BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11911
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=4
Length = 8797
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E+L + K ++ H +L QA +L +A R ++
Sbjct: 6627 LDKHKEYFQGLESHMILTETLFRKIISFAVQKETQFHTELMAQASAVLKRAHKRGVELEY 6686
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W LD++ E + L +V+ +P++ + ++ + + +L++ L + + +
Sbjct: 6687 ILETWSHLDEDQQELSRQLEVVESSIPSVGLVEENEDRLIDRITLYQHLKSSLNEYQPKL 6746
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q++ + + I C LE L+ +S L +L T ++W YQ+ +
Sbjct: 6747 YQVLDDGKRLLISISCSDLESQLNQLGECWLSNTNKMSKELHRLETILKHWTRYQSESAD 6806
Query: 179 LESWMDAHQNQIE 191
L W+ + ++++E
Sbjct: 6807 LIHWLQSAKDRLE 6819
>sp|Q6ZWR6|SYNE1_MOUSE Nesprin-1 OS=Mus musculus GN=Syne1 PE=1 SV=2
Length = 8799
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 82/192 (42%), Gaps = 2/192 (1%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E L + K ++ H QA +L +A R ++
Sbjct: 6630 LGKHKEYFQGLESHMILTEILFRKIVGFAAVKETQFHTDCMAQASAVLKQAHKRGVELEY 6689
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W LD+N E + L +++ +P++ + S+ + E +L++ L + + +
Sbjct: 6690 ILEMWSHLDENRQELSRQLEVIENSIPSVGLVEESEDRLVERTNLYQHLKSSLNEYQPKL 6749
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q + + + + C LE L+ +S L +L T ++W YQ+ A
Sbjct: 6750 YQALDDGKRLLMSVSCSELESQLNQLGEHWLSNTNKVSKELHRLETILKHWTRYQSEAAA 6809
Query: 179 LESWMDAHQNQI 190
L W+ ++++
Sbjct: 6810 LNHWLQCAKDRL 6821
>sp|Q6ZWQ0|SYNE2_MOUSE Nesprin-2 OS=Mus musculus GN=Syne2 PE=1 SV=2
Length = 6874
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 114/270 (42%), Gaps = 19/270 (7%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+Q ++ FF L L+++ + + P + K + + + ++A +R Q+
Sbjct: 4762 LQDHKAFFQKLVADMLLIQTYSATMFPPSLQKGEGFGAEQVAEVRALEEEACLRGAQLQS 4821
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
KW D N L + +P++S + ++ + E S ++ + ++ R
Sbjct: 4822 MLQKWEEFDDNYASLEKDLEALISSLPSVSLVEETEERLLERISFYQQIKRNIDGKHARL 4881
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEI--LNLERSISSGLIKLSTFTEYWLEYQTLA 176
Q ++ R + + CP EP + R E L+L + I L +L T ++ L Y +
Sbjct: 4882 CQTLNEGRQLAASVSCP--EPEGQIARLEEQWLSLNKRIDQELHRLQTLLKHLLSYSRDS 4939
Query: 177 DRLESWMDAHQNQI-----ESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFE 224
D L W++ Q + +SLN S +N+ +++ +++ ++ L + +
Sbjct: 4940 DELTRWLETSQQTLNYWKEQSLNVSQDLNTIRSNIDRFFKFSKEVDERSS-LKSAVMSTG 4998
Query: 225 NAMRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
N + +D R Q E +W L++
Sbjct: 4999 NQLLHLKEADTATLRASLAQFEQKWTVLIT 5028
>sp|Q8WXH0|SYNE2_HUMAN Nesprin-2 OS=Homo sapiens GN=SYNE2 PE=1 SV=3
Length = 6885
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 64 KWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRTTQL 121
KW D+N L I+ +P++S + ++ + E S ++ + ++ R Q
Sbjct: 4839 KWEEFDENYASLEKDLEILISTLPSVSLVEETEERLVERISFYQQIKRNIGGKHARLYQT 4898
Query: 122 VSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLES 181
++ + + + CP LE + L+L + I L +L ++ L Y +D+L
Sbjct: 4899 LNEGKQLVASVSCPELEGQIAKLEEQWLSLNKKIDHELHRLQALLKHLLSYNRDSDQLTK 4958
Query: 182 WMDAHQNQI-----ESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFENAMRV 229
W+++ Q+ + +SLN S +N+ +++E +++ ++ L + + N +
Sbjct: 4959 WLESSQHTLNYWKEQSLNVSQDLDTIRSNINNFFEFSKEVDEKSS-LKTAVISIGNQLLH 5017
Query: 230 FPVSDEVLQRQLYGQLEDRWNKLVS 254
+D R Q E +W L++
Sbjct: 5018 LKETDTATLRASLAQFEQKWTMLIT 5042
>sp|Q9XT87|LDHA_MONDO L-lactate dehydrogenase A chain OS=Monodelphis domestica GN=LDHA
PE=2 SV=3
Length = 332
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 180 ESWMDAHQNQIESLNKSNNMKSY--WELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVL 237
E W D H+ +ES + +K Y W + + D + +N RV P+S +
Sbjct: 225 EQWKDVHKQVVESAYEVIKLKGYTSWAIGLSVA------DLAESIMKNLRRVHPISTMI- 277
Query: 238 QRQLYGQLEDRWNKLVSCVTEQNPSFD 264
+ LYG ED + V C+ QN D
Sbjct: 278 -KGLYGINEDVFLS-VPCILGQNGISD 302
>sp|P04642|LDHA_RAT L-lactate dehydrogenase A chain OS=Rattus norvegicus GN=Ldha PE=1
SV=1
Length = 332
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 171 EYQTLADRLESWMDAHQNQIESLNKSNNMKSY--WELKAQIEFYNTLLDRSRDNFENAMR 228
+ T AD+ E W D H+ ++S + +K Y W + + D + +N R
Sbjct: 217 QLGTDADK-EQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVA------DLAESIMKNLRR 269
Query: 229 VFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFD 264
V P+S + + LYG ED + V C+ QN D
Sbjct: 270 VHPISTMI--KGLYGIKEDVFLS-VPCILGQNGISD 302
>sp|Q9W7M6|LDHA_AMBME L-lactate dehydrogenase A chain OS=Ambystoma mexicanum GN=LDHA PE=2
SV=1
Length = 333
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 171 EYQTLADRLESWMDAHQNQIESLNKSNNMKSY--WELKAQIEFYNTLLDRSRDNFENAMR 228
E T AD+ E+W + H+ +ES + +K Y W + + D + +N R
Sbjct: 218 ELGTDADK-ENWKEVHKQVVESAYEVIKLKGYTSWAIGLSVA------DLAETIMKNLRR 270
Query: 229 VFPVSDEVLQRQLYGQLEDRWNKLVSCV 256
V PVS +V + LYG ED + V CV
Sbjct: 271 VHPVSTKV--KGLYGVHEDVFLS-VPCV 295
>sp|A6SDA8|CD123_BOTFB Cell division cycle protein 123 OS=Botryotinia fuckeliana (strain
B05.10) GN=cdc123 PE=3 SV=1
Length = 406
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 22 ESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHE 74
++ P KFSE+HKQ+ + ++ + A + WISL QN E
Sbjct: 94 DTDTGPDPSEKFSEIHKQIQETIAELDGSVVPKLNWSAPKDATWISLKQNSME 146
>sp|A7EUE6|CD123_SCLS1 Cell division cycle protein 123 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=CDC123 PE=3 SV=1
Length = 407
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 19 ESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHE 74
E ++ DP+ KFSE+HKQ+ + ++ + A + WISL QN E
Sbjct: 93 EDTDTESDPS--EKFSEIHKQIQETITELGGSVVPKLNWSAPKDATWISLKQNSME 146
>sp|Q6IUF7|GLYC_MACHU Pre-glycoprotein polyprotein GP complex OS=Machupo virus GN=GPC
PE=1 SV=1
Length = 496
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 107 LDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFT 166
L E + + LV + L++V + I NL + F +L RS S G K+ T
Sbjct: 15 LQEALNIALVAVS-LIAVIKGIINL-----YKSGLFQFIFFLLLAGRSCSDGTFKIGLHT 68
Query: 167 EYWLEYQTLADRLESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRD 221
E+ Q++ ++ + H N++ SL NN S++ +K + NT L R D
Sbjct: 69 EF----QSVTLTMQRLLANHSNELPSLCMLNN--SFYYMKGGV---NTFLIRVSD 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,639,291
Number of Sequences: 539616
Number of extensions: 3629406
Number of successful extensions: 11576
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 11501
Number of HSP's gapped (non-prelim): 145
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)