RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11906
         (268 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score =  210 bits (536), Expect = 7e-68
 Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 9/246 (3%)

Query: 28  FLIGSPIPGLCLLAFYNYFVHNLGPRFMEDRKPFKLDRFMIYYNIVQIVASLYLFIEASK 87
            L+ SP P + ++  Y  FV  LGP+ M +RKPF L R +I +N+  ++ SLY F     
Sbjct: 1   PLLSSPWPVILIIVLYLVFVF-LGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLA 59

Query: 88  -VWLFEYNWKCQPIDNSTDEKALNVIRLCYLY--FWLKLIDLTDTIIFVLRKKFSSVSFL 144
                   +    +  S D  A+ +  + + Y  F  K ++L DT+  VLRKK   +SFL
Sbjct: 60  GAGWGRGLYLALCVCYSFDPGAIRMGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFL 119

Query: 145 HVYHHTGMVMLTWSGVKWFPGGHDTWIGWLNSIVHVVMYGYYLLCVLQPQYKTSIWWKKH 204
           HVYHH  M++ +W G+K+ PGGH  +I  LNS VHV+MY YY L  L  +    +WWKK+
Sbjct: 120 HVYHHATMLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKY 178

Query: 205 LTQMQMIQFLLNSIHSLQILFY---PDCGYPKWLVLII-VPQNFFMFYLFYRFYINAYCD 260
           +TQ+Q+IQF+L   H    L+      CG P    + + +       +LF  FYI +Y  
Sbjct: 179 ITQLQIIQFVLGLAHVGYALYNYTKGGCGGPFPKAVRLGLVYYVSYLFLFLNFYIKSYKK 238

Query: 261 NSKAKK 266
             K KK
Sbjct: 239 PKKKKK 244


>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
          Length = 272

 Score = 33.3 bits (76), Expect = 0.10
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 122 KLIDLTDTIIFVLRKKFSSVSFLHVYHHTGMVMLTWSGVKWFPGGHDTWI--GWLNSIVH 179
           K+ +  DT   ++  K   + FL  +HH  + +  W     +  G   WI    +N  VH
Sbjct: 122 KVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMS---YQQGSSIWICAAAMNYFVH 176

Query: 180 VVMYGYYLL 188
            +MY Y+ L
Sbjct: 177 SIMYFYFAL 185


>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed
           of eukaryotic proteins similar to Saccharomyces
           cerevisiae MPD1 protein, which contains a single redox
           active TRX domain located at the N-terminus, and an ER
           retention signal at the C-terminus indicative of an
           ER-resident protein. MPD1 has been shown to suppress the
           maturation defect of carboxypeptidase Y caused by
           deletion of the yeast PDI1 gene. Other characterized
           members of this subfamily include the Aspergillus niger
           prpA protein and Giardia PDI-1. PrpA is non-essential to
           strain viability, however, its transcript level is
           induced by heterologous protein expression suggesting a
           possible role in oxidative protein folding during high
           protein production. Giardia PDI-1 has the ability to
           refold scrambled RNase and exhibits transglutaminase
           activity.
          Length = 109

 Score = 27.3 bits (61), Expect = 3.5
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 204 HLTQMQMIQFLLNSIHSLQILFY-PDCGYPKWLV 236
            LT     + + N+ ++  + FY P CG+ K L 
Sbjct: 4   ELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLK 37


>gnl|CDD|178434 PLN02841, PLN02841, GPI mannosyltransferase.
          Length = 440

 Score = 28.6 bits (64), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 153 VMLTWSGVKWFPGGHDTWIGWLNSIVHVVMYGYYL 187
           ++L WS +K    G    + W+ S +H +M+ Y L
Sbjct: 351 LILPWSRMKLKWKGLLCILVWMGSQLHWLMWAYLL 385


>gnl|CDD|237423 PRK13553, PRK13553, fumarate reductase cytochrome b-556 subunit;
           Provisional.
          Length = 258

 Score = 28.4 bits (64), Expect = 4.0
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 197 TSIWWKKHLTQMQMIQFLLNSIHSLQILFYPDCGYPKWLVLIIVPQNFFMFYLFYRF 253
           TS+W+ +  T   M  F L S+H   +L  PD   P      +V QN ++ Y+   F
Sbjct: 121 TSLWFIQAFTGFAM--FFLASVHLYVMLTNPDKIGPYGSSDRVVSQNMWLLYIVLLF 175


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.145    0.495 

Gapped
Lambda     K      H
   0.267   0.0768    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,103,323
Number of extensions: 1339068
Number of successful extensions: 1457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1445
Number of HSP's successfully gapped: 29
Length of query: 268
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 173
Effective length of database: 6,723,972
Effective search space: 1163247156
Effective search space used: 1163247156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.0 bits)