RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11905
         (317 letters)



>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH
          alpha) N-terminal domain {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 76

 Score = 29.7 bits (67), Expect = 0.094
 Identities = 11/31 (35%), Positives = 22/31 (70%)

Query: 24 QRSDMNKLIMNYLVTEGFKEAAEKFQQESGI 54
          QR ++N+ I +YL + G++EA   F++E+ +
Sbjct: 6  QRDELNRAIADYLRSNGYEEAYSVFKKEAEL 36


>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus
          subtilis [TaxId: 1423]}
          Length = 223

 Score = 31.0 bits (70), Expect = 0.13
 Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 7  QSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENR 66
          ++S + + +  L          N+ I + LV + +K      ++   +   +D    +  
Sbjct: 35 KASDQASKVGSLI---FDPVGTNQYIKDELVPKHWKNNIPIPKRFDFLGTDIDF--GKRD 89

Query: 67 IMI 69
           ++
Sbjct: 90 TLV 92


>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 264

 Score = 27.3 bits (60), Expect = 2.1
 Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 25/139 (17%)

Query: 70  RDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129
           ++A+  G++Q+A  L+ E   +    D  +     +L    L  +   E A         
Sbjct: 4   KNALSEGQLQQALELLIEAI-KASPKDASLRSSFIEL----LCIDGDFERADE------- 51

Query: 130 ESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTS 189
                      +L +++ L     P  S    L+  A  +K  +Q       +  +E   
Sbjct: 52  -----------QLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENE--E 98

Query: 190 PRLLNLLKIILWSQGELDK 208
                +   +     + ++
Sbjct: 99  LTKSLVSFNLSMVSQDYEQ 117


>d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus
           griseus) [TaxId: 89020]}
          Length = 136

 Score = 25.8 bits (56), Expect = 4.2
 Identities = 9/54 (16%), Positives = 17/54 (31%)

Query: 142 LERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNL 195
           L+R   +  +         D  +  H   V   L  A+  M+  ++    L   
Sbjct: 28  LDRMFKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDDVKTLFKDLSKK 81


>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 172

 Score = 25.9 bits (56), Expect = 4.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 115 NKIEEALHFAQEQLSESGQSDPDILNELERTMALLA 150
           N +E     A  QL+ +G+   +I +++E    LL 
Sbjct: 1   NNVENTAKEALHQLAYTGREYNNIQDQIETISDLLG 36


>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of
           bifunctional FAD synthetase {Thermotoga maritima [TaxId:
           2336]}
          Length = 157

 Score = 25.6 bits (55), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 69  IRDAIQNGRIQEATAL 84
           IR+ +Q GR++E  A 
Sbjct: 139 IRNLVQEGRVEEIPAY 154


>d2i5ia1 c.6.2.8 (A:2-262) Uncharacterized protein EF3048
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 261

 Score = 26.2 bits (57), Expect = 6.1
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 7/34 (20%)

Query: 53 GITPSLDLNTMENRIMIRDAIQNGRIQEATALVN 86
          G TP++          I +A + G +   TAL  
Sbjct: 13 GYTPAVTQG-------IIEAHKRGVVTSTTALPT 39


>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine
           synthase MetH, C-terminal domain {Thermotoga maritima
           [TaxId: 2336]}
          Length = 260

 Score = 25.4 bits (55), Expect = 9.4
 Identities = 4/48 (8%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 108 LLELIRENKIEEALHFAQEQLSESGQ-----SDPDILNELERTMALLA 150
           L   +++   E  +  A+ Q+ +  +        +   ++     ++ 
Sbjct: 30  LWAEMQKGNEEIVIKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQ 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0539    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,089,887
Number of extensions: 48156
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 20
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)