RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11906
(268 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 31/111 (27%)
Query: 19 LADPRTK--DFFLIGSPI--PGLCLLAFYNYFV--HNLGPRFMEDRKPFK--LDRFMIYY 70
L +P +L+ PI P + ++ +Y V LG E R K
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH----- 273
Query: 71 NIVQIVASLYLFIEASKVWLFEYNWKCQPIDNSTDEKALNVIRLCYLYFWL 121
+V + + I + W S I + F++
Sbjct: 274 -SQGLVTA--VAIAETDSW------------ESFFVSVRKAIT---VLFFI 306
Score = 36.6 bits (84), Expect = 0.008
Identities = 40/285 (14%), Positives = 77/285 (27%), Gaps = 98/285 (34%)
Query: 8 AMRLYKYVNEDLADPRTKDFFLIGSPIPGLCLLAFYNYF-----VHNLGPRFMEDRKPFK 62
+ YV+ + + F + LCL F N + +H L + +++
Sbjct: 61 VGKFLGYVSSLVEPSKVGQF----DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 63 LDRFMI---YYNIVQIVASLYLFIEASKVWLFEYNWKCQPIDNSTDEKALNVIRLCYLYF 119
+ + Y + + S LF + A +L F
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSA--LFR---------AVGEGNA----QL-VAIF 160
Query: 120 --------WLK-LIDLTDT-------IIFVLRKKFSSVSFLHV----YHHTGMVMLTW-- 157
+ + L DL T +I + S + + G+ +L W
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 158 ----------------SGVKWFPGGHDTWIGWLNSIVHVVMYGYYLLCV--------LQP 193
S P IG + + H Y + L+
Sbjct: 221 NPSNTPDKDYLLSIPIS----CPL-----IG-VIQLAH-----YVVTAKLLGFTPGELRS 265
Query: 194 QYKTSIWWKKHLTQMQMI-------QFLLNSIHSLQILFYPDCGY 231
K + + L I F ++ ++ +LF+ G
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF--IGV 308
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.036
Identities = 40/264 (15%), Positives = 75/264 (28%), Gaps = 82/264 (31%)
Query: 12 YKYVNEDLADPRTKDFFLIGSPIP-----GLCLLA-FYNYFVHNLGPRFMEDRKPFKLDR 65
+K V + L+ T L + LL + + +L PR + P +L
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLS- 331
Query: 66 FMIYYNIVQIVASLYLFIEASKVWLFEYNWKCQPIDNSTDEKALNVIRLCYLYFWLKLID 125
I S+ + NWK + +K +I L +++
Sbjct: 332 --------IIAESIRDGLATWD------NWK-----HVNCDKLTTIIESS-----LNVLE 367
Query: 126 LTDTIIFVLRKKFSSVSFLHVYHHTGMVMLTWSGVKWFPGGHDTWIG-------WLNSIV 178
+ RK F +S FP I W + I
Sbjct: 368 PAE-----YRKMFDRLSV-------------------FP--PSAHIPTILLSLIWFDVIK 401
Query: 179 HVVMYGYYLLCVLQPQYKTSI---WWKKHLTQMQMIQFLLN-------SIHSLQILFY-P 227
VM V+ +K S+ K+ + I L ++H + Y
Sbjct: 402 SDVMV------VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 228 DCGYPKWLVLIIVPQNFFMFYLFY 251
+ ++ +F ++ +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGH 479
Score = 29.4 bits (65), Expect = 1.5
Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 36/146 (24%)
Query: 13 KYVNEDLADPRTKDFFLIGSPIPGLCLLAFYNYFVHNLGPRFMEDRKPFKLDRFMIYYNI 72
+ ++DL P +F Y++ H+L +R L R M++ +
Sbjct: 458 TFDSDDLIPPYLDQYF--------------YSHIGHHLKNIEHPER--MTLFR-MVFLD- 499
Query: 73 VQIVASLYLFIEASKVWLFEYNWKCQP--IDNSTD-EKALNVIRLCYLYFWLKLIDLTDT 129
+ F+E K+ W ++ + I + + + D
Sbjct: 500 -------FRFLEQ-KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD- 550
Query: 130 IIFVLRKKFSSVSFLHVYHHTGMVML 155
F+ + + L +T ++ +
Sbjct: 551 --FLPKIE----ENLICSKYTDLLRI 570
>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand,
melanin biosynthesis, metal-bindin monooxygenase,
oxidoreductase, secreted; 1.97A {Manduca sexta}
Length = 694
Score = 27.3 bits (60), Expect = 6.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 40 LAFYNYFVHNLGPRFMEDRKPFKLDRF--MIYYNIVQIVASLYL 81
+ +++ H + P D K DR + +Y QI+A
Sbjct: 210 INLHHWHWHLVYPFSASDEKIVAKDRRGELFFYMHQQIIARYNC 253
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 26.9 bits (59), Expect = 9.0
Identities = 13/172 (7%), Positives = 35/172 (20%), Gaps = 3/172 (1%)
Query: 93 YNWKCQPIDNSTDEKALNVIRLCYLYFWLKLIDLTDTIIFVLRKKFSSVSFLHVYHHTGM 152
Y T + + + + D ++F + +
Sbjct: 203 YFRGEVYDPFETLTLSEQNFDILFKDYVNSFYDAIKRATNPKVREFIVTKMGNKIANEFE 262
Query: 153 VMLTWSGVKWFPGGHDTWIGWLNSIVHVVMYGYYLLCVLQPQYKTSIWWKKHLTQMQMIQ 212
++ VH+V + + + + +
Sbjct: 263 PTRYDINERYQTHKDTLVELSKFLHVHLVKNQKLINKI---ETILLMNNETDKAFKVNQF 319
Query: 213 FLLNSIHSLQILFYPDCGYPKWLVLIIVPQNFFMFYLFYRFYINAYCDNSKA 264
+L + + + +F F Y D+ K
Sbjct: 320 RKTLRHVKNIVLRRKNKERSLYDLTDKEDNVKPKTIVFESFGGKNYSDSPKY 371
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.145 0.495
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,321,646
Number of extensions: 245808
Number of successful extensions: 559
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 15
Length of query: 268
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,133,061
Effective search space: 727418736
Effective search space used: 727418736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.6 bits)