BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11911
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 171 EYQTLADRLESWMDAHQNQIESLNKSNNMKSY--WELKAQIEFYNTLLDRSRDNFENAMR 228
+ T AD+ E W D H+ ++S + +K Y W + + D + +N R
Sbjct: 217 QLGTDADK-EQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVA------DLAESIMKNLRR 269
Query: 229 VFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFD 264
V P+S + + LYG ED + V C+ QN D
Sbjct: 270 VHPISTMI--KGLYGIKEDVFLS-VPCILGQNGISD 302
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 171 EYQTLADRLESWMDAHQNQIESLNKSNNMKSY--WELKAQIEFYNTLLDRSRDNFENAMR 228
+ T AD+ E W D H+ ++S + +K Y W + + D + +N R
Sbjct: 216 QLGTDADK-EQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVA------DLAESIMKNLRR 268
Query: 229 VFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFD 264
V P+S + + LYG ED + V C+ QN D
Sbjct: 269 VHPISTMI--KGLYGIKEDVFLS-VPCILGQNGISD 301
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 180 ESWMDAHQNQIESLNKSNNMKSY--WELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVL 237
E W + H+ +ES + +K Y W + + D + +N RV PVS +
Sbjct: 224 EQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVA------DLAESIMKNLRRVHPVSTMI- 276
Query: 238 QRQLYGQLEDRWNKLVSCVTEQNPSFD 264
+ LYG +D + V C+ QN D
Sbjct: 277 -KGLYGIKDDVFLS-VPCILGQNGISD 301
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 180 ESWMDAHQNQIESLNKSNNMKSY--WELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVL 237
E W + H+ +ES + +K Y W + + D + +N RV PVS +
Sbjct: 224 EQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVA------DLAESIMKNLRRVHPVSTMI- 276
Query: 238 QRQLYGQLEDRWNKLVSCVTEQNPSFD 264
+ LYG +D + V C+ QN D
Sbjct: 277 -KGLYGIKDDVFLS-VPCILGQNGISD 301
>pdb|2G2D|A Chain A, Crystal Structure Of A Putative Pduo-Type Atp:cobalamin
Adenosyltransferase From Mycobacterium Tuberculosis
Length = 193
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 173 QTLADRLESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPV 232
Q+ DRLE W DA+ + +L KS + L A + T++ R+ + A+ P
Sbjct: 94 QSYIDRLEGWCDAYNAGLPAL-KSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPE 152
Query: 233 SDEVLQRQLYGQLED 247
VL + +L D
Sbjct: 153 GVSVLPAKYLNRLSD 167
>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
pdb|1EI1|B Chain B, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
Length = 391
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 162 LSTFTEYW-LEYQTLADRLE--SWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDR 218
L TFT EY+ LA RL S++D+ + I +K + + ++ + I+ + L++
Sbjct: 172 LETFTNVTEFEYEILAKRLRELSFLDSGVS-IRLRDKRDGKEDHFHYEGGIKAFVEYLNK 230
Query: 219 SRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQF 272
++ + F + + ++ Q D + + + C T P DG F
Sbjct: 231 NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 284
>pdb|3BWG|A Chain A, The Crystal Structure Of Possible Transcriptional
Regulator Yydk From Bacillus Subtilis Subsp. Subtilis
Str. 168
pdb|3BWG|B Chain B, The Crystal Structure Of Possible Transcriptional
Regulator Yydk From Bacillus Subtilis Subsp. Subtilis
Str. 168
pdb|3BWG|C Chain C, The Crystal Structure Of Possible Transcriptional
Regulator Yydk From Bacillus Subtilis Subsp. Subtilis
Str. 168
Length = 239
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 170 LEYQTLADRLESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRV 229
L+YQ +A +E++++ HQ L + + + L AQ E + + +S + E +
Sbjct: 5 LKYQQIATEIETYIEEHQ-----LQQGDKLPVLETLXAQFEVSKSTITKSLELLEQKGAI 59
Query: 230 FPV 232
F V
Sbjct: 60 FQV 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,886,504
Number of Sequences: 62578
Number of extensions: 290035
Number of successful extensions: 815
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 18
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)