Query psy11906
Match_columns 268
No_of_seqs 140 out of 1121
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:58:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 17.9 1.8E+02 0.0062 17.6 4.4 27 229-255 10-36 (37)
2 1z2t_A Anchor peptide Ser65-Le 12.1 28 0.00097 19.1 -0.9 14 254-267 10-23 (26)
3 1d4b_A CIDE B, human cell deat 6.5 1.1E+02 0.0036 23.8 -0.1 23 127-149 95-121 (122)
4 2knu_A E1_peptide, genome poly 5.4 2.3E+02 0.0078 16.3 1.0 21 25-45 5-25 (29)
5 2p7i_A Hypothetical protein; p 5.3 2.5E+02 0.0084 22.2 1.5 21 120-140 230-250 (250)
6 2lor_A Transmembrane protein 1 6.7 1.6E+02 0.0055 22.2 0.0 27 49-80 46-72 (108)
7 2koe_A Human cannabinoid recep 4.6 66 0.0023 18.7 -1.9 16 170-185 8-23 (40)
8 1b4b_A Arginine repressor; cor 4.1 3.2E+02 0.011 18.4 1.2 10 128-137 48-57 (71)
9 3aa0_C 21MER peptide from leuc 4.1 2.6E+02 0.0088 15.3 0.5 14 49-62 7-20 (26)
10 4dkl_A MU-type opioid receptor 4.1 5.1E+02 0.017 22.4 2.9 16 171-186 427-442 (464)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=17.86 E-value=1.8e+02 Score=17.63 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy11906 229 CGYPKWLVLIIVPQNFFMFYLFYRFYI 255 (268)
Q Consensus 229 C~~~~~~~~~~~~~~~s~l~LF~~Fy~ 255 (268)
-+-++...+++........+||+++|-
T Consensus 10 VELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 10 VELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceechhhHHHHHHHHHHHHHHhhhhcc
Confidence 445677788888888999999999874
No 2
>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}
Probab=12.07 E-value=28 Score=19.15 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=8.0
Q ss_pred HHHHcCCCCccccc
Q psy11906 254 YINAYCDNSKAKKL 267 (268)
Q Consensus 254 y~~~Y~~~~~~~k~ 267 (268)
|+++|.+|-+|-|+
T Consensus 10 fvkryvrkmrklkl 23 (26)
T 1z2t_A 10 FVKRYVRKMRKLKL 23 (26)
T ss_dssp HHHHHTHHHHSCCC
T ss_pred eHHHHHHHHHhhcc
Confidence 45667666555444
No 3
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=6.48 E-value=1.1e+02 Score=23.83 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=15.8
Q ss_pred cceeeeeeeeCC----CCceeEEEeec
Q psy11906 127 TDTIIFVLRKKF----SSVSFLHVYHH 149 (268)
Q Consensus 127 ~DTvf~VLrkK~----~qlsFLHvYHH 149 (268)
=||+|+||++.+ .+..-||--||
T Consensus 95 ~nT~lmvL~~gq~W~p~~~~~~~~~~~ 121 (122)
T 1d4b_A 95 DDTCLMVLQSGQSWSPTRSGVLHHHHH 121 (122)
T ss_dssp SCCCCCEECSSCCCCCCCCSCCTTCCC
T ss_pred CCCEEEEecCCCcccCCCcceeeeccC
Confidence 689999998865 13455665555
No 4
>2knu_A E1_peptide, genome polyprotein; HCV, pretransmembrane, glycoprotein, envelope protein, transmembrane, membrane protein; NMR {Hepatitis c virus}
Probab=5.38 E-value=2.3e+02 Score=16.29 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=16.1
Q ss_pred ccccccCCChhHHHHHHHhhh
Q psy11906 25 KDFFLIGSPIPGLCLLAFYNY 45 (268)
Q Consensus 25 ~~wpl~~s~~~~~~~~~~Yl~ 45 (268)
-.|-+|.++.|.+...++|+.
T Consensus 5 mawdmMmnwspt~~~~~a~~l 25 (29)
T 2knu_A 5 MAWDMMMNWSPTAALVVAQLL 25 (29)
T ss_dssp TGGGTTCCSCCTTHHHHHHHC
T ss_pred hHHHHHhccCchHHHHHHHHH
Confidence 368888888888777777775
No 5
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=5.29 E-value=2.5e+02 Score=22.24 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=13.8
Q ss_pred hhhhhcccceeeeeeeeCCCC
Q psy11906 120 WLKLIDLTDTIIFVLRKKFSS 140 (268)
Q Consensus 120 lSK~~El~DTvf~VLrkK~~q 140 (268)
-.++.+....+++|.|||.+|
T Consensus 230 ~~~~~~~~~~i~~~~~k~~~~ 250 (250)
T 2p7i_A 230 GQQYPDLCASIFLLCEKGINQ 250 (250)
T ss_dssp HTTCGGGEEEEEEEEECC---
T ss_pred ccccchhhHHHHHHhccccCC
Confidence 355667888888888888765
No 6
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=6.67 E-value=1.6e+02 Score=22.21 Aligned_cols=27 Identities=15% Similarity=0.237 Sum_probs=20.6
Q ss_pred hcccccccCCCCCccchhhHhHHHHHHHHHHH
Q psy11906 49 NLGPRFMEDRKPFKLDRFMIYYNIVQIVASLY 80 (268)
Q Consensus 49 ~~g~~~M~~r~p~~L~~~~~~~N~~l~~~S~~ 80 (268)
+.++++.++|-|++++ ||++++++.+-
T Consensus 46 f~~Q~~vqrklpYp~q-----wniLVs~v~~s 72 (108)
T 2lor_A 46 FGLQMFIQRKFPYPLQ-----WSLLVAVVAGS 72 (108)
Confidence 4578999999999887 78777766543
No 7
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=4.60 E-value=66 Score=18.70 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11906 170 WIGWLNSIVHVVMYGY 185 (268)
Q Consensus 170 ~~~~lNs~VH~iMY~Y 185 (268)
+.+.+|+.+.|+.|+.
T Consensus 8 ~l~~~ns~lNPiIY~~ 23 (40)
T 2koe_A 8 MLCLLNSTVNPIIYAL 23 (40)
T ss_dssp HHHHHHHHSSTTTTBT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667899999988864
No 8
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=4.11 E-value=3.2e+02 Score=18.45 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=7.2
Q ss_pred ceeeeeeeeC
Q psy11906 128 DTIIFVLRKK 137 (268)
Q Consensus 128 DTvf~VLrkK 137 (268)
||+|++.|..
T Consensus 48 DTIlvi~r~~ 57 (71)
T 1b4b_A 48 DTCLIICRTP 57 (71)
T ss_dssp SEEEEEESSH
T ss_pred CEEEEEECCH
Confidence 7788887653
No 9
>3aa0_C 21MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Mus musculus}
Probab=4.10 E-value=2.6e+02 Score=15.33 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=10.4
Q ss_pred hcccccccCCCCCc
Q psy11906 49 NLGPRFMEDRKPFK 62 (268)
Q Consensus 49 ~~g~~~M~~r~p~~ 62 (268)
.+.|+-|++.+|-+
T Consensus 7 klrpkr~kkqqps~ 20 (26)
T 3aa0_C 7 KLRPKRNKKQQPTQ 20 (26)
T ss_pred hcCcchhhccCCcc
Confidence 56788888887754
No 10
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=4.08 E-value=5.1e+02 Score=22.45 Aligned_cols=16 Identities=31% Similarity=0.789 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11906 171 IGWLNSIVHVVMYGYY 186 (268)
Q Consensus 171 ~~~lNs~VH~iMY~YY 186 (268)
.+.+|+.++++.|++.
T Consensus 427 L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHh
Confidence 5678999999999863
Done!