Query psy11911
Match_columns 279
No_of_seqs 46 out of 48
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:05:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00176 SPEC Spectrin repeats, 99.4 2.2E-11 4.8E-16 100.7 19.1 201 64-265 1-211 (213)
2 cd00176 SPEC Spectrin repeats, 98.3 0.00011 2.3E-09 60.8 16.6 160 2-163 40-210 (213)
3 PF00435 Spectrin: Spectrin re 97.9 0.00011 2.5E-09 54.5 9.6 94 167-261 1-101 (105)
4 PF00435 Spectrin: Spectrin re 97.7 0.00034 7.3E-09 52.0 9.1 100 64-163 2-104 (105)
5 smart00150 SPEC Spectrin repea 97.3 0.0019 4.2E-08 47.8 8.8 91 171-262 2-99 (101)
6 smart00150 SPEC Spectrin repea 97.1 0.0039 8.4E-08 46.2 8.1 96 67-162 2-100 (101)
7 KOG0517|consensus 96.7 0.35 7.6E-06 56.0 22.2 163 25-192 596-761 (2473)
8 KOG4286|consensus 96.6 0.66 1.4E-05 49.9 22.6 236 14-263 57-331 (966)
9 KOG0517|consensus 95.8 2.4 5.1E-05 49.7 22.9 206 63-277 1057-1280(2473)
10 PF08580 KAR9: Yeast cortical 84.2 14 0.00031 39.3 12.1 152 97-253 198-358 (683)
11 cd07604 BAR_ASAPs The Bin/Amph 72.9 77 0.0017 29.1 13.7 145 105-262 5-178 (215)
12 PF13514 AAA_27: AAA domain 64.3 2.4E+02 0.0052 31.4 23.0 112 101-217 742-861 (1111)
13 PF06008 Laminin_I: Laminin Do 57.6 1.6E+02 0.0034 27.1 18.7 171 39-226 63-246 (264)
14 COG1196 Smc Chromosome segrega 53.6 3.7E+02 0.008 30.2 19.3 166 9-191 186-357 (1163)
15 PF03993 DUF349: Domain of Unk 42.5 48 0.001 24.3 4.2 54 97-150 15-68 (77)
16 PRK04863 mukB cell division pr 40.1 7E+02 0.015 29.5 20.6 93 99-192 401-507 (1486)
17 COG3184 Uncharacterized protei 39.4 2.1E+02 0.0046 26.2 8.4 85 44-161 75-164 (183)
18 PF00621 RhoGEF: RhoGEF domain 38.7 2.1E+02 0.0045 23.1 8.3 66 47-112 83-155 (180)
19 smart00503 SynN Syntaxin N-ter 37.7 1.4E+02 0.0031 23.1 6.4 68 99-166 5-73 (117)
20 PF09325 Vps5: Vps5 C terminal 36.5 2.9E+02 0.0063 24.1 10.0 86 39-124 42-140 (236)
21 cd00522 Hemerythrin Hemerythri 36.0 1.6E+02 0.0036 23.5 6.6 60 3-65 18-97 (113)
22 KOG4715|consensus 35.6 2E+02 0.0043 28.9 8.1 109 65-192 192-301 (410)
23 TIGR03185 DNA_S_dndD DNA sulfu 35.1 5.5E+02 0.012 26.9 18.8 42 50-91 217-258 (650)
24 cd07597 BAR_SNX8 The Bin/Amphi 32.4 4E+02 0.0087 24.5 12.2 98 64-161 85-195 (246)
25 PF10168 Nup88: Nuclear pore c 31.9 6.9E+02 0.015 27.1 17.1 145 19-168 561-714 (717)
26 PF07462 MSP1_C: Merozoite sur 30.5 7E+02 0.015 26.7 13.0 144 94-241 13-183 (574)
27 COG1842 PspA Phage shock prote 30.0 4.5E+02 0.0098 24.4 11.7 149 3-164 53-218 (225)
28 PRK04863 mukB cell division pr 29.1 1E+03 0.022 28.2 19.0 211 25-258 887-1127(1486)
29 PF08429 PLU-1: PLU-1-like pro 26.2 2.3E+02 0.005 26.6 6.8 86 116-204 86-190 (335)
30 PF14257 DUF4349: Domain of un 24.6 1.5E+02 0.0032 27.1 5.1 55 78-132 106-165 (262)
31 PF00709 Adenylsucc_synt: Aden 24.5 90 0.002 31.6 3.9 83 46-129 134-217 (421)
32 TIGR00996 Mtu_fam_mce virulenc 24.4 5.5E+02 0.012 23.5 11.7 84 95-180 188-282 (291)
33 PF00804 Syntaxin: Syntaxin; 24.4 3E+02 0.0066 20.4 6.5 69 99-167 4-73 (103)
34 PF06160 EzrA: Septation ring 23.7 8.3E+02 0.018 25.3 19.8 126 44-169 149-308 (560)
35 PHA02562 46 endonuclease subun 23.5 7.4E+02 0.016 24.7 20.1 33 53-85 178-210 (562)
36 PF08317 Spc7: Spc7 kinetochor 23.1 6.7E+02 0.014 24.0 17.0 25 65-89 158-182 (325)
37 PF05075 DUF684: Protein of un 22.7 6.3E+02 0.014 24.5 9.2 81 139-228 2-97 (345)
38 PF11594 Med28: Mediator compl 22.2 4.5E+02 0.0098 22.1 7.0 52 67-126 39-90 (106)
39 PF14915 CCDC144C: CCDC144C pr 21.7 7.9E+02 0.017 24.3 11.8 169 104-275 86-270 (305)
40 PF14131 DUF4298: Domain of un 21.5 3.3E+02 0.0073 21.5 5.9 50 42-91 3-62 (90)
41 KOG3390|consensus 21.2 3.9E+02 0.0084 22.8 6.4 53 120-192 55-107 (120)
42 PHA03247 large tegument protei 20.9 1.6E+03 0.034 29.0 13.1 132 77-248 1671-1840(3151)
43 KOG3520|consensus 20.6 5.9E+02 0.013 29.5 9.4 81 73-156 508-598 (1167)
No 1
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.44 E-value=2.2e-11 Score=100.70 Aligned_cols=201 Identities=15% Similarity=0.191 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCccc-chhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcc--cCCCchHH
Q psy11911 64 KWISLDQNLHEEAAWLNIVQQRVPNLSAM-TCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLI--DCPHLEPA 140 (279)
Q Consensus 64 ~W~~Ld~~~~~~~~wLe~~e~~iP~v~lV-teerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V--~cp~LE~q 140 (279)
.|..|..+++++..||...+..+=+...+ +.+...+.+.-++.+..++..|.+.+-.+...|+.|.... .++.+...
T Consensus 1 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~ 80 (213)
T cd00176 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQER 80 (213)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 48899999999999999999888776666 4667889999999999999999999999999999999987 57789999
Q ss_pred hhHHHHHHHhhhHHHhhHhHhHHHHHHHHHHHHhhHhHHHHHHHHHHhhhccccC---c----cchhHHHHHHHHhhhhh
Q psy11911 141 TESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNK---S----NNMKSYWELKAQIEFYN 213 (279)
Q Consensus 141 ~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~~Y~~~s~~L~~WL~sA~~~L~~l~v---p----d~l~~F~Efskeve~ks 213 (279)
+..+...|-.+...+.....+|+.....|..|+.... +..||..+...|....+ | ..+..+=.|..++..+.
T Consensus 81 ~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (213)
T cd00176 81 LEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHE 159 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhch
Confidence 9999999999999999999999999999999998776 99999999999986333 2 78888889999999888
Q ss_pred hhhhhhhhHHHhhhcccCcchHHHHHHHHHhHHHHHHHHHhhhhhhccCCcc
Q psy11911 214 TLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDG 265 (279)
Q Consensus 214 slk~s~~~~~~qaL~~~~i~De~~~R~~l~q~e~~W~~l~~~ip~iQe~~~~ 265 (279)
+.-.++...+.+.+...+-.+....+..+..|..+|..|.+.++..+..+..
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~ 211 (213)
T cd00176 160 PRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEE 211 (213)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777776667766676665555889999999999999999999988776543
No 2
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=98.26 E-value=0.00011 Score=60.83 Aligned_cols=160 Identities=15% Similarity=0.106 Sum_probs=119.3
Q ss_pred hhhhHhhhcchhHHHHHHHHh-------hcCChhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q psy11911 2 QKYRTFFMNLSHCRSLLESLE-------SHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHE 74 (279)
Q Consensus 2 qKhk~FF~~L~h~~~iLEsl~-------~kld~~t~~k~~~~h~eL~~~A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~ 74 (279)
.+|+.|-..+.....-++.+. .... .....-..--..+..+=..+...+..|...|+.++..|..+++-+.
T Consensus 40 ~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~-~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~- 117 (213)
T cd00176 40 KKHEALEAELAAHEERVEALNELGEQLIEEGH-PDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD- 117 (213)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 456666555544443333332 2221 1223334445567777788899999999999999999999987666
Q ss_pred HHHHHHHHHhcCCCCcccc-hhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCC---chHHhhHHHHHHHh
Q psy11911 75 EAAWLNIVQQRVPNLSAMT-CSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPH---LEPATESHRFEILN 150 (279)
Q Consensus 75 ~~~wLe~~e~~iP~v~lVt-eerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~---LE~q~~~l~e~wl~ 150 (279)
+..|+...+..+.....+. .+.+.+.+.-++.+++.+..|++.+..+.+.|..|.....-+. ++..+..+..+|-.
T Consensus 118 l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 197 (213)
T cd00176 118 LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEE 197 (213)
T ss_pred HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999877766554 7788899999999999999999999999999999999877654 56777777777777
Q ss_pred hhHHHhhHhHhHH
Q psy11911 151 LERSISSGLIKLS 163 (279)
Q Consensus 151 l~~kV~~eL~RL~ 163 (279)
+...+..--.+|+
T Consensus 198 l~~~~~~~~~~L~ 210 (213)
T cd00176 198 LLELAEERQKKLE 210 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 7666665555554
No 3
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=97.94 E-value=0.00011 Score=54.52 Aligned_cols=94 Identities=21% Similarity=0.349 Sum_probs=78.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHhhhccccCc-------cchhHHHHHHHHhhhhhhhhhhhhhHHHhhhcccCcchHHHHH
Q psy11911 167 EYWLEYQTLADRLESWMDAHQNQIESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQR 239 (279)
Q Consensus 167 khW~~Y~~~s~~L~~WL~sA~~~L~~l~vp-------d~l~~F~Efskeve~ksslk~s~~~~~~qaL~~~~i~De~~~R 239 (279)
+.|..|...++++..||..++..|....+| .-+..+=+|.+++..+..-.+.....+..+...-| .|....+
T Consensus 1 ~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~-~~~~~i~ 79 (105)
T PF00435_consen 1 KQLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGP-EDSDEIQ 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-TTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHH
Confidence 578999999999999999999999765445 77888999999999888777777777776656445 5999999
Q ss_pred HHHHhHHHHHHHHHhhhhhhcc
Q psy11911 240 QLYGQLEDRWNKLVSCVTEQNP 261 (279)
Q Consensus 240 ~~l~q~e~~W~~l~~~ip~iQe 261 (279)
..+..|.++|..|...+..-..
T Consensus 80 ~~~~~l~~~w~~l~~~~~~r~~ 101 (105)
T PF00435_consen 80 EKLEELNQRWEALCELVEERRQ 101 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876443
No 4
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=97.72 E-value=0.00034 Score=51.98 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCccc-chhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcc--cCCCchHH
Q psy11911 64 KWISLDQNLHEEAAWLNIVQQRVPNLSAM-TCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLI--DCPHLEPA 140 (279)
Q Consensus 64 ~W~~Ld~~~~~~~~wLe~~e~~iP~v~lV-teerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V--~cp~LE~q 140 (279)
.|..|..++.++..||..++..+=+.+.. +.+.+...+.-++.+..+|..+.+++-.+.+.|..|...- .-|.+...
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 58899999999999999999998333333 4777889999999999999999999999999999995553 45677888
Q ss_pred hhHHHHHHHhhhHHHhhHhHhHH
Q psy11911 141 TESHRFEILNLERSISSGLIKLS 163 (279)
Q Consensus 141 ~~~l~e~wl~l~~kV~~eL~RL~ 163 (279)
+..+..+|-.+.+.+...-.+|+
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 88888899888888887776664
No 5
>smart00150 SPEC Spectrin repeats.
Probab=97.34 E-value=0.0019 Score=47.82 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=72.8
Q ss_pred HHHhhHhHHHHHHHHHHhhhccccCc-------cchhHHHHHHHHhhhhhhhhhhhhhHHHhhhcccCcchHHHHHHHHH
Q psy11911 171 EYQTLADRLESWMDAHQNQIESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYG 243 (279)
Q Consensus 171 ~Y~~~s~~L~~WL~sA~~~L~~l~vp-------d~l~~F~Efskeve~ksslk~s~~~~~~qaL~~~~i~De~~~R~~l~ 243 (279)
.|...+.++..||..++..|.+-.+| ..++.|=.|.++++.+.+--..+...+.+.+.--| .|....+..+.
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~-~~~~~i~~~~~ 80 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGH-PDAEEIEERLE 80 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHH
Confidence 58899999999999999999876665 67788889999999887666666556665556334 47788999999
Q ss_pred hHHHHHHHHHhhhhhhccC
Q psy11911 244 QLEDRWNKLVSCVTEQNPS 262 (279)
Q Consensus 244 q~e~~W~~l~~~ip~iQe~ 262 (279)
.|..+|..|...+..-+..
T Consensus 81 ~l~~~w~~l~~~~~~r~~~ 99 (101)
T smart00150 81 ELNERWEELKELAEERRQK 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999888765543
No 6
>smart00150 SPEC Spectrin repeats.
Probab=97.09 E-value=0.0039 Score=46.22 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcc-cchhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhc--ccCCCchHHhhH
Q psy11911 67 SLDQNLHEEAAWLNIVQQRVPNLSA-MTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNL--IDCPHLEPATES 143 (279)
Q Consensus 67 ~Ld~~~~~~~~wLe~~e~~iP~v~l-Vteerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~--V~cp~LE~q~~~ 143 (279)
.|..++.++..||...+..+-+... .+.+.+...+.-++.+..+|..|++++-.+...|+.|... -..+.+...+..
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~ 81 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEE 81 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 4788899999999998865533222 2577788899999999999999999999999999999987 233345566666
Q ss_pred HHHHHHhhhHHHhhHhHhH
Q psy11911 144 HRFEILNLERSISSGLIKL 162 (279)
Q Consensus 144 l~e~wl~l~~kV~~eL~RL 162 (279)
+..+|=.+...+...-.+|
T Consensus 82 l~~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 82 LNERWEELKELAEERRQKL 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666666665544443
No 7
>KOG0517|consensus
Probab=96.69 E-value=0.35 Score=55.97 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=130.9
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccc-hhhHHHHHHH
Q psy11911 25 LDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMT-CSDYKQYESL 103 (279)
Q Consensus 25 ld~~t~~k~~~~h~eL~~~A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe~~e~~iP~v~lVt-eerl~erIsl 103 (279)
-||.+.+....-.+. .=..+.+.|+.|-..||...+-|. |-.+|.++..|+-.=++.+-+..+-- =.-...-...
T Consensus 596 cdp~vi~~R~~~le~---~y~eL~~laa~RRarLE~sr~l~~-F~~d~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~k 671 (2473)
T KOG0517|consen 596 CDPQVIQERVAHLEQ---CYQELVELAAARRARLEESRRLWQ-FLWDVEEEEAWLKEKEQILSSADTGRDLSSVLRLLQK 671 (2473)
T ss_pred CCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHH
Confidence 356665555443333 335678889999999999999995 66899999999998887766544331 1123356788
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhhhhhc--ccCCCchHHhhHHHHHHHhhhHHHhhHhHhHHHHHHHHHHHHhhHhHHHH
Q psy11911 104 FKALDEDMKVHLVRTTQLVSVCRSITNL--IDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLES 181 (279)
Q Consensus 104 YQ~l~~~l~~hq~kL~Q~l~~gk~L~~~--V~cp~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~~Y~~~s~~L~~ 181 (279)
|..+...|.+|.+++-|++..|+.|..- ...|++...+..+.++|=.|..-|..-=.||+... +.-+|..++|++..
T Consensus 672 HKalE~E~~~~~a~~~~~~~~G~~Lvae~~pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~-~~~QffaDAdd~~s 750 (2473)
T KOG0517|consen 672 HKALEDEMRGRDAHLKQMIREGEELVAEGHPGSDQIQERAAEIREQWQRLEALVAGRGRRLQEAR-ELYQFFADADDAES 750 (2473)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHH
Confidence 9999999999999999999999999864 67788999999999999999999998888888765 56789999999999
Q ss_pred HHHHHHhhhcc
Q psy11911 182 WMDAHQNQIES 192 (279)
Q Consensus 182 WL~sA~~~L~~ 192 (279)
||..+..=+++
T Consensus 751 Wl~d~~rlvss 761 (2473)
T KOG0517|consen 751 WLRDALRLVSS 761 (2473)
T ss_pred HHHHHHHhccc
Confidence 99988766665
No 8
>KOG4286|consensus
Probab=96.63 E-value=0.66 Score=49.88 Aligned_cols=236 Identities=14% Similarity=0.193 Sum_probs=163.3
Q ss_pred HHHHHHHHhhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHhcCCCC
Q psy11911 14 CRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLN----IVQQRVPNL 89 (279)
Q Consensus 14 ~~~iLEsl~~kld~~t~~k~~~~h~eL~~~A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe----~~e~~iP~v 89 (279)
..+|++++++-=++-.++. +..+=.++-++.+.-|..||.+...|..|-.+++++-.||+ .+....|..
T Consensus 57 ~~kl~~~l~~~~~~~~l~~-------mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~g 129 (966)
T KOG4286|consen 57 SQKILRSLEGSDDAVLLQL-------MNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIG 129 (966)
T ss_pred HHHHHHHhcCCccchHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCC
Confidence 4678899998777777663 33445566777888899999999999999999999999996 477789999
Q ss_pred cccchhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCC----------------------chHHhhHHHHH
Q psy11911 90 SAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPH----------------------LEPATESHRFE 147 (279)
Q Consensus 90 ~lVteerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~----------------------LE~q~~~l~e~ 147 (279)
|-|. .+++--+.-..+++-|..+-+..+-+++.|+..+.--.-.. +++|-..+-+.
T Consensus 130 gd~~--avq~q~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~ 207 (966)
T KOG4286|consen 130 GDFP--AVQKQNDVHRAFKRELKTKEPVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTE 207 (966)
T ss_pred CChH--HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9885 23444566778899999999999999999988765443333 34455566677
Q ss_pred HHhhhHHHhhHhHhHHHHHHHHHHHHhhHhHHHHHHHHHHhhhcccc---------CccchhHHHHHHHHhh-hhhhhhh
Q psy11911 148 ILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLN---------KSNNMKSYWELKAQIE-FYNTLLD 217 (279)
Q Consensus 148 wl~l~~kV~~eL~RL~~~lkhW~~Y~~~s~~L~~WL~sA~~~L~~l~---------vpd~l~~F~Efskeve-~ksslk~ 217 (279)
|-+|+-.+..-=+..+..++....-+...++|.-=|.+|+.--+.-. .|+|+..---|++|++ .+-.++
T Consensus 208 we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~- 286 (966)
T KOG4286|consen 208 WEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVS- 286 (966)
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchh-
Confidence 77776554443344444444455567788888888888887776411 1288888888899887 333333
Q ss_pred hhhhHHHh---hhcccCcchHHHHHHHHHhHHHHHHHHHhhhhhhccCC
Q psy11911 218 RSRDNFEN---AMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSF 263 (279)
Q Consensus 218 s~~~~~~q---aL~~~~i~De~~~R~~l~q~e~~W~~l~~~ip~iQe~~ 263 (279)
..|.+-. ++. ++. |.-..+ -+.++-.+|..|-..+|.-+..+
T Consensus 287 -~vndla~ql~~~d-~~l-s~~~~~-~le~~n~rwk~Lq~SV~~rl~ql 331 (966)
T KOG4286|consen 287 -HVNDLARQLTTLD-IQL-SPYNLS-TLEDLNTRWKLLQVSVPDRLTQL 331 (966)
T ss_pred -hHHHHHHHhhhcc-cCC-ChhhHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 222 222 333333 45677889999988888765443
No 9
>KOG0517|consensus
Probab=95.82 E-value=2.4 Score=49.66 Aligned_cols=206 Identities=12% Similarity=0.124 Sum_probs=155.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCC-CcccchhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCC---ch
Q psy11911 63 SKWISLDQNLHEEAAWLNIVQQRVPN-LSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPH---LE 138 (279)
Q Consensus 63 s~W~~Ld~~~~~~~~wLe~~e~~iP~-v~lVteerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~---LE 138 (279)
..=-.|-.+.+.+..||+.++..|-+ .+-|+-..-.+-..--+.|+..|+.|+....++..-|+.+...-+||. |.
T Consensus 1057 ~~lQ~Fl~dld~f~~Wl~~tq~~~~see~p~~l~eAe~LL~qH~~l~eEI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~ 1136 (2473)
T KOG0517|consen 1057 GGLQRFLRDLDDFQAWLESTQTQVASEEGPVDLAEAEQLLKQHAALREEIDGYQEDYQRMRALGETVADGQTDPQYLFLR 1136 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHhHHH
Confidence 44567889999999999999887754 233333333344556688999999999999999999998888788885 56
Q ss_pred HHhhHHHHHHHhhhHHHhhHhHhHHHHHHHHH-------HHHhhHhHHHHHHHHHHhhhccccCc-------cchhHHHH
Q psy11911 139 PATESHRFEILNLERSISSGLIKLSTFTEYWL-------EYQTLADRLESWMDAHQNQIESLNKS-------NNMKSYWE 204 (279)
Q Consensus 139 ~q~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~-------~Y~~~s~~L~~WL~sA~~~L~~l~vp-------d~l~~F~E 204 (279)
..+.-|+..| .+|||+=.=..+|. .|+++++..+.=+.+-+--|++-+.| +-|..+-.
T Consensus 1137 erL~~L~~gw--------~eL~~mWe~Rq~~L~Q~l~lQ~F~Rda~q~ea~l~~qE~~L~~d~lp~sle~ae~~LKrh~D 1208 (2473)
T KOG0517|consen 1137 ERLQALGTGW--------EELHRMWENRQKWLSQGLDLQLFLRDARQAEATLSNQEAFLSHDNLPDSLEEAEALLKRHRD 1208 (2473)
T ss_pred HHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccHHHHHHHHHHHHH
Confidence 6666666666 45666655555554 68899999999999999999888888 44555666
Q ss_pred HHHHhhhhhhhhhhhhhHHHhhhcccCcchHHHHHHHHHhHHHHHHHHHhhhhhhccCCccccccchhhhccc
Q psy11911 205 LKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYELD 277 (279)
Q Consensus 205 fskeve~ksslk~s~~~~~~qaL~~~~i~De~~~R~~l~q~e~~W~~l~~~ip~iQe~~~~~~~~~~~~~~~~ 277 (279)
|-+-.|+.-.--......+++++. ---.|-...|.....|+.+|..+-.+-.+.-..+..+.+|-.|--+.|
T Consensus 1209 F~~tm~a~~~ki~a~~~~gd~Lv~-~~h~~s~~I~ek~~~I~~r~~~nr~rA~q~~~~L~~slelQ~flqd~~ 1280 (2473)
T KOG0517|consen 1209 FLTTMDANDEKIEALVDTGDKLVS-EGHIDSDKIREKAQSILARRKANRERAQQRLRKLKDSLELQEFLQDCD 1280 (2473)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666554434456666676666 333588888999999999999999888888888888888888765544
No 10
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=84.16 E-value=14 Score=39.27 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=105.3
Q ss_pred HHHHHHHHH---HHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchHHhhHHHHHHHhhhHHHhhHhHhHHHHHHHHHH-H
Q psy11911 97 YKQYESLFK---ALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLE-Y 172 (279)
Q Consensus 97 l~erIslYQ---~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~~-Y 172 (279)
|.+|..|+- =|+.+| +-.|-=..+...=..=..-..|.+|+..+..|.+.|=.|...+..- |=+.+-+-|+- |
T Consensus 198 ~~~ll~L~arm~PLraSL-dfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~L--K~ELiedRW~~vF 274 (683)
T PF08580_consen 198 YSSLLALFARMQPLRASL-DFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESL--KKELIEDRWNIVF 274 (683)
T ss_pred HHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHH
Confidence 445665553 356666 5555333333222233344578999999999999999999887643 55778888975 6
Q ss_pred HhhHhHHHHHHHHHHhhhccccCc----cchhHHHHHHHHhhhhhhhhhhhhhHHHhhhcccCcchHHHHHHHHH-hHHH
Q psy11911 173 QTLADRLESWMDAHQNQIESLNKS----NNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYG-QLED 247 (279)
Q Consensus 173 ~~~s~~L~~WL~sA~~~L~~l~vp----d~l~~F~Efskeve~ksslk~s~~~~~~qaL~~~~i~De~~~R~~l~-q~e~ 247 (279)
.....++..=+++.+.-+..+... -|...=--|.++++.+...++.+++-.-+|.- +.|.|.- ....+. .+..
T Consensus 275 r~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~-~sIi~~g-v~~r~n~~L~~ 352 (683)
T PF08580_consen 275 RNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARV-LSIIDKG-VADRLNADLAQ 352 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHH-HHhhhhh-HHHHhhHHHHH
Confidence 667777777777766666554443 34555567899999999999999999944443 5566666 556666 9999
Q ss_pred HHHHHH
Q psy11911 248 RWNKLV 253 (279)
Q Consensus 248 ~W~~l~ 253 (279)
+|.+|-
T Consensus 353 rW~~L~ 358 (683)
T PF08580_consen 353 RWLELK 358 (683)
T ss_pred HHHHHH
Confidence 999986
No 11
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=72.88 E-value=77 Score=29.06 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=87.6
Q ss_pred HHHHHhhhhhhHHHHHHHhhhhhhhhcccC-CCchHH----hhHHHHHHHhhhH-HHhhHhHhHHHHHHHHHHHHhhHhH
Q psy11911 105 KALDEDMKVHLVRTTQLVSVCRSITNLIDC-PHLEPA----TESHRFEILNLER-SISSGLIKLSTFTEYWLEYQTLADR 178 (279)
Q Consensus 105 Q~l~~~l~~hq~kL~Q~l~~gk~L~~~V~c-p~LE~q----~~~l~e~wl~l~~-kV~~eL~RL~~~lkhW~~Y~~~s~~ 178 (279)
++|..+++.|..+|--+...+|.+..+-.. ..=+.+ +.+++-.++.-.+ .|..-|.++..+++....|-
T Consensus 5 ~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~----- 79 (215)
T cd07604 5 GALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALF----- 79 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 467777888888888888777777654211 111222 2223333332221 46666666665555544443
Q ss_pred HHHHHHHHHhhhc-cccCc------cchhHHH-HHHHHhhhhhhhhhhhhhHHHhhhcccCc-ch--------------H
Q psy11911 179 LESWMDAHQNQIE-SLNKS------NNMKSYW-ELKAQIEFYNTLLDRSRDNFENAMRVFPV-SD--------------E 235 (279)
Q Consensus 179 L~~WL~sA~~~L~-~l~vp------d~l~~F~-Efskeve~ksslk~s~~~~~~qaL~~~~i-~D--------------e 235 (279)
..=.+.++ .|+.| ++++.+- |.||.+|-.+.-++.+...++ +..|- +. +
T Consensus 80 -----~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~---k~Kk~~~~~~~~~r~e~~~~e~~ 151 (215)
T cd07604 80 -----KNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIE---KEKKQLAKEAGMIRTEITGAEIA 151 (215)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchhhhhhhhcchhhhhhhHH
Confidence 22233333 35556 7799997 999999988887787777777 33442 21 2
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhhccC
Q psy11911 236 VLQRQLYGQLEDRWNKLVSCVTEQNPS 262 (279)
Q Consensus 236 ~~~R~~l~q~e~~W~~l~~~ip~iQe~ 262 (279)
..+-.....|+..=-+...+|.+||.+
T Consensus 152 ~~l~~~R~~F~~~~~~yv~~l~~lq~k 178 (215)
T cd07604 152 EEMEKERRMFQLQMCEYLIKVNEIKTK 178 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445567777778889999999875
No 12
>PF13514 AAA_27: AAA domain
Probab=64.33 E-value=2.4e+02 Score=31.45 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchH----HhhHHHHHHHhhhHHHhhHhHhHHHHHHHHHHHHhhH
Q psy11911 101 ESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEP----ATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLA 176 (279)
Q Consensus 101 IslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~----q~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~~Y~~~s 176 (279)
..-+..+...+......+-..-.....|...+..+-.+. .+..+. .+++-...... +...+.......+..-
T Consensus 742 ~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~-~~l~~a~~~~~---~~~~l~~~~~~~~~~~ 817 (1111)
T PF13514_consen 742 LAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALR-ARLEEAREAQE---ERERLQEQLEELEEEL 817 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 334444444555555555555666667777666533332 222222 22222222222 2233333333444444
Q ss_pred hHHHHHHHHHHhhhccc----cCccchhHHHHHHHHhhhhhhhhh
Q psy11911 177 DRLESWMDAHQNQIESL----NKSNNMKSYWELKAQIEFYNTLLD 217 (279)
Q Consensus 177 ~~L~~WL~sA~~~L~~l----~vpd~l~~F~Efskeve~ksslk~ 217 (279)
..+..=+..+..+++.+ .+ ++...|-+.-...+.+..++.
T Consensus 818 ~~~~~~l~~~~~~l~~L~~~a~~-~~~e~l~~~~~~~~~~~~l~~ 861 (1111)
T PF13514_consen 818 EQAEEELEELEAELAELLEQAGV-EDEEELREAEERAEERRELRE 861 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555432 22 334455554444444444433
No 13
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=57.60 E-value=1.6e+02 Score=27.12 Aligned_cols=171 Identities=11% Similarity=0.127 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHhhhhhhHHH
Q psy11911 39 QLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRT 118 (279)
Q Consensus 39 eL~~~A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe~~e~~iP~v~lVteerl~erIslYQ~l~~~l~~hq~kL 118 (279)
.|..+|..+...|.......+.+..+=..|+...+.+..-.+.+...+..++.- .-..-.+.+
T Consensus 63 ~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~-----------------~~~~~~~~l 125 (264)
T PF06008_consen 63 NLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNEN-----------------GDQLPSEDL 125 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------------cCCCCHHHH
Confidence 455566666666666666666666667777777777777666666555555440 111112233
Q ss_pred HHHHhhhhhhhhcccCCCchHHhhHHHHHH----------HhhhHHHhhHhHhH-HHHHHHHHHHHhhHhHHHHHHHHHH
Q psy11911 119 TQLVSVCRSITNLIDCPHLEPATESHRFEI----------LNLERSISSGLIKL-STFTEYWLEYQTLADRLESWMDAHQ 187 (279)
Q Consensus 119 ~Q~l~~gk~L~~~V~cp~LE~q~~~l~e~w----------l~l~~kV~~eL~RL-~~~lkhW~~Y~~~s~~L~~WL~sA~ 187 (279)
...+.++++++.-+--=++-.+...+.+.| -+.=.+.-.+...| ..+.+....|+.--..|-.||..|.
T Consensus 126 ~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~ 205 (264)
T PF06008_consen 126 QRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQ 205 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444443332222222222222222 22222223344445 7788889999999999999999999
Q ss_pred hhhccccC--ccchhHHHHHHHHhhhhhhhhhhhhhHHHhh
Q psy11911 188 NQIESLNK--SNNMKSYWELKAQIEFYNTLLDRSRDNFENA 226 (279)
Q Consensus 188 ~~L~~l~v--pd~l~~F~Efskeve~ksslk~s~~~~~~qa 226 (279)
....--.- +.+=..+=++.+.++.=+.....+..++..|
T Consensus 206 ~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a 246 (264)
T PF06008_consen 206 NKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEA 246 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88763111 1222333355555555555555555555543
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=53.59 E-value=3.7e+02 Score=30.25 Aligned_cols=166 Identities=20% Similarity=0.193 Sum_probs=89.1
Q ss_pred hcchhHHHHHHHHhhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Q psy11911 9 MNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPN 88 (279)
Q Consensus 9 ~~L~h~~~iLEsl~~kld~~t~~k~~~~h~eL~~~A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe~~e~~iP~ 88 (279)
.||+.+-.+++-+.+.++|..+++....- -.-.++..+-.+..+++-.|..+...+......+..++..+-+
T Consensus 186 ~nl~~~~~~~~el~~~l~~L~~q~~~a~~--------y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 257 (1163)
T COG1196 186 ENLERLEDLLEELEKQLEKLERQAEKAER--------YQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888888877765421 1123455666777778888888888777777777777555433
Q ss_pred Cccc---chhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchHHhhHHHHHHHhhhHHHhhHhHhHHHH
Q psy11911 89 LSAM---TCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTF 165 (279)
Q Consensus 89 v~lV---teerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~ 165 (279)
..-- .+.++...-.-+..++..+..-+..++++-. .--++|.+++.+.++.-.+..+....-.++..+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~---------~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1163)
T COG1196 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKE---------EIEELEGEISLLRERLEELENELEELEERLEEL 328 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 1333333333344444444433333333322 223455555555555555555544444444444
Q ss_pred HHHHHHHHhhHhH---HHHHHHHHHhhhc
Q psy11911 166 TEYWLEYQTLADR---LESWMDAHQNQIE 191 (279)
Q Consensus 166 lkhW~~Y~~~s~~---L~~WL~sA~~~L~ 191 (279)
.+--...+..-.+ +..++......+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 357 (1163)
T COG1196 329 KEKIEALKEELEERETLLEELEQLLAELE 357 (1163)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444443333 2445444444443
No 15
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=42.54 E-value=48 Score=24.27 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchHHhhHHHHHHHh
Q psy11911 97 YKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILN 150 (279)
Q Consensus 97 l~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~l~e~wl~ 150 (279)
+..+-..|+.+.....++..+=..+++.++.|..+-.....-..+..|.+.|=+
T Consensus 15 ~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~~~~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 15 FDRRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWKEAAEEIKELQQEWKE 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999887766777777777777754
No 16
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.08 E-value=7e+02 Score=29.51 Aligned_cols=93 Identities=9% Similarity=-0.006 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhh--cccCCCchHHhhHHHHHHHhhhHHHhhHhHhHHHHHHHHHHHHhhH
Q psy11911 99 QYESLFKALDEDMKVHLVRTTQLVSVCRSITN--LIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLA 176 (279)
Q Consensus 99 erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~--~V~cp~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~~Y~~~s 176 (279)
++......+...+..|+..+ +-++.++.+.. .++-.+|+.-+..+...--..+..+..-=+++....+.-..++...
T Consensus 401 elqqel~elQ~el~q~qq~i-~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~ 479 (1486)
T PRK04863 401 DYQQALDVQQTRAIQYQQAV-QALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAY 479 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333 44667777774 7777888888888888877777777755555555444444444433
Q ss_pred hH------------HHHHHHHHHhhhcc
Q psy11911 177 DR------------LESWMDAHQNQIES 192 (279)
Q Consensus 177 ~~------------L~~WL~sA~~~L~~ 192 (279)
.. --+|-+++..++..
T Consensus 480 ~~l~~~~Gkv~~~~a~~~~~~~~~~~~~ 507 (1486)
T PRK04863 480 QLVRKIAGEVSRSEAWDVARELLRRLRE 507 (1486)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHhHH
Confidence 32 23466666665553
No 17
>COG3184 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.44 E-value=2.1e+02 Score=26.16 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q psy11911 44 ACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVS 123 (279)
Q Consensus 44 A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe~~e~~iP~v~lVteerl~erIslYQ~l~~~l~~hq~kL~Q~l~ 123 (279)
...|+++-..+.-. ++.+|..||.++--+.. . ..|++++..-+.+|+| .
T Consensus 75 ~~~i~~r~~ekal~---lA~~~~dle~e~~~~Ya--~----------~FT~eEl~ai~aFY~S----------------p 123 (183)
T COG3184 75 QALILERYDEKALK---LAPRRADLEREAALLYA--K----------IFTEEELNAITAFYGS----------------P 123 (183)
T ss_pred HHHHHHHHHHHHHH---hcccHHHhhHHHHHHHH--H----------hcCHHHHHHHHHHHcC----------------c
Confidence 33444444444433 68899999999887775 2 3489999999999986 5
Q ss_pred hhhhhhhcccCCCchHHhhHHHHHHHhh-----hHHHhhHhHh
Q psy11911 124 VCRSITNLIDCPHLEPATESHRFEILNL-----ERSISSGLIK 161 (279)
Q Consensus 124 ~gk~L~~~V~cp~LE~q~~~l~e~wl~l-----~~kV~~eL~R 161 (279)
.||+|+.- -|-+=..+.++-+.|++. +.++-.+|.+
T Consensus 124 aGkklL~k--~Pi~trel~kaa~~w~agiardl~~~~me~L~k 164 (183)
T COG3184 124 AGKKLLDK--GPILTRELMKAAQIWTAGIARDLTPELMEDLDK 164 (183)
T ss_pred hhHHHHhc--CcHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 67777764 578888899999999986 5555555544
No 18
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=38.66 E-value=2.1e+02 Score=23.09 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=38.7
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc--CCCCccc-----chhhHHHHHHHHHHHHHhhh
Q psy11911 47 ILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQR--VPNLSAM-----TCSDYKQYESLFKALDEDMK 112 (279)
Q Consensus 47 iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe~~e~~--iP~v~lV-----teerl~erIslYQ~l~~~l~ 112 (279)
.++--..++.....+...+..+-..-.....|++.+..+ .+..++- --+|+.+|--+++.|.....
T Consensus 83 ~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~ 155 (180)
T PF00621_consen 83 FLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSPESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTP 155 (180)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSS
T ss_pred cccceeccchheechhhhhhHHHhhccccccccccccccccccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCC
Confidence 334455667777777777777777777788899987662 1222211 14555555555555554444
No 19
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=37.72 E-value=1.4e+02 Score=23.13 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccC-CCchHHhhHHHHHHHhhhHHHhhHhHhHHHHH
Q psy11911 99 QYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDC-PHLEPATESHRFEILNLERSISSGLIKLSTFT 166 (279)
Q Consensus 99 erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~c-p~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~l 166 (279)
+.-..-+.|+.+|..-...+-++-.--+.++....- |.+-.+++.+.+....+.+.|...|++|....
T Consensus 5 ~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~ 73 (117)
T smart00503 5 EFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKEN 73 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333444555555554444444444444444444332 45778899999999999999999999986543
No 20
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=36.53 E-value=2.9e+02 Score=24.13 Aligned_cols=86 Identities=10% Similarity=0.151 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhHH---HHHHHHHhHHHHHHH--HHHHHHHHHHHHhcCCCCccc-------c-hhhHHHHHHHHH
Q psy11911 39 QLHQQACDILDKAAIRSQ---QMALAASKWISLDQN--LHEEAAWLNIVQQRVPNLSAM-------T-CSDYKQYESLFK 105 (279)
Q Consensus 39 eL~~~A~~iL~~A~~Rg~---~Le~~ls~W~~Ld~~--~~~~~~wLe~~e~~iP~v~lV-------t-eerl~erIslYQ 105 (279)
.+...+..|.++-..-|. ++..++..|...|.+ +...-..+..+...+-.+... + .+-+.+|+....
T Consensus 42 ~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~ 121 (236)
T PF09325_consen 42 KLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIE 121 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444443 334455678888777 433333333333222222111 1 445678888888
Q ss_pred HHHHhhhhhhHHHHHHHhh
Q psy11911 106 ALDEDMKVHLVRTTQLVSV 124 (279)
Q Consensus 106 ~l~~~l~~hq~kL~Q~l~~ 124 (279)
+++.-+......++++-..
T Consensus 122 svk~~l~~R~~~~~~~~~a 140 (236)
T PF09325_consen 122 SVKEALNRRDKKLIEYQNA 140 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9988888887777665433
No 21
>cd00522 Hemerythrin Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the muscle tissue of sipunculids as well as in polycheate and oligocheate annelids. In addition to oxygen transport, Mhr proteins are involved in cadmium fixation and host anti-bacterial defense. Hr and Mhr proteins have the same "four alpha helix bundle" motif and active site structure. Hr forms oligomers, the octameric form being most prevalent, while Mhr is monomeric.
Probab=35.99 E-value=1.6e+02 Score=23.51 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=37.3
Q ss_pred hhhHhhhcchhHHHHH--------------------HHHhhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy11911 3 KYRTFFMNLSHCRSLL--------------------ESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAA 62 (279)
Q Consensus 3 Khk~FF~~L~h~~~iL--------------------Esl~~kld~~t~~k~~~~h~eL~~~A~~iL~~A~~Rg~~Le~~l 62 (279)
.||++|.-++.+...+ |.+-++..-+-+..|...|..+..+...+..+. +.++...+
T Consensus 18 qH~~L~~l~n~l~~a~~~~~~l~~L~~y~~~HF~~EE~~M~~~~yp~~~~H~~~H~~f~~~~~~~~~~~---~~~~~~~l 94 (113)
T cd00522 18 EHKTLFNGINDLSEANNRADNLKELVDYTVKHFKDEEALMEAAGYPDYEEHKKIHEDFVEKVGGLKAPV---GQADLKYL 94 (113)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 5888888777654332 333334444456778888888888888876554 44444455
Q ss_pred HhH
Q psy11911 63 SKW 65 (279)
Q Consensus 63 s~W 65 (279)
..|
T Consensus 95 ~~W 97 (113)
T cd00522 95 KDW 97 (113)
T ss_pred HHH
Confidence 555
No 22
>KOG4715|consensus
Probab=35.62 E-value=2e+02 Score=28.90 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccc-chhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchHHhhH
Q psy11911 65 WISLDQNLHEEAAWLNIVQQRVPNLSAM-TCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATES 143 (279)
Q Consensus 65 W~~Ld~~~~~~~~wLe~~e~~iP~v~lV-teerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~ 143 (279)
-.+|..|++-.+.-|- ++-||||.-| |. -|......=.++|..||.||---|- .+|.....
T Consensus 192 ~arf~rN~rLIsei~S--esvVpDvrsVVtt----~RMqvlkrQv~SL~~HQ~KLEaEL~------------q~Ee~hq~ 253 (410)
T KOG4715|consen 192 TARFQRNHRLISEILS--ESVVPDVRSVVTT----ARMQVLKRQVQSLMVHQRKLEAELL------------QIEERHQE 253 (410)
T ss_pred hhhhhhhhHHHHHHhc--cccccchhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 3467778877776654 4578999877 33 3555666777899999999843221 34555555
Q ss_pred HHHHHHhhhHHHhhHhHhHHHHHHHHHHHHhhHhHHHHHHHHHHhhhcc
Q psy11911 144 HRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIES 192 (279)
Q Consensus 144 l~e~wl~l~~kV~~eL~RL~~~lkhW~~Y~~~s~~L~~WL~sA~~~L~~ 192 (279)
---.++.-++..+.+|.||-.++= =..+++...++-.|-+.+.++++.
T Consensus 254 kKrk~~estdsf~~eLKr~c~~kv-evd~eK~~~~i~q~eeq~rkr~eE 301 (410)
T KOG4715|consen 254 KKRKFLESTDSFNNELKRLCGLKV-EVDMEKMAAEIAQAEEQARKRQEE 301 (410)
T ss_pred HHHHHHhccHHHHHHHHHhcCCcc-cccHHHHHHHHHHHHHHHHHhHhH
Confidence 555788888999999999987665 677888999999999999888863
No 23
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.15 E-value=5.5e+02 Score=26.85 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q psy11911 50 KAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSA 91 (279)
Q Consensus 50 ~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe~~e~~iP~v~l 91 (279)
+-.....+.+.+.+.|..++.......+.++.+...+=+.|-
T Consensus 217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445566677777888888888888888888776665553
No 24
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.42 E-value=4e+02 Score=24.50 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCccc----chhhHHHHHHHHHHHHHhhh--------hhhHHHHHHHhhhhhhhhc
Q psy11911 64 KWISLDQNLHEEAAWLNIVQQRVPNLSAM----TCSDYKQYESLFKALDEDMK--------VHLVRTTQLVSVCRSITNL 131 (279)
Q Consensus 64 ~W~~Ld~~~~~~~~wLe~~e~~iP~v~lV----teerl~erIslYQ~l~~~l~--------~hq~kL~Q~l~~gk~L~~~ 131 (279)
+|..+..++....+-++.+....-+-+.. ..|+|..+..+|++++.-.+ +|+.-...+-.-.++|..+
T Consensus 85 ~~~~l~~~l~~~s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l 164 (246)
T cd07597 85 TWGDINEGLSSLSKHFQLLSDLSEDEARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESL 164 (246)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 35777777777777777664443333333 37888888888888887666 4444444555556677776
Q ss_pred ccCC-CchHHhhHHHHHHHhhhHHHhhHhHh
Q psy11911 132 IDCP-HLEPATESHRFEILNLERSISSGLIK 161 (279)
Q Consensus 132 V~cp-~LE~q~~~l~e~wl~l~~kV~~eL~R 161 (279)
..-| .=...+.++...+.+-++.|..-+.|
T Consensus 165 ~~~~~~~~~e~ekl~~~i~~d~~~i~~q~~R 195 (246)
T cd07597 165 RAKPDVKGAEVDKLEASIIKDKESIANQLNR 195 (246)
T ss_pred hcCCCCchhHHHHHHHHHhccHHHHHHHHHH
Confidence 6665 44566677777777766666654433
No 25
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.94 E-value=6.9e+02 Score=27.07 Aligned_cols=145 Identities=11% Similarity=0.131 Sum_probs=80.3
Q ss_pred HHHhhcCChhhhhhhHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccc---
Q psy11911 19 ESLESHLDPATRNKFSELH--KQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMT--- 93 (279)
Q Consensus 19 Esl~~kld~~t~~k~~~~h--~eL~~~A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe~~e~~iP~v~lVt--- 93 (279)
+.+.+++.-...++..|+. .++..+-..|-+.|++-+..++.|..+=..|.+.++.+.+ .+..+.|.++.-+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~---~l~~~~P~LS~AEr~~ 637 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ---LLNSQLPVLSEAEREF 637 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhccCCCCCHHHHHH
Confidence 4445555555555554433 2355556666667777777777777776677666666555 4467889876654
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHH-HHHHh--hhh-hhhhcccCCCchHHhhHHHHHHHhhhHHHhhHhHhHHHHHHH
Q psy11911 94 CSDYKQYESLFKALDEDMKVHLVRT-TQLVS--VCR-SITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEY 168 (279)
Q Consensus 94 eerl~erIslYQ~l~~~l~~hq~kL-~Q~l~--~gk-~L~~~V~cp~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~lkh 168 (279)
-+.+...-.--++|+.+|+.=-.|+ ||-.. -++ .--.++ .--++|.....+......++|..-...+..+.++
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~--~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSI--VLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112211122344555555443333 12111 111 111222 2346777777777778888888777777776665
No 26
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=30.46 E-value=7e+02 Score=26.65 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=105.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchHHhhHHHHHHHhhhHHHhhH----------hHhHH
Q psy11911 94 CSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSG----------LIKLS 163 (279)
Q Consensus 94 eerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~l~e~wl~l~~kV~~e----------L~RL~ 163 (279)
+.+.++--.+|...-+.++.+---....++.-|-+....+ |.+-+.||..+=.|.++|... |.||.
T Consensus 13 ~~~~~~~~~~Y~~~l~q~d~yn~~f~~F~~S~ke~I~~m~----~~~~~~L~~eI~~LK~~~q~s~d~y~kYKLKLeR~~ 88 (574)
T PF07462_consen 13 EADDFEMENIYEKHLSQIDKYNDYFKKFLESKKELINKMT----EEKWNALGEEIEELKKKIQVSLDHYGKYKLKLERLL 88 (574)
T ss_pred chhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 5667788889999999999998888888888887776665 568999999999999999854 45666
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHhhhccccCc----cchhHHHHHHHHhh---hhhhhhh----------hhhhHHHhh
Q psy11911 164 TFTEYWLEYQTLADRLESWMDAHQNQIESLNKS----NNMKSYWELKAQIE---FYNTLLD----------RSRDNFENA 226 (279)
Q Consensus 164 ~~lkhW~~Y~~~s~~L~~WL~sA~~~L~~l~vp----d~l~~F~Efskeve---~ksslk~----------s~~~~~~qa 226 (279)
.=.+.-.++....-+|+--=..-+.|+++|+.| .+-.-||-=++|.| +-|.||+ .+.-.---+
T Consensus 89 ~Kk~ki~~sk~~ik~lt~lK~~L~~r~n~lN~p~~vl~n~~vfFnKkrEaek~eveNtlkNt~iLlkyYKa~~Kyy~gE~ 168 (574)
T PF07462_consen 89 KKKNKISNSKEQIKKLTILKNKLERRQNLLNNPTSVLKNFTVFFNKKREAEKKEVENTLKNTEILLKYYKARAKYYIGEP 168 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCC
Confidence 666677777777777776666666777789999 66667777777776 4466666 111111122
Q ss_pred hcccCcchHHHHHHH
Q psy11911 227 MRVFPVSDEVLQRQL 241 (279)
Q Consensus 227 L~~~~i~De~~~R~~ 241 (279)
.-+.-++++-+||..
T Consensus 169 ~PLKTlSe~SlqkEd 183 (574)
T PF07462_consen 169 FPLKTLSEESLQKED 183 (574)
T ss_pred cccccccHHHHhhhh
Confidence 335567888888864
No 27
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.05 E-value=4.5e+02 Score=24.36 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=96.3
Q ss_pred hhhHhhhcchhHHHHHHHHhhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH-------HHHHHHHHH
Q psy11911 3 KYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWI-------SLDQNLHEE 75 (279)
Q Consensus 3 Khk~FF~~L~h~~~iLEsl~~kld~~t~~k~~~~h~eL~~~A~~iL~~A~~Rg~~Le~~ls~W~-------~Ld~~~~~~ 75 (279)
.+|.|-..++.+....+.|+.+.-.....-..+|=.+...+...+.+.+......+..+-+.=. .|+..+.++
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888887766666666777788888888888888877777766654433 333333333
Q ss_pred HHHHHHHHhcC----------CCCcccchhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchHHhhHHH
Q psy11911 76 AAWLNIVQQRV----------PNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHR 145 (279)
Q Consensus 76 ~~wLe~~e~~i----------P~v~lVteerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~l~ 145 (279)
....+.+..+- -.++.+++ ..-...|+.+..-+++-..+.-=.-+-+ .-+-.+++.++.+++
T Consensus 133 ~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kiee~ea~a~~~~el~-----~~~~~dl~~e~a~~~ 204 (225)
T COG1842 133 RAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIEEREARAEAAAELA-----EGSGDDLDKEFAQAG 204 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHhHHhh-----ccCcccHHHHHHHhc
Confidence 33333332221 11222222 4556677888888877776643222211 456678999999988
Q ss_pred HHHHhhhHHHhhHhHhHHH
Q psy11911 146 FEILNLERSISSGLIKLST 164 (279)
Q Consensus 146 e~wl~l~~kV~~eL~RL~~ 164 (279)
. ...|...|-+|.+
T Consensus 205 ~-----~~~v~~~La~lka 218 (225)
T COG1842 205 A-----QSAVDSRLAALKA 218 (225)
T ss_pred c-----cccHHHHHHHHHH
Confidence 7 8888888888765
No 28
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.11 E-value=1e+03 Score=28.19 Aligned_cols=211 Identities=11% Similarity=0.113 Sum_probs=97.7
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH----------HHHHHHHHHHHHhcCCCCcccch
Q psy11911 25 LDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQN----------LHEEAAWLNIVQQRVPNLSAMTC 94 (279)
Q Consensus 25 ld~~t~~k~~~~h~eL~~~A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~----------~~~~~~wLe~~e~~iP~v~lVte 94 (279)
|+++|.+..-.--++-..+|..--+-|...|..|+.+-..+..|..+ |....+.++.+.+++-.+.
T Consensus 887 l~~~~~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~---- 962 (1486)
T PRK04863 887 LADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALT---- 962 (1486)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 45566655555555555666666666777777777777666665433 2222222222222222221
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccC--CCchHHhhHHHHHHHhhhHHHhhHhHhHHHHHHHHHHH
Q psy11911 95 SDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDC--PHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEY 172 (279)
Q Consensus 95 erl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~c--p~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~~Y 172 (279)
++++|-.-| + ++.-..+++++-.|...|.- -.+|.+..++.+.|-..++..++.-..+..+
T Consensus 963 -~~~~~~~~~-------~--y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~sl------- 1025 (1486)
T PRK04863 963 -EVVQRRAHF-------S--YEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASL------- 1025 (1486)
T ss_pred -HHHHHHHhc-------c--HHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 111111100 0 22222333333322211110 0123333344444444444433333333333
Q ss_pred HhhHhHHHHHHHHHHhhhccccCc--cchhHHHHHHHHhhhhhhhhh--hhhhHHH--------------hhhcccCcch
Q psy11911 173 QTLADRLESWMDAHQNQIESLNKS--NNMKSYWELKAQIEFYNTLLD--RSRDNFE--------------NAMRVFPVSD 234 (279)
Q Consensus 173 ~~~s~~L~~WL~sA~~~L~~l~vp--d~l~~F~Efskeve~ksslk~--s~~~~~~--------------qaL~~~~i~D 234 (279)
++.-..+..=+..++..|+.+.|| ..+..=..... =+.+..|.. +-+++++ +-|.-.. .|
T Consensus 1026 ksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~-~e 1103 (1486)
T PRK04863 1026 KSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR-DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLE-RD 1103 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 333335555677788888888888 33322111111 113333333 3333333 3333222 36
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhh
Q psy11911 235 EVLQRQLYGQLEDRWNKLVSCVTE 258 (279)
Q Consensus 235 e~~~R~~l~q~e~~W~~l~~~ip~ 258 (279)
-..+|+....+-++|-.|+.-.+.
T Consensus 1104 ~~~~re~I~~aK~~W~~v~~~~~~ 1127 (1486)
T PRK04863 1104 YHEMREQVVNAKAGWCAVLRLVKD 1127 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888888999999988876653
No 29
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=26.20 E-value=2.3e+02 Score=26.58 Aligned_cols=86 Identities=13% Similarity=0.263 Sum_probs=58.7
Q ss_pred HHHHHHHhhhhhhhhcccCCCchHHhhHHHHHHHhhhHHHhhHh--------HhHHHHHHHHHHHHhhHhHH--------
Q psy11911 116 VRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGL--------IKLSTFTEYWLEYQTLADRL-------- 179 (279)
Q Consensus 116 ~kL~Q~l~~gk~L~~~V~cp~LE~q~~~l~e~wl~l~~kV~~eL--------~RL~~~lkhW~~Y~~~s~~L-------- 179 (279)
..|+.+++++..|- +.||++ .++.++.+..-+-+.++..-| ..++.+++...+|.-+..++
T Consensus 86 ~~l~~Ll~e~~~L~--~~~pEi-~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~ 162 (335)
T PF08429_consen 86 EELEALLEEIESLP--FDCPEI-DQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLE 162 (335)
T ss_pred HHHHHHHHHHhcCC--eeCchH-HHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHH
Confidence 34677777777654 578884 558888888888888777666 45777777777776666555
Q ss_pred -HHHHHHHHhhhcccc-Cc-cchhHHHH
Q psy11911 180 -ESWMDAHQNQIESLN-KS-NNMKSYWE 204 (279)
Q Consensus 180 -~~WL~sA~~~L~~l~-vp-d~l~~F~E 204 (279)
..|+..|.+-+.... ++ +.|+.|.+
T Consensus 163 ~~~W~~~~~~~~~~~~~~tL~~l~~Ll~ 190 (335)
T PF08429_consen 163 QLEWLEEAREILSDPDRLTLDELRELLD 190 (335)
T ss_pred HHHHHHHHHHHhccccCCcHHHHHHHHH
Confidence 469999998776532 22 45555544
No 30
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.59 E-value=1.5e+02 Score=27.12 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCCcccc-----hhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcc
Q psy11911 78 WLNIVQQRVPNLSAMT-----CSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLI 132 (279)
Q Consensus 78 wLe~~e~~iP~v~lVt-----eerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V 132 (279)
.++.+-..+..+|.|. .+|+.+...-.+.=..++.....||..+++.++.+-+.+
T Consensus 106 ~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l 165 (262)
T PF14257_consen 106 KFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLL 165 (262)
T ss_pred HHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4444444555667663 667764333334444456667777788877777655443
No 31
>PF00709 Adenylsucc_synt: Adenylosuccinate synthetase; InterPro: IPR001114 Adenylosuccinate synthetase (6.3.4.4 from EC) plays an important role in purine biosynthesis, by catalysing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterised from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present: one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins []. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein [].; GO: 0000287 magnesium ion binding, 0004019 adenylosuccinate synthase activity, 0005525 GTP binding, 0006164 purine nucleotide biosynthetic process, 0005737 cytoplasm; PDB: 3HID_A 1DJ3_B 2D7U_A 1DJ2_A 1P9B_A 1LON_A 1MF0_A 1LOO_A 1LNY_B 2DGN_A ....
Probab=24.45 E-value=90 Score=31.59 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=59.5
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccc-hhhHHHHHHHHHHHHHhhhhhhHHHHHHHhh
Q psy11911 46 DILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMT-CSDYKQYESLFKALDEDMKVHLVRTTQLVSV 124 (279)
Q Consensus 46 ~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe~~e~~iP~v~lVt-eerl~erIslYQ~l~~~l~~hq~kL~Q~l~~ 124 (279)
+.-+++.++|..+.-++ ....|.+.++....+....-..+.....++ ++-+.++...++.|+.-+.+--.-|...+..
T Consensus 134 ~y~dk~~R~gir~~DL~-~~~~l~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~al~~ 212 (421)
T PF00709_consen 134 AYADKVARRGIRVGDLL-DPEVLREKLKQILDEKNRLLEKLYGEEPLDVEEILEEYLEYAERLKPYVCDTVEFLNEALKE 212 (421)
T ss_dssp HHHHHHTT-S-BGGGGG-SHHHHHHHHHHHHHHHHHHHHHCSTT-HHHHHHHHHHHHHHHHHHGGCEE-HHHHHHHHHHT
T ss_pred HhhhhccCCCcEeeecC-CHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhCceecHHHHHHHHHHc
Confidence 68889999999998888 778888888887777655555555444444 5556688888899998888888888888888
Q ss_pred hhhhh
Q psy11911 125 CRSIT 129 (279)
Q Consensus 125 gk~L~ 129 (279)
||+++
T Consensus 213 gk~iL 217 (421)
T PF00709_consen 213 GKKIL 217 (421)
T ss_dssp T--EE
T ss_pred CCcEE
Confidence 98865
No 32
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=24.44 E-value=5.5e+02 Score=23.47 Aligned_cols=84 Identities=11% Similarity=0.106 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchHHhhH-----------HHHHHHhhhHHHhhHhHhHH
Q psy11911 95 SDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATES-----------HRFEILNLERSISSGLIKLS 163 (279)
Q Consensus 95 erl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~-----------l~e~wl~l~~kV~~eL~RL~ 163 (279)
.++.+-|.-...+.+.+++....+.++++....+...+.- -..++.. +...+-.+...+..-|+.|.
T Consensus 188 ~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~--~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~l~~l~ 265 (291)
T TIGR00996 188 GDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLAD--RDDALDDALAALSGASAQVRDLLAENRPNLPQALANLA 265 (291)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3445555555666666666666666666655555544321 1222222 12233334444445555555
Q ss_pred HHHHHHHHHHhhHhHHH
Q psy11911 164 TFTEYWLEYQTLADRLE 180 (279)
Q Consensus 164 ~~lkhW~~Y~~~s~~L~ 180 (279)
.+...+..|..+-+.+-
T Consensus 266 ~~~~~l~~~~~~l~~~l 282 (291)
T TIGR00996 266 PVLTLLVDYHPELEQLL 282 (291)
T ss_pred HHHHHHHhcchhHHHHH
Confidence 55555555444443333
No 33
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=24.35 E-value=3e+02 Score=20.44 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccC-CCchHHhhHHHHHHHhhhHHHhhHhHhHHHHHH
Q psy11911 99 QYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDC-PHLEPATESHRFEILNLERSISSGLIKLSTFTE 167 (279)
Q Consensus 99 erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~c-p~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~lk 167 (279)
+...-.+.|+.+|+.=...+-.+-.--++.+....- ++++.+++.+-..+-.+-..+...|.+|.+..+
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666777666666666665555555555551 258888888888888888888888888877644
No 34
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.70 E-value=8.3e+02 Score=25.30 Aligned_cols=126 Identities=8% Similarity=0.117 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH----------------------HHHHHHhcCCCCccc----chhhH
Q psy11911 44 ACDILDKAAIRSQQMALAASKWISLDQNLHEEAA----------------------WLNIVQQRVPNLSAM----TCSDY 97 (279)
Q Consensus 44 A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~~----------------------wLe~~e~~iP~v~lV----teerl 97 (279)
=+.+++.+++.|.-++.+-.....++.++.+... .|+.....||.+--- =.+.+
T Consensus 149 rk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql 228 (560)
T PF06160_consen 149 RKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQL 228 (560)
T ss_pred HHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Confidence 3578889999998888887777777766655544 455556667765433 16667
Q ss_pred HHHHHHHHHHHHh--------hhhhhHHHHHHHhhhhhhhhcccCCCchHHhhHHHHHHHhhhHHHhhHhHhHHHHHHHH
Q psy11911 98 KQYESLFKALDED--------MKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYW 169 (279)
Q Consensus 98 ~erIslYQ~l~~~--------l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~lkhW 169 (279)
.+--.-|+.+... +..-...+..-++.+...+......+.+..+..+.+.+=.+-+.+.+|..-=..+.+++
T Consensus 229 ~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~ 308 (560)
T PF06160_consen 229 EELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNL 308 (560)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7777777777763 55566677777777777777777888888888777777777666666654433333333
No 35
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.52 E-value=7.4e+02 Score=24.66 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q psy11911 53 IRSQQMALAASKWISLDQNLHEEAAWLNIVQQR 85 (279)
Q Consensus 53 ~Rg~~Le~~ls~W~~Ld~~~~~~~~wLe~~e~~ 85 (279)
.-..+++.+...+..+......+...++.+...
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~ 210 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK 210 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344445555555555555555555555555443
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.08 E-value=6.7e+02 Score=23.97 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Q psy11911 65 WISLDQNLHEEAAWLNIVQQRVPNL 89 (279)
Q Consensus 65 W~~Ld~~~~~~~~wLe~~e~~iP~v 89 (279)
=..|+.++..+.++++.+..-+|.+
T Consensus 158 ~~~L~~D~~~L~~~~~~l~~~~~~l 182 (325)
T PF08317_consen 158 LELLQEDYAKLDKQLEQLDELLPKL 182 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 37
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=22.68 E-value=6.3e+02 Score=24.47 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=55.7
Q ss_pred HHhhHHHHHHHhhhHHHhhHhHhHHHHHHHHHHHH---hhHhHHHHHHHHHHhhhccccCc--cchhHHHHHHHHhhhhh
Q psy11911 139 PATESHRFEILNLERSISSGLIKLSTFTEYWLEYQ---TLADRLESWMDAHQNQIESLNKS--NNMKSYWELKAQIEFYN 213 (279)
Q Consensus 139 ~q~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~~Y~---~~s~~L~~WL~sA~~~L~~l~vp--d~l~~F~Efskeve~ks 213 (279)
+++.+|...+-.|.+|++...--|.+|.-.=.=|. ..++-|..-|+ +-|.+ | +.+.. |++.++.++
T Consensus 2 ~~l~~l~~~i~~L~~k~~~~f~~lk~fi~e~~f~~~i~~~~~~L~~~m~---d~~~~---~~~~s~~~---F~~~y~~~~ 72 (345)
T PF05075_consen 2 EKLKELEKKIKELSEKMSAHFDDLKAFITENNFYMEIISPASTLMKYMR---DCLKH---PGKESIEN---FREAYEKNS 72 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHH---HHhhC---CCHHHHHH---HHHHHhcCC
Confidence 36788999999999999999988888855544444 44445555554 33433 5 43333 889999998
Q ss_pred hhhh----------hhhhHHHhhhc
Q psy11911 214 TLLD----------RSRDNFENAMR 228 (279)
Q Consensus 214 slk~----------s~~~~~~qaL~ 228 (279)
||+- .+.|-+--|+.
T Consensus 73 Pl~l~y~l~s~L~~~~TNPl~~am~ 97 (345)
T PF05075_consen 73 PLELAYTLMSLLEQKSTNPLKMAMD 97 (345)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHh
Confidence 8876 36666666665
No 38
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=22.16 E-value=4.5e+02 Score=22.09 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhh
Q psy11911 67 SLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCR 126 (279)
Q Consensus 67 ~Ld~~~~~~~~wLe~~e~~iP~v~lVteerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk 126 (279)
.+.++..++..-|+--++-+ .++.++|+-|+.+-+++.+.+-.--++..+|+
T Consensus 39 ~lkEEi~eLK~ElqRKe~Ll--------~Kh~~kI~~w~~lL~d~~~~~k~~~evp~e~~ 90 (106)
T PF11594_consen 39 VLKEEINELKEELQRKEQLL--------QKHYEKIDYWEKLLSDAQNQHKVPDEVPPEAR 90 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhccCchhccchHH
Confidence 45556666665555444443 78899999999999999998888888886655
No 39
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=21.69 E-value=7.9e+02 Score=24.27 Aligned_cols=169 Identities=16% Similarity=0.171 Sum_probs=97.0
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchHHhhHHHHHHHhhhHHHhhHhHhHHH----HHHHHHHHHhhHhHH
Q psy11911 104 FKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLST----FTEYWLEYQTLADRL 179 (279)
Q Consensus 104 YQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~l~e~wl~l~~kV~~eL~RL~~----~lkhW~~Y~~~s~~L 179 (279)
=+.|...|.-|++||.-.+.+...=+ .+=.+||-.+....|.|+.++++++.+...|.. +-.....=++-+.-|
T Consensus 86 kerLEtEiES~rsRLaaAi~d~dqsq--~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsL 163 (305)
T PF14915_consen 86 KERLETEIESYRSRLAAAIQDHDQSQ--TSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSL 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH--hhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 35677778888888888877765432 234789999999999999999999999987743 444444445555555
Q ss_pred HHHHHHHHhhhcc--ccCc---cchhHHHHHHHHhh-hhhh----hhhhhhhH--HHhhhcccCcchHHHHHHHHHhHHH
Q psy11911 180 ESWMDAHQNQIES--LNKS---NNMKSYWELKAQIE-FYNT----LLDRSRDN--FENAMRVFPVSDEVLQRQLYGQLED 247 (279)
Q Consensus 180 ~~WL~sA~~~L~~--l~vp---d~l~~F~Efskeve-~kss----lk~s~~~~--~~qaL~~~~i~De~~~R~~l~q~e~ 247 (279)
..=|..+.+.|.- |... .++++=--=.||++ .+.+ +...+|-+ ++.=|.=+. +.-|.+|+-|.--..
T Consensus 164 e~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Qlq-sEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 164 EIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQ-SENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5555556555542 1111 33333333334444 1112 22222222 111111111 577777875544444
Q ss_pred HHHHHHhhhhhhccCCccccccchhhhc
Q psy11911 248 RWNKLVSCVTEQNPSFDGNVDFTQFEYE 275 (279)
Q Consensus 248 ~W~~l~~~ip~iQe~~~~~~~~~~~~~~ 275 (279)
+=..--.-+..||..+.++|.=-+.+++
T Consensus 243 K~~~kek~ViniQ~~f~d~~~~L~ae~e 270 (305)
T PF14915_consen 243 KADNKEKTVINIQDQFQDIVKKLQAESE 270 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333577888888777765555543
No 40
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=21.48 E-value=3.3e+02 Score=21.50 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHh----cCCCCcc
Q psy11911 42 QQACDILDKAAIRSQQMALAASKWISLDQNLHEEA------AWLNIVQQ----RVPNLSA 91 (279)
Q Consensus 42 ~~A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~~~~------~wLe~~e~----~iP~v~l 91 (279)
.+...++++.++-=.+|+.++.+|......|+++. .|..-.+. .+|+-+.
T Consensus 3 ~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e~~e~g~~~~~~~ 62 (90)
T PF14131_consen 3 QEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYYGSEEWMEDYEASEQGDLPTDGK 62 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHhHHHHHHHHhCCCCCCCcc
Confidence 44566777777777888899999999999998875 46666554 4785443
No 41
>KOG3390|consensus
Probab=21.21 E-value=3.9e+02 Score=22.77 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=37.2
Q ss_pred HHHhhhhhhhhcccCCCchHHhhHHHHHHHhhhHHHhhHhHhHHHHHHHHHHHHhhHhHHHHHHHHHHhhhcc
Q psy11911 120 QLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIES 192 (279)
Q Consensus 120 Q~l~~gk~L~~~V~cp~LE~q~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~~Y~~~s~~L~~WL~sA~~~L~~ 192 (279)
.+-.+.|+|..-+ .++++--++|+..++-||..|. +.+..+.|+++-+-.+.-
T Consensus 55 rld~E~k~l~~~~------A~faKQT~QWl~vte~~N~AlK--------------EIGDvENW~ktiE~Dmk~ 107 (120)
T KOG3390|consen 55 RLDSEIKNLAITV------AKFAKQTDQWLAVTEAVNSALK--------------EIGDVENWMKTIEFDMKK 107 (120)
T ss_pred HHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHhHHHH
Confidence 3445556555433 4566667899999999998774 567888999887765543
No 42
>PHA03247 large tegument protein UL36; Provisional
Probab=20.92 E-value=1.6e+03 Score=29.03 Aligned_cols=132 Identities=10% Similarity=0.099 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCCCcccc--------hhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcccCCCchHHhhHHHHHH
Q psy11911 77 AWLNIVQQRVPNLSAMT--------CSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEI 148 (279)
Q Consensus 77 ~wLe~~e~~iP~v~lVt--------eerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~~l~e~w 148 (279)
.||+.+.+-|=+=-+.+ =++|.+||.-...|.+.+++ |..+|...+--|
T Consensus 1671 eWL~qAr~IiDsHpLT~~~~d~~GPm~~yaeRidaL~~lR~~ld~-----------------------Lrr~le~AEaaW 1727 (3151)
T PHA03247 1671 DWLEHARRVFEAHPLTAARGGGPDPLARLHARLDALGETRRRTEA-----------------------LRRSLEAAEAEW 1727 (3151)
T ss_pred HHHHHHHHHhccCCcceeccCCCCccHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 69999988877665543 36799999988888876654 333444444444
Q ss_pred HhhhHHHhhHhHhHHHHHHHHHHHHhhHhHHH---HHHHHHHhhhccccCc----cchhHH-------HHHHHHhhhhhh
Q psy11911 149 LNLERSISSGLIKLSTFTEYWLEYQTLADRLE---SWMDAHQNQIESLNKS----NNMKSY-------WELKAQIEFYNT 214 (279)
Q Consensus 149 l~l~~kV~~eL~RL~~~lkhW~~Y~~~s~~L~---~WL~sA~~~L~~l~vp----d~l~~F-------~Efskeve~kss 214 (279)
= +-|.+|.+.-++.. +=+..|.+++.-+... +-|++= -+|+.-+|.|..
T Consensus 1728 D-----------------eaW~~F~r~~~~~~~S~e~~~~A~~~a~aLQas~~~V~~Lrad~~Y~RLPak~~g~i~aK~a 1790 (3151)
T PHA03247 1728 D-----------------EVWGRFGRVRGGAWKSPEALRAAREQLRALQTATNTVLGLRADAHYERLPAKYQGALGAKSA 1790 (3151)
T ss_pred H-----------------HHHHHHHHhccccccChHHHHHHHHHHHHHHHHHHHHHhhhcchhhccCCHHHhchhhHHHH
Confidence 2 77888888764432 3344555555532222 111111 233333444443
Q ss_pred hhhhhhhHHH---------------hh-hcccCcchHHHHHHHHHhHHHH
Q psy11911 215 LLDRSRDNFE---------------NA-MRVFPVSDEVLQRQLYGQLEDR 248 (279)
Q Consensus 215 lk~s~~~~~~---------------qa-L~~~~i~De~~~R~~l~q~e~~ 248 (279)
-|..+-..|. -. =||-+..|-..+|.++++|+.-
T Consensus 1791 eR~~ale~f~~~~~~~e~~~~rl~d~l~~rip~E~~~d~Lr~lla~FD~~ 1840 (3151)
T PHA03247 1791 ERAGAVEELGAAVARHDGLLARLREEVVARVPWEMNADALGRLLAEFDAL 1840 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHHHH
Confidence 3332211111 11 1467889999999999999874
No 43
>KOG3520|consensus
Probab=20.58 E-value=5.9e+02 Score=29.48 Aligned_cols=81 Identities=9% Similarity=0.181 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHh-------cCCCCcccchhhHHHHHHHHHHHHHhhh---hhhHHHHHHHhhhhhhhhcccCCCchHHhh
Q psy11911 73 HEEAAWLNIVQQ-------RVPNLSAMTCSDYKQYESLFKALDEDMK---VHLVRTTQLVSVCRSITNLIDCPHLEPATE 142 (279)
Q Consensus 73 ~~~~~wLe~~e~-------~iP~v~lVteerl~erIslYQ~l~~~l~---~hq~kL~Q~l~~gk~L~~~V~cp~LE~q~~ 142 (279)
..+..|++.+++ .||+..++.-+|++.|==|++.|-..-. +-+-+|.+.++-+|.++..|+---=|..
T Consensus 508 ~rFq~fvkkaeS~p~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E-- 585 (1167)
T KOG3520|consen 508 KRFQAFVKKAESNPVCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAE-- 585 (1167)
T ss_pred HHHHHHHHHhhcchHHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345678888877 4889888888888888888887766543 5678999999999999988874322222
Q ss_pred HHHHHHHhhhHHHh
Q psy11911 143 SHRFEILNLERSIS 156 (279)
Q Consensus 143 ~l~e~wl~l~~kV~ 156 (279)
-+.++...+.|++
T Consensus 586 -~~~RL~eiq~RlD 598 (1167)
T KOG3520|consen 586 -KKQRLEEIQRRLD 598 (1167)
T ss_pred -HHHHHHHHHHhcc
Confidence 2234555555554
Done!