Query psy11906
Match_columns 268
No_of_seqs 140 out of 1121
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 21:58:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11906.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11906hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 18.7 79 0.0058 17.7 4.4 27 229-255 10-36 (37)
2 d1ppjc2 f.21.1.2 (C:15-260) Mi 9.1 1.4E+02 0.01 23.5 4.1 60 202-261 20-96 (246)
3 d1d4ba_ d.15.2.1 (A:) Cell dea 8.8 33 0.0024 24.8 -0.1 12 127-138 95-106 (122)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 7.7 2.7E+02 0.02 22.0 5.4 61 202-262 33-110 (261)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 4.6 2.6E+02 0.019 14.5 2.2 13 239-251 4-16 (32)
6 d1vf5c3 f.23.23.1 (C:250-286) 4.5 22 0.0016 20.4 -2.6 10 129-138 20-29 (37)
7 d1k81a_ g.59.1.1 (A:) Zinc-bin 3.9 1.6E+02 0.012 16.4 1.0 7 139-145 17-23 (36)
8 d1q90a3 f.23.23.1 (A:248-292) 3.8 19 0.0013 21.5 -3.4 10 129-138 19-28 (45)
9 d1yqba1 d.15.1.1 (A:15-98) Ubi 3.6 2.4E+02 0.018 17.7 1.9 16 124-139 67-82 (84)
10 d1b4ba_ d.74.2.1 (A:) C-termin 3.3 2E+02 0.015 18.0 1.2 10 128-137 48-57 (71)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.74 E-value=79 Score=17.65 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy11906 229 CGYPKWLVLIIVPQNFFMFYLFYRFYI 255 (268)
Q Consensus 229 C~~~~~~~~~~~~~~~s~l~LF~~Fy~ 255 (268)
-+-++...++++......-+||+++|-
T Consensus 10 veLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 10 VELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 345577778888888888899999874
No 2
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.12 E-value=1.4e+02 Score=23.52 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=38.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhheecCCCCCCc-----------HH------HHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy11906 202 KKHLTQMQMIQFLLNSIHSLQILFYPDCGYP-----------KW------LVLIIVPQNFFMFYLFYRFYINAYCDN 261 (268)
Q Consensus 202 k~~IT~~Qi~QF~~~~~~~~~~~~~~~C~~~-----------~~------~~~~~~~~~~s~l~LF~~Fy~~~Y~~~ 261 (268)
.-.+..+=++|.+.|+.-+.+..-+.++... .+ .-..+......++-++..+|..+|+++
T Consensus 20 G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~sy~~~ 96 (246)
T d1ppjc2 20 GSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFL 96 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhcCccch
Confidence 3667777789999998877654321122111 00 112345567788889999999999653
No 3
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.76 E-value=33 Score=24.82 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=9.8
Q ss_pred cceeeeeeeeCC
Q psy11906 127 TDTIIFVLRKKF 138 (268)
Q Consensus 127 ~DTvf~VLrkK~ 138 (268)
=||+|+||++.+
T Consensus 95 ~nT~lmvL~~gq 106 (122)
T d1d4ba_ 95 DDTCLMVLQSGQ 106 (122)
T ss_dssp SCCCCCEECSSC
T ss_pred CCCEEEEECCCC
Confidence 389999998865
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.67 E-value=2.7e+02 Score=22.00 Aligned_cols=61 Identities=8% Similarity=-0.040 Sum_probs=38.9
Q ss_pred hhhhhhHHHHHHHHHHhhhhheecCCCC----------CCcHH-------HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy11906 202 KKHLTQMQMIQFLLNSIHSLQILFYPDC----------GYPKW-------LVLIIVPQNFFMFYLFYRFYINAYCDNS 262 (268)
Q Consensus 202 k~~IT~~Qi~QF~~~~~~~~~~~~~~~C----------~~~~~-------~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~ 262 (268)
.-.+..+=++|.+.|+.-+.++.-..+. +.+.. ...........++-++..+|..+|++++
T Consensus 33 G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pr 110 (261)
T d3cx5c2 33 GSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPR 110 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhccccCcc
Confidence 4677778889999998876654321111 11111 1123455677888899999999997765
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.60 E-value=2.6e+02 Score=14.54 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q psy11906 239 IVPQNFFMFYLFY 251 (268)
Q Consensus 239 ~~~~~~s~l~LF~ 251 (268)
+.+.++.|+.||-
T Consensus 4 gavfyivfialff 16 (32)
T d2e74e1 4 GAVFYIVFIALFF 16 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHH
Confidence 4455666666663
No 6
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.45 E-value=22 Score=20.36 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=6.0
Q ss_pred eeeeeeeeCC
Q psy11906 129 TIIFVLRKKF 138 (268)
Q Consensus 129 Tvf~VLrkK~ 138 (268)
-+++||+||+
T Consensus 20 Qi~lVlKKKQ 29 (37)
T d1vf5c3 20 QLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHTGG
T ss_pred HHHHHHHHHH
Confidence 3456777664
No 7
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.86 E-value=1.6e+02 Score=16.36 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=4.7
Q ss_pred CCceeEE
Q psy11906 139 SSVSFLH 145 (268)
Q Consensus 139 ~qlsFLH 145 (268)
+++.|||
T Consensus 17 ~R~~~l~ 23 (36)
T d1k81a_ 17 GRVHLLK 23 (36)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 4577776
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.80 E-value=19 Score=21.54 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=6.4
Q ss_pred eeeeeeeeCC
Q psy11906 129 TIIFVLRKKF 138 (268)
Q Consensus 129 Tvf~VLrkK~ 138 (268)
-+|+||+||+
T Consensus 19 Qi~LVLKKKQ 28 (45)
T d1q90a3 19 QVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4567777764
No 9
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.55 E-value=2.4e+02 Score=17.69 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=12.6
Q ss_pred hcccceeeeeeeeCCC
Q psy11906 124 IDLTDTIIFVLRKKFS 139 (268)
Q Consensus 124 ~El~DTvf~VLrkK~~ 139 (268)
++=.+|+.+|+|++++
T Consensus 67 i~~gsti~lv~r~~~~ 82 (84)
T d1yqba1 67 VRDGLTVHLVIKRQHR 82 (84)
T ss_dssp CCTTCEEEEEECCCCS
T ss_pred CCCCCEEEEEECCCCC
Confidence 3667899999998864
No 10
>d1b4ba_ d.74.2.1 (A:) C-terminal domain of arginine repressor {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.27 E-value=2e+02 Score=17.98 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=7.2
Q ss_pred ceeeeeeeeC
Q psy11906 128 DTIIFVLRKK 137 (268)
Q Consensus 128 DTvf~VLrkK 137 (268)
||++++.|..
T Consensus 48 DTIlii~~~~ 57 (71)
T d1b4ba_ 48 DTCLIICRTP 57 (71)
T ss_dssp SEEEEEESSH
T ss_pred CEEEEEECCH
Confidence 7888887654
Done!