Query psy11918
Match_columns 285
No_of_seqs 123 out of 177
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 22:17:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxw_A Navrh, ION transport pr 89.3 0.24 8.1E-06 42.0 3.3 57 226-282 102-158 (229)
2 3rvy_A ION transport protein; 87.1 0.35 1.2E-05 42.3 3.0 55 228-282 119-173 (285)
3 2r9r_B Paddle chimera voltage 40.4 23 0.00077 34.4 4.1 45 234-278 320-364 (514)
4 3gd0_A Laminaripentaose-produc 37.3 15 0.0005 35.3 2.2 92 54-156 102-224 (367)
5 3beh_A MLL3241 protein; transm 35.4 20 0.00069 31.8 2.7 49 233-281 105-153 (355)
6 1tc3_C Protein (TC3 transposas 28.0 34 0.0012 20.6 2.1 28 145-172 10-37 (51)
7 3arc_L Photosystem II reaction 18.9 56 0.0019 22.1 1.8 26 248-273 8-33 (37)
8 3poj_A Mannan-binding lectin s 17.9 40 0.0014 25.0 1.0 14 129-142 14-27 (115)
9 3arc_O Photosystem II manganes 16.7 34 0.0012 31.3 0.4 18 105-122 205-222 (243)
10 3dwl_E Actin-related protein 2 15.3 20 0.00069 31.3 -1.3 17 136-152 156-172 (174)
No 1
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=89.34 E-value=0.24 Score=41.98 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhcchhHHHHHHHhHhchhhHHHHHHHHHHHHHHhhhhheeeeeecc
Q psy11918 226 NFFFAAHLLDVAVGFKTLRTILQSVTHNGKQLVLTVMLLTIIVYIYYLCIPQHCCDQ 282 (285)
Q Consensus 226 pFFFAfHLlDIi~R~~TL~NVIkSVT~NgkqLiLT~~L~lIvvYiYSIIaF~~f~DQ 282 (285)
..+=.+-.+-++...+.++.+++++.+..+++...+++.++++|+||++|...|.+.
T Consensus 102 r~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~ 158 (229)
T 4dxw_A 102 RLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGND 158 (229)
T ss_dssp TTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334445566677889999999999999999999999999999999999999888764
No 2
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=87.06 E-value=0.35 Score=42.26 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcchhHHHHHHHhHhchhhHHHHHHHHHHHHHHhhhhheeeeeecc
Q psy11918 228 FFAAHLLDVAVGFKTLRTILQSVTHNGKQLVLTVMLLTIIVYIYYLCIPQHCCDQ 282 (285)
Q Consensus 228 FFAfHLlDIi~R~~TL~NVIkSVT~NgkqLiLT~~L~lIvvYiYSIIaF~~f~DQ 282 (285)
+=.+-++-++..++.++.+++++.+..+++...+++.++++|+||++|+..|.+.
T Consensus 119 ~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~ 173 (285)
T 3rvy_A 119 LRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGER 173 (285)
T ss_dssp HGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3345566777889999999999999999999999999999999999998888653
No 3
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=40.41 E-value=23 Score=34.36 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHhcchhHHHHHHHhHhchhhHHHHHHHHHHHHHHhhhhheeee
Q psy11918 234 LDVAVGFKTLRTILQSVTHNGKQLVLTVMLLTIIVYIYYLCIPQH 278 (285)
Q Consensus 234 lDIi~R~~TL~NVIkSVT~NgkqLiLT~~L~lIvvYiYSIIaF~~ 278 (285)
+-++.+.+.|+.+.+++....+++.+.+++.++++++|+.++|..
T Consensus 320 lkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~ 364 (514)
T 2r9r_B 320 FKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFA 364 (514)
T ss_dssp GGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 344566788999999999999999888888888899999888754
No 4
>3gd0_A Laminaripentaose-producing beta-1,3-guluase (lphase); glycoside hydrolase, 3- glucnase; 1.62A {Streptomyces matensis} PDB: 3gd9_A*
Probab=37.32 E-value=15 Score=35.27 Aligned_cols=92 Identities=22% Similarity=0.278 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCcceE-EeeeecccCCCCeee---eeeccCcceeeeecc----------cccceeeeecccccccccCCC
Q psy11918 54 PALPPPPDEGGKPLE-MFNLDVTKDDTGQYK---MVPHESTPIKQTSTE----------EGVGGREMSQEGEGGEEHRAE 119 (285)
Q Consensus 54 ~~~~~~~~~~~~~~~-~f~l~~~~e~~g~~~---~~~~LkvPlviFkrE----------~KeiaR~Lefdg~~i~e~p~~ 119 (285)
|++.-|.|...+.+- -.++..+ +.|.+. .|-...+||-+=-.- .+.-+|.=-|+++ .+||
T Consensus 102 Ps~~NpsDPN~~~~~~f~EfT~n--~~gl~~N~S~VD~~~~Pl~l~l~~~~g~~q~vg~l~~~~~~~i~~~l--~~q~-- 175 (367)
T 3gd0_A 102 PAVQNPTDPNRDILFNWSEYTLN--DSGLWINSTQVDMFSAPYTVGVRRGDGTTLSTGKLRPGGYNGVFNAL--RGQS-- 175 (367)
T ss_dssp CCTTSTTCTTTTSCEEEEEEEEE--TTEEEEECCCSSEECSCEEEEEECTTSCEEEECCBCTTHHHHHHHHH--HTST--
T ss_pred CCCCCCCCCCCCceeeEEEEEec--CcceecccceeccccCceEEEEEcCCCceeeccCcCcchHHHHHHHH--Hhcc--
Confidence 444444444444433 3333333 555543 344456787773111 0111233344443 3554
Q ss_pred CCCCCccceeeccC-----------------CCCCCcccchHHHHHHHHHhccc
Q psy11918 120 SEMPDPAVTLADLL-----------------GSFPVNYWDKFAKKKVRQKYSET 156 (285)
Q Consensus 120 dd~~~~wdrlvi~~-----------------~SFP~~YWDKfvK~KV~~Ky~~~ 156 (285)
+.|++||+.. ..||.+|||-+|-+ |-+||...
T Consensus 176 ----~~w~~Lvv~~~~G~~lRilsP~~~~~~g~~~~~Y~d~YVd~-VW~kY~~~ 224 (367)
T 3gd0_A 176 ----GGWANLIQTRSDGTVLRALSPLYGVETGALPASVMDDYINR-VWNKYTGT 224 (367)
T ss_dssp ----TTGGGGEEECTTSCEEEEECHHHHHHHTSSCTTTTHHHHHH-HHHHHHHS
T ss_pred ----ccchhheEeCCCCceEEEECCccccccCccccchhHHHHHH-HHHhccCC
Confidence 3799999864 57999999999965 99999764
No 5
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=35.40 E-value=20 Score=31.79 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=38.6
Q ss_pred HHHHhcchhHHHHHHHhHhchhhHHHHHHHHHHHHHHhhhhheeeeeec
Q psy11918 233 LLDVAVGFKTLRTILQSVTHNGKQLVLTVMLLTIIVYIYYLCIPQHCCD 281 (285)
Q Consensus 233 LlDIi~R~~TL~NVIkSVT~NgkqLiLT~~L~lIvvYiYSIIaF~~f~D 281 (285)
++-++...+.++.+.+++..+..+++...++.+++++++|.+.+....+
T Consensus 105 ~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~ 153 (355)
T 3beh_A 105 LLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERD 153 (355)
T ss_dssp GSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455556677888888888888888888888889999999988776543
No 6
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.01 E-value=34 Score=20.57 Aligned_cols=28 Identities=4% Similarity=0.062 Sum_probs=22.0
Q ss_pred HHHHHHHHhccccChHHHHHhhCCCCCc
Q psy11918 145 AKKKVRQKYSETYDFDSISNLLGMEKTS 172 (285)
Q Consensus 145 vK~KV~~Ky~~~y~~e~I~elLGmd~t~ 172 (285)
-+++++..|.+-.....||+.||+..+.
T Consensus 10 ~~~~i~~~~~~g~s~~~IA~~lgis~~T 37 (51)
T 1tc3_C 10 ERAQLDVMKLLNVSLHEMSRKISRSRHC 37 (51)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHH
Confidence 4567777777778889999999998754
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=18.91 E-value=56 Score=22.06 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=20.2
Q ss_pred HhHhchhhHHHHHHHHHHHHHHhhhh
Q psy11918 248 QSVTHNGKQLVLTVMLLTIIVYIYYL 273 (285)
Q Consensus 248 kSVT~NgkqLiLT~~L~lIvvYiYSI 273 (285)
++|-.|+.+|-+..+|.+++--+||-
T Consensus 8 q~VELNRTSLy~GLLlifvlavlFss 33 (37)
T 3arc_L 8 QPVELNRTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceechhhHHHHHHHHHHHHHHhhh
Confidence 36788999999988888777666653
No 8
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=17.91 E-value=40 Score=25.03 Aligned_cols=14 Identities=14% Similarity=0.021 Sum_probs=11.3
Q ss_pred eeccCCCCCCcccc
Q psy11918 129 LADLLGSFPVNYWD 142 (285)
Q Consensus 129 lvi~~~SFP~~YWD 142 (285)
=+|++|.||.+|=.
T Consensus 14 G~i~SP~yP~~Yp~ 27 (115)
T 3poj_A 14 GTITSPDYPNPYPK 27 (115)
T ss_dssp EEEECTTTTSCCCT
T ss_pred EEEcCCCCCcCCcC
Confidence 46899999998843
No 9
>3arc_O Photosystem II manganese-stabilizing polypeptide; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_O* 2axt_O* 3bz2_O* 3prq_O* 3prr_O* 1s5l_O* 3kzi_O* 3a0b_O* 3a0h_O*
Probab=16.73 E-value=34 Score=31.35 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=15.8
Q ss_pred eeecccccccccCCCCCC
Q psy11918 105 EMSQEGEGGEEHRAESEM 122 (285)
Q Consensus 105 ~Lefdg~~i~e~p~~dd~ 122 (285)
-=|+-|.+.++||+|.|+
T Consensus 205 TGEiaGvF~s~QpSDTDl 222 (243)
T 3arc_O 205 TGEIAGTFESEQLSDDDM 222 (243)
T ss_dssp TTEEEEEEEEEEECCCTT
T ss_pred CceEEEEEEeeCCCCccc
Confidence 347889999999999998
No 10
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=15.33 E-value=20 Score=31.30 Aligned_cols=17 Identities=29% Similarity=0.819 Sum_probs=13.2
Q ss_pred CCCcccchHHHHHHHHH
Q psy11918 136 FPVNYWDKFAKKKVRQK 152 (285)
Q Consensus 136 FP~~YWDKfvK~KV~~K 152 (285)
=|+.+|=-|.|||-|+|
T Consensus 156 kpsKwWl~F~KRkFM~k 172 (174)
T 3dwl_E 156 HPSKWWTCFSKRRFMNK 172 (174)
T ss_dssp ---CTTSGGGGCCGGGC
T ss_pred CccHHHHHHHHHhhhcc
Confidence 48999999999998887
Done!