psy11905 157 -SP--FGDLLNQAHRQKVASQLNTAILKMEHHESTSP----------RLLNLLKII--------LWSQGELDKKKIEYPK 215 (317)
Q Consensus 157 -sp--y~~Ll~~~~r~~la~~~n~~il~~~g~~~~~p----------~Le~Llk~~--------~w~~~~l~~~~~elP~ 215 (317)
-| |-+-++ ..|.++...|.+.+|+..|++.++| +++.|+|.. .|+. ..|||+
T Consensus 251 gqPiEdIDkvn-k~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf~~l~k~~si~~~kHvdWT~------~~eLP~ 323 (396)
T COG5109 251 GQPIEDIDKVN-KSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAFLQLSKSGSILFDKHVDWTD------DSELPM 323 (396)
T ss_pred CCcHHHHHHhh-hhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHHHHHHHhhhHHHhhccCccC------CCCCce
Confidence 11 112122 3489999999999999999998777 777777753 7776 357999
Q ss_pred ccCCcccCCCcceEE--eecccccccccccccccccccchhhhh--hhhhH-HHhhccCCCCCchhHHHHHHH
Q psy11905 216 MRAFSQLCGCHSITG--LSFTQSSYLLSLVSSTCNAATGRYSIK--VALNT-AILKMEHHESTSPRLLNLLKI 283 (317)
Q Consensus 216 ei~l~~~~~~hSvf~--vsreq~t~~~~~~~~~~~~~~~r~~~~--~~~n~-~~~~~~~~~~~~~~l~~l~kl 283 (317)
+|-||+.+.|||||. |+|||+|++||||.+.|||+..+-... |. |. --|||++.+ ...++.+.+|+
T Consensus 324 eIklp~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~-nG~~~FKCPYCP-~~~~~~~~~rv 394 (396)
T COG5109 324 EIKLPKGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQ-NGVLSFKCPYCP-EMSKYENILRV 394 (396)
T ss_pred EEecCCcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhh-cCcEEeeCCCCC-cchhhhhhhcc
Confidence 999999999999999 999999999999999999999887654 32 33 356888877 56777777664
No 6
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=99.68 E-value=3.7e-16 Score=123.28 Aligned_cols=92 Identities=40% Similarity=0.549 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCCC-CCCcchhccCHHHHHHHHHHHHHHHHhhc-CCCCCchHHH
Q psy11905 116 KIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEP-MNSPFGDLLNQAHRQKVASQLNTAILKME-HHESTSPRLL 193 (317)
Q Consensus 116 ~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~~-~~spy~~Ll~~~~r~~la~~~n~~il~~~-g~~~~~p~Le 193 (317)
++.+||+|||+++++|..+++.++++|+++||+|+|.++ +.+||++++++++|+.||+.||+++|..+ |.+ ..|.|+
T Consensus 2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~-~~s~L~ 80 (99)
T smart00757 2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKS-SESPLE 80 (99)
T ss_pred cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCC-CCChHH
Confidence 578999999999999998877778999999999999998 89999999999999999999999999998 998 789999
Q ss_pred HHHHHHHHHhhhhhh
Q psy11905 194 NLLKIILWSQGELDK 208 (317)
Q Consensus 194 ~Llk~~~w~~~~l~~ 208 (317)
.++++..|+...+..
T Consensus 81 ~~~~~~~~~~~~l~~ 95 (99)
T smart00757 81 ILLSAGLAALKTLLE 95 (99)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998766654
No 7
>KOG2659|consensus
Probab=99.34 E-value=2.9e-11 Score=108.30 Aligned_cols=196 Identities=21% Similarity=0.312 Sum_probs=123.6
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHH
Q psy11905 67 IMIRDAIQN-GRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERT 145 (317)
Q Consensus 67 ~~I~~~I~~-gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~l 145 (317)
.-|.+.+.. |--+.|.....+. .+.....++.+.=.+.+..++|+.|++.+||+..++..+..-.++....=.++++
T Consensus 31 ~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q 108 (228)
T KOG2659|consen 31 RLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQL 108 (228)
T ss_pred HHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHH
Confidence 344455544 4444444444332 2322245677888899999999999999999999976655444442211122222
Q ss_pred HHHHccCCCCCCcchhccCHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhhhhhhccCCCCcccCCcccCCC
Q psy11905 146 MALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGC 225 (317)
Q Consensus 146 m~lL~y~~~~~spy~~Ll~~~~r~~la~~~n~~il~~~g~~~~~p~Le~Llk~~~w~~~~l~~~~~elP~ei~l~~~~~~ 225 (317)
..+=+- -....+-|-.|.+.-+...|.. +...+.-+-+.... |- +|
T Consensus 109 ~lIEli-------------R~~~~eeal~F~q~~LA~~a~e-~~~~~~elE~~l~l----Lv-----f~----------- 154 (228)
T KOG2659|consen 109 HLIELI-------------REGKTEEALEFAQTKLAPFAEE-NPKKMEELERTLAL----LV-----FE----------- 154 (228)
T ss_pred HHHHHH-------------HhhhHHHHHHHHHHHccccccc-cHHHHHHHHHHHHH----HH-----cC-----------
Confidence 111000 0112334555555556655654 11222222222211 10 01
Q ss_pred cceEEeecccccccccccccccccccchhhhhhhhhHHHhhccCCCCCchhHHHHHHHHHHhhhhhcccCCCCccccccc
Q psy11905 226 HSITGLSFTQSSYLLSLVSSTCNAATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMVDFS 305 (317)
Q Consensus 226 hSvf~vsreq~t~~~~~~~~~~~~~~~r~~~~~~~n~~~~~~~~~~~~~~~l~~l~kl~~w~q~~l~~~~~~~~~~~~~~ 305 (317)
..|.++.+.++ +.++|+++|+++|++|+++++++ ++|||++|+|++.|||.+|+.+++.||+++|+.
T Consensus 155 -------~~~~sp~~~l~-----~~s~R~kvA~~vN~aiL~~~~~~-~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T KOG2659|consen 155 -------LSQESPSAELL-----SQSLRQKVASEVNSAILASQEHE-SEPKLPFLLKLISWAQEELDREKFSEPHFKDLT 221 (228)
T ss_pred -------CcccCcHHHHH-----HHHHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHHHhHhhccccccCCcc
Confidence 12333444455 78999999999999999999988 899999999999999999999999999999999
Q ss_pred cccccc
Q psy11905 306 SARLDS 311 (317)
Q Consensus 306 ~~~~~~ 311 (317)
+|.++.
T Consensus 222 ~~~~e~ 227 (228)
T KOG2659|consen 222 KIKSEE 227 (228)
T ss_pred ccccCC
Confidence 998763
No 8
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=99.31 E-value=3.5e-12 Score=90.76 Aligned_cols=55 Identities=33% Similarity=0.575 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcch
Q psy11905 63 MENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKI 117 (317)
Q Consensus 63 ~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~ 117 (317)
+.++..|+++|+.||+++|++|+++++|.+.+.++.++|.|++|+|||+++.|+.
T Consensus 2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 5789999999999999999999999999999999999999999999999998764
No 9
>KOG0293|consensus
Probab=98.40 E-value=3.4e-06 Score=81.12 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhh-ChhhhcCCCcchh
Q psy11905 23 IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNEL-YPELLDNDRYIYF 101 (317)
Q Consensus 23 ~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~-~p~L~~~~s~LeF 101 (317)
+...++.+++.+.|+..||.+++..+..|+|+-.+.. .-+...+++++|+++.++.-.... ++. .+......|
T Consensus 15 ikk~efi~il~q~l~slgy~~S~~~lE~es~ll~~ta-----t~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~f 88 (519)
T KOG0293|consen 15 IKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTA-----TTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMF 88 (519)
T ss_pred eccchhhHhHHHHHHhcCccccchhhHHhhCcccccc-----hHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHH
Confidence 4556788999999999999999999999999974432 236678899999999999877666 343 344457899
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCCCCC----CcchhccCHHHHHHHHHHHHH
Q psy11905 102 HLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMN----SPFGDLLNQAHRQKVASQLNT 177 (317)
Q Consensus 102 ~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~~~~----spy~~Ll~~~~r~~la~~~n~ 177 (317)
.+.+|.|+|+++.|++..|+...|..+.+... ..+.+.++.+.|++++... ..-+. + ...|.++.+++..
T Consensus 89 Lv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~----~~kk~~el~~sll~sn~~~~ne~~~~~~-~-~n~R~~ll~elsk 162 (519)
T KOG0293|consen 89 LVNKQIFLEFLKTGSISHALPVLRNPVLYLRK----NKKKFHELASSLLVSNDQFSNEENTTAQ-L-NNERDKLLDELSK 162 (519)
T ss_pred HHHHHHHHHHHhhccHhhhhHhhhcchhhhhh----hHHHHHHHHHHHhccccccccccchhhh-h-chhHHHHHHHHHh
Confidence 99999999999999999999999987777764 3578899999999887321 12122 2 2347788888877
Q ss_pred HHHhhcCCCCCchHHHHHHHHH
Q psy11905 178 AILKMEHHESTSPRLLNLLKII 199 (317)
Q Consensus 178 ~il~~~g~~~~~p~Le~Llk~~ 199 (317)
-|-...-+ +.-+|+.|++++
T Consensus 163 yi~p~ill--P~rRLehLl~qA 182 (519)
T KOG0293|consen 163 YIPPNILL--PKRRLEHLLEQA 182 (519)
T ss_pred hCCHhhcC--ChHHHHHHHHHH
Confidence 66554444 366999999987
No 10
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.19 E-value=2.5e-06 Score=51.49 Aligned_cols=27 Identities=44% Similarity=0.892 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHh
Q psy11905 26 SDMNKLIMNYLVTEGFKEAAEKFQQES 52 (317)
Q Consensus 26 ~~Ln~lI~~yL~r~Gy~dtA~~f~~Es 52 (317)
+.||++|.+||.++||.+||.+|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 469999999999999999999999985
No 11
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.96 E-value=1.7e-05 Score=49.57 Aligned_cols=32 Identities=47% Similarity=0.949 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q psy11905 24 QRSDMNKLIMNYLVTEGFKEAAEKFQQESGIT 55 (317)
Q Consensus 24 ~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~ 55 (317)
.+..++++|++||.++||.++|.+|.+|+++.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 45789999999999999999999999999875
No 12
>KOG1477|consensus
Probab=97.80 E-value=5.3e-06 Score=82.79 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCC----hhHHH--------HHHHHHHHHHcCCHHHHHHHHHhhCh
Q psy11905 23 IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD----LNTME--------NRIMIRDAIQNGRIQEATALVNELYP 90 (317)
Q Consensus 23 ~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~----~e~~~--------~r~~I~~~I~~gdi~~Al~w~~~~~p 90 (317)
.........+..|+++.|+.+++..|+..+.-..... ...+. .+.....-+-.+-+..+.+.+.+.-+
T Consensus 247 ~s~~l~t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~ 326 (469)
T KOG1477|consen 247 ISFNLSTVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIP 326 (469)
T ss_pred ecccccCCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccc
Confidence 3333455788899999999999999988765432211 11111 23333333344455555666555555
Q ss_pred hhhc-------CCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCC--CChhhHHHHHHHHHHHccCCCCCCcchh
Q psy11905 91 ELLD-------NDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQ--SDPDILNELERTMALLAFGEPMNSPFGD 161 (317)
Q Consensus 91 ~L~~-------~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~--~~~~~~~eiq~lm~lL~y~~~~~spy~~ 161 (317)
.... ..+...+.++++.+|.+.+.|.+...+++-+.++++... .+....+.++..++||+|++|..||...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~ 406 (469)
T KOG1477|consen 327 TYRKVGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGY 406 (469)
T ss_pred cccccceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCcccc
Confidence 4444 356788999999999999999999999999999998876 3446789999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q psy11905 162 LLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIIL 200 (317)
Q Consensus 162 Ll~~~~r~~la~~~n~~il~~~g~~~~~p~Le~Llk~~~ 200 (317)
++++.+++-+++.+|.+++...+.+ ..+.|+.++.+..
T Consensus 407 ~~~~~~~e~v~~~~n~~il~t~~~~-~~~~l~~~l~~~~ 444 (469)
T KOG1477|consen 407 LLDPIQREPVAEALNSAILETDNNS-KDPDLERVLSQTP 444 (469)
T ss_pred ccCcccchhHHhhhcccccccCCCC-ccchhhhhhccch
Confidence 9999999999999999999999999 7888888887763
No 13
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.61 E-value=0.00081 Score=45.11 Aligned_cols=28 Identities=7% Similarity=-0.016 Sum_probs=18.8
Q ss_pred eecccccccccccccccccccchhhhhh
Q psy11905 231 LSFTQSSYLLSLVSSTCNAATGRYSIKV 258 (317)
Q Consensus 231 vsreq~t~~~~~~~~~~~~~~~r~~~~~ 258 (317)
|.+|+++++||||.+.|||+.+|..+..
T Consensus 3 Ic~e~~~~~n~P~~L~CGH~~c~~cl~~ 30 (43)
T PF13445_consen 3 ICKEFSTEENPPMVLPCGHVFCKDCLQK 30 (43)
T ss_dssp TT----TTSS-EEE-SSS-EEEHHHHHH
T ss_pred ccccccCCCCCCEEEeCccHHHHHHHHH
Confidence 6788999999999999999999998864
No 14
>KOG0275|consensus
Probab=96.09 E-value=0.074 Score=50.50 Aligned_cols=168 Identities=22% Similarity=0.308 Sum_probs=108.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcc
Q psy11905 20 TIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYI 99 (317)
Q Consensus 20 ~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~L 99 (317)
++.+....+-++|.+||-.+....|...+.+|.++.-. ...........|-+|+|+..+.-++...- ...-
T Consensus 2 sieiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLN----TVDSvd~Fv~dI~sG~WD~VL~~vqsLKL-----P~kk 72 (508)
T KOG0275|consen 2 SIEIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLN----TVDSVDGFVNDINSGHWDTVLKTVQSLKL-----PDKK 72 (508)
T ss_pred ceeeecchHHHHHHHHHhhhhHHHHHHHHHHhhcccee----echhHHHHHHhcccCchHHHHHHHHhccC-----chhH
Confidence 34556668999999999999999999999999988632 12223556788999999999999887641 1122
Q ss_pred hhhhhHHHHHHHHHhcchHHHHHHHHHHhcc--cCCCChhhHHHHHHHHHHHccCCCCCCcchhccCHHHHHHHHHHHHH
Q psy11905 100 YFHLQQLHLLELIRENKIEEALHFAQEQLSE--SGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNT 177 (317)
Q Consensus 100 eF~L~~q~fIeLir~~~~~eAl~yar~~l~~--~~~~~~~~~~eiq~lm~lL~y~~~~~spy~~Ll~~~~r~~la~~~n~ 177 (317)
...|..|-.+|||.-.....|-..+|+.-+. .....|+..-.++.+..-- |-+|. ..|.+--...+|..+|..+..
T Consensus 73 L~dLYEqivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~-YFDp~-EaY~dssKEkrRa~IAQ~ls~ 150 (508)
T KOG0275|consen 73 LIDLYEQIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRS-YFDPR-EAYGDSSKEKRRAVIAQALSG 150 (508)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhccc-ccChh-hhcCcchHHHHHHHHHHHhcC
Confidence 3478888889998877776777777753221 1222333333333332221 44432 235553334567777776554
Q ss_pred HHHhhcCCCCCchHHHHHHHHH-HHHh
Q psy11905 178 AILKMEHHESTSPRLLNLLKII-LWSQ 203 (317)
Q Consensus 178 ~il~~~g~~~~~p~Le~Llk~~-~w~~ 203 (317)
+.- -. +.++|-+|+-++ -|.+
T Consensus 151 EV~---VV--ppSRLlaLlGQaLKWQq 172 (508)
T KOG0275|consen 151 EVH---VV--PPSRLLALLGQALKWQQ 172 (508)
T ss_pred ceE---Ec--ChHHHHHHHHHHhhhHh
Confidence 432 12 567888888876 7876
No 15
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=93.87 E-value=0.076 Score=41.20 Aligned_cols=48 Identities=29% Similarity=0.233 Sum_probs=39.5
Q ss_pred cccchhhhhhhhhHHHhhccCCCCCchhHHHHHHHHHHhhhhhcccCC
Q psy11905 249 AATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKI 296 (317)
Q Consensus 249 ~~~~r~~~~~~~n~~~~~~~~~~~~~~~l~~l~kl~~w~q~~l~~~~~ 296 (317)
...+|..++.++|.++++..+....+|.|..++|...||+.+|.+.+.
T Consensus 51 ~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~~~~~~~~~~~~l~~~~~ 98 (99)
T smart00757 51 SPSQREKLAEELNSAILELLHGKSSESPLEILLSAGLAALKTLLEKGG 98 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHHhcC
Confidence 345789999999999998863233689999999999999999987553
No 16
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=91.02 E-value=2.4 Score=35.07 Aligned_cols=40 Identities=28% Similarity=0.178 Sum_probs=35.3
Q ss_pred cchhhhhhhhhHHHhhccCCCCCchhHHHHHHHHHHhhhhh
Q psy11905 251 TGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGEL 291 (317)
Q Consensus 251 ~~r~~~~~~~n~~~~~~~~~~~~~~~l~~l~kl~~w~q~~l 291 (317)
..|.+++.++|.++++..+.. .+|.|..+++-..||+..|
T Consensus 105 ~~~~~la~~~~~~~l~~~~~~-~~s~L~~~~~~g~~~l~~l 144 (145)
T PF10607_consen 105 ERREELAEEFNSAILKSYGLP-KESPLEVILKAGLSALKTL 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhhhc
Confidence 678899999999999887655 7899999999999999765
No 17
>KOG1333|consensus
Probab=86.57 E-value=4.3 Score=36.27 Aligned_cols=137 Identities=17% Similarity=0.239 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHH----HHHhhChhhhcCCC----
Q psy11905 26 SDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATA----LVNELYPELLDNDR---- 97 (317)
Q Consensus 26 ~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~----w~~~~~p~L~~~~s---- 97 (317)
+.++.+|-+||+-.|+..|.++|-.|.....+.....=.-..+..++|...|++.--+ |=+..+..|.....
T Consensus 6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~ 85 (241)
T KOG1333|consen 6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH 85 (241)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4688999999999999999999988887665444333333566777888888876543 22333444433322
Q ss_pred cchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccC--C-C-CCCcchhccCHHHHHHH
Q psy11905 98 YIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFG--E-P-MNSPFGDLLNQAHRQKV 171 (317)
Q Consensus 98 ~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~--~-~-~~spy~~Ll~~~~r~~l 171 (317)
.++=.|.+..++--|.++..+.|=+|-++.-+...+ ++++.+ .++|+ + . ++.|++.+|+.. |.++
T Consensus 86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqn-q~eWkD-------WF~fPf~~~a~~tppf~~~F~kt-w~e~ 154 (241)
T KOG1333|consen 86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQN-QAEWKD-------WFVLPFLPSAKDTPPFRKYFDKT-WIEI 154 (241)
T ss_pred HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhc-chhhhh-------heecccCCCCCCCccHHHHHHhh-hhHh
Confidence 366678888888889999999998888865444433 222222 23332 1 2 345677766543 6554
No 18
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=81.11 E-value=4.9 Score=30.67 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCC
Q psy11905 25 RSDMNKLIMNYLVTEGFKEAAEKFQQESGITPS 57 (317)
Q Consensus 25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~ 57 (317)
...++.+|.+||--.||.-|+..|..|+|....
T Consensus 18 g~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 18 GRLINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred hHHHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 346899999999999999999999999998743
No 19
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=67.05 E-value=84 Score=27.19 Aligned_cols=106 Identities=16% Similarity=-0.005 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCC-CCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcC-CCcchhhh
Q psy11905 26 SDMNKLIMNYLVTEGFKEAAEKFQQESGIT-PSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDN-DRYIYFHL 103 (317)
Q Consensus 26 ~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~-~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~-~s~LeF~L 103 (317)
.....-+++|+.+.|-.+.|-.-...+--. .....-.-.-..-|+-+|..||+..+...+++...-+.+. +.....+|
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 345567899999999776665444333211 1111111223688999999999999999999887666553 24567778
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHhccc
Q psy11905 104 QQLHLLELIRENKIEEALHFAQEQLSES 131 (317)
Q Consensus 104 ~~q~fIeLir~~~~~eAl~yar~~l~~~ 131 (317)
.+..-+-.+..++..+|-+..-...+.|
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 8888888888888888744444333333
No 20
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=66.81 E-value=11 Score=31.45 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=38.3
Q ss_pred cchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHH
Q psy11905 98 YIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMA 147 (317)
Q Consensus 98 ~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~ 147 (317)
.+.|=+...-|++||..|...+|..|..++-..+.. .+..+|+++.+
T Consensus 39 ~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~---~~~~~i~~L~~ 85 (142)
T PF04494_consen 39 RLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFED---SHQEDIEKLSS 85 (142)
T ss_dssp GGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHG---HGHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhH---HHHHHHHHHHh
Confidence 588999999999999999999999999987766654 46677777764
No 21
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=63.41 E-value=46 Score=22.92 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=34.3
Q ss_pred HHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccC
Q psy11905 72 AIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESG 132 (317)
Q Consensus 72 ~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~ 132 (317)
++..|+++.|++.+++... ....+..+.+. --.=+++.|+.++|..+..+-.....
T Consensus 1 ll~~~~~~~A~~~~~~~l~-~~p~~~~~~~~----la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ-RNPDNPEARLL----LAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH-HTTTSHHHHHH----HHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHH-HCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4778999999999887421 11122223332 22234678999999998886555443
No 22
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=57.35 E-value=15 Score=30.28 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=38.8
Q ss_pred cchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHH
Q psy11905 98 YIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALL 149 (317)
Q Consensus 98 ~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL 149 (317)
.+.|=+...-|++||.+|...+|.+|.+++-.-+.. .|..+|+.+.++.
T Consensus 28 ~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~---~~~~~i~~L~~i~ 76 (133)
T cd08044 28 QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFED---SHSEDIKKLSSIT 76 (133)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHH---HHHHHHHHHHccC
Confidence 488889999999999999999998888876555533 5778888885543
No 23
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=55.90 E-value=94 Score=24.42 Aligned_cols=103 Identities=17% Similarity=0.055 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHHhChHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcc
Q psy11905 21 IHIQRSDMNKLIMNYLVTEGFKEAAEKFQQES-GITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYI 99 (317)
Q Consensus 21 v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es-~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~L 99 (317)
.+.+........+..++..|-.+.|....+.. .+.+ .+.+....+ -.-....|+.+.|+.++++-- .+...+...
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l--a~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~ 87 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGL--AACCQMLKEYEEAIDAYALAA-ALDPDDPRP 87 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-hcCCCChHH
Confidence 33333334445556666677666665554443 3332 222222222 223345688999998877531 122222233
Q ss_pred hhhhhHHHHHHHHHhcchHHHHHHHHHHhccc
Q psy11905 100 YFHLQQLHLLELIRENKIEEALHFAQEQLSES 131 (317)
Q Consensus 100 eF~L~~q~fIeLir~~~~~eAl~yar~~l~~~ 131 (317)
.+.+-. +.... |+..+|+.+.+.-+.-.
T Consensus 88 ~~~la~---~~~~~-g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 88 YFHAAE---CLLAL-GEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHH---HHHHc-CCHHHHHHHHHHHHHhc
Confidence 333332 22222 57888888888755543
No 24
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.90 E-value=91 Score=28.19 Aligned_cols=15 Identities=47% Similarity=0.720 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhCCCC
Q psy11905 42 KEAAEKFQQESGITP 56 (317)
Q Consensus 42 ~dtA~~f~~Es~l~~ 56 (317)
.+.++.|+...++++
T Consensus 63 ~~~~~~Fa~~f~ip~ 77 (226)
T PF13934_consen 63 SELAESFARAFGIPP 77 (226)
T ss_pred ccHHHHHHHHhCCCH
Confidence 457888888888873
No 25
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=49.58 E-value=1.8e+02 Score=27.69 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHhC--------CC--------CCCC----------------------------hhH
Q psy11905 27 DMNKLIMNYLVTEGFKEAAEKFQQESG--------IT--------PSLD----------------------------LNT 62 (317)
Q Consensus 27 ~Ln~lI~~yL~r~Gy~dtA~~f~~Es~--------l~--------~~~~----------------------------~e~ 62 (317)
++++++++.|.+.||.++++++..+.. +. +..+ .+.
T Consensus 134 Dgq~~~~qal~~lG~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~ 213 (301)
T TIGR03362 134 DGQRLSAQALERLGYAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDW 213 (301)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccH
Confidence 578999999999999999999888752 11 1111 012
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHH
Q psy11905 63 MENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQE 126 (317)
Q Consensus 63 ~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~ 126 (317)
.....+.+..+.+|.++.|+.|+++..+........+...|..-++.+ ..|...-|+.+.+.
T Consensus 214 ~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~--~~g~~~lA~~ll~~ 275 (301)
T TIGR03362 214 EELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLE--QAGKAELAQQLYAA 275 (301)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHH--HcCCHHHHHHHHHH
Confidence 233466788889999999999999865544332222333333333222 34555555555553
No 26
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=48.93 E-value=1.8e+02 Score=29.92 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHh
Q psy11905 13 TWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQES 52 (317)
Q Consensus 13 ~w~~~~~~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es 52 (317)
+|.+.-+..+..-.-||--.+.|++|.|..+.|...+.-.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 4444445555555556666666666666666666555443
No 27
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=42.50 E-value=3.3e+02 Score=26.89 Aligned_cols=97 Identities=21% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcch
Q psy11905 21 IHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIY 100 (317)
Q Consensus 21 v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~Le 100 (317)
...-.+.|-.-++.|+-..|-.+.|..+.++.....+ +... .-++-.+..++-..|+..+++. |.+.. -.
T Consensus 164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p-ev~~----~LA~v~l~~~~E~~AI~ll~~a---L~~~p--~d 233 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDP-EVAV----LLARVYLLMNEEVEAIRLLNEA---LKENP--QD 233 (395)
T ss_pred CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCC-cHHH----HHHHHHHhcCcHHHHHHHHHHH---HHhCC--CC
Confidence 4455677778888999999999989888888765432 2211 1233344567788999998875 33222 22
Q ss_pred hhhhHHHHHHHHHhcchHHHHHHHHHH
Q psy11905 101 FHLQQLHLLELIRENKIEEALHFAQEQ 127 (317)
Q Consensus 101 F~L~~q~fIeLir~~~~~eAl~yar~~ 127 (317)
..|...+---++..++.+.|+..|++-
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 666666666678888999999999963
No 28
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.47 E-value=90 Score=31.33 Aligned_cols=74 Identities=24% Similarity=0.221 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHH
Q psy11905 29 NKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHL 108 (317)
Q Consensus 29 n~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~f 108 (317)
..-|+.||..+||.+.|-.|+++- +++.-=+|.-||++.|++.+.+... -...++=-
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~-------------~~rFeLAl~lg~L~~A~~~a~~~~~----------~~~W~~Lg 354 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP-------------DHRFELALQLGNLDIALEIAKELDD----------PEKWKQLG 354 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H-------------HHHHHHHHHCT-HHHHHHHCCCCST----------HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh-------------HHHhHHHHhcCCHHHHHHHHHhcCc----------HHHHHHHH
Confidence 778899999999999999996442 4777789999999999999876531 11333333
Q ss_pred HHHHHhcchHHHHHHHH
Q psy11905 109 LELIRENKIEEALHFAQ 125 (317)
Q Consensus 109 IeLir~~~~~eAl~yar 125 (317)
-..++.|+..-|-+..+
T Consensus 355 ~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHTTBHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 34567777766655544
No 29
>KOG2910|consensus
Probab=41.40 E-value=76 Score=28.21 Aligned_cols=64 Identities=30% Similarity=0.376 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhC--hhhhc-----------CCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhc
Q psy11905 64 ENRIMIRDAIQNGRIQEATALVNELY--PELLD-----------NDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 64 ~~r~~I~~~I~~gdi~~Al~w~~~~~--p~L~~-----------~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~ 129 (317)
.+|..-+++|+.|+=+.|+-.+...+ ..|+. .-++++|.....+|++-++.|+ +||.-.++.|.
T Consensus 41 ~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN--~~lkkl~~~~~ 117 (209)
T KOG2910|consen 41 AERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGN--EALKKLQQEFD 117 (209)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcC
Confidence 34566667777777666665554332 23333 2368999999999999999984 67666665553
No 30
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=40.41 E-value=64 Score=23.91 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCC
Q psy11905 22 HIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGR 77 (317)
Q Consensus 22 ~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gd 77 (317)
..+++.|+.+|-+|..|+|-.--. .....-....+++.+|++|+
T Consensus 7 ~L~~eTL~nLIeefv~ReGTdyG~------------~E~sL~~kv~qv~~qL~~G~ 50 (70)
T PF06794_consen 7 QLPPETLNNLIEEFVLREGTDYGE------------QELSLEEKVEQVKQQLKSGE 50 (70)
T ss_dssp GS-HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTS
T ss_pred HCCHHHHHHHHHHHHHccCcccCc------------ccccHHHHHHHHHHHHHcCC
Confidence 367889999999999999964211 11122334677888888886
No 31
>KOG4594|consensus
Probab=39.83 E-value=33 Score=32.33 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhC
Q psy11905 25 RSDMNKLIMNYLVTEGFKEAAEKFQQESG 53 (317)
Q Consensus 25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~ 53 (317)
++.|.--|.+||+|-|...+|++|..|..
T Consensus 17 rekLa~YvYEYLlhvgaqksaqtflseir 45 (354)
T KOG4594|consen 17 REKLALYVYEYLLHVGAQKSAQTFLSEIR 45 (354)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 66788899999999999999999988764
No 32
>KOG1156|consensus
Probab=39.53 E-value=4.9e+02 Score=27.60 Aligned_cols=130 Identities=22% Similarity=0.222 Sum_probs=77.0
Q ss_pred hHHHHHHhcCCCCH-HHHHHHHHHHHHHhCh--HHHHHHHHHHhCCCCCC-Ch-hHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11905 12 KTWLNKLETIHIQR-SDMNKLIMNYLVTEGF--KEAAEKFQQESGITPSL-DL-NTMENRIMIRDAIQNGRIQEATALVN 86 (317)
Q Consensus 12 ~~w~~~~~~v~~~~-~~Ln~lI~~yL~r~Gy--~dtA~~f~~Es~l~~~~-~~-e~~~~r~~I~~~I~~gdi~~Al~w~~ 86 (317)
++|...++-..-.+ .-+--.|+.||.-+-- .++.+.|.+..+..++. +. .......++...+.+|..+.|++-+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 34444444432222 2234445555543211 23344444444322222 22 24445677788889999999999999
Q ss_pred hhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHH
Q psy11905 87 ELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMA 147 (317)
Q Consensus 87 ~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~ 147 (317)
.+.+.+.+. +-|...+-.|.. +-+.+++|+...+..+.++.+.. .+...++.+++
T Consensus 210 ~~e~~i~Dk---la~~e~ka~l~~--kl~~lEeA~~~y~~Ll~rnPdn~-~Yy~~l~~~lg 264 (700)
T KOG1156|consen 210 DNEKQIVDK---LAFEETKADLLM--KLGQLEEAVKVYRRLLERNPDNL-DYYEGLEKALG 264 (700)
T ss_pred hhhhHHHHH---HHHhhhHHHHHH--HHhhHHhHHHHHHHHHhhCchhH-HHHHHHHHHHH
Confidence 999888763 555555555443 44678999999998888876543 45556666665
No 33
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=39.39 E-value=51 Score=22.29 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHhcccCC
Q psy11905 104 QQLHLLELIRENKIEEALHFAQEQLSESGQ 133 (317)
Q Consensus 104 ~~q~fIeLir~~~~~eAl~yar~~l~~~~~ 133 (317)
.+.++.+.|..|+..+|++++..+-.....
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~ 33 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLE 33 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhc
Confidence 356788999999999999999987665533
No 34
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=38.59 E-value=2e+02 Score=29.47 Aligned_cols=91 Identities=23% Similarity=0.170 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHH
Q psy11905 28 MNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLH 107 (317)
Q Consensus 28 Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~ 107 (317)
+.-.+++|+-+.|..+.|-.++.++=-..+...+.+...-+|.. ..||+..|.+|++.-+ .|...+..+.=+ +-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK--h~G~~~~Aa~~~~~Ar-~LD~~DRyiNsK--~a- 269 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK--HAGDLKEAAEAMDEAR-ELDLADRYINSK--CA- 269 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHHH-hCChhhHHHHHH--HH-
Confidence 55788999999999999888887653333444555555555544 5788999988887764 233222212111 11
Q ss_pred HHHHHHhcchHHHHHHHH
Q psy11905 108 LLELIRENKIEEALHFAQ 125 (317)
Q Consensus 108 fIeLir~~~~~eAl~yar 125 (317)
--++|.|.+++|.+-+.
T Consensus 270 -Ky~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 270 -KYLLRAGRIEEAEKTAS 286 (517)
T ss_pred -HHHHHCCCHHHHHHHHH
Confidence 12467777777766555
No 35
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=38.14 E-value=1.6e+02 Score=25.45 Aligned_cols=88 Identities=22% Similarity=0.322 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcch
Q psy11905 21 IHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIY 100 (317)
Q Consensus 21 v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~Le 100 (317)
+.++ ..|..++.+=|++.|.+.....|.+-.=++++..+. ...+.-|.. +|...+-+=++.
T Consensus 25 i~~~-~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA--------~~LLs~~~~----------~~~~~Ql~lDML 85 (167)
T PF07035_consen 25 IPVQ-HELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLA--------CQLLSLGNQ----------YPPAYQLGLDML 85 (167)
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHH--------HHHHHhHcc----------ChHHHHHHHHHH
Confidence 3433 358889999999999988888887766555432221 011111211 222222222233
Q ss_pred hhhh--HHHHHH-HHHhcchHHHHHHHHHH
Q psy11905 101 FHLQ--QLHLLE-LIRENKIEEALHFAQEQ 127 (317)
Q Consensus 101 F~L~--~q~fIe-Lir~~~~~eAl~yar~~ 127 (317)
..|. .-..+| |+..|++.+|+.|||+.
T Consensus 86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHhhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3333 223455 67889999999999973
No 36
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=37.42 E-value=58 Score=24.80 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q psy11905 61 NTMENRIMIRDAIQNGRIQEATALVNEL 88 (317)
Q Consensus 61 e~~~~r~~I~~~I~~gdi~~Al~w~~~~ 88 (317)
........|.++|.+||.+.|-+.+.+|
T Consensus 95 ~~~~~h~~i~~ai~~~d~~~a~~~~~~h 122 (125)
T PF07729_consen 95 RSLEEHREIIDAIRAGDPEAAREALRQH 122 (125)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567778888888888888888888776
No 37
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=36.76 E-value=86 Score=22.86 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHH
Q psy11905 68 MIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQ 125 (317)
Q Consensus 68 ~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar 125 (317)
.-.-....|+.+.|+.+++. ..+...+....+.+ -+ -+++.|+.++|++...
T Consensus 31 la~~~~~~~~y~~A~~~~~~--~~~~~~~~~~~~l~-a~---~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK--LKLDPSNPDIHYLL-AR---CLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC--HTHHHCHHHHHHHH-HH---HHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH--hCCCCCCHHHHHHH-HH---HHHHhCCHHHHHHHHh
Confidence 44555678888888888877 23333222222211 22 2344577778877654
No 38
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=36.59 E-value=54 Score=20.55 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=14.3
Q ss_pred HHHHHHHH--cCCHHHHHHHH
Q psy11905 67 IMIRDAIQ--NGRIQEATALV 85 (317)
Q Consensus 67 ~~I~~~I~--~gdi~~Al~w~ 85 (317)
...+.++. .||++.|++|+
T Consensus 17 ~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 17 EQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHhC
Confidence 46666665 56999999986
No 39
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=36.26 E-value=3.9e+02 Score=25.49 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHH
Q psy11905 27 DMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQL 106 (317)
Q Consensus 27 ~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q 106 (317)
.++.. ...|+..|....|+.+.++..+++ .---.-.|+.....|+|++--.+... +.|++=|.
T Consensus 179 Sl~~T-i~~li~~~~~k~A~kl~k~Fkv~d-----krfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGye---- 241 (319)
T PF04840_consen 179 SLNDT-IRKLIEMGQEKQAEKLKKEFKVPD-----KRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYE---- 241 (319)
T ss_pred CHHHH-HHHHHHCCCHHHHHHHHHHcCCcH-----HHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChH----
Confidence 34444 344566777788888888887741 12235667777777777777666543 23454444
Q ss_pred HHHHH-HHhcchHHHHHHHHH
Q psy11905 107 HLLEL-IRENKIEEALHFAQE 126 (317)
Q Consensus 107 ~fIeL-ir~~~~~eAl~yar~ 126 (317)
-|++. ++.|...+|..|..+
T Consensus 242 pFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 242 PFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHh
Confidence 34443 345666677777765
No 40
>KOG2917|consensus
Probab=34.71 E-value=7.3 Score=35.26 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=30.2
Q ss_pred cccCCcccCCCcceEE-eeccccccccccccccc
Q psy11905 215 KMRAFSQLCGCHSITG-LSFTQSSYLLSLVSSTC 247 (317)
Q Consensus 215 ~ei~l~~~~~~hSvf~-vsreq~t~~~~~~~~~~ 247 (317)
+|-||+.-++-|+||. |||-|-....+|++.+|
T Consensus 43 ~ekdlDEVLQthtVf~NVSKG~vAkk~dL~kaFg 76 (250)
T KOG2917|consen 43 VEKDLDEVLQTHTVFSNVSKGQVAKKEDLIKAFG 76 (250)
T ss_pred CcccHHHHHHHhHhhhhccccccccHHHHHHHhC
Confidence 6788999999999999 99999998888998888
No 41
>KOG0273|consensus
Probab=34.46 E-value=13 Score=37.26 Aligned_cols=36 Identities=33% Similarity=0.585 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q psy11905 21 IHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITP 56 (317)
Q Consensus 21 v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~ 56 (317)
++++.+++|.||--||-..||.-+|=+|..|+++..
T Consensus 1 msitsdEvN~LV~RYLqE~G~~hsaftf~~Et~is~ 36 (524)
T KOG0273|consen 1 MSITSDEVNFLVWRYLQESGFSHSAFTFGIETGISQ 36 (524)
T ss_pred CcccHHHHHHHHHHHHHHcCcceeeEEeeecccccc
Confidence 357899999999999999999999999999999873
No 42
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=32.96 E-value=1.1e+02 Score=22.81 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCC---CCCChhHHHHHHHHHHHHHc-----C-CHHHHHHHHHhh
Q psy11905 25 RSDMNKLIMNYLVTEGFKEAAEKFQQESGIT---PSLDLNTMENRIMIRDAIQN-----G-RIQEATALVNEL 88 (317)
Q Consensus 25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~---~~~~~e~~~~r~~I~~~I~~-----g-di~~Al~w~~~~ 88 (317)
...+..+..+|..-.+-...-..|.+..|.. ...+...|..|+.|.+.|.. | +.+.|++-+...
T Consensus 8 ~~TV~dlw~Ew~~g~~g~psI~~le~~yG~~WR~~~~~~~~y~rRK~Ii~~I~~l~~~~g~~~~~ai~~le~~ 80 (81)
T PF12550_consen 8 IKTVYDLWREWFTGLNGQPSIRSLEKKYGSKWRRDSKERRTYSRRKVIIDFIERLANERGISEEEAIEILEEI 80 (81)
T ss_pred CCcHHHHHHHHhcCCCCCCCHHHHHHHhChhhccCcccchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3456777777776544555667777777744 33445689999999999976 4 688888877654
No 43
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.68 E-value=50 Score=31.43 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHh
Q psy11905 66 RIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRE 114 (317)
Q Consensus 66 r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~ 114 (317)
...|++++..||++.|+.++++-. .|=+.=-++-||..|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe--------~LG~~~Ar~tFik~V~~ 301 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAE--------RLGSTSARSTFISSVKG 301 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--------HhCCchHHHHHHHHhhc
Confidence 589999999999999999998852 12233346667766653
No 44
>KOG1585|consensus
Probab=31.45 E-value=2.3e+02 Score=26.59 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=57.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy11905 14 WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNE 87 (317)
Q Consensus 14 w~~~~~~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~ 87 (317)
|-....+...--...--.|.-||.++.|..+-+.+..-+.++.....+.......+..+--+||++.+-.-++.
T Consensus 179 ~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 179 AADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHcC
Confidence 33444443333344667788899999999999999988988877777777788889999999999998877653
No 45
>PRK04966 hypothetical protein; Provisional
Probab=31.42 E-value=88 Score=23.32 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCH
Q psy11905 22 HIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRI 78 (317)
Q Consensus 22 ~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi 78 (317)
..+++.|+.+|-+|..|+|-. .|. .....-....+++.+|++|+.
T Consensus 7 ~L~~eTL~nLIeefv~ReGTd---------yG~---~E~sl~~kv~qv~~qL~~G~~ 51 (72)
T PRK04966 7 DLAPETLENLIESFVLREGTD---------YGE---HERSLEQKVADVKRQLQSGEA 51 (72)
T ss_pred hCCHHHHHHHHHHHHhccCcc---------CCc---ccccHHHHHHHHHHHHHcCCE
Confidence 367889999999999998842 121 122233456777888888763
No 46
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=31.33 E-value=65 Score=23.57 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHH
Q psy11905 102 HLQQLHLLELIRENKIEEALHFAQE 126 (317)
Q Consensus 102 ~L~~q~fIeLir~~~~~eAl~yar~ 126 (317)
.|..++|-+++..|++.+|-..|-.
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~AA~ 31 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4678999999999999999888874
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=30.65 E-value=4.6e+02 Score=24.59 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHH
Q psy11905 27 DMNKLIMNYLVTEGFKEAAEKFQQ 50 (317)
Q Consensus 27 ~Ln~lI~~yL~r~Gy~dtA~~f~~ 50 (317)
.+...++..+.+.|-++.|....+
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~ 93 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQ 93 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHH
Confidence 344455555556665554444433
No 48
>PRK00304 hypothetical protein; Provisional
Probab=30.47 E-value=34 Score=25.70 Aligned_cols=43 Identities=16% Similarity=0.445 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCH
Q psy11905 23 IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRI 78 (317)
Q Consensus 23 ~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi 78 (317)
.+.+.|+.+|-+|..|+|- | .|- ....-....+++.+|++|++
T Consensus 8 L~~eTL~nLIeefv~ReGT-D--------yg~----E~sL~~kv~qv~~qL~~G~~ 50 (75)
T PRK00304 8 LEADTLTRLIEDFVTRDGT-D--------NGD----ETPLETRVLRVRQALTKGQA 50 (75)
T ss_pred CCHHHHHHHHHHHHhccCc-c--------Ccc----cccHHHHHHHHHHHHHcCCE
Confidence 6788999999999999996 2 111 11122345788888888864
No 49
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.95 E-value=3e+02 Score=22.27 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=25.1
Q ss_pred HHHHHHHhChHHHHHHHHHHhCCC-CCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy11905 32 IMNYLVTEGFKEAAEKFQQESGIT-PSLDLNTMENRIMIRDAIQNGRIQEATALVNE 87 (317)
Q Consensus 32 I~~yL~r~Gy~dtA~~f~~Es~l~-~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~ 87 (317)
++..++..|.++-|...-+..--. +...+..+....--+-.+..|+.++|+..++.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555555555554444433332211 22222333333333444555666666666544
No 50
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=29.44 E-value=69 Score=23.11 Aligned_cols=33 Identities=12% Similarity=0.440 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q psy11905 24 QRSDMNKLIMNYLVTEGFKEAAEKFQQESGITP 56 (317)
Q Consensus 24 ~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~ 56 (317)
.+..+=..|.+|...+||.-|...+++..|+..
T Consensus 7 rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S 39 (65)
T PF01726_consen 7 RQKEVLEFIREYIEENGYPPTVREIAEALGLKS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHSS---HHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCC
Confidence 355677899999999999999999999999963
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=29.03 E-value=6.3e+02 Score=25.72 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=55.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhChHHHHHHHHHH-hCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCc
Q psy11905 20 TIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQE-SGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRY 98 (317)
Q Consensus 20 ~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~E-s~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~ 98 (317)
..+.+........+.-+...|.++.|....+. ..+.|. +.+... ..-.-....|+.++|+.++.+- .+.++.
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~--~lg~~l~~~G~~~eAi~~~~~A----l~l~P~ 404 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKY--YYGWNLFMAGQLEEALQTINEC----LKLDPT 404 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHH--HHHHHHHHCCCHHHHHHHHHHH----HhcCCC
Confidence 34444445555566667777876666655444 455433 222222 2233456789999999988763 222332
Q ss_pred -chhhhhHHHHHHHHHhcchHHHHHHHHHHhc
Q psy11905 99 -IYFHLQQLHLLELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 99 -LeF~L~~q~fIeLir~~~~~eAl~yar~~l~ 129 (317)
...... ...-+...|+.++|+.++++-+.
T Consensus 405 ~~~~~~~--~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 405 RAAAGIT--KLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred ChhhHHH--HHHHHHhccCHHHHHHHHHHHHH
Confidence 111111 11124446778889988887653
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=28.22 E-value=4.7e+02 Score=27.42 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=10.5
Q ss_pred HHHhcchHHHHHHHHHHhc
Q psy11905 111 LIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 111 Lir~~~~~eAl~yar~~l~ 129 (317)
+++.|+..+|+.+.+.-+.
T Consensus 187 l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 4455666666666555433
No 53
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=27.09 E-value=2e+02 Score=19.42 Aligned_cols=52 Identities=19% Similarity=0.022 Sum_probs=20.8
Q ss_pred HHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11905 33 MNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVN 86 (317)
Q Consensus 33 ~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~ 86 (317)
+..++..|-++.|....++.--..+.+.+....+-.+ ....|+++.|+++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~--~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRI--LYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHH--HHHTT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Confidence 3445555555555544443322222222222222222 224556666665544
No 54
>KOG0640|consensus
Probab=26.65 E-value=2.1e+02 Score=27.66 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q psy11905 23 IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGIT 55 (317)
Q Consensus 23 ~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~ 55 (317)
-|++.+-+||..+|.+.|+...|..++.....+
T Consensus 9 kdre~lyrLiisqL~ydg~~qiA~~lan~~~~~ 41 (430)
T KOG0640|consen 9 KDREILYRLIISQLRYDGLSQIASALANATMTP 41 (430)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHhhcCc
Confidence 468899999999999999999999999866655
No 55
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=26.41 E-value=44 Score=24.83 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.4
Q ss_pred CHHHHHHHHHhhChhhh
Q psy11905 77 RIQEATALVNELYPELL 93 (317)
Q Consensus 77 di~~Al~w~~~~~p~L~ 93 (317)
.++.|++|+.+|.|.+-
T Consensus 60 tld~Ai~Wi~e~M~~iT 76 (79)
T PF10827_consen 60 TLDLAIAWIGEHMPHIT 76 (79)
T ss_pred cHHHHHHHHHhcccchh
Confidence 57999999999988753
No 56
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=26.27 E-value=98 Score=19.14 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=15.2
Q ss_pred HHHHHHHHH--cCCHHHHHHHHH
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVN 86 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~ 86 (317)
+..++.++. .||++.|+.|+-
T Consensus 15 ~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 15 REEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHh
Confidence 355666664 589999999973
No 57
>KOG0263|consensus
Probab=24.35 E-value=1.2e+02 Score=32.10 Aligned_cols=33 Identities=21% Similarity=0.558 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q psy11905 23 IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGIT 55 (317)
Q Consensus 23 ~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~ 55 (317)
+....+|+++.+||...||..+-..+..|.++.
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~ 51 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLP 51 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhccc
Confidence 557789999999999999999999999998755
No 58
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=24.21 E-value=1.3e+02 Score=24.04 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHH
Q psy11905 63 MENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLE 110 (317)
Q Consensus 63 ~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIe 110 (317)
-.....|.++|.++|++.|.+.+.+....-.+....+.|.+..+++=+
T Consensus 29 ~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~ 76 (121)
T PF14276_consen 29 EEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDN 76 (121)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHH
Confidence 355789999999999999999998887777777777888888887644
No 59
>KOG1156|consensus
Probab=24.00 E-value=6.9e+02 Score=26.57 Aligned_cols=91 Identities=19% Similarity=0.089 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHH
Q psy11905 28 MNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLH 107 (317)
Q Consensus 28 Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~ 107 (317)
..-..++|+.+.|.++.|......+==..++-.|.|..-.+| .-..|+++.|..|+.+-+ +|.. ++-...=+|-+
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI--~kH~G~l~eAa~~l~ea~-elD~--aDR~INsKcAK 447 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARI--FKHAGLLDEAAAWLDEAQ-ELDT--ADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHH--HHhcCChHHHHHHHHHHH-hccc--hhHHHHHHHHH
Confidence 345678888999999999988765522223344555444444 446899999999998764 3332 22222333444
Q ss_pred HHHHHHhcchHHHHHHHH
Q psy11905 108 LLELIRENKIEEALHFAQ 125 (317)
Q Consensus 108 fIeLir~~~~~eAl~yar 125 (317)
| +||.+.+++|-+.+-
T Consensus 448 Y--mLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 448 Y--MLRANEIEEAEEVLS 463 (700)
T ss_pred H--HHHccccHHHHHHHH
Confidence 3 466666666665554
No 60
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=23.46 E-value=1.6e+02 Score=23.24 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHhcccC
Q psy11905 102 HLQQLHLLELIRENKIEEALHFAQEQLSESG 132 (317)
Q Consensus 102 ~L~~q~fIeLir~~~~~eAl~yar~~l~~~~ 132 (317)
-=.--..+|||+.|.-..|+.||++.+..+.
T Consensus 49 aPYErr~mELLkv~kdKrAlKfaKkRlGth~ 79 (98)
T PTZ00196 49 SPYERRMIELLKVGKDKRALKYAKKRLGTHK 79 (98)
T ss_pred cHHHHHHHHHHHhcchHHHHHHHHHHhhhHH
Confidence 3345677899999988999999999987765
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=23.12 E-value=8.1e+02 Score=24.94 Aligned_cols=57 Identities=18% Similarity=0.061 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHH-hCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy11905 28 MNKLIMNYLVTEGFKEAAEKFQQE-SGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNE 87 (317)
Q Consensus 28 Ln~lI~~yL~r~Gy~dtA~~f~~E-s~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~ 87 (317)
.....+.-+...|..+.|....+. ..+.|.. .... .....-....|+.++|++++.+
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~--~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAG--ITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhH--HHHHHHHHhccCHHHHHHHHHH
Confidence 334445555556655544433333 3443321 1111 1112223445666666666554
No 62
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=23.09 E-value=97 Score=17.61 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=10.5
Q ss_pred HHHHcCCHHHHHHHHH
Q psy11905 71 DAIQNGRIQEATALVN 86 (317)
Q Consensus 71 ~~I~~gdi~~Al~w~~ 86 (317)
-....||+++|..++.
T Consensus 10 ~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 10 ALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3456677777777654
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=22.80 E-value=6.1e+02 Score=23.40 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=45.9
Q ss_pred HHHHHHHHHhChHHHHHHHHHH-hCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHH
Q psy11905 30 KLIMNYLVTEGFKEAAEKFQQE-SGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHL 108 (317)
Q Consensus 30 ~lI~~yL~r~Gy~dtA~~f~~E-s~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~f 108 (317)
.+.+.-+..+|.++-|....+. ..+.+. +......+-.| ....|++++|++++.+.-+.. ..++.+........-
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i--~~~~g~~~eA~~~l~~~l~~~-~~~~~~~~~~~~~la 193 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHV--LEMQGRFKEGIAFMESWRDTW-DCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHH--HHHcCCHHHHHHHHHhhhhcc-CCCcchhHHHHHHHH
Confidence 3445556667765555444443 333322 22222222222 235788888888877643211 112222222211111
Q ss_pred HHHHHhcchHHHHHHHHHHh
Q psy11905 109 LELIRENKIEEALHFAQEQL 128 (317)
Q Consensus 109 IeLir~~~~~eAl~yar~~l 128 (317)
.-++..|+.++|+.+.++.+
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 22456678888888777654
No 64
>KOG3060|consensus
Probab=22.62 E-value=6.5e+02 Score=23.70 Aligned_cols=63 Identities=24% Similarity=0.195 Sum_probs=38.4
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCC
Q psy11905 66 RIMIRDAIQ---NGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQ 133 (317)
Q Consensus 66 r~~I~~~I~---~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~ 133 (317)
|..+..+++ .|+.++|++..+. ++..+ +..|-.++-+.+-+--.|+..+||.-....+..|-.
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~----lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~ 152 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYES----LLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN 152 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHH----HhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC
Confidence 344444442 5677777776543 44443 566666676666665667777777777766666654
No 65
>KOG0396|consensus
Probab=22.44 E-value=2.3e+02 Score=27.78 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=44.3
Q ss_pred HHHHHHHhChHHHHHHHHHHhCCC---CCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhc
Q psy11905 32 IMNYLVTEGFKEAAEKFQQESGIT---PSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLD 94 (317)
Q Consensus 32 I~~yL~r~Gy~dtA~~f~~Es~l~---~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~ 94 (317)
|-+-|.+.. +..|-++++|-... ..+.+|.-...++..+.|+.+++..||+.++.++...-+
T Consensus 159 I~~sll~~~-l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~ 223 (389)
T KOG0396|consen 159 IRDSLLAGE-LEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAK 223 (389)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhh
Confidence 444444333 66677777776433 344566677788999999999999999999999865543
No 66
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=22.40 E-value=4.7e+02 Score=26.26 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHH
Q psy11905 43 EAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALH 122 (317)
Q Consensus 43 dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~ 122 (317)
+.|..+.++++-....|.+.+...-.-+.++.+||.+.|-+..+.. +. ++.....=.+--|||-=+.|+.+.|..
T Consensus 101 ~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAM----l~-dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 101 SLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAM----LD-DPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHH----hc-ChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 5566666666644567788888888999999999999998776543 22 232222222344788888999999999
Q ss_pred HHHH
Q psy11905 123 FAQE 126 (317)
Q Consensus 123 yar~ 126 (317)
||-.
T Consensus 176 yAe~ 179 (531)
T COG3898 176 YAER 179 (531)
T ss_pred HHHH
Confidence 9875
No 67
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=22.27 E-value=1.3e+02 Score=18.49 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=13.4
Q ss_pred HHHHHHHH--cCCHHHHHHHH
Q psy11905 67 IMIRDAIQ--NGRIQEATALV 85 (317)
Q Consensus 67 ~~I~~~I~--~gdi~~Al~w~ 85 (317)
..++.++. .||++.|++|+
T Consensus 16 ~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 16 EEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 45555554 57899999986
No 68
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=22.00 E-value=3e+02 Score=21.13 Aligned_cols=55 Identities=9% Similarity=0.253 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHH
Q psy11905 28 MNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATAL 84 (317)
Q Consensus 28 Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w 84 (317)
..+.+.+.|+..+-.|.+..|..+.=.+ .+.+.+..|..|...+.+|....+|+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~--~e~~~Ls~R~~I~~ll~~G~S~~eIA~ 58 (88)
T TIGR02531 4 LLDELFDAILTLKNREECYRFFDDIATI--NEIQSLAQRLQVAKMLKQGKTYSDIEA 58 (88)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCH--HHHHhhhHHHHHHHHHHCCCCHHHHHH
Confidence 4567888999999999999998876553 344568889999999999976666544
No 69
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=21.40 E-value=2.8e+02 Score=19.04 Aligned_cols=54 Identities=22% Similarity=0.131 Sum_probs=36.3
Q ss_pred HHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcc
Q psy11905 72 AIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSE 130 (317)
Q Consensus 72 ~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~ 130 (317)
.+..++++.|++.++.. +..++. ...++...=.=+...|+..+|++...+-+..
T Consensus 5 ~~~~~~~~~A~~~~~~~----l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERA----LELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHH----HHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46789999999998764 333333 3344444444456678999999988876643
No 70
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=20.89 E-value=7.3e+02 Score=23.61 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=36.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy11905 20 TIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNE 87 (317)
Q Consensus 20 ~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~ 87 (317)
.++++....-++.+.-|...|.++-...|+++ -.++...++| |..++..|+..+|..++..
T Consensus 202 ~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepF-----v~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 202 EFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPF-----VEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHH-----HHHHHHCCCHHHHHHHHHh
Confidence 34566666666777777777777777776654 2233444444 3445566666677666655
No 71
>KOG0989|consensus
Probab=20.53 E-value=7.3e+02 Score=24.06 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=43.8
Q ss_pred HHHHcCCHHHHHHHHHhhChhhhcCC-Ccchh-------hhhHHHHHHHHHhcchHHHHHHHHHHhccc
Q psy11905 71 DAIQNGRIQEATALVNELYPELLDND-RYIYF-------HLQQLHLLELIRENKIEEALHFAQEQLSES 131 (317)
Q Consensus 71 ~~I~~gdi~~Al~w~~~~~p~L~~~~-s~LeF-------~L~~q~fIeLir~~~~~eAl~yar~~l~~~ 131 (317)
-.+-.||+-.|+..+++..+.-.... +-..+ .-....++++.++++..+-++|+|..+..-
T Consensus 217 ~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg 285 (346)
T KOG0989|consen 217 AKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSG 285 (346)
T ss_pred HHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhc
Confidence 34568999999999999887322222 21222 234678899999999999999999766543
No 72
>KOG0292|consensus
Probab=20.44 E-value=25 Score=38.09 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q psy11905 26 SDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNEL 88 (317)
Q Consensus 26 ~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~ 88 (317)
+.+-+.|..||...||.++|-.|.++..+. .--+|..||++.|++.+.+.
T Consensus 620 ~LvGqaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkl 669 (1202)
T KOG0292|consen 620 NLVGQAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKL 669 (1202)
T ss_pred CcccHHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhc
Confidence 345678899999999999999998876543 23345566666666655543
No 73
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.25 E-value=7.8e+02 Score=23.77 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCHH-----HHHHHHHHHH-HHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11905 13 TWLNKLETIHIQRS-----DMNKLIMNYL-VTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVN 86 (317)
Q Consensus 13 ~w~~~~~~v~~~~~-----~Ln~lI~~yL-~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~ 86 (317)
+|..+.+-..-+.+ .++.+++-.. .+.|-.+.|.....++.-..+...-...-+. .+-.+..|+.+.|++.++
T Consensus 99 d~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~-a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 99 DYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR-VRIQLARNENHAARHGVD 177 (398)
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH-HHHHHHCCCHHHHHHHHH
Q ss_pred hhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHH
Q psy11905 87 ELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQE 126 (317)
Q Consensus 87 ~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~ 126 (317)
... +....++.....+.... ++.|+..+|++....
T Consensus 178 ~~~-~~~P~~~~al~ll~~~~----~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 178 KLL-EVAPRHPEVLRLAEQAY----IRTGAWSSLLDILPS 212 (398)
T ss_pred HHH-hcCCCCHHHHHHHHHHH----HHHHhHHHHHHHHHH
Done!