Query psy11905
Match_columns 317
No_of_seqs 244 out of 809
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 21:57:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuj_A Platelet-activating fac 94.1 0.065 2.2E-06 40.4 4.8 33 25-57 10-42 (88)
2 2xtc_A F-box-like/WD repeat-co 92.8 0.11 3.8E-06 39.3 4.2 35 22-56 2-36 (90)
3 1vyh_C Platelet-activating fac 74.5 0.63 2.1E-05 43.4 0.0 32 25-56 8-39 (410)
4 2d68_A FOP, FGFR1OP; alpha hel 73.3 4.1 0.00014 30.1 4.2 31 25-55 18-48 (82)
5 2nxp_A Transcription initiatio 71.6 6.6 0.00022 32.3 5.6 79 82-163 35-113 (156)
6 3u4t_A TPR repeat-containing p 58.8 54 0.0019 27.0 9.3 56 72-129 47-102 (272)
7 2j4b_A TAF5, transcription ini 58.8 13 0.00045 29.9 4.9 58 82-147 16-77 (138)
8 2xz2_A CSTF-50, isoform B; RNA 57.7 25 0.00087 24.7 5.5 33 24-56 15-47 (66)
9 2xcb_A PCRH, regulatory protei 51.4 74 0.0025 23.8 9.7 92 30-129 22-114 (142)
10 2ho1_A Type 4 fimbrial biogene 50.3 1E+02 0.0034 25.0 12.1 14 74-87 117-130 (252)
11 2j49_A Transcription initiatio 49.9 7 0.00024 32.0 1.9 46 98-147 34-79 (148)
12 2y4t_A DNAJ homolog subfamily 48.6 86 0.0029 28.1 9.5 60 69-129 264-323 (450)
13 2vgx_A Chaperone SYCD; alterna 45.7 99 0.0034 23.6 10.5 92 30-129 25-117 (148)
14 2dna_A Unnamed protein product 45.4 8.4 0.00029 27.3 1.5 25 66-90 34-60 (67)
15 2cp9_A EF-TS, EF-TSMT, elongat 42.2 63 0.0022 22.4 5.6 23 66-88 24-48 (64)
16 3ieg_A DNAJ homolog subfamily 38.2 1.8E+02 0.0062 24.5 11.5 59 26-87 154-213 (359)
17 2lni_A Stress-induced-phosphop 37.3 1.1E+02 0.0037 21.6 9.4 93 30-130 20-113 (133)
18 1a17_A Serine/threonine protei 36.4 1.3E+02 0.0044 22.3 11.3 13 74-86 93-105 (166)
19 1whc_A RSGI RUH-027, UBA/UBX 3 34.3 40 0.0014 23.2 3.6 26 66-91 23-51 (64)
20 2bwb_A Ubiquitin-like protein 34.0 17 0.00057 23.5 1.4 21 66-86 22-44 (46)
21 2vq2_A PILW, putative fimbrial 33.9 1.7E+02 0.0056 22.8 10.8 16 113-128 125-140 (225)
22 2knz_A Ubiquilin-4; cytoplasm, 33.0 42 0.0014 22.1 3.4 24 66-89 26-51 (53)
23 3mkr_A Coatomer subunit epsilo 32.8 2.4E+02 0.0081 24.3 11.2 89 28-128 67-157 (291)
24 2dah_A Ubiquilin-3; UBA domain 32.5 21 0.00071 23.9 1.8 23 66-88 24-48 (54)
25 1wr1_B Ubiquitin-like protein 32.4 20 0.00069 24.4 1.7 23 66-88 32-56 (58)
26 3q15_A PSP28, response regulat 32.1 87 0.003 27.8 6.6 29 23-51 7-37 (378)
27 3sxm_A Transcriptional regulat 31.1 55 0.0019 24.9 4.4 29 61-89 98-126 (140)
28 1wgn_A UBAP1, ubiquitin associ 30.7 53 0.0018 22.8 3.6 24 66-89 33-58 (63)
29 1vej_A Riken cDNA 4931431F19; 30.6 20 0.00069 25.8 1.5 24 66-89 44-69 (74)
30 3vtx_A MAMA; tetratricopeptide 28.1 2E+02 0.0068 21.9 11.0 59 27-87 40-98 (184)
31 1a17_A Serine/threonine protei 27.9 1.3E+02 0.0043 22.3 6.0 16 112-127 128-143 (166)
32 2y4t_A DNAJ homolog subfamily 27.1 3.3E+02 0.011 24.1 10.7 112 9-129 10-122 (450)
33 1ify_A HHR23A, UV excision rep 26.7 49 0.0017 21.4 2.8 24 66-89 22-47 (49)
34 3qou_A Protein YBBN; thioredox 26.5 3E+02 0.01 23.4 10.3 113 10-130 101-214 (287)
35 3uq3_A Heat shock protein STI1 26.2 2.4E+02 0.0083 22.3 10.8 97 25-129 138-235 (258)
36 2jy5_A Ubiquilin-1; UBA, alter 26.0 49 0.0017 21.7 2.7 22 66-87 27-50 (52)
37 3sjr_A Uncharacterized protein 25.6 2.6E+02 0.0089 23.0 7.4 65 83-148 99-163 (175)
38 3hym_B Cell division cycle pro 25.6 2.4E+02 0.0083 23.4 8.1 119 4-129 1-119 (330)
39 2g3q_A Protein YBL047C; endocy 25.2 69 0.0024 19.8 3.2 22 67-88 19-42 (43)
40 1bhd_A Utrophin; calponin homo 24.9 31 0.0011 26.8 1.8 22 283-306 13-34 (118)
41 1z96_A DNA-damage, UBA-domain 24.0 76 0.0026 19.0 3.2 11 75-85 29-39 (40)
42 1vek_A UBP14, ubiquitin-specif 23.0 77 0.0026 23.1 3.6 25 66-90 43-70 (84)
43 4gco_A Protein STI-1; structur 22.9 2.3E+02 0.0078 20.8 10.8 94 28-129 15-109 (126)
44 2xpi_A Anaphase-promoting comp 22.5 4.6E+02 0.016 24.2 10.7 112 11-126 103-225 (597)
45 3ro2_A PINS homolog, G-protein 22.4 3.2E+02 0.011 22.4 9.4 98 31-129 10-111 (338)
46 2dak_A Ubiquitin carboxyl-term 22.4 73 0.0025 21.6 3.2 26 66-91 23-50 (63)
47 1wji_A Tudor domain containing 22.1 89 0.0031 21.4 3.6 24 67-90 24-49 (63)
48 2v5f_A Prolyl 4-hydroxylase su 21.4 2.2E+02 0.0077 20.2 7.1 58 71-128 14-73 (104)
49 3mkr_A Coatomer subunit epsilo 21.3 3.9E+02 0.013 22.8 11.7 98 23-132 98-197 (291)
50 3cv0_A Peroxisome targeting si 21.3 3.5E+02 0.012 22.3 8.4 115 11-131 191-316 (327)
51 4gcn_A Protein STI-1; structur 21.1 2.5E+02 0.0084 20.5 10.9 98 30-131 12-113 (127)
52 2pl2_A Hypothetical conserved 21.1 3.2E+02 0.011 21.9 9.1 100 22-130 69-180 (217)
53 4b4t_R RPN7, 26S proteasome re 21.0 4.1E+02 0.014 24.6 9.3 107 25-133 130-240 (429)
54 2crn_A Ubash3A protein; compac 20.6 93 0.0032 21.3 3.4 25 66-90 23-50 (64)
55 2eap_A Lymphocyte cytosolic pr 20.5 79 0.0027 23.5 3.1 24 31-55 26-49 (90)
56 3edt_B KLC 2, kinesin light ch 20.3 3.3E+02 0.011 21.7 9.7 105 26-130 43-156 (283)
57 1bkr_A Spectrin beta chain; fi 20.3 54 0.0018 24.9 2.3 23 282-306 7-29 (109)
58 3gyz_A Chaperone protein IPGC; 20.1 3E+02 0.01 21.2 10.9 116 22-147 30-148 (151)
No 1
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=94.11 E-value=0.065 Score=40.37 Aligned_cols=33 Identities=30% Similarity=0.648 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCC
Q psy11905 25 RSDMNKLIMNYLVTEGFKEAAEKFQQESGITPS 57 (317)
Q Consensus 25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~ 57 (317)
+++||+.|++||...||.+++.+|.+|++++.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 458999999999999999999999999988743
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=92.83 E-value=0.11 Score=39.30 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q psy11905 22 HIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITP 56 (317)
Q Consensus 22 ~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~ 56 (317)
.++.+++|.+|.-||...||..+|-+|.+|+++..
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 57889999999999999999999999999998863
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=74.48 E-value=0.63 Score=43.37 Aligned_cols=32 Identities=31% Similarity=0.659 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q psy11905 25 RSDMNKLIMNYLVTEGFKEAAEKFQQESGITP 56 (317)
Q Consensus 25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~ 56 (317)
+++++++|++||..+||.+++.+|.+|.+++.
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~ 39 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM 39 (410)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCC
Confidence 56899999999999999999999999998754
No 4
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=73.27 E-value=4.1 Score=30.11 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q psy11905 25 RSDMNKLIMNYLVTEGFKEAAEKFQQESGIT 55 (317)
Q Consensus 25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~ 55 (317)
...++.+|.+||-..||.=|+..|.-|+|.+
T Consensus 18 GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 18 GRLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 4579999999999999999999999999997
No 5
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=71.63 E-value=6.6 Score=32.31 Aligned_cols=79 Identities=11% Similarity=0.004 Sum_probs=52.8
Q ss_pred HHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCCCCCCcchh
Q psy11905 82 TALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGD 161 (317)
Q Consensus 82 l~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~~~~spy~~ 161 (317)
..|+...-......=+.+.|=+.+.-|++||.+|...+|-.|.+++-+.+.. .|..+|+++.++..-....+.++..
T Consensus 35 ~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~---~~~~~i~~L~~i~~~~~l~~n~~~~ 111 (156)
T 2nxp_A 35 KHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQEC---YYQDDLRVLSSLTKKEHMKGNETML 111 (156)
T ss_dssp HHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCG---GGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHH---HHHHHHHHHhcCCCHHHHhhcHHHH
Confidence 3676654211111124689999999999999999999999998876666643 5788888888755433333444444
Q ss_pred cc
Q psy11905 162 LL 163 (317)
Q Consensus 162 Ll 163 (317)
.+
T Consensus 112 ~f 113 (156)
T 2nxp_A 112 DF 113 (156)
T ss_dssp GG
T ss_pred HH
Confidence 44
No 6
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=58.85 E-value=54 Score=27.02 Aligned_cols=56 Identities=9% Similarity=-0.060 Sum_probs=24.0
Q ss_pred HHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhc
Q psy11905 72 AIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 72 ~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~ 129 (317)
....|+++.|++.+.+--. ...++.+........-.-+...|+..+|+.+.++-+.
T Consensus 47 ~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 47 YYELAKYDLAQKDIETYFS--KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3455666666666554321 1112222111111122222344566666666665443
No 7
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=58.76 E-value=13 Score=29.86 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=41.5
Q ss_pred HHHHHhh----ChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHH
Q psy11905 82 TALVNEL----YPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMA 147 (317)
Q Consensus 82 l~w~~~~----~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~ 147 (317)
.+|++.. +|+| +.+.|=+.+.-|++||.+|...+|-+|..++-+.+.. . ..+|+++.+
T Consensus 16 ~~wv~~sld~yk~EL----~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~---~-~~~i~~L~~ 77 (138)
T 2j4b_A 16 KTWIEDSLDLFKNDL----LPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYN---K-SEEIKQFES 77 (138)
T ss_dssp HHHHHHSCHHHHHHH----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----C-HHHHHHHTT
T ss_pred HHHHHhCcHhhHHHH----HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhh---H-HHHHHHHhc
Confidence 4677664 2333 4689999999999999999999998888876655543 2 566666655
No 8
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=57.74 E-value=25 Score=24.66 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q psy11905 24 QRSDMNKLIMNYLVTEGFKEAAEKFQQESGITP 56 (317)
Q Consensus 24 ~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~ 56 (317)
+++.|-++|..-|...||..+|..+....+..+
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 477899999999999999999999999988764
No 9
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=51.36 E-value=74 Score=23.82 Aligned_cols=92 Identities=12% Similarity=-0.105 Sum_probs=52.0
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHH
Q psy11905 30 KLIMNYLVTEGFKEAAEKFQQES-GITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHL 108 (317)
Q Consensus 30 ~lI~~yL~r~Gy~dtA~~f~~Es-~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~f 108 (317)
...+..+++.|-++.|..+.+.+ .+.+ .+......+-. -....|+.+.|+.+...-- .+...++...|.+ =
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~--~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l----g 93 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGA--CRQSLGLYEQALQSYSYGA-LMDINEPRFPFHA----A 93 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH--HHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHH----H
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHH--HHHHHhhHHHHHHHHHHHH-hcCCCCcHHHHHH----H
Confidence 34466777888776666555443 4433 33333333332 2457899999999987631 1222233333322 1
Q ss_pred HHHHHhcchHHHHHHHHHHhc
Q psy11905 109 LELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 109 IeLir~~~~~eAl~yar~~l~ 129 (317)
.-+...|+..+|+.+.++-+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 223467899999998886543
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=50.34 E-value=1e+02 Score=25.01 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=7.0
Q ss_pred HcCCHHHHHHHHHh
Q psy11905 74 QNGRIQEATALVNE 87 (317)
Q Consensus 74 ~~gdi~~Al~w~~~ 87 (317)
..|+++.|++++.+
T Consensus 117 ~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 117 EQKRYEEAYQRLLE 130 (252)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 44555555555444
No 11
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=49.91 E-value=7 Score=31.96 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=35.3
Q ss_pred cchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHH
Q psy11905 98 YIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMA 147 (317)
Q Consensus 98 ~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~ 147 (317)
.+.|=+.+.-|++||.+| ..+|-+|..++-..+.. .|..+|+++.+
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~---~~~~~i~~L~~ 79 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKD---FHGSEINRLFS 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHH---HHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHH---HHHHHHHHHhc
Confidence 578999999999999999 99998888876555542 45566666554
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=48.61 E-value=86 Score=28.08 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhc
Q psy11905 69 IRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 69 I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~ 129 (317)
..-....|+++.|++++++.-. +...++.....++...-.-+.+.|+..+|+.+.++-+.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMK-TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444556777777766655321 11111111112222222223455667777777765443
No 13
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=45.72 E-value=99 Score=23.64 Aligned_cols=92 Identities=13% Similarity=-0.089 Sum_probs=52.9
Q ss_pred HHHHHHHHHhChHHHHHHHHH-HhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHH
Q psy11905 30 KLIMNYLVTEGFKEAAEKFQQ-ESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHL 108 (317)
Q Consensus 30 ~lI~~yL~r~Gy~dtA~~f~~-Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~f 108 (317)
...+.-++..|.++-|....+ -..+.+ .+...+..+- .-....|+++.|++++.+-- .+...++...|.+ =
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~l----g 96 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLG--ACRQAMGQYDLAIHSYSYGA-VMDIXEPRFPFHA----A 96 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH--HHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHH----H
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHH--HHHHHHhhHHHHHHHHHHHH-hcCCCCchHHHHH----H
Confidence 445667777887666655444 334433 2333333222 23457899999999987641 2222333333332 1
Q ss_pred HHHHHhcchHHHHHHHHHHhc
Q psy11905 109 LELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 109 IeLir~~~~~eAl~yar~~l~ 129 (317)
.-+...|+..+|+.+.++-+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 223567899999999887554
No 14
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.42 E-value=8.4 Score=27.28 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=19.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhCh
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNELYP 90 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~~~p 90 (317)
+...+++|+ .||++.|++|+-.+-+
T Consensus 34 ~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 34 YNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 566666665 6899999999988755
No 15
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=42.18 E-value=63 Score=22.45 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=17.7
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNEL 88 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~~ 88 (317)
+.+.+++|. +||++.|+.|+.+.
T Consensus 24 ~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 24 FVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 355666664 68999999999865
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=38.17 E-value=1.8e+02 Score=24.48 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy11905 26 SDMNKLIMNYLVTEGFKEAAEKFQQES-GITPSLDLNTMENRIMIRDAIQNGRIQEATALVNE 87 (317)
Q Consensus 26 ~~Ln~lI~~yL~r~Gy~dtA~~f~~Es-~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~ 87 (317)
..+...++..+...|.++.|....+++ .+. +.+.+....+- .-....|+++.|++++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la--~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKIS--TLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHH--HHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH--HHHHHcCCHHHHHHHHHH
Confidence 345555666666666655555444433 332 22222222222 223345666666655544
No 17
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=37.32 E-value=1.1e+02 Score=21.61 Aligned_cols=93 Identities=19% Similarity=-0.006 Sum_probs=50.0
Q ss_pred HHHHHHHHHhChHHHHHHH-HHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHH
Q psy11905 30 KLIMNYLVTEGFKEAAEKF-QQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHL 108 (317)
Q Consensus 30 ~lI~~yL~r~Gy~dtA~~f-~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~f 108 (317)
..++..++..|.++.|... .+-....+ .+.+.+..+- .-....|+++.|+.++.+--. +...+....+.+ =
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la--~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l----a 91 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRA--ACYTKLLEFQLALKDCEECIQ-LEPTFIKGYTRK----A 91 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHH--HHHTTTTCHHHHHHHHHHHHH-HCTTCHHHHHHH----H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHH--HHHHHhccHHHHHHHHHHHHH-hCCCchHHHHHH----H
Confidence 3345556667766665554 44445533 2333333222 234668999999998876421 111111222221 1
Q ss_pred HHHHHhcchHHHHHHHHHHhcc
Q psy11905 109 LELIRENKIEEALHFAQEQLSE 130 (317)
Q Consensus 109 IeLir~~~~~eAl~yar~~l~~ 130 (317)
.-+.+.|+..+|+.+.++-+.-
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 1234668899999998875543
No 18
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=36.44 E-value=1.3e+02 Score=22.26 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.3
Q ss_pred HcCCHHHHHHHHH
Q psy11905 74 QNGRIQEATALVN 86 (317)
Q Consensus 74 ~~gdi~~Al~w~~ 86 (317)
..|+.+.|++++.
T Consensus 93 ~~~~~~~A~~~~~ 105 (166)
T 1a17_A 93 ALGKFRAALRDYE 105 (166)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhccHHHHHHHHH
Confidence 3455555554444
No 19
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.27 E-value=40 Score=23.21 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=19.3
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHhhChh
Q psy11905 66 RIMIRDAIQ---NGRIQEATALVNELYPE 91 (317)
Q Consensus 66 r~~I~~~I~---~gdi~~Al~w~~~~~p~ 91 (317)
+...+.+++ +++++.|++|+-.|.+.
T Consensus 23 ~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 23 RGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 355556665 57999999999988653
No 20
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=33.97 E-value=17 Score=23.50 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=15.5
Q ss_pred HHHHHHHHH--cCCHHHHHHHHH
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVN 86 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~ 86 (317)
+..++.++. .||++.|++|+-
T Consensus 22 ~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 22 FDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 455566654 689999999974
No 21
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=33.91 E-value=1.7e+02 Score=22.78 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=8.7
Q ss_pred HhcchHHHHHHHHHHh
Q psy11905 113 RENKIEEALHFAQEQL 128 (317)
Q Consensus 113 r~~~~~eAl~yar~~l 128 (317)
..|+..+|+.+.++-+
T Consensus 125 ~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 125 KQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4455666666555443
No 22
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=33.02 E-value=42 Score=22.11 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=17.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhC
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNELY 89 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~~~ 89 (317)
+...+.++. .||++.|++|+-.+-
T Consensus 26 ~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 26 REANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 455566654 689999999987653
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=32.77 E-value=2.4e+02 Score=24.25 Aligned_cols=89 Identities=7% Similarity=0.030 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHH-hCCC-CCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhH
Q psy11905 28 MNKLIMNYLVTEGFKEAAEKFQQE-SGIT-PSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQ 105 (317)
Q Consensus 28 Ln~lI~~yL~r~Gy~dtA~~f~~E-s~l~-~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~ 105 (317)
.-..+++|+...|-.+.|....++ .... .+.+.... ...-.-....|+++.|++++++ | ...+..+.
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~--~~la~~~~~~g~~~~Al~~l~~--~------~~~~~~~~- 135 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL--LMAASIYFYDQNPDAALRTLHQ--G------DSLECMAM- 135 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--HHHHHHHHHTTCHHHHHHHHTT--C------CSHHHHHH-
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHCCCHHHHHHHHhC--C------CCHHHHHH-
Confidence 445566677777654444433333 1111 11111111 1111223466777777777765 1 12222111
Q ss_pred HHHHHHHHhcchHHHHHHHHHHh
Q psy11905 106 LHLLELIRENKIEEALHFAQEQL 128 (317)
Q Consensus 106 q~fIeLir~~~~~eAl~yar~~l 128 (317)
.-.-+++.|+.++|+.+.++-+
T Consensus 136 -l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 136 -TVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHCCCHHHHHHHHHHHH
Confidence 1112345677777777766544
No 24
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.46 E-value=21 Score=23.89 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=16.9
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNEL 88 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~~ 88 (317)
+...+.+|. .||++.|++|+-.+
T Consensus 24 ~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 24 REANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344455554 78999999999765
No 25
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=32.42 E-value=20 Score=24.42 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=17.1
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNEL 88 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~~ 88 (317)
+..++.+|. .||++.|++|+-.+
T Consensus 32 ~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 32 FDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 456566664 68999999998654
No 26
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=32.09 E-value=87 Score=27.84 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHH--HHhChHHHHHHHHHH
Q psy11905 23 IQRSDMNKLIMNYL--VTEGFKEAAEKFQQE 51 (317)
Q Consensus 23 ~~~~~Ln~lI~~yL--~r~Gy~dtA~~f~~E 51 (317)
+....+..+|-++- ++.+.++.|..+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~ 37 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAE 37 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 45556666666665 667777777766665
No 27
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=31.06 E-value=55 Score=24.95 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q psy11905 61 NTMENRIMIRDAIQNGRIQEATALVNELY 89 (317)
Q Consensus 61 e~~~~r~~I~~~I~~gdi~~Al~w~~~~~ 89 (317)
..+.+-..|.++|.+||.+.|.+.+..|-
T Consensus 98 ~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl 126 (140)
T 3sxm_A 98 VSNREHKELIERIISGDKEGAIEKLKEHL 126 (140)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788899999999999999999988874
No 28
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.68 E-value=53 Score=22.75 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=18.1
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhC
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNELY 89 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~~~ 89 (317)
+..-+.+++ .||++.|++|+-.|-
T Consensus 33 ~~qA~kALKat~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 33 YECVLRAMKKKGENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 455666665 679999999997763
No 29
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.55 E-value=20 Score=25.76 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=18.5
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhC
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNELY 89 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~~~ 89 (317)
|..++.+|+ .||++.|++|+-.+-
T Consensus 44 r~~~~~AL~~t~Gnve~Ave~L~~~~ 69 (74)
T 1vej_A 44 RDANLQALVATDGDIHAAIEMLLGAS 69 (74)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 566666765 689999999987653
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=28.10 E-value=2e+02 Score=21.92 Aligned_cols=59 Identities=8% Similarity=-0.015 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy11905 27 DMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNE 87 (317)
Q Consensus 27 ~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~ 87 (317)
..-..++.-+...|.++.|....+.+-...+...... ...-.-....|+.+.|++...+
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~ 98 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY--YILGSANFMIDEKQAAIDALQR 98 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH--HHHHHHHHHcCCHHHHHHHHHH
Confidence 3334445555666666555554444321112222111 1122233445666666655543
No 31
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=27.85 E-value=1.3e+02 Score=22.30 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=10.3
Q ss_pred HHhcchHHHHHHHHHH
Q psy11905 112 IRENKIEEALHFAQEQ 127 (317)
Q Consensus 112 ir~~~~~eAl~yar~~ 127 (317)
+..|+..+|+++..+.
T Consensus 128 ~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 128 VKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccch
Confidence 3466777777776543
No 32
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=27.14 E-value=3.3e+02 Score=24.06 Aligned_cols=112 Identities=12% Similarity=0.014 Sum_probs=52.6
Q ss_pred CChhHHHHHHhcCCCCHHHHHHHHHHHHHHhChHHHHHH-HHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy11905 9 SSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEK-FQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNE 87 (317)
Q Consensus 9 ~~~~~w~~~~~~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~-f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~ 87 (317)
.....|.+.+..-+.+...... ++..+++.|.++.|.. |.+-....+. +... -.....-....|+++.|+..+.+
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLE-LGKKLLAAGQLADALSQFHAAVDGDPD-NYIA--YYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -------------CHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHH--HHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445555666554433334444 4455556666555554 4443333322 2222 23344556778999999998876
Q ss_pred hChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhc
Q psy11905 88 LYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 88 ~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~ 129 (317)
. .+.++.. ...+...-.-+.+.|+..+|+.+.++-+.
T Consensus 86 a----l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 86 V----IQLKMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp H----HHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H----HhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 2222221 11111112223567889999998887654
No 33
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.75 E-value=49 Score=21.39 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=18.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhC
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNELY 89 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~~~ 89 (317)
+..++.+++ .||++.|++|+-.+-
T Consensus 22 ~~~a~~AL~~~~~n~e~A~e~L~~gi 47 (49)
T 1ify_A 22 RERVVAALRASYNNPHRAVEYLLTGI 47 (49)
T ss_dssp HHHHHHHHHTTTSCSHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 577777776 468999999987653
No 34
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=26.52 E-value=3e+02 Score=23.40 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=65.7
Q ss_pred ChhHHHHHHhcCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q psy11905 10 SEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQES-GITPSLDLNTMENRIMIRDAIQNGRIQEATALVNEL 88 (317)
Q Consensus 10 ~~~~w~~~~~~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es-~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~ 88 (317)
+.+.+...+..+-.+........+.-+.+.|-.+.|....+.+ ...|. +.+.. ...-.-.+..|+.++|++++++.
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~--~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIG--LLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHH--HHHHHHHHHTTCHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHH--HHHHHHHHHCCCHHHHHHHHHhC
Confidence 4445555555554555555666777778888877777665544 44332 22222 23344566889999999998764
Q ss_pred ChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcc
Q psy11905 89 YPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSE 130 (317)
Q Consensus 89 ~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~ 130 (317)
...+++-. ......-+.+.+.+...+|+...++-+..
T Consensus 178 ----~~~~p~~~-~~~~~~~~~l~~~~~~~~a~~~l~~al~~ 214 (287)
T 3qou_A 178 ----PLQDQDTR-YQGLVAQIELLXQAADTPEIQQLQQQVAE 214 (287)
T ss_dssp ----CGGGCSHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ----chhhcchH-HHHHHHHHHHHhhcccCccHHHHHHHHhc
Confidence 22233222 22333344555666666777776665543
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=26.24 E-value=2.4e+02 Score=22.30 Aligned_cols=97 Identities=15% Similarity=0.011 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhh
Q psy11905 25 RSDMNKLIMNYLVTEGFKEAAEKFQQES-GITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHL 103 (317)
Q Consensus 25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es-~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L 103 (317)
...+...++..+...|.++.|....+++ .+.+ .+...+. ....-.+..|+++.|+.++++-- +.++.. ...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~--~l~~~~~~~~~~~~A~~~~~~al----~~~~~~-~~~ 209 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYS--NRAAALAKLMSFPEAIADCNKAI----EKDPNF-VRA 209 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH--HHHHHHHHTTCHHHHHHHHHHHH----HHCTTC-HHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHH--HHHHHHHHhCCHHHHHHHHHHHH----HhCHHH-HHH
Confidence 3445566777777888766666555443 3322 2233332 23333467889999988887641 112211 111
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHhc
Q psy11905 104 QQLHLLELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 104 ~~q~fIeLir~~~~~eAl~yar~~l~ 129 (317)
+...-.-+...|+..+|+.+.++-+.
T Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 210 YIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11122223456788888888876544
No 36
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=26.02 E-value=49 Score=21.70 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=16.2
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHh
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNE 87 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~ 87 (317)
+..++.++. .||++.|++|+-.
T Consensus 27 ~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 27 REANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456666664 5899999999854
No 37
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=25.63 E-value=2.6e+02 Score=22.98 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=43.7
Q ss_pred HHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHH
Q psy11905 83 ALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMAL 148 (317)
Q Consensus 83 ~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~l 148 (317)
.....-++.-...|+++.+.=....|+++|+.| ++.-..=||.-|.-+.--.......|+++-.|
T Consensus 99 sfaT~FF~~yq~qhPd~~~ee~L~~Fm~lIgGG-iEqGF~EArdIL~GL~VleG~IA~~IdkTY~L 163 (175)
T 3sjr_A 99 LGMEILMELYRQQHPDWTAPAIRQAFAPLARAG-LERGYQEACQVLRQLNVYTPAVAGQLQGLLLL 163 (175)
T ss_dssp HHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhccccCcHHHHhHHHHHHH
Confidence 444444555566899999999999999999976 66666667776666653333444555555443
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=25.58 E-value=2.4e+02 Score=23.38 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred CccCCCChhHHHHHHhcCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHH
Q psy11905 4 GAEQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATA 83 (317)
Q Consensus 4 ~~~~~~~~~~w~~~~~~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~ 83 (317)
|+=.+.+.......+.+..-+.+.+..+...|+.. |.++.|..+.++.--..+.+.+....+-.+. ...|+.+.|+.
T Consensus 1 g~y~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~~~A~~ 77 (330)
T 3hym_B 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYN-CDFKMCYKLTSVVMEKDPFHASCLPVHIGTL--VELNKANELFY 77 (330)
T ss_dssp -------------------CCCTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHH--HHHTCHHHHHH
T ss_pred CCCCcchhhhhHHHHhhchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCChhhHHHHHHHH--HHhhhHHHHHH
Q ss_pred HHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhc
Q psy11905 84 LVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 84 w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~ 129 (317)
++.+ +.+.++.-..-+..+-.+-....++..+|+.+.++-+.
T Consensus 78 ~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 119 (330)
T 3hym_B 78 LSHK----LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT 119 (330)
T ss_dssp HHHH----HHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHT
T ss_pred HHHH----HHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
No 39
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=25.16 E-value=69 Score=19.79 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=14.7
Q ss_pred HHHHHHHH--cCCHHHHHHHHHhh
Q psy11905 67 IMIRDAIQ--NGRIQEATALVNEL 88 (317)
Q Consensus 67 ~~I~~~I~--~gdi~~Al~w~~~~ 88 (317)
...+.++. .||++.|++|+-.+
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 19 EEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHcC
Confidence 33344443 67999999998653
No 40
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=24.89 E-value=31 Score=26.76 Aligned_cols=22 Identities=9% Similarity=0.394 Sum_probs=14.7
Q ss_pred HHHHhhhhhcccCCCCcccccccc
Q psy11905 283 IILWSQGELDKKKIEYPKMVDFSS 306 (317)
Q Consensus 283 l~~w~q~~l~~~~~~~~~~~~~~~ 306 (317)
|+.|+|.++..- ..-+++|+++
T Consensus 13 LL~W~q~~~~~y--~~v~v~nFs~ 34 (118)
T 1bhd_A 13 LLSWVRQTTRPY--SQVNVLNFTT 34 (118)
T ss_dssp HHHHHHHHHTTS--TTCCCCSSSG
T ss_pred HHHHHHHHhccC--CCCCCCCCcc
Confidence 678999999742 1125777764
No 41
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=24.01 E-value=76 Score=18.97 Aligned_cols=11 Identities=27% Similarity=0.601 Sum_probs=9.6
Q ss_pred cCCHHHHHHHH
Q psy11905 75 NGRIQEATALV 85 (317)
Q Consensus 75 ~gdi~~Al~w~ 85 (317)
.||++.|++|+
T Consensus 29 ~~n~e~A~~~L 39 (40)
T 1z96_A 29 NGDLDVAASFL 39 (40)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67999999986
No 42
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.03 E-value=77 Score=23.05 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=18.8
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHhhCh
Q psy11905 66 RIMIRDAIQ---NGRIQEATALVNELYP 90 (317)
Q Consensus 66 r~~I~~~I~---~gdi~~Al~w~~~~~p 90 (317)
+.+.+++++ ++|++.|++|+-.|.+
T Consensus 43 ~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 43 QLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 466666654 3589999999998864
No 43
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=22.85 E-value=2.3e+02 Score=20.77 Aligned_cols=94 Identities=15% Similarity=0.016 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhChHHHHH-HHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHH
Q psy11905 28 MNKLIMNYLVTEGFKEAAE-KFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQL 106 (317)
Q Consensus 28 Ln~lI~~yL~r~Gy~dtA~-~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q 106 (317)
..+-..+-+++.|-++.|. .|.+-..+.+ .+...+..+-. -....|+++.|++.+++-- .+...+....+.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~--~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~---- 86 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAA--CLTKLMEFQRALDDCDTCI-RLDSKFIKGYIR---- 86 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH--HHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhh--HHHhhccHHHHHHHHHHHH-HhhhhhhHHHHH----
Confidence 3444567777788665554 5555455543 33334433333 3456799999999887631 121122222222
Q ss_pred HHHHHHHhcchHHHHHHHHHHhc
Q psy11905 107 HLLELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 107 ~fIeLir~~~~~eAl~yar~~l~ 129 (317)
.=.-+...|+..+|+.+.++-+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 12223456889999999887654
No 44
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=22.46 E-value=4.6e+02 Score=24.18 Aligned_cols=112 Identities=15% Similarity=-0.001 Sum_probs=0.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhCh
Q psy11905 11 EKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYP 90 (317)
Q Consensus 11 ~~~w~~~~~~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p 90 (317)
...+.+++..+..+......++.-|+-..-+.++...|.+-... ..+.......+.-....|++++|++.+++..|
T Consensus 103 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 178 (597)
T 2xpi_A 103 AAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY----NRSSACRYLAAFCLVKLYDWQGALNLLGETNP 178 (597)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG----GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC
Q ss_pred hh-----------hcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHH
Q psy11905 91 EL-----------LDNDRYIYFHLQQLHLLELIRENKIEEALHFAQE 126 (317)
Q Consensus 91 ~L-----------~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~ 126 (317)
.- ...+...........-.-+.+.|+..+|+.+.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp TC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=22.44 E-value=3.2e+02 Score=22.36 Aligned_cols=98 Identities=13% Similarity=-0.045 Sum_probs=54.4
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCCCChh--HHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCC-CcchhhhhHH
Q psy11905 31 LIMNYLVTEGFKEAAEKFQQES-GITPSLDLN--TMENRIMIRDAIQNGRIQEATALVNELYPELLDND-RYIYFHLQQL 106 (317)
Q Consensus 31 lI~~yL~r~Gy~dtA~~f~~Es-~l~~~~~~e--~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~-s~LeF~L~~q 106 (317)
+.+..++..|.++.|..+.+++ .+.+ .+.. ...-.....-....|+++.|++++.+-.......+ .......+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4567778888877777665543 3332 2322 11222334445678999999999876432222111 1122222222
Q ss_pred HHHHHHHhcchHHHHHHHHHHhc
Q psy11905 107 HLLELIRENKIEEALHFAQEQLS 129 (317)
Q Consensus 107 ~fIeLir~~~~~eAl~yar~~l~ 129 (317)
.-.-+...|+..+|+.+.++-+.
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~ 111 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLD 111 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 22334567889999988887544
No 46
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.43 E-value=73 Score=21.62 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=18.4
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhChh
Q psy11905 66 RIMIRDAIQ--NGRIQEATALVNELYPE 91 (317)
Q Consensus 66 r~~I~~~I~--~gdi~~Al~w~~~~~p~ 91 (317)
+...+.+++ .||++.|++|+-.|.+.
T Consensus 23 ~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 23 RDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 344555554 56899999999887554
No 47
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.06 E-value=89 Score=21.36 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=17.6
Q ss_pred HHHHHHHH--cCCHHHHHHHHHhhCh
Q psy11905 67 IMIRDAIQ--NGRIQEATALVNELYP 90 (317)
Q Consensus 67 ~~I~~~I~--~gdi~~Al~w~~~~~p 90 (317)
...+.+++ .||++.|++|+-.+..
T Consensus 24 ~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 24 EASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 44555554 5689999999988754
No 48
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=21.41 E-value=2.2e+02 Score=20.16 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=31.9
Q ss_pred HHHHcCCHHHHHHHHHhhChhhhcCCC--cchhhhhHHHHHHHHHhcchHHHHHHHHHHh
Q psy11905 71 DAIQNGRIQEATALVNELYPELLDNDR--YIYFHLQQLHLLELIRENKIEEALHFAQEQL 128 (317)
Q Consensus 71 ~~I~~gdi~~Al~w~~~~~p~L~~~~s--~LeF~L~~q~fIeLir~~~~~eAl~yar~~l 128 (317)
.+...|+...|+.|..+--......+. .-.-.++.+-=.-+.+.|+..+|+.+.++-+
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345678999999998775332222110 0011111111122346788889988888654
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.29 E-value=3.9e+02 Score=22.83 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCc-chh
Q psy11905 23 IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRY-IYF 101 (317)
Q Consensus 23 ~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~-LeF 101 (317)
.+...+.-+++.-+...|-.+-|....+. +.+.+.... ...-.+..|+++.|++++++.- +.+++ ...
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~--l~~~~~~~g~~~~A~~~l~~~~----~~~p~~~~~ 166 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAM--TVQILLKLDRLDLARKELKKMQ----DQDEDATLT 166 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHH--HHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHH--HHHHHHHCCCHHHHHHHHHHHH----hhCcCcHHH
Confidence 44556677778888899988888776665 233443333 3344667899999999987642 22222 222
Q ss_pred hhhHHHHHHHH-HhcchHHHHHHHHHHhcccC
Q psy11905 102 HLQQLHLLELI-RENKIEEALHFAQEQLSESG 132 (317)
Q Consensus 102 ~L~~q~fIeLi-r~~~~~eAl~yar~~l~~~~ 132 (317)
.+. .-++.+. ..|+..+|+.+.++-+..+.
T Consensus 167 ~l~-~a~~~l~~~~~~~~eA~~~~~~~l~~~p 197 (291)
T 3mkr_A 167 QLA-TAWVSLAAGGEKLQDAYYIFQEMADKCS 197 (291)
T ss_dssp HHH-HHHHHHHHCTTHHHHHHHHHHHHHHHSC
T ss_pred HHH-HHHHHHHhCchHHHHHHHHHHHHHHhCC
Confidence 221 1233443 34788999998887666543
No 50
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=21.26 E-value=3.5e+02 Score=22.31 Aligned_cols=115 Identities=7% Similarity=-0.119 Sum_probs=0.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhCh
Q psy11905 11 EKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYP 90 (317)
Q Consensus 11 ~~~w~~~~~~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p 90 (317)
...+.++.-....+.......++..+...|..+.|....+++--..+.+......+-.+. ...|+++.|++++++
T Consensus 191 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~--- 265 (327)
T 3cv0_A 191 AAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY--SNMSQYDLAAKQLVR--- 265 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHhccHHHHHHHHHH---
Q ss_pred hhhcCCCcc-----------hhhhhHHHHHHHHHhcchHHHHHHHHHHhccc
Q psy11905 91 ELLDNDRYI-----------YFHLQQLHLLELIRENKIEEALHFAQEQLSES 131 (317)
Q Consensus 91 ~L~~~~s~L-----------eF~L~~q~fIeLir~~~~~eAl~yar~~l~~~ 131 (317)
....++.. ........-.-+.+.|+..+|..+.++-+..+
T Consensus 266 -a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 266 -AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp -HHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred -HHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
No 51
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=21.15 E-value=2.5e+02 Score=20.51 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=53.4
Q ss_pred HHHHHHHHHhChHHHHH-HHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHH
Q psy11905 30 KLIMNYLVTEGFKEAAE-KFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHL 108 (317)
Q Consensus 30 ~lI~~yL~r~Gy~dtA~-~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~f 108 (317)
+-+.+-+++.|-++.|. .|.+-..+.| .+...+..+-.+ .+..|+++.|++.+++-- .+...+......+-...+
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~--~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAV--YFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH--HHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHH--HHHhhhHHHHHHHHHHHH-HhCcccchhhHHHHHHHH
Confidence 34566677888766555 4444445543 334444444433 456899999999887532 121212211111111110
Q ss_pred ---HHHHHhcchHHHHHHHHHHhccc
Q psy11905 109 ---LELIRENKIEEALHFAQEQLSES 131 (317)
Q Consensus 109 ---IeLir~~~~~eAl~yar~~l~~~ 131 (317)
.-....|+..+|+++-++-+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 11235578999999988877643
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=21.06 E-value=3.2e+02 Score=21.85 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHHh-----------ChHHHHHHHHHH-hCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q psy11905 22 HIQRSDMNKLIMNYLVTE-----------GFKEAAEKFQQE-SGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELY 89 (317)
Q Consensus 22 ~~~~~~Ln~lI~~yL~r~-----------Gy~dtA~~f~~E-s~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~ 89 (317)
..+.......++.-+... |.++.|....+. ..+.| .+.+....+-.+ ....|++++|++++++--
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLV--YALLGERDKAEASLKQAL 145 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH--HHHcCChHHHHHHHHHHH
Confidence 333334445556666666 777666654443 34433 233333333332 456899999999987642
Q ss_pred hhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcc
Q psy11905 90 PELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSE 130 (317)
Q Consensus 90 p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~ 130 (317)
.+. .+....+.| =.-+...|+..+|+.+.++-+.-
T Consensus 146 -~~~-~~~~~~~~l----a~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 146 -ALE-DTPEIRSAL----AELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp -HHC-CCHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hcc-cchHHHHHH----HHHHHHcCCHHHHHHHHHHHHHh
Confidence 121 222222221 11235668999999999876654
No 53
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.02 E-value=4.1e+02 Score=24.60 Aligned_cols=107 Identities=12% Similarity=0.037 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhC---CCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcC-CCcch
Q psy11905 25 RSDMNKLIMNYLVTEGFKEAAEKFQQESG---ITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDN-DRYIY 100 (317)
Q Consensus 25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~---l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~-~s~Le 100 (317)
....+.-.++|+++.|-.+.|.....+.. .....-++ .-...|+-++..||+..|...+++-.....+. +..+.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid--~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKID--VMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 33456678888888886544444333321 11111122 23567888999999999999988875444332 22333
Q ss_pred hhhhHHHHHHHHHhcchHHHHHHHHHHhcccCC
Q psy11905 101 FHLQQLHLLELIRENKIEEALHFAQEQLSESGQ 133 (317)
Q Consensus 101 F~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~ 133 (317)
-.|+...-+-.+..++..+|-.+-..-+..|..
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 344444444445566777776666655555543
No 54
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.64 E-value=93 Score=21.34 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=18.7
Q ss_pred HHHHHHHHHc---CCHHHHHHHHHhhCh
Q psy11905 66 RIMIRDAIQN---GRIQEATALVNELYP 90 (317)
Q Consensus 66 r~~I~~~I~~---gdi~~Al~w~~~~~p 90 (317)
+.+.++++.. .+++.|++|+-+|.+
T Consensus 23 ~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 23 VHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 4666666663 379999999998864
No 55
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.53 E-value=79 Score=23.49 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.5
Q ss_pred HHHHHHHHhChHHHHHHHHHHhCCC
Q psy11905 31 LIMNYLVTEGFKEAAEKFQQESGIT 55 (317)
Q Consensus 31 lI~~yL~r~Gy~dtA~~f~~Es~l~ 55 (317)
-|++||-+.||.+ ++.|++...++
T Consensus 26 ~VadWLkk~g~~~-cd~lv~Kh~ID 49 (90)
T 2eap_A 26 SLADYFKKLNYKD-CEKAVKKYHID 49 (90)
T ss_dssp THHHHHHHTTCHH-HHHHHHHTTCC
T ss_pred HHHHHHHHcCCch-HHHHHHHhccC
Confidence 3789999999999 89998777665
No 56
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=20.34 E-value=3.3e+02 Score=21.71 Aligned_cols=105 Identities=11% Similarity=-0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHh-CCC----CCCChh-HHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhc---CC
Q psy11905 26 SDMNKLIMNYLVTEGFKEAAEKFQQES-GIT----PSLDLN-TMENRIMIRDAIQNGRIQEATALVNELYPELLD---ND 96 (317)
Q Consensus 26 ~~Ln~lI~~yL~r~Gy~dtA~~f~~Es-~l~----~~~~~e-~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~---~~ 96 (317)
..+-..++..+...|.++.|..+.+++ .+. ...+.. .......-.-....|+++.|++++.+--....+ .+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345566777778888777766655443 221 011111 112223333445689999999998765432211 11
Q ss_pred CcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcc
Q psy11905 97 RYIYFHLQQLHLLELIRENKIEEALHFAQEQLSE 130 (317)
Q Consensus 97 s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~ 130 (317)
.......+...-.-+...|+..+|+.+.++-+.-
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122222222222234568889999888876544
No 57
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=20.26 E-value=54 Score=24.93 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=15.0
Q ss_pred HHHHHhhhhhcccCCCCcccccccc
Q psy11905 282 KIILWSQGELDKKKIEYPKMVDFSS 306 (317)
Q Consensus 282 kl~~w~q~~l~~~~~~~~~~~~~~~ 306 (317)
.|+.|+|.++.. ..--+++|+++
T Consensus 7 ~LL~W~q~~~~~--y~~v~v~nFs~ 29 (109)
T 1bkr_A 7 ALLLWCQMKTAG--YPNVNIHNFTT 29 (109)
T ss_dssp HHHHHHHHHTTT--CTTCCCSSSSG
T ss_pred HHHHHHHHHHcc--CCCCCCCCCcc
Confidence 488999998864 21125677764
No 58
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=20.13 E-value=3e+02 Score=21.19 Aligned_cols=116 Identities=16% Similarity=0.052 Sum_probs=63.7
Q ss_pred CCCHHHHH--HHHHHHHHHhChHHHHHH-HHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCc
Q psy11905 22 HIQRSDMN--KLIMNYLVTEGFKEAAEK-FQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRY 98 (317)
Q Consensus 22 ~~~~~~Ln--~lI~~yL~r~Gy~dtA~~-f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~ 98 (317)
..+++... .-.+.-+++.|.++.|.. |.+-..+.| .+.+.+..+-. -....|++++|++...+-- .+...++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~--~~~~~g~~~~Ai~~~~~al-~l~P~~~~ 105 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAA--IYQIKEQFQQAADLYAVAF-ALGKNDYT 105 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH--HHHHTTCHHHHHHHHHHHH-HHSSSCCH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH--HHHHHccHHHHHHHHHHHH-hhCCCCcH
Confidence 44554433 345566677776655554 444445543 23333333322 3346799999998876531 23233344
Q ss_pred chhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHH
Q psy11905 99 IYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMA 147 (317)
Q Consensus 99 LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~ 147 (317)
..|.+= .-+...|+..+|+.+.++-+.-... +......+.++.
T Consensus 106 ~~~~lg----~~~~~lg~~~eA~~~~~~al~l~~~--~~~~~~A~~ll~ 148 (151)
T 3gyz_A 106 PVFHTG----QCQLRLKAPLKAKECFELVIQHSND--EKLKIKAQSYLD 148 (151)
T ss_dssp HHHHHH----HHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHcCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 444332 2234678999999999986654432 234445555444
Done!