Your job contains 1 sequence.
>psy11911
MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL
AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQ
LVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLE
SWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQ
LYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYELDQL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11911
(279 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0261836 - symbol:Msp-300 "Muscle-specific protein ... 543 8.2e-50 1
RGD|620546 - symbol:Syne1 "spectrin repeat containing, nu... 162 2.3e-08 1
UNIPROTKB|F1S7X0 - symbol:F1S7X0 "Uncharacterized protein... 149 3.4e-06 2
MGI|MGI:1927152 - symbol:Syne1 "spectrin repeat containin... 143 1.1e-05 1
UNIPROTKB|F1NG02 - symbol:SYNE1 "Uncharacterized protein"... 140 2.5e-05 1
MGI|MGI:2449316 - symbol:Syne2 "spectrin repeat containin... 139 2.5e-05 1
UNIPROTKB|J9P7I2 - symbol:SYNE1 "Uncharacterized protein"... 151 2.7e-05 2
UNIPROTKB|F1PER7 - symbol:SYNE1 "Uncharacterized protein"... 151 2.7e-05 2
UNIPROTKB|I3LTM2 - symbol:SYNE2 "Uncharacterized protein"... 134 9.1e-05 1
UNIPROTKB|F1SRR5 - symbol:SYNE2 "Uncharacterized protein"... 134 9.1e-05 1
UNIPROTKB|F1Q3V9 - symbol:SYNE2 "Uncharacterized protein"... 133 0.00012 1
UNIPROTKB|Q8WXH0 - symbol:SYNE2 "Nesprin-2" species:9606 ... 132 0.00015 1
UNIPROTKB|E7ENN3 - symbol:SYNE1 "Nesprin-1" species:9606 ... 144 0.00020 2
UNIPROTKB|E9PEL9 - symbol:SYNE1 "Nesprin-1" species:9606 ... 144 0.00022 2
UNIPROTKB|Q8NF91 - symbol:SYNE1 "Nesprin-1" species:9606 ... 144 0.00022 2
UNIPROTKB|F1MF78 - symbol:SYNE2 "Uncharacterized protein"... 142 0.00029 2
>FB|FBgn0261836 [details] [associations]
symbol:Msp-300 "Muscle-specific protein 300" species:7227
"Drosophila melanogaster" [GO:0003779 "actin binding"
evidence=ISS;NAS;IDA] [GO:0015629 "actin cytoskeleton"
evidence=IDA] [GO:0008305 "integrin complex" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0008092 "cytoskeletal protein binding"
evidence=ISS] [GO:0007498 "mesoderm development" evidence=NAS]
[GO:0003725 "double-stranded RNA binding" evidence=NAS] [GO:0032313
"regulation of Rab GTPase activity" evidence=IEA] [GO:0005089 "Rho
guanyl-nucleotide exchange factor activity" evidence=IEA]
[GO:0035023 "regulation of Rho protein signal transduction"
evidence=IEA] [GO:0005097 "Rab GTPase activator activity"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0008335 "female
germline ring canal stabilization" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007303 "cytoplasmic transport, nurse
cell to oocyte" evidence=IMP] [GO:0007015 "actin filament
organization" evidence=IMP] [GO:0040023 "establishment of nucleus
localization" evidence=IMP] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0030018 "Z disc" evidence=IDA]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007519 "skeletal
muscle tissue development" evidence=IMP] [GO:0007523 "larval
visceral muscle development" evidence=IMP] [GO:0060361 "flight"
evidence=IMP] [GO:0031965 "nuclear membrane" evidence=IDA]
[GO:0051640 "organelle localization" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] InterPro:IPR000219 InterPro:IPR000195
InterPro:IPR012315 Pfam:PF10541 PROSITE:PS51049 GO:GO:0016021
GO:GO:0048471 GO:GO:0003779 GO:GO:0030018 GO:GO:0016477
EMBL:AE014134 GO:GO:0007015 GO:GO:0007498 GO:GO:0015629
GO:GO:0031965 GO:GO:0007303 GO:GO:0005089 SUPFAM:SSF48065
InterPro:IPR018159 SMART:SM00150 GeneTree:ENSGT00550000074593
GO:GO:0035023 GO:GO:0040023 GO:GO:0005097 GO:GO:0032851
SUPFAM:SSF47923 GO:GO:0007519 GO:GO:0007523 GO:GO:0060361
GO:GO:0008335 RefSeq:NP_001188695.1 UniGene:Dm.20325
ProteinModelPortal:E1JHU5 EnsemblMetazoa:FBtr0303387 GeneID:3771968
KEGG:dme:Dmel_CG42768 CTD:3771968 FlyBase:FBgn0261836 OMA:PTVEVTF
GenomeRNAi:3771968 NextBio:851953 Bgee:E1JHU5 Uniprot:E1JHU5
Length = 13,540
Score = 543 (196.2 bits), Expect = 8.2e-50, P = 8.2e-50
Identities = 105/264 (39%), Positives = 167/264 (63%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+QK R FF+NLSHCR++LESLE ++D TR K SELHK+L+ +A +LDKA+ RS ++
Sbjct: 11476 VQKQRKFFVNLSHCRAMLESLEENIDSETREKHSELHKELYNRATSLLDKASERSSKLVQ 11535
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQ 120
AAS+W L++ + +E WL + QQRVP+LSA+T +DY QY +L+++L D+ H V+ TQ
Sbjct: 11536 AASRWTVLEKGMRDELQWLQVAQQRVPDLSAVTSADYDQYTTLYQSLSNDISHHYVKMTQ 11595
Query: 121 LVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLE 180
L + + L+ P+L T +L L ++ L +L F E W++Y+ D+LE
Sbjct: 11596 LSGIANKLQLLVQAPNLVEETNEALIVLLKLREEVALYLHRLLVFKEIWVQYEQQTDKLE 11655
Query: 181 SWM-DAHQN----QIESL---NKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPV 232
+++ +A Q QI S +M+ +WE+KA+ E +N + + +FE +++V P+
Sbjct: 11656 AFVREAEQELRNIQIPSQPTHQPIEHMRQFWEIKARFELHNNVRTDTGLSFEKSLQVIPL 11715
Query: 233 SDEVLQRQLYGQLEDRWNKLVSCV 256
+DE+LQRQ + QLEDRW + +
Sbjct: 11716 ADEMLQRQFHAQLEDRWQAVAQAI 11739
>RGD|620546 [details] [associations]
symbol:Syne1 "spectrin repeat containing, nuclear envelope 1"
species:10116 "Rattus norvegicus" [GO:0003779 "actin binding"
evidence=ISO] [GO:0005102 "receptor binding" evidence=IPI]
[GO:0005198 "structural molecule activity" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005521 "lamin
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005635 "nuclear envelope" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO;IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0007030
"Golgi organization" evidence=ISO] [GO:0007420 "brain development"
evidence=IEP] [GO:0009416 "response to light stimulus"
evidence=IEP] [GO:0016021 "integral to membrane" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=IDA] [GO:0030017 "sarcomere"
evidence=ISO] [GO:0030496 "midbody" evidence=IDA] [GO:0031965
"nuclear membrane" evidence=ISO] [GO:0034993 "SUN-KASH complex"
evidence=ISO] [GO:0040023 "establishment of nucleus localization"
evidence=ISO] [GO:0042692 "muscle cell differentiation"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043197 "dendritic spine" evidence=IDA]
[GO:0045211 "postsynaptic membrane" evidence=ISO] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0048814 "regulation of dendrite morphogenesis"
evidence=IMP] [GO:0090286 "cytoskeletal anchoring at nuclear
membrane" evidence=ISO] [GO:0090292 "nuclear matrix anchoring at
nuclear membrane" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR002017 InterPro:IPR012315 Pfam:PF00435
Pfam:PF10541 PROSITE:PS51049 RGD:620546 GO:GO:0016021 GO:GO:0005794
GO:GO:0005635 GO:GO:0048471 GO:GO:0007420 GO:GO:0005819
GO:GO:0005198 GO:GO:0043197 GO:GO:0019899 GO:GO:0009416
GO:GO:0048814 InterPro:IPR018159 SMART:SM00150 GO:GO:0030496
GO:GO:0048260 HOVERGEN:HBG106534 IPI:IPI00607132 EMBL:AF452647
UniGene:Rn.226002 UniGene:Rn.89150 ProteinModelPortal:Q8VHJ9
STRING:Q8VHJ9 PhosphoSite:Q8VHJ9 PRIDE:Q8VHJ9 UCSC:RGD:620546
Genevestigator:Q8VHJ9 Uniprot:Q8VHJ9
Length = 2838
Score = 162 (62.1 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 48/223 (21%), Positives = 100/223 (44%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E+L + K ++LH QA +L +A R ++
Sbjct: 644 LSKHKEYFQGLESHLILTETLFRKIVDFAAMKETQLHSDRMAQASAVLKQAHKRGVELEY 703
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W LD+NL E + L +++ +P++ + S+ + E SL++ L + + +
Sbjct: 704 ILEMWSHLDENLQELSRQLEVIENSIPSVGLVEESEDRLVERTSLYQHLKSSLNEYQPKL 763
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q++ + + I C LE L +S L +L T ++W YQ+ A
Sbjct: 764 YQVLDDGKRLMMSISCSELESQLNQLGERWLGNTNKVSKELHRLETILKHWTRYQSEAAD 823
Query: 179 LESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRD 221
L W+++ ++++ + + + EL+ + N L+ S++
Sbjct: 824 LIHWLESAKDKLAFWTQQS-VTVPQELEMVRDHLNAFLEFSKE 865
>UNIPROTKB|F1S7X0 [details] [associations]
symbol:F1S7X0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003779 "actin binding" evidence=IEA] InterPro:IPR002017
InterPro:IPR012315 Pfam:PF00435 Pfam:PF10541 PROSITE:PS51049
GO:GO:0016021 InterPro:IPR018159 SMART:SM00150
GeneTree:ENSGT00690000102001 EMBL:CU467592
Ensembl:ENSSSCT00000004511 OMA:THYKSIM Uniprot:F1S7X0
Length = 2164
Score = 149 (57.5 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 52/268 (19%), Positives = 112/268 (41%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E+L + + ++ H +L QA +L +A R ++
Sbjct: 23 LDKHKEYFQGLESHMILTETLFRKIISFAVLQETQNHTELMAQASAVLKRAHKRGVELEY 82
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W LDQ+ E L +V+ +P++ + S+ + + +L++ L + + +
Sbjct: 83 ILETWSHLDQDHRELRRQLEMVESSIPSVGLVEESEDRLIDRITLYQHLKSSLNEYQPKL 142
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQ----- 173
Q++ + + + C LE LN ++ L +L T ++W YQ
Sbjct: 143 YQVLDDGKRLLMSVSCSDLESQLNQLGEHWLNDTNKVAKELHRLETILKHWTRYQRESSD 202
Query: 174 ------TLADRLESWMDAHQNQIESLNK-SNNMKSYWELKAQIEFYNTLLDRSRDNFENA 226
+ DRLE W + L +++ ++ E +++ +TL
Sbjct: 203 LIHWLQSAKDRLEFWTQQSVTVPQELEMVRDHLNAFLEFSKEVDAKSTLKSSVLSTGNQL 262
Query: 227 MRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+R+ V L+ +L ++ +WN L++
Sbjct: 263 LRLKKVDTAALRSEL-SHIDSQWNGLLT 289
Score = 38 (18.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 233 SDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYE 275
SD+ + G + W L VTE+ +G ++ + EYE
Sbjct: 383 SDKTDFAEQLGAMNKSWQILQGLVTEKIQLLEGLLE-SWSEYE 424
>MGI|MGI:1927152 [details] [associations]
symbol:Syne1 "spectrin repeat containing, nuclear envelope
1" species:10090 "Mus musculus" [GO:0003779 "actin binding"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005521 "lamin
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=ISO;ISA;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] [GO:0005819 "spindle" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0007030 "Golgi organization"
evidence=ISO] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030017 "sarcomere" evidence=ISA] [GO:0030496
"midbody" evidence=ISO] [GO:0034993 "SUN-KASH complex"
evidence=ISO] [GO:0040023 "establishment of nucleus localization"
evidence=IMP] [GO:0042692 "muscle cell differentiation"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=IDA] [GO:0043197 "dendritic spine" evidence=ISO]
[GO:0045211 "postsynaptic membrane" evidence=ISO] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] [GO:0048814 "regulation of dendrite morphogenesis"
evidence=ISO] [GO:0090286 "cytoskeletal anchoring at nuclear
membrane" evidence=ISO] [GO:0090292 "nuclear matrix anchoring at
nuclear membrane" evidence=ISO] InterPro:IPR001589
InterPro:IPR001715 InterPro:IPR002017 InterPro:IPR012315
Pfam:PF00307 Pfam:PF00435 Pfam:PF10541 PROSITE:PS00019
PROSITE:PS00020 PROSITE:PS50005 PROSITE:PS50021 PROSITE:PS50293
PROSITE:PS51049 SMART:SM00033 MGI:MGI:1927152 GO:GO:0016021
GO:GO:0005635 GO:GO:0042803 GO:GO:0005856 GO:GO:0030017
Reactome:REACT_118161 Reactome:REACT_120463 Reactome:REACT_75800
eggNOG:COG5069 Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150
SUPFAM:SSF47576 GO:GO:0005640 GO:GO:0040023
GeneTree:ENSGT00690000102001 CTD:23345 ChiTaRS:SYNE1 EMBL:AF281869
EMBL:AF281870 EMBL:AF535143 EMBL:AK036828 EMBL:AC156392
EMBL:AC156393 EMBL:AC157020 EMBL:AC159748 EMBL:AC161829
EMBL:AC162381 EMBL:AC162385 IPI:IPI00403993 IPI:IPI00461474
IPI:IPI00473373 IPI:IPI00816892 IPI:IPI00890038
RefSeq:NP_001073154.1 UniGene:Mm.331626 ProteinModelPortal:Q6ZWR6
SMR:Q6ZWR6 STRING:Q6ZWR6 PhosphoSite:Q6ZWR6 PaxDb:Q6ZWR6
PRIDE:Q6ZWR6 Ensembl:ENSMUST00000041639 Ensembl:ENSMUST00000095899
GeneID:64009 KEGG:mmu:64009 UCSC:uc007egn.1 UCSC:uc007egt.1
HOGENOM:HOG000120125 HOVERGEN:HBG106534 InParanoid:Q9ERT7
OMA:DIQSIEL OrthoDB:EOG4ZKJK9 NextBio:319851 Bgee:Q6ZWR6
Genevestigator:Q6ZWR6 Uniprot:Q6ZWR6
Length = 8799
Score = 143 (55.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 48/266 (18%), Positives = 111/266 (41%)
Query: 3 KYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAA 62
K++ +F L L E L + K ++ H QA +L +A R ++
Sbjct: 6632 KHKEYFQGLESHMILTEILFRKIVGFAAVKETQFHTDCMAQASAVLKQAHKRGVELEYIL 6691
Query: 63 SKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRTTQ 120
W LD+N E + L +++ +P++ + S+ + E +L++ L + + + Q
Sbjct: 6692 EMWSHLDENRQELSRQLEVIENSIPSVGLVEESEDRLVERTNLYQHLKSSLNEYQPKLYQ 6751
Query: 121 LVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLE 180
+ + + + C LE L+ +S L +L T ++W YQ+ A L
Sbjct: 6752 ALDDGKRLLMSVSCSELESQLNQLGEHWLSNTNKVSKELHRLETILKHWTRYQSEAAALN 6811
Query: 181 SWMDAHQNQI-----ESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFENAMR 228
W+ ++++ +S+ +++ ++ E +++ + L +R
Sbjct: 6812 HWLQCAKDRLAFWTQQSVTVPQELEMVRDHLSAFLEFSKEVDAKSALKSSVTSTGNQLLR 6871
Query: 229 VFPVSDEVLQRQLYGQLEDRWNKLVS 254
+ V L+ +L +++ +W L++
Sbjct: 6872 LKKVDTAALRAEL-SRMDSQWTDLLT 6896
>UNIPROTKB|F1NG02 [details] [associations]
symbol:SYNE1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003779 "actin binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001589 InterPro:IPR001715 InterPro:IPR002017
InterPro:IPR012315 Pfam:PF00307 Pfam:PF00435 Pfam:PF10541
PROSITE:PS00019 PROSITE:PS00020 PROSITE:PS50021 PROSITE:PS51049
SMART:SM00033 GO:GO:0016021 GO:GO:0005737 GO:GO:0031965
Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150 SUPFAM:SSF47576
GeneTree:ENSGT00690000102001 OMA:LMEARYS EMBL:AADN02025380
EMBL:AADN02025381 EMBL:AADN02025382 EMBL:AADN02025383
EMBL:AADN02025384 IPI:IPI00595507 Ensembl:ENSGALT00000021996
Uniprot:F1NG02
Length = 8787
Score = 140 (54.3 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 49/268 (18%), Positives = 112/268 (41%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E+L + K ++ H +L QA +L A R ++
Sbjct: 6617 LDKHKEYFQGLESHMILTETLFRKMSSFALLKETQSHSELIAQASTVLKLAHKRGVELEY 6676
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W+ LD+ E L V+ +P + + ++ K E LF+ L ++ + +
Sbjct: 6677 ILETWMHLDEAYQELTRQLESVEGNIPAVGLVEETEDKLTERIKLFQHLRSNLTEYQPKL 6736
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q++ + + + C LE L+ ++ L +L T ++W YQ+ +
Sbjct: 6737 YQVLDDGKRLLFSVSCSDLESQLNQLGEHWLSNTSKVNKELHRLETILKHWTRYQSESTE 6796
Query: 179 LESWMDAHQNQIESLNKSN------------NMKSYWELKAQIEFYNTLLDRSRDNFENA 226
L W+ + + ++E ++ + ++ S+ E +++ ++
Sbjct: 6797 LTHWLQSAKERLEFWSQQSLTVPQELETVRDHLSSFLEFSKEVDAKSSQKSSVLSTGNQL 6856
Query: 227 MRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+R+ V L+ L Q++ +W +L++
Sbjct: 6857 LRLKKVDTAALRAGL-SQIDSQWTELLT 6883
>MGI|MGI:2449316 [details] [associations]
symbol:Syne2 "spectrin repeat containing, nuclear envelope
2" species:10090 "Mus musculus" [GO:0003779 "actin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=ISO;IMP;IDA] [GO:0005640 "nuclear outer
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=ISO]
[GO:0006998 "nuclear envelope organization" evidence=IMP]
[GO:0007097 "nuclear migration" evidence=ISO] [GO:0007163
"establishment or maintenance of cell polarity" evidence=IMP]
[GO:0010761 "fibroblast migration" evidence=IMP] [GO:0016020
"membrane" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0016529 "sarcoplasmic reticulum" evidence=ISO]
[GO:0030016 "myofibril" evidence=IDA] [GO:0030018 "Z disc"
evidence=ISO;IDA] [GO:0030335 "positive regulation of cell
migration" evidence=IMP] [GO:0031022 "nuclear migration along
microfilament" evidence=IMP] [GO:0031258 "lamellipodium membrane"
evidence=ISO] [GO:0031527 "filopodium membrane" evidence=ISO]
[GO:0031981 "nuclear lumen" evidence=ISO] [GO:0034504 "protein
localization to nucleus" evidence=IMP] [GO:0034993 "SUN-KASH
complex" evidence=ISO] [GO:0044429 "mitochondrial part"
evidence=ISO] [GO:0051642 "centrosome localization"
evidence=ISO;IMP] [GO:0090286 "cytoskeletal anchoring at nuclear
membrane" evidence=ISO] InterPro:IPR001589 InterPro:IPR001715
InterPro:IPR002017 InterPro:IPR012315 Pfam:PF00307 Pfam:PF00435
Pfam:PF10541 PROSITE:PS00019 PROSITE:PS00020 PROSITE:PS50021
PROSITE:PS51049 SMART:SM00033 MGI:MGI:2449316 GO:GO:0016021
GO:GO:0005635 GO:GO:0003779 GO:GO:0005654 GO:GO:0005856
GO:GO:0007163 GO:GO:0051642 GO:GO:0005925 GO:GO:0006998
Reactome:REACT_118161 Reactome:REACT_120463 Reactome:REACT_75800
eggNOG:COG5069 Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150
SUPFAM:SSF47576 GO:GO:0030335 GO:GO:0031527 GO:GO:0005640
GO:GO:0031258 GO:GO:0010761 GO:GO:0033017 GO:GO:0034504
GeneTree:ENSGT00690000102001 GO:GO:0044429 EMBL:AC164121
GO:GO:0034993 GO:GO:0090286 GO:GO:0031022 CTD:23224 OMA:EDWHKFI
EMBL:AK052521 EMBL:AC115714 EMBL:AC159897 EMBL:AC166991
EMBL:BC082586 IPI:IPI00845851 IPI:IPI00918857 IPI:IPI00919041
RefSeq:NP_001005510.2 UniGene:Mm.26652 ProteinModelPortal:Q6ZWQ0
SMR:Q6ZWQ0 STRING:Q6ZWQ0 PhosphoSite:Q6ZWQ0 PaxDb:Q6ZWQ0
PRIDE:Q6ZWQ0 Ensembl:ENSMUST00000044217 GeneID:319565
KEGG:mmu:319565 UCSC:uc007nxm.1 UCSC:uc007nxp.1 UCSC:uc007nxs.1
HOGENOM:HOG000154474 HOVERGEN:HBG056327 InParanoid:Q6ZWQ0
OrthoDB:EOG4TTGGX NextBio:394990 Bgee:Q6ZWQ0 Genevestigator:Q6ZWQ0
Uniprot:Q6ZWQ0
Length = 6874
Score = 139 (54.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 52/270 (19%), Positives = 112/270 (41%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+Q ++ FF L L+++ + + P + K + + + ++A +R Q+
Sbjct: 4762 LQDHKAFFQKLVADMLLIQTYSATMFPPSLQKGEGFGAEQVAEVRALEEEACLRGAQLQS 4821
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
KW D N L + +P++S + ++ + E S ++ + ++ R
Sbjct: 4822 MLQKWEEFDDNYASLEKDLEALISSLPSVSLVEETEERLLERISFYQQIKRNIDGKHARL 4881
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEI--LNLERSISSGLIKLSTFTEYWLEYQTLA 176
Q ++ R + + CP EP + R E L+L + I L +L T ++ L Y +
Sbjct: 4882 CQTLNEGRQLAASVSCP--EPEGQIARLEEQWLSLNKRIDQELHRLQTLLKHLLSYSRDS 4939
Query: 177 DRLESWMDAHQNQI-----ESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFE 224
D L W++ Q + +SLN S +N+ +++ +++ ++L
Sbjct: 4940 DELTRWLETSQQTLNYWKEQSLNVSQDLNTIRSNIDRFFKFSKEVDERSSLKSAVMSTGN 4999
Query: 225 NAMRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+ + L+ L Q E +W L++
Sbjct: 5000 QLLHLKEADTATLRASL-AQFEQKWTVLIT 5028
>UNIPROTKB|J9P7I2 [details] [associations]
symbol:SYNE1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003779 "actin binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR001589
InterPro:IPR001715 InterPro:IPR002017 InterPro:IPR012315
Pfam:PF00307 Pfam:PF00435 Pfam:PF10541 PROSITE:PS00019
PROSITE:PS00020 PROSITE:PS50021 PROSITE:PS51049 SMART:SM00033
GO:GO:0016021 Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150
SUPFAM:SSF47576 GeneTree:ENSGT00690000102001 EMBL:AAEX03000277
Ensembl:ENSCAFT00000043078 Uniprot:J9P7I2
Length = 8749
Score = 151 (58.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 45/223 (20%), Positives = 101/223 (45%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E+L + + ++ H +L QA +L +A R ++
Sbjct: 6556 LDKHKEYFQGLESHMILTETLFRKIISFAVPQETQFHTELMAQASAVLKRAHKRGVELEY 6615
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W LD++ E + L +V+ +P++ + S+ + + +L++ L + + +
Sbjct: 6616 ILETWSHLDEDYQELSRQLEVVESSIPSVGLVEESEDRLIDRIALYQHLKSSLNEYQPKL 6675
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q++ + + I C LE LN +S L +L T ++W YQ+ +
Sbjct: 6676 YQVLDDGKRLLISISCSDLEGQLNQLGEHWLNNTNKVSKELHRLETVLKHWTRYQSESAE 6735
Query: 179 LESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRD 221
L W+ + ++++E + + + EL+ + N L+ S++
Sbjct: 6736 LIHWLQSAKDRLEFWTQQS-VTVPQELEMVRDHLNAFLEFSKE 6777
Score = 39 (18.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 233 SDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVD-FTQFEYELDQL 279
SD+ + G + W L VTE+ +G ++ ++++E + L
Sbjct: 6916 SDKTDFAEQLGAMNKSWQILQGLVTEKIQLLEGLLESWSEYENNVQSL 6963
Score = 37 (18.1 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 244 QLEDRWNKLVSCVTEQNPSFD 264
Q EDR N+L+ T ++ + D
Sbjct: 7186 QQEDRTNELLKAATNKDIADD 7206
>UNIPROTKB|F1PER7 [details] [associations]
symbol:SYNE1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003779 "actin binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR001589
InterPro:IPR001715 InterPro:IPR002017 InterPro:IPR012315
Pfam:PF00307 Pfam:PF00435 Pfam:PF10541 PROSITE:PS00020
PROSITE:PS50021 PROSITE:PS51049 SMART:SM00033 GO:GO:0016021
Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150 SUPFAM:SSF47576
GeneTree:ENSGT00690000102001 OMA:LMEARYS EMBL:AAEX03000277
Ensembl:ENSCAFT00000000760 Uniprot:F1PER7
Length = 8764
Score = 151 (58.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 45/223 (20%), Positives = 101/223 (45%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E+L + + ++ H +L QA +L +A R ++
Sbjct: 6592 LDKHKEYFQGLESHMILTETLFRKIISFAVPQETQFHTELMAQASAVLKRAHKRGVELEY 6651
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W LD++ E + L +V+ +P++ + S+ + + +L++ L + + +
Sbjct: 6652 ILETWSHLDEDYQELSRQLEVVESSIPSVGLVEESEDRLIDRIALYQHLKSSLNEYQPKL 6711
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q++ + + I C LE LN +S L +L T ++W YQ+ +
Sbjct: 6712 YQVLDDGKRLLISISCSDLEGQLNQLGEHWLNNTNKVSKELHRLETVLKHWTRYQSESAE 6771
Query: 179 LESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRD 221
L W+ + ++++E + + + EL+ + N L+ S++
Sbjct: 6772 LIHWLQSAKDRLEFWTQQS-VTVPQELEMVRDHLNAFLEFSKE 6813
Score = 39 (18.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 233 SDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVD-FTQFEYELDQL 279
SD+ + G + W L VTE+ +G ++ ++++E + L
Sbjct: 6952 SDKTDFAEQLGAMNKSWQILQGLVTEKIQLLEGLLESWSEYENNVQSL 6999
Score = 37 (18.1 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 244 QLEDRWNKLVSCVTEQNPSFD 264
Q EDR N+L+ T ++ + D
Sbjct: 7222 QQEDRTNELLKAATNKDIADD 7242
>UNIPROTKB|I3LTM2 [details] [associations]
symbol:SYNE2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003779 "actin binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] InterPro:IPR001589
InterPro:IPR001715 InterPro:IPR002017 InterPro:IPR012315
Pfam:PF00307 Pfam:PF00435 Pfam:PF10541 PROSITE:PS00019
PROSITE:PS00020 PROSITE:PS50021 PROSITE:PS51049 SMART:SM00033
GO:GO:0016021 Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150
SUPFAM:SSF47576 GeneTree:ENSGT00690000102001 EMBL:CU392842
EMBL:CU466960 EMBL:CU686778 Ensembl:ENSSSCT00000029685
Uniprot:I3LTM2
Length = 6866
Score = 134 (52.2 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 49/268 (18%), Positives = 114/268 (42%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+Q ++ FF L L+++ + + P + K + +Q+ + + +K+ ++
Sbjct: 4752 IQNHKLFFQKLVADMLLIQTYSNKMPPLLQKKETSWAEQVKEVKL-LEEKSHQCGIKLQS 4810
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
KW D+ L I+ +P++S + ++ + E S ++ + ++ R
Sbjct: 4811 LLQKWEEFDEKYASLEKDLEILISTLPSVSLVEETEERLVERISFYQQIKRNIDEKHARL 4870
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q ++ + + + CP LE + L L + I L +L T ++ L Y +D+
Sbjct: 4871 YQTLNEGKQLVASVSCPELEGQIAKLEEQWLALNKKIDHELHRLQTLLKHLLSYNRDSDQ 4930
Query: 179 LESWMDAHQNQI-----ESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFENA 226
L W+++ Q + +SLN S +N+ +++E +++ ++L
Sbjct: 4931 LTKWLESSQQTLNYWKEQSLNASQDLETIRSNINNFFEFSKELDEKSSLKTAVLSTGNQL 4990
Query: 227 MRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+ + L+ L Q E +W L++
Sbjct: 4991 LHLKEADTATLRASL-AQFEQKWTVLIT 5017
>UNIPROTKB|F1SRR5 [details] [associations]
symbol:SYNE2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090286 "cytoskeletal anchoring at nuclear membrane"
evidence=IEA] [GO:0051642 "centrosome localization" evidence=IEA]
[GO:0044429 "mitochondrial part" evidence=IEA] [GO:0034993
"SUN-KASH complex" evidence=IEA] [GO:0034504 "protein localization
to nucleus" evidence=IEA] [GO:0031981 "nuclear lumen" evidence=IEA]
[GO:0031965 "nuclear membrane" evidence=IEA] [GO:0031527
"filopodium membrane" evidence=IEA] [GO:0031258 "lamellipodium
membrane" evidence=IEA] [GO:0031022 "nuclear migration along
microfilament" evidence=IEA] [GO:0030335 "positive regulation of
cell migration" evidence=IEA] [GO:0030018 "Z disc" evidence=IEA]
[GO:0016529 "sarcoplasmic reticulum" evidence=IEA] [GO:0010761
"fibroblast migration" evidence=IEA] [GO:0007163 "establishment or
maintenance of cell polarity" evidence=IEA] [GO:0006998 "nuclear
envelope organization" evidence=IEA] [GO:0005925 "focal adhesion"
evidence=IEA] [GO:0003779 "actin binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] InterPro:IPR001589
InterPro:IPR001715 InterPro:IPR002017 InterPro:IPR012315
Pfam:PF00307 Pfam:PF00435 Pfam:PF10541 PROSITE:PS00019
PROSITE:PS00020 PROSITE:PS50021 PROSITE:PS51049 SMART:SM00033
GO:GO:0016021 GO:GO:0030018 GO:GO:0007163 GO:GO:0031965
GO:GO:0005925 GO:GO:0006998 Gene3D:1.10.418.10 InterPro:IPR018159
SMART:SM00150 SUPFAM:SSF47576 GO:GO:0030335 GO:GO:0016529
GO:GO:0031527 GO:GO:0031258 GO:GO:0010761 GO:GO:0034504
GeneTree:ENSGT00690000102001 GO:GO:0044429 GO:GO:0034993
GO:GO:0090286 GO:GO:0031022 OMA:EDWHKFI GO:GO:0031981 EMBL:CU392842
EMBL:CU466960 EMBL:CU686778 Ensembl:ENSSSCT00000005633
Uniprot:F1SRR5
Length = 6897
Score = 134 (52.2 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 49/268 (18%), Positives = 114/268 (42%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+Q ++ FF L L+++ + + P + K + +Q+ + + +K+ ++
Sbjct: 4782 IQNHKLFFQKLVADMLLIQTYSNKMPPLLQKKETSWAEQVKEVKL-LEEKSHQCGIKLQS 4840
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
KW D+ L I+ +P++S + ++ + E S ++ + ++ R
Sbjct: 4841 LLQKWEEFDEKYASLEKDLEILISTLPSVSLVEETEERLVERISFYQQIKRNIDEKHARL 4900
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q ++ + + + CP LE + L L + I L +L T ++ L Y +D+
Sbjct: 4901 YQTLNEGKQLVASVSCPELEGQIAKLEEQWLALNKKIDHELHRLQTLLKHLLSYNRDSDQ 4960
Query: 179 LESWMDAHQNQI-----ESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFENA 226
L W+++ Q + +SLN S +N+ +++E +++ ++L
Sbjct: 4961 LTKWLESSQQTLNYWKEQSLNASQDLETIRSNINNFFEFSKELDEKSSLKTAVLSTGNQL 5020
Query: 227 MRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+ + L+ L Q E +W L++
Sbjct: 5021 LHLKEADTATLRASL-AQFEQKWTVLIT 5047
>UNIPROTKB|F1Q3V9 [details] [associations]
symbol:SYNE2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003779 "actin binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR001589
InterPro:IPR001715 InterPro:IPR002017 InterPro:IPR012315
Pfam:PF00307 Pfam:PF00435 Pfam:PF10541 PROSITE:PS00019
PROSITE:PS00020 PROSITE:PS50021 PROSITE:PS51049 SMART:SM00033
GO:GO:0016021 Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150
SUPFAM:SSF47576 GeneTree:ENSGT00690000102001 OMA:EDWHKFI
EMBL:AAEX03005777 Ensembl:ENSCAFT00000025088 Uniprot:F1Q3V9
Length = 6932
Score = 133 (51.9 bits), Expect = 0.00012, P = 0.00012
Identities = 48/268 (17%), Positives = 113/268 (42%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+Q ++ FF L L+++ + + P+ K + ++ + +++ ++
Sbjct: 4763 IQNHKLFFQKLVADMLLIQTYSNKMLPSLLQKKETFWAEQIKEIKSLEERSHQCGIKLQS 4822
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
KW D+N L I+ +P++S + ++ + E S ++ + ++ R
Sbjct: 4823 LLQKWEEFDENYTSLEKDLEILVSTLPSVSLVEETEERLVERISFYQQIKRNIDEKHARL 4882
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q ++ + + + CP LE + L L + I L +L T ++ L Y +D+
Sbjct: 4883 YQTLNEGKQLVASVSCPELEGQITKLEEQWLALNKKIDHELHRLQTLLKHLLSYNRDSDQ 4942
Query: 179 LESWMDAHQNQI-----ESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFENA 226
L W+++ Q + +SLN S +N+ +++E +++ ++L
Sbjct: 4943 LTKWLESSQQTLNYWKEQSLNVSQDLDTIRSNINNFFEFSKELDDKSSLKTAVVSTGSQL 5002
Query: 227 MRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+ + L+ L Q E +W L++
Sbjct: 5003 LHLKEADTATLRASL-AQFEQKWTMLIT 5029
>UNIPROTKB|Q8WXH0 [details] [associations]
symbol:SYNE2 "Nesprin-2" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0006998
"nuclear envelope organization" evidence=IEA] [GO:0007163
"establishment or maintenance of cell polarity" evidence=IEA]
[GO:0010761 "fibroblast migration" evidence=IEA] [GO:0034504
"protein localization to nucleus" evidence=IEA] [GO:0005640
"nuclear outer membrane" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0033017
"sarcoplasmic reticulum membrane" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003779 "actin binding"
evidence=ISS] [GO:0034993 "SUN-KASH complex" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005635 "nuclear
envelope" evidence=IDA] [GO:0031981 "nuclear lumen" evidence=IDA]
[GO:0031258 "lamellipodium membrane" evidence=IDA] [GO:0031527
"filopodium membrane" evidence=IDA] [GO:0005925 "focal adhesion"
evidence=IDA] [GO:0016529 "sarcoplasmic reticulum" evidence=IDA]
[GO:0030018 "Z disc" evidence=IDA] [GO:0044429 "mitochondrial part"
evidence=IDA] [GO:0090286 "cytoskeletal anchoring at nuclear
membrane" evidence=IDA] [GO:0051642 "centrosome localization"
evidence=IMP] [GO:0007097 "nuclear migration" evidence=IMP]
[GO:0030335 "positive regulation of cell migration" evidence=ISS]
[GO:0031022 "nuclear migration along microfilament" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0031965 "nuclear membrane"
evidence=IDA] InterPro:IPR001589 InterPro:IPR001715
InterPro:IPR002017 InterPro:IPR012315 Pfam:PF00307 Pfam:PF00435
Pfam:PF10541 PROSITE:PS00019 PROSITE:PS00020 PROSITE:PS50021
PROSITE:PS51049 SMART:SM00033 GO:GO:0016021 Reactome:REACT_115566
GO:GO:0003779 GO:GO:0005654 GO:GO:0030018 GO:GO:0005856
GO:GO:0007163 GO:GO:0031965 GO:GO:0051642 GO:GO:0005925
GO:GO:0006998 Reactome:REACT_111183 eggNOG:COG5069
Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150 SUPFAM:SSF47576
GO:GO:0030335 GO:GO:0016529 GO:GO:0031527 GO:GO:0005640
GO:GO:0031258 GO:GO:0010761 GO:GO:0033017 GO:GO:0034504
GO:GO:0044429 GO:GO:0034993 Orphanet:98853 GO:GO:0090286 PDB:4DXS
PDB:4FI9 PDBsum:4DXS PDBsum:4FI9 GO:GO:0031022 EMBL:AF435010
EMBL:AF435011 EMBL:AY061757 EMBL:AY061758 EMBL:AY061759
EMBL:AY184204 EMBL:AF495911 EMBL:AL117404 EMBL:AL162832
EMBL:AL355094 EMBL:AL359235 EMBL:BC042134 EMBL:BC071873
EMBL:AK074055 EMBL:AK090430 EMBL:AK095241 EMBL:AB023228
EMBL:AL080133 IPI:IPI00239405 IPI:IPI00239406 IPI:IPI00239409
IPI:IPI00239410 IPI:IPI00239413 IPI:IPI00239414 IPI:IPI00412276
IPI:IPI00815967 IPI:IPI01009561 PIR:T12520 PIR:T17215
RefSeq:NP_055995.4 RefSeq:NP_878914.1 RefSeq:NP_878917.1
RefSeq:NP_878918.2 UniGene:Hs.525392 ProteinModelPortal:Q8WXH0
SMR:Q8WXH0 IntAct:Q8WXH0 STRING:Q8WXH0 PhosphoSite:Q8WXH0
DMDM:116242809 PaxDb:Q8WXH0 PRIDE:Q8WXH0 Ensembl:ENST00000341472
Ensembl:ENST00000344113 Ensembl:ENST00000356081
Ensembl:ENST00000357395 Ensembl:ENST00000358025
Ensembl:ENST00000394768 Ensembl:ENST00000441438
Ensembl:ENST00000458046 Ensembl:ENST00000555002
Ensembl:ENST00000555022 GeneID:23224 KEGG:hsa:23224 UCSC:uc001xgk.3
UCSC:uc001xgl.3 UCSC:uc001xgm.3 UCSC:uc001xgn.3 UCSC:uc001xgs.3
UCSC:uc001xgt.3 UCSC:uc010aqa.3 CTD:23224 GeneCards:GC14P064319
HGNC:HGNC:17084 HPA:HPA003435 MIM:608442 MIM:612999
neXtProt:NX_Q8WXH0 PharmGKB:PA128394613 OMA:EDWHKFI
GenomeRNAi:23224 NextBio:44823 ArrayExpress:Q8WXH0 Bgee:Q8WXH0
Genevestigator:Q8WXH0 GermOnline:ENSG00000054654 GO:GO:0031981
Uniprot:Q8WXH0
Length = 6885
Score = 132 (51.5 bits), Expect = 0.00015, P = 0.00015
Identities = 53/271 (19%), Positives = 123/271 (45%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPAT-RNKFSELHKQLHQQACDILDKAAIRSQQMA 59
++ ++ FF L L+++ + + P+ +N+ + +Q+ + IL++ + R M
Sbjct: 4776 IENHKVFFQKLVADMLLIQAYSAKILPSLLQNRETFWAEQVTE--VKILEEKS-RQCGMK 4832
Query: 60 LAA--SKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHL 115
L + KW D+N L I+ +P++S + ++ + E S ++ + ++
Sbjct: 4833 LQSLLQKWEEFDENYASLEKDLEILISTLPSVSLVEETEERLVERISFYQQIKRNIGGKH 4892
Query: 116 VRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTL 175
R Q ++ + + + CP LE + L+L + I L +L ++ L Y
Sbjct: 4893 ARLYQTLNEGKQLVASVSCPELEGQIAKLEEQWLSLNKKIDHELHRLQALLKHLLSYNRD 4952
Query: 176 ADRLESWMDAHQNQI-----ESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNF 223
+D+L W+++ Q+ + +SLN S +N+ +++E +++ ++L + +
Sbjct: 4953 SDQLTKWLESSQHTLNYWKEQSLNVSQDLDTIRSNINNFFEFSKEVDEKSSL-KTAVISI 5011
Query: 224 ENAMRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
N + +D R Q E +W L++
Sbjct: 5012 GNQLLHLKETDTATLRASLAQFEQKWTMLIT 5042
>UNIPROTKB|E7ENN3 [details] [associations]
symbol:SYNE1 "Nesprin-1" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0003779 "actin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IDA]
InterPro:IPR001589 InterPro:IPR001715 InterPro:IPR002017
InterPro:IPR012315 Pfam:PF00307 Pfam:PF00435 Pfam:PF10541
PROSITE:PS00019 PROSITE:PS00020 PROSITE:PS50021 PROSITE:PS51049
SMART:SM00033 GO:GO:0016021 GO:GO:0005737 GO:GO:0031965
Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150 SUPFAM:SSF47576
EMBL:AL078582 EMBL:AL049548 EMBL:AL136079 EMBL:AL589963
EMBL:AL591507 EMBL:AL450401 EMBL:AL138832 EMBL:AL357081
HGNC:HGNC:17089 ChiTaRS:SYNE1 IPI:IPI00748856
ProteinModelPortal:E7ENN3 Ensembl:ENST00000341594
ArrayExpress:E7ENN3 Bgee:E7ENN3 Uniprot:E7ENN3
Length = 8409
Score = 144 (55.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 50/268 (18%), Positives = 114/268 (42%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E+L + K ++ H +L QA +L +A R ++
Sbjct: 6239 LDKHKEYFQGLESHMILTETLFRKIISFAVQKETQFHTELMAQASAVLKRAHKRGVELEY 6298
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W LD++ E + L +V+ +P++ + ++ + + +L++ L + + +
Sbjct: 6299 ILETWSHLDEDQQELSRQLEVVESSIPSVGLVEENEDRLIDRITLYQHLKSSLNEYQPKL 6358
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLA-- 176
Q++ + + I C LE L+ +S L +L T ++W YQ+ +
Sbjct: 6359 YQVLDDGKRLLISISCSDLESQLNQLGECWLSNTNKMSKELHRLETILKHWTRYQSESAD 6418
Query: 177 ---------DRLESWMDAHQNQIESLNK-SNNMKSYWELKAQIEFYNTLLDRSRDNFENA 226
DRLE W + L +++ ++ E +++ ++L
Sbjct: 6419 LIHWLQSAKDRLEFWTQQSVTVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQL 6478
Query: 227 MRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+R+ V L+ +L +++ +W L++
Sbjct: 6479 LRLKKVDTATLRSEL-SRIDSQWTDLLT 6505
Score = 38 (18.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 233 SDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYE 275
SD+ + G + W L VTE+ +G ++ + EYE
Sbjct: 6599 SDKTDFAEQLGAMNKSWQILQGLVTEKIQLLEGLLE-SWSEYE 6640
Score = 37 (18.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 244 QLEDRWNKLVSCVTEQNPSFD 264
Q EDR N+L+ T ++ + D
Sbjct: 6869 QQEDRTNELLKAATNKDIADD 6889
>UNIPROTKB|E9PEL9 [details] [associations]
symbol:SYNE1 "Nesprin-1" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0003779 "actin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IDA]
InterPro:IPR001589 InterPro:IPR001715 InterPro:IPR002017
InterPro:IPR012315 Pfam:PF00307 Pfam:PF00435 Pfam:PF10541
PROSITE:PS00019 PROSITE:PS00020 PROSITE:PS50021 PROSITE:PS51049
SMART:SM00033 GO:GO:0016021 GO:GO:0005737 GO:GO:0031965
Gene3D:1.10.418.10 InterPro:IPR018159 SMART:SM00150 SUPFAM:SSF47576
EMBL:AL078582 EMBL:AL049548 EMBL:AL136079 EMBL:AL589963
EMBL:AL591507 EMBL:AL450401 EMBL:AL138832 EMBL:AL357081
IPI:IPI00647370 HGNC:HGNC:17089 ChiTaRS:SYNE1
ProteinModelPortal:E9PEL9 PRIDE:E9PEL9 Ensembl:ENST00000448038
ArrayExpress:E9PEL9 Bgee:E9PEL9 Uniprot:E9PEL9
Length = 8749
Score = 144 (55.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 50/268 (18%), Positives = 114/268 (42%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E+L + K ++ H +L QA +L +A R ++
Sbjct: 6556 LDKHKEYFQGLESHMILTETLFRKIISFAVQKETQFHTELMAQASAVLKRAHKRGVELEY 6615
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W LD++ E + L +V+ +P++ + ++ + + +L++ L + + +
Sbjct: 6616 ILETWSHLDEDQQELSRQLEVVESSIPSVGLVEENEDRLIDRITLYQHLKSSLNEYQPKL 6675
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLA-- 176
Q++ + + I C LE L+ +S L +L T ++W YQ+ +
Sbjct: 6676 YQVLDDGKRLLISISCSDLESQLNQLGECWLSNTNKMSKELHRLETILKHWTRYQSESAD 6735
Query: 177 ---------DRLESWMDAHQNQIESLNK-SNNMKSYWELKAQIEFYNTLLDRSRDNFENA 226
DRLE W + L +++ ++ E +++ ++L
Sbjct: 6736 LIHWLQSAKDRLEFWTQQSVTVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQL 6795
Query: 227 MRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+R+ V L+ +L +++ +W L++
Sbjct: 6796 LRLKKVDTATLRSEL-SRIDSQWTDLLT 6822
Score = 38 (18.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 233 SDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYE 275
SD+ + G + W L VTE+ +G ++ + EYE
Sbjct: 6916 SDKTDFAEQLGAMNKSWQILQGLVTEKIQLLEGLLE-SWSEYE 6957
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 244 QLEDRWNKLVSCVTEQNPSFD 264
Q EDR N+L+ T ++ + D
Sbjct: 7186 QQEDRTNELLKAATNKDIADD 7206
>UNIPROTKB|Q8NF91 [details] [associations]
symbol:SYNE1 "Nesprin-1" species:9606 "Homo sapiens"
[GO:0008219 "cell death" evidence=IEA] [GO:0005640 "nuclear outer
membrane" evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0005794 "Golgi
apparatus" evidence=IDA] [GO:0006997 "nucleus organization"
evidence=NAS] [GO:0007030 "Golgi organization" evidence=IDA]
[GO:0003779 "actin binding" evidence=IDA] [GO:0042692 "muscle cell
differentiation" evidence=IDA] [GO:0045211 "postsynaptic membrane"
evidence=IDA] [GO:0005521 "lamin binding" evidence=IPI] [GO:0016021
"integral to membrane" evidence=IDA] [GO:0034993 "SUN-KASH complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0090286 "cytoskeletal anchoring at nuclear membrane"
evidence=IDA] [GO:0090292 "nuclear matrix anchoring at nuclear
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=ISS]
[GO:0030017 "sarcomere" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0031965
"nuclear membrane" evidence=IDA] InterPro:IPR001589
InterPro:IPR001715 InterPro:IPR002017 InterPro:IPR012315
Pfam:PF00307 Pfam:PF00435 Pfam:PF10541 PROSITE:PS00019
PROSITE:PS00020 PROSITE:PS50021 PROSITE:PS51049 SMART:SM00033
EMBL:AY061756 GO:GO:0016021 GO:GO:0005794 Reactome:REACT_115566
GO:GO:0003779 GO:GO:0042803 GO:GO:0005856 GO:GO:0008219
GO:GO:0045211 GO:GO:0030017 GO:GO:0031965 GO:GO:0042692
Reactome:REACT_111183 eggNOG:COG5069 Gene3D:1.10.418.10
InterPro:IPR018159 SMART:SM00150 SUPFAM:SSF47576 GO:GO:0005640
GO:GO:0007030 EMBL:AL078582 GO:GO:0034993 Orphanet:98853
GO:GO:0090286 GO:GO:0090292 PDB:4DXR PDBsum:4DXR EMBL:AY061755
EMBL:AF495910 EMBL:AF535142 EMBL:AY184203 EMBL:AY184206
EMBL:AL049548 EMBL:AL136079 EMBL:AL589963 EMBL:AL591507
EMBL:AL450401 EMBL:AL138832 EMBL:AL357081 EMBL:AY135172
EMBL:AY183142 EMBL:AK056122 EMBL:AK094094 EMBL:AB051543
EMBL:AL713682 EMBL:AB033088 EMBL:AB018339 EMBL:AF444779
EMBL:AF043290 IPI:IPI00170463 IPI:IPI00247295 IPI:IPI00247296
IPI:IPI00247300 IPI:IPI00386444 IPI:IPI00396977 IPI:IPI00647370
IPI:IPI00940636 IPI:IPI00943590 RefSeq:NP_149062.1
RefSeq:NP_892006.3 UniGene:Hs.12967 ProteinModelPortal:Q8NF91
SMR:Q8NF91 IntAct:Q8NF91 MINT:MINT-6489007 STRING:Q8NF91
PhosphoSite:Q8NF91 DMDM:257051067 PaxDb:Q8NF91 PRIDE:Q8NF91
Ensembl:ENST00000265368 Ensembl:ENST00000356820
Ensembl:ENST00000367253 Ensembl:ENST00000367255
Ensembl:ENST00000413186 Ensembl:ENST00000423061 GeneID:23345
KEGG:hsa:23345 UCSC:uc003qos.4 UCSC:uc003qot.4 UCSC:uc003qow.3
UCSC:uc021zhb.1 CTD:23345 GeneCards:GC06M152485 HGNC:HGNC:17089
HPA:HPA019113 MIM:608441 MIM:610743 MIM:612998 neXtProt:NX_Q8NF91
Orphanet:1037 Orphanet:88644 PharmGKB:PA134975331
HOVERGEN:HBG066187 OMA:LMEARYS ChiTaRS:SYNE1 GenomeRNAi:23345
NextBio:45305 ArrayExpress:Q8NF91 Bgee:Q8NF91 Genevestigator:Q8NF91
GermOnline:ENSG00000131018 Uniprot:Q8NF91
Length = 8797
Score = 144 (55.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 50/268 (18%), Positives = 114/268 (42%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+ K++ +F L L E+L + K ++ H +L QA +L +A R ++
Sbjct: 6627 LDKHKEYFQGLESHMILTETLFRKIISFAVQKETQFHTELMAQASAVLKRAHKRGVELEY 6686
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
W LD++ E + L +V+ +P++ + ++ + + +L++ L + + +
Sbjct: 6687 ILETWSHLDEDQQELSRQLEVVESSIPSVGLVEENEDRLIDRITLYQHLKSSLNEYQPKL 6746
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLA-- 176
Q++ + + I C LE L+ +S L +L T ++W YQ+ +
Sbjct: 6747 YQVLDDGKRLLISISCSDLESQLNQLGECWLSNTNKMSKELHRLETILKHWTRYQSESAD 6806
Query: 177 ---------DRLESWMDAHQNQIESLNK-SNNMKSYWELKAQIEFYNTLLDRSRDNFENA 226
DRLE W + L +++ ++ E +++ ++L
Sbjct: 6807 LIHWLQSAKDRLEFWTQQSVTVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQL 6866
Query: 227 MRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+R+ V L+ +L +++ +W L++
Sbjct: 6867 LRLKKVDTATLRSEL-SRIDSQWTDLLT 6893
Score = 38 (18.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 233 SDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYE 275
SD+ + G + W L VTE+ +G ++ + EYE
Sbjct: 6987 SDKTDFAEQLGAMNKSWQILQGLVTEKIQLLEGLLE-SWSEYE 7028
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 244 QLEDRWNKLVSCVTEQNPSFD 264
Q EDR N+L+ T ++ + D
Sbjct: 7257 QQEDRTNELLKAATNKDIADD 7277
>UNIPROTKB|F1MF78 [details] [associations]
symbol:SYNE2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090286 "cytoskeletal anchoring at nuclear membrane"
evidence=IEA] [GO:0051642 "centrosome localization" evidence=IEA]
[GO:0044429 "mitochondrial part" evidence=IEA] [GO:0034993
"SUN-KASH complex" evidence=IEA] [GO:0034504 "protein localization
to nucleus" evidence=IEA] [GO:0031981 "nuclear lumen" evidence=IEA]
[GO:0031965 "nuclear membrane" evidence=IEA] [GO:0031527
"filopodium membrane" evidence=IEA] [GO:0031258 "lamellipodium
membrane" evidence=IEA] [GO:0031022 "nuclear migration along
microfilament" evidence=IEA] [GO:0030335 "positive regulation of
cell migration" evidence=IEA] [GO:0030018 "Z disc" evidence=IEA]
[GO:0016529 "sarcoplasmic reticulum" evidence=IEA] [GO:0010761
"fibroblast migration" evidence=IEA] [GO:0007163 "establishment or
maintenance of cell polarity" evidence=IEA] [GO:0006998 "nuclear
envelope organization" evidence=IEA] [GO:0005925 "focal adhesion"
evidence=IEA] [GO:0003779 "actin binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] InterPro:IPR001589
InterPro:IPR001715 InterPro:IPR002017 InterPro:IPR012315
Pfam:PF00307 Pfam:PF00435 Pfam:PF10541 PROSITE:PS00019
PROSITE:PS00020 PROSITE:PS50021 PROSITE:PS51049 SMART:SM00033
GO:GO:0016021 GO:GO:0030018 GO:GO:0007163 GO:GO:0031965
GO:GO:0005925 GO:GO:0006998 Gene3D:1.10.418.10 InterPro:IPR018159
SMART:SM00150 SUPFAM:SSF47576 GO:GO:0030335 GO:GO:0016529
GO:GO:0031527 GO:GO:0031258 GO:GO:0010761 GO:GO:0034504
GeneTree:ENSGT00690000102001 GO:GO:0044429 GO:GO:0034993
GO:GO:0090286 GO:GO:0031022 OMA:EDWHKFI GO:GO:0031981
EMBL:DAAA02029399 EMBL:DAAA02029390 EMBL:DAAA02029391
EMBL:DAAA02029392 EMBL:DAAA02029393 EMBL:DAAA02029394
EMBL:DAAA02029395 EMBL:DAAA02029396 EMBL:DAAA02029397
EMBL:DAAA02029398 IPI:IPI00697451 Ensembl:ENSBTAT00000029285
ArrayExpress:F1MF78 Uniprot:F1MF78
Length = 6843
Score = 142 (55.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 49/268 (18%), Positives = 115/268 (42%)
Query: 1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
+Q ++ FF L L+++ + + P+ K + ++ + +K+ ++
Sbjct: 4728 IQNHKLFFQKLVADMLLIQTYSNKMLPSLMQKKETFGAEQVKEVKLLEEKSHQYGIKLQS 4787
Query: 61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYE--SLFKALDEDMKVHLVRT 118
KW D+N L I+ +P++S + ++ + E S ++ + ++ R
Sbjct: 4788 LLQKWEEFDENYASLEKDLEILMSTLPSVSLVEETEERLVERISYYQQIKRNLDEKHARL 4847
Query: 119 TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADR 178
Q ++ + + ++CP LE + L+L + I L +L T ++ L Y +D+
Sbjct: 4848 YQTLNEGKQLVASVNCPELEGQIAKLEEQWLSLNKKIDHELHRLQTLLKHLLSYNRDSDQ 4907
Query: 179 LESWMDAHQNQI-----ESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNFENA 226
L W+++ Q + +SLN S +N+ +++E +++ ++L
Sbjct: 4908 LTKWLESSQQTLNYWKEQSLNVSQDLDTIRSNINNFFEFSKEVDEKSSLKTAVLSTGNQL 4967
Query: 227 MRVFPVSDEVLQRQLYGQLEDRWNKLVS 254
+ + L+ L Q E +W L++
Sbjct: 4968 LHLKEADTATLRASL-AQFEQKWTGLIT 4994
Score = 37 (18.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 236 VLQRQLYGQLEDRWNKLVSCVTEQNP 261
V++++L LE LVS QNP
Sbjct: 6703 VIEKKLKQLLEQVSQDLVSLQRSQNP 6728
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.130 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 279 279 0.00081 115 3 11 22 0.48 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 617 (66 KB)
Total size of DFA: 233 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.91u 0.08s 29.99t Elapsed: 00:00:22
Total cpu time: 29.92u 0.08s 30.00t Elapsed: 00:00:25
Start: Thu Aug 15 13:43:15 2013 End: Thu Aug 15 13:43:40 2013