Query psy11906
Match_columns 268
No_of_seqs 140 out of 1121
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 21:57:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 1.3E-70 2.8E-75 495.4 19.7 247 17-265 15-265 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 2.2E-68 4.8E-73 480.0 14.0 235 28-266 1-250 (250)
3 PTZ00251 fatty acid elongase; 100.0 5.9E-68 1.3E-72 481.4 12.3 241 18-268 11-272 (272)
4 KOG3072|consensus 100.0 2.6E-55 5.7E-60 393.3 10.5 221 31-261 37-268 (282)
5 COG5548 Small integral membran 44.6 17 0.00036 28.3 2.0 14 49-62 69-82 (105)
6 KOG3187|consensus 35.8 1.8E+02 0.004 26.0 7.4 133 63-206 9-142 (223)
7 PF07851 TMPIT: TMPIT-like pro 26.9 3.3E+02 0.0072 25.8 7.9 105 146-257 184-316 (330)
8 KOG3071|consensus 25.3 1.1E+02 0.0023 28.4 4.2 66 200-266 194-262 (274)
9 PF11119 DUF2633: Protein of u 15.6 1.5E+02 0.0032 21.0 2.3 15 240-254 12-26 (59)
10 PRK00753 psbL photosystem II r 15.5 2.8E+02 0.006 17.9 3.3 26 230-255 13-38 (39)
No 1
>KOG3071|consensus
Probab=100.00 E-value=1.3e-70 Score=495.36 Aligned_cols=247 Identities=40% Similarity=0.692 Sum_probs=227.8
Q ss_pred hhcCCCccccccccCCChhHHHHHHHhhhhhhhcccccccCCCCCccchhhHhHHHHHHHHHHHHHHHHH-HHHh-cCce
Q psy11906 17 EDLADPRTKDFFLIGSPIPGLCLLAFYNYFVHNLGPRFMEDRKPFKLDRFMIYYNIVQIVASLYLFIEAS-KVWL-FEYN 94 (268)
Q Consensus 17 ~~~~d~r~~~wpl~~s~~~~~~~~~~Yl~~V~~~g~~~M~~r~p~~L~~~~~~~N~~l~~~S~~~~~~~~-~~~~-~~~~ 94 (268)
....|+|++ ||++++|+++..++++|+ +|..+||++|+||||++||.++.+||+.|++.|++++.+.. ..+. .+|+
T Consensus 15 ~~~~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~ 92 (274)
T KOG3071|consen 15 RWSPDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYN 92 (274)
T ss_pred cCCCCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 345677766 999999999999999999 77789999999999999999999999999999999777766 5554 4799
Q ss_pred eeeccCCCCCCcccchhhheeeeehhhhhhcccceeeeeeeeCCCCceeEEEeecchhhhhhhhhcccccccchhHHHHH
Q psy11906 95 WKCQPIDNSTDEKALNVIRLCYLYFWLKLIDLTDTIIFVLRKKFSSVSFLHVYHHTGMVMLTWSGVKWFPGGHDTWIGWL 174 (268)
Q Consensus 95 ~~C~~~~~~~~~~~~~~~~~~~~fylSK~~El~DTvf~VLrkK~~qlsFLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~l 174 (268)
+.|+++++++.+..+++.+++|+||+||++||+||+|+|||||+||+||||+|||++|++.+|.++++.++|+.++.+.+
T Consensus 93 l~c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~l 172 (274)
T KOG3071|consen 93 LRCQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILL 172 (274)
T ss_pred eEEEecCCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeeh
Confidence 99999988888888999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCccchhhhhhhhhhHHHHHHHHHHhhhhhe-ecCCCCCCcHH-HHHHHHHHHHHHHHHHHH
Q psy11906 175 NSIVHVVMYGYYLLCVLQPQYKTSIWWKKHLTQMQMIQFLLNSIHSLQI-LFYPDCGYPKW-LVLIIVPQNFFMFYLFYR 252 (268)
Q Consensus 175 Ns~VH~iMY~YY~lsa~g~~~~~~~~~k~~IT~~Qi~QF~~~~~~~~~~-~~~~~C~~~~~-~~~~~~~~~~s~l~LF~~ 252 (268)
|++||++||+||++||+|+|+++.+|||+++|.+|++||++..+|..+. +++++|..+.+ ++..+.++.++++.||+|
T Consensus 173 Ns~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~n 252 (274)
T KOG3071|consen 173 NSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSN 252 (274)
T ss_pred hhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 66668999887 888888999999999999
Q ss_pred HHHHHcCCCCccc
Q psy11906 253 FYINAYCDNSKAK 265 (268)
Q Consensus 253 Fy~~~Y~~~~~~~ 265 (268)
||+|+|+|+++++
T Consensus 253 FY~~tY~k~~~~~ 265 (274)
T KOG3071|consen 253 FYIKTYKKPKKKK 265 (274)
T ss_pred HHHHHhccccccc
Confidence 9999999854443
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.2e-68 Score=479.96 Aligned_cols=235 Identities=40% Similarity=0.753 Sum_probs=209.6
Q ss_pred cccCCChhHHHHHHHhhhhhhhcccccccCCCCCccchhhHhHHHHHHHHHHHHHHHHH-HHH-----hcCceeeeccCC
Q psy11906 28 FLIGSPIPGLCLLAFYNYFVHNLGPRFMEDRKPFKLDRFMIYYNIVQIVASLYLFIEAS-KVW-----LFEYNWKCQPID 101 (268)
Q Consensus 28 pl~~s~~~~~~~~~~Yl~~V~~~g~~~M~~r~p~~L~~~~~~~N~~l~~~S~~~~~~~~-~~~-----~~~~~~~C~~~~ 101 (268)
+|++||++++.++++|+++| ..||++||||||++||+++.+||++|+++|++++++++ ... .+.++..|++.+
T Consensus 1 Wl~~~~~~~~~~~~~Yl~~V-~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~ 79 (250)
T PF01151_consen 1 WLMSNPWFPILIVVLYLLFV-FLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVD 79 (250)
T ss_pred CcccCCHHHHHHHHHHHHHH-HHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC
Confidence 27789999999999999999 78999999999999999999999999999999999998 532 256888995442
Q ss_pred C-CCCcccchhhheeeeehhhhhhcccceeeeeeeeCCCCceeEEEeecchhhhhhhhhcccccccchhHHHHHHHHHHH
Q psy11906 102 N-STDEKALNVIRLCYLYFWLKLIDLTDTIIFVLRKKFSSVSFLHVYHHTGMVMLTWSGVKWFPGGHDTWIGWLNSIVHV 180 (268)
Q Consensus 102 ~-~~~~~~~~~~~~~~~fylSK~~El~DTvf~VLrkK~~qlsFLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~lNs~VH~ 180 (268)
. .+++...++++|.|+||+||++|++||+|+||||| |+||||||||++|++.+|.++++.++|+.++++++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~ 157 (250)
T PF01151_consen 80 FDPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHV 157 (250)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHH
Confidence 2 23444567899999999999999999999999999 59999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHhhCCCccchhhhhhhhhhHHHHHHHHHHhhhhheecC-----CCC---CCcHHHHHHHHHHHHHHHHHHHH
Q psy11906 181 VMYGYYLLCVLQPQYKTSIWWKKHLTQMQMIQFLLNSIHSLQILFY-----PDC---GYPKWLVLIIVPQNFFMFYLFYR 252 (268)
Q Consensus 181 iMY~YY~lsa~g~~~~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~~-----~~C---~~~~~~~~~~~~~~~s~l~LF~~ 252 (268)
+||+||+++|+|.| +.+.||||+||.+||+||+++++++.+.... .+| ++|......+.++++++++||.|
T Consensus 158 iMY~YY~l~a~g~~-~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~s~l~LF~~ 236 (250)
T PF01151_consen 158 IMYSYYFLSALGIR-KVPRWWKKYITSLQIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYYVSYLYLFIN 236 (250)
T ss_pred HHHHHHHHHhcccc-cchhHHHHHHhHHhhhhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999975 1346999999999999999999988877652 489 56688999999999999999999
Q ss_pred HHHHHcCCCCcccc
Q psy11906 253 FYINAYCDNSKAKK 266 (268)
Q Consensus 253 Fy~~~Y~~~~~~~k 266 (268)
||+|+|.+|+||||
T Consensus 237 Fy~~~Y~~~~~~k~ 250 (250)
T PF01151_consen 237 FYIKSYIKKKKKKK 250 (250)
T ss_pred HHHHHhCcCCCCCC
Confidence 99999999988876
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=5.9e-68 Score=481.39 Aligned_cols=241 Identities=20% Similarity=0.257 Sum_probs=206.4
Q ss_pred hcCCCccccccccCCChhHHHHHHHhhhhhhhccccccc----CCCCCc-cchhhHhHHHHHHHHHHHHHHHHH-HH---
Q psy11906 18 DLADPRTKDFFLIGSPIPGLCLLAFYNYFVHNLGPRFME----DRKPFK-LDRFMIYYNIVQIVASLYLFIEAS-KV--- 88 (268)
Q Consensus 18 ~~~d~r~~~wpl~~s~~~~~~~~~~Yl~~V~~~g~~~M~----~r~p~~-L~~~~~~~N~~l~~~S~~~~~~~~-~~--- 88 (268)
+-..+|+++| |++||++++.++++|+++|+ .||++|| +|||++ ||+++++||++|+++|++++++.+ ..
T Consensus 11 ~f~~~~~~~w-l~~~~~~~~~i~~~Yl~~V~-~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~ 88 (272)
T PTZ00251 11 HYDGHAVQKW-LASNVDICVYIAAAYLTFVF-KGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNN 88 (272)
T ss_pred cCCcHHHHHH-HHhCCHHHHHHHHHHHHHHH-HHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345788999 99999999999999999996 8999997 499999 999999999999999999999987 33
Q ss_pred -H-hcCceeeeccCCCCCCc-ccchhhheeeeehhhhhhcccceeeeeeeeCCCCceeEEEeecchhhhhhhhhcccccc
Q psy11906 89 -W-LFEYNWKCQPIDNSTDE-KALNVIRLCYLYFWLKLIDLTDTIIFVLRKKFSSVSFLHVYHHTGMVMLTWSGVKWFPG 165 (268)
Q Consensus 89 -~-~~~~~~~C~~~~~~~~~-~~~~~~~~~~~fylSK~~El~DTvf~VLrkK~~qlsFLHvYHH~~~~~~~w~~~~~~~~ 165 (268)
. .+.++..|+..+ ++ ...+++.|+|+|++||++|++||+|+||||| |+||||||||++|++.+|.++. ++
T Consensus 89 ~~~~g~~~~~C~~~~---~~~~~~~~~~~~~~f~lsK~~El~DTvF~VLRKK--qvsFLHvYHH~~~~~~~w~~~~--~g 161 (272)
T PTZ00251 89 LRKYGLHDTLCTFRE---DEFYTGKVGVAMGLFSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSYQ--QG 161 (272)
T ss_pred HHhcCcceeeecCCC---CcchhHHHHHHHHHHHHHHHHHHHhHhhhhhcCC--CchHHHHHHHHHHHHHHHHHHh--CC
Confidence 2 345788897432 33 2357899999999999999999999999999 6999999999999999999863 44
Q ss_pred cchhH-HHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhhHHHHHHHHHHhhhhheec-------CCCCCCcH-HHH
Q psy11906 166 GHDTW-IGWLNSIVHVVMYGYYLLCVLQPQYKTSIWWKKHLTQMQMIQFLLNSIHSLQILF-------YPDCGYPK-WLV 236 (268)
Q Consensus 166 ~~~~~-~~~lNs~VH~iMY~YY~lsa~g~~~~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~-------~~~C~~~~-~~~ 236 (268)
++..+ ++.+|++||++||+||+++|+|+|. ...||||+||.+||+||+++++++.+.+. .++|+++. ...
T Consensus 162 ~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~-~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 240 (272)
T PTZ00251 162 SSIWICAAAMNYFVHSIMYFYFALSEAGFKK-LVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMATA 240 (272)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHH
Confidence 44443 5899999999999999999999972 22369999999999999999998877653 24799877 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcccccC
Q psy11906 237 LIIVPQNFFMFYLFYRFYINAYCDNSKAKKLE 268 (268)
Q Consensus 237 ~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~~k~~ 268 (268)
..+.++++||++||+|||+|+|.+||||++.+
T Consensus 241 ~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~~~~~ 272 (272)
T PTZ00251 241 RGQLMIYIFNFYLFSEMFVKGYVLPRKAKAGD 272 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 77788999999999999999999988888764
No 4
>KOG3072|consensus
Probab=100.00 E-value=2.6e-55 Score=393.31 Aligned_cols=221 Identities=23% Similarity=0.352 Sum_probs=192.7
Q ss_pred CCChhHHHHHHHhhhhhhhcccccccCCCCCccchhhHhHHHHHHHHHHHHHHHHH-HH---H--hcCceeeeccCCCCC
Q psy11906 31 GSPIPGLCLLAFYNYFVHNLGPRFMEDRKPFKLDRFMIYYNIVQIVASLYLFIEAS-KV---W--LFEYNWKCQPIDNST 104 (268)
Q Consensus 31 ~s~~~~~~~~~~Yl~~V~~~g~~~M~~r~p~~L~~~~~~~N~~l~~~S~~~~~~~~-~~---~--~~~~~~~C~~~~~~~ 104 (268)
+.+...+.++++|+++| +.|+++|+||||++|++++.+||..++++|+.++..+. .. + .|..+..|++.+..+
T Consensus 37 ~~~~~si~is~~Y~v~i-f~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~~~~~~~~~~Gf~~s~C~~~~~~~ 115 (282)
T KOG3072|consen 37 EHWPLSIHISIAYLVLI-FGGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRTIPEFLAVFRAAGFKGSYCDANNLGL 115 (282)
T ss_pred hccchhHHHHHHHHHHH-HHHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCc
Confidence 33444688999999999 67999999999999999999999999999999999887 32 2 355678999876543
Q ss_pred CcccchhhheeeeehhhhhhcccceeeeeeeeCCCCceeEEEeecchhhhhhhhhcccccccchhHHHHHHHHHHHHHHH
Q psy11906 105 DEKALNVIRLCYLYFWLKLIDLTDTIIFVLRKKFSSVSFLHVYHHTGMVMLTWSGVKWFPGGHDTWIGWLNSIVHVVMYG 184 (268)
Q Consensus 105 ~~~~~~~~~~~~~fylSK~~El~DTvf~VLrkK~~qlsFLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~lNs~VH~iMY~ 184 (268)
+ ..++|+|+|.+||..|++||+|+|||||| ++|||||||++++++.|++..-.. +.+.|++.+|.+||++||+
T Consensus 116 ~----~~~fW~~~fvlSK~~ElgDT~FiVLRKrP--liFlHWYHHi~~~iy~~~~y~~~~-a~~rw~i~mNy~vHa~MY~ 188 (282)
T KOG3072|consen 116 S----VSGFWSWLFVLSKAPELGDTIFIVLRKRP--LIFLHWYHHILVLIYAWHSYIEKV-AWGRWFIWMNYLVHAFMYS 188 (282)
T ss_pred c----hHHHHHHHHHHHhhhhhhceeEEEeccCc--cEEEechhhheeeeeeeeecccCC-cCceEEEEEehhHHHHHHH
Confidence 3 46899999999999999999999999999 999999999999999999986543 4556799999999999999
Q ss_pred HHHHHhhCCCccchhhhhhhhhhHHHHHHHHHHhhhhheec---CCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy11906 185 YYLLCVLQPQYKTSIWWKKHLTQMQMIQFLLNSIHSLQILF---YPD--CGYPKWLVLIIVPQNFFMFYLFYRFYINAYC 259 (268)
Q Consensus 185 YY~lsa~g~~~~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~---~~~--C~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~ 259 (268)
||+++|+|+|+|| +..+.||.+||+||++++........ ..+ |+.+..+..++.+++++|++||+|||.++|.
T Consensus 189 YY~lrsl~ir~Pk--~vam~iTtlQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~~my~syfvLf~~Ff~~aYi 266 (282)
T KOG3072|consen 189 YYALRSLGIRLPK--SVAMAITTLQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCFLMYISYFVLFANFFYQAYI 266 (282)
T ss_pred HHHHHHcCCCCCh--HHHHHHHHHHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999875 68999999999999999875544322 223 9999999999999999999999999999999
Q ss_pred CC
Q psy11906 260 DN 261 (268)
Q Consensus 260 ~~ 261 (268)
+|
T Consensus 267 ~~ 268 (282)
T KOG3072|consen 267 KK 268 (282)
T ss_pred hh
Confidence 86
No 5
>COG5548 Small integral membrane protein [Function unknown]
Probab=44.56 E-value=17 Score=28.27 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.4
Q ss_pred hcccccccCCCCCc
Q psy11906 49 NLGPRFMEDRKPFK 62 (268)
Q Consensus 49 ~~g~~~M~~r~p~~ 62 (268)
..++|+||.|||.+
T Consensus 69 ~~~~R~~~sRKpvP 82 (105)
T COG5548 69 FFALRLVRSRKPVP 82 (105)
T ss_pred hcchhccccCCCcc
Confidence 56899999999986
No 6
>KOG3187|consensus
Probab=35.85 E-value=1.8e+02 Score=26.04 Aligned_cols=133 Identities=13% Similarity=0.203 Sum_probs=71.5
Q ss_pred cchhhHhHHHHHHHHHHHHHHHHHHHHhcCceeeeccCCCCCCcccchhhheeeeehhhhhhcccceeeeeeeeCCCCce
Q psy11906 63 LDRFMIYYNIVQIVASLYLFIEASKVWLFEYNWKCQPIDNSTDEKALNVIRLCYLYFWLKLIDLTDTIIFVLRKKFSSVS 142 (268)
Q Consensus 63 L~~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~fylSK~~El~DTvf~VLrkK~~qls 142 (268)
-+.-+.+||+.+++.-.+..+.+.....+.. ++.+ ..+ ......-++-..-+.|-..-.|=+ -|.+.=++
T Consensus 9 ~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~----~~~~---~y~--si~~~l~~~Qtla~lEi~~~~~g~-v~S~~v~t 78 (223)
T KOG3187|consen 9 KKSYLFLYNLVSFVGWIVLLLATVVLYLTKG----SPAV---LYD--SIEKVLKFCQTLALLEIINASFGL-VKSSPVVT 78 (223)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccCC----Cccc---cHH--HHHHHHHHHHHHHHHHHHHHHhcc-ccCCceee
Confidence 4567889999999885554444432221111 0100 000 011112222223333333333312 23333467
Q ss_pred eEEEeecchhhhhhhhhcccccccch-hHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhh
Q psy11906 143 FLHVYHHTGMVMLTWSGVKWFPGGHD-TWIGWLNSIVHVVMYGYYLLCVLQPQYKTSIWWKKHLT 206 (268)
Q Consensus 143 FLHvYHH~~~~~~~w~~~~~~~~~~~-~~~~~lNs~VH~iMY~YY~lsa~g~~~~~~~~~k~~IT 206 (268)
+.|+-|-..+++..-......++..+ .....+=+..-.+=|+||+.+.+|- .++.+.|-||=+
T Consensus 79 ~~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~-~p~~l~wlRYt~ 142 (223)
T KOG3187|consen 79 LFQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGV-LPKLLTWLRYTL 142 (223)
T ss_pred eeeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccC-CchhhhHhhhhh
Confidence 88888887766666655554442222 2344567888999999999999987 445556666633
No 7
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.89 E-value=3.3e+02 Score=25.85 Aligned_cols=105 Identities=21% Similarity=0.350 Sum_probs=57.8
Q ss_pred Eeecchhhhhhhhhcccccccch--------hHHHHHHHHHHHHHHHH-----HHHHhhCCCccchh-------hhh---
Q psy11906 146 VYHHTGMVMLTWSGVKWFPGGHD--------TWIGWLNSIVHVVMYGY-----YLLCVLQPQYKTSI-------WWK--- 202 (268)
Q Consensus 146 vYHH~~~~~~~w~~~~~~~~~~~--------~~~~~lNs~VH~iMY~Y-----Y~lsa~g~~~~~~~-------~~k--- 202 (268)
++||-....++-..+.+ |.|.. ..+.+.=++|+.+=|-| |-+.|+|-+-+=.+ |+-
T Consensus 184 ~~HHy~s~~~s~v~Ltw-p~~~~~~~fr~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~~mdvt~eG~~s~~~~~L 262 (330)
T PF07851_consen 184 VFHHYISTFLSGVMLTW-PDGEAYQKFRPQFLLFSLYQSVVQFLQYRYQRGCLYRLRALGKRHNMDVTVEGFQSWMWRGL 262 (330)
T ss_pred HHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCccceeeecccccchhccH
Confidence 46777766666666554 33433 23556667777777766 78999997643111 222
Q ss_pred ----hhhhhHHHHHHHHHHhhhhheecCCCCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy11906 203 ----KHLTQMQMIQFLLNSIHSLQILFYPDCGYPKWLVLIIVPQNFFMFYL-FYRFYINA 257 (268)
Q Consensus 203 ----~~IT~~Qi~QF~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~s~l~L-F~~Fy~~~ 257 (268)
|.+-..|..|+..+....-.... ++|. .+.+...+ +.|++| .+||+--.
T Consensus 263 ~fLlPfLf~~~~~q~yn~~~l~~~~~~-~~~~-ewqv~~~~----~~f~~l~~gN~~tt~ 316 (330)
T PF07851_consen 263 TFLLPFLFFGQFFQLYNAYTLFELSYH-PECR-EWQVFVCG----LLFLILFLGNFFTTL 316 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-ccch-HHHHHHHH----HHHHHHHhhhHHHHH
Confidence 45556677777655433222222 6787 33333322 333333 47887543
No 8
>KOG3071|consensus
Probab=25.25 E-value=1.1e+02 Score=28.40 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=41.6
Q ss_pred hhhh-hhhhHHHHHHHHHHhhhhheecCCCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Q psy11906 200 WWKK-HLTQMQMIQFLLNSIHSLQILFYPDCGY--PKWLVLIIVPQNFFMFYLFYRFYINAYCDNSKAKK 266 (268)
Q Consensus 200 ~~k~-~IT~~Qi~QF~~~~~~~~~~~~~~~C~~--~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~~k 266 (268)
+|++ ..|-+|++||+..++....... ..=-. -............+....|.--|.+=|.+.-+|++
T Consensus 194 ~~~lWWkky~t~vQlvqf~~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~ 262 (274)
T KOG3071|consen 194 QWYLWWKKYITIVQLVQFLILFVHTLY-VHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPK 262 (274)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhh-eeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666 7788999999888888665543 11111 12233323333467788888888888888755543
No 9
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=15.65 E-value=1.5e+02 Score=21.02 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy11906 240 VPQNFFMFYLFYRFY 254 (268)
Q Consensus 240 ~~~~~s~l~LF~~Fy 254 (268)
++..+||++||++|=
T Consensus 12 iVLLISfiIlfgRl~ 26 (59)
T PF11119_consen 12 IVLLISFIILFGRLI 26 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355789999999653
No 10
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=15.51 E-value=2.8e+02 Score=17.88 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=20.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy11906 230 GYPKWLVLIIVPQNFFMFYLFYRFYI 255 (268)
Q Consensus 230 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 255 (268)
+-++...+++........+||+++|-
T Consensus 13 ELNRTSLy~GlLlifvl~vLFssYff 38 (39)
T PRK00753 13 ELNRTSLYLGLLLVFVLGILFSSYFF 38 (39)
T ss_pred eechhhHHHHHHHHHHHHHHHHhhcc
Confidence 34566777888888899999998763
Done!