RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11911
         (279 letters)



>d1hy5a_ a.24.11.1 (A:) YopE {Yersinia pestis [TaxId: 632]}
          Length = 120

 Score = 27.2 bits (60), Expect = 1.0
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 38  KQLHQQACDILDK--AAIRSQQMAL---AASKWISLDQNLHEEAAWLNIVQQRVPNLSAM 92
            +L  +A  IL+     I   Q      AAS +++   +L + A  +  + Q++  L ++
Sbjct: 60  GELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSL 119


>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
           {Cryptosporidium parvum [TaxId: 5807]}
          Length = 223

 Score = 26.0 bits (57), Expect = 4.3
 Identities = 9/103 (8%), Positives = 31/103 (30%), Gaps = 16/103 (15%)

Query: 105 KALDEDMKVHLVRT------TQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSG 158
           +    +  + ++          ++     +  +ID  +L   +E         E + +  
Sbjct: 50  EKSLNNEFIQVIEDIKRDFEESILLESEDVIRIIDD-NLLMYSE---------EGARAFC 99

Query: 159 LIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNKSNNMKS 201
           +        Y  E     ++ +    A +   ++L +  +   
Sbjct: 100 IKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLE 142


>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 124

 Score = 25.5 bits (55), Expect = 4.5
 Identities = 11/104 (10%), Positives = 32/104 (30%), Gaps = 17/104 (16%)

Query: 170 LEYQTLADRLESWMDAHQNQIESLNKSNNMKS-----------YWELKAQIEFYNTLLDR 218
           LE+   A    +WM+     ++ +   ++++               L        +++  
Sbjct: 8   LEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAI 67

Query: 219 SRD----NFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTE 258
             +         +R+   +          +L  +W+K+   V  
Sbjct: 68  QNEVEKVIQSYNIRISSSNPYSTVTM--DELRTKWDKVKQLVPI 109


>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD)
          {Aspergillus fumigatus [TaxId: 5085]}
          Length = 84

 Score = 23.8 bits (51), Expect = 9.1
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 20 SLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWL 79
          +L+ ++         ELH + H Q       AA+ +Q+ A  A+    L     ++A   
Sbjct: 14 ALQPYISQQI----MELHHKKHHQTYVNGLNAALEAQKKAAEATDVPKLVSV--QQAIKF 67

Query: 80 NIVQQ 84
          N    
Sbjct: 68 NGGGH 72


>d1swxa_ a.224.1.1 (A:) Glycolipid transfer protein, GLTP {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 202

 Score = 24.9 bits (54), Expect = 9.9
 Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 3/32 (9%)

Query: 103 LFKALDEDMKVHLVRTTQLVSVCRSITNLIDC 134
           L K L  D ++    T   +     +    DC
Sbjct: 1   LLKPLPADKQI---ETGPFLEAVSHLPPFFDC 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0367    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,002,859
Number of extensions: 43357
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 16
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.8 bits)