Query psy11918
Match_columns 285
No_of_seqs 123 out of 177
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 22:17:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11918.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11918hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1skye1 a.69.1.1 (E:357-470) F 29.5 7.3 0.00053 30.1 0.8 21 147-170 15-35 (114)
2 d1fx0b1 a.69.1.1 (B:378-485) F 26.7 8.7 0.00063 29.3 0.8 21 147-170 15-35 (108)
3 d2qqma3 b.23.1.1 (A:156-263) M 23.3 12 0.0009 25.3 1.0 12 130-141 2-13 (108)
4 d1nt0a2 b.23.1.1 (A:165-278) M 20.6 15 0.0011 25.6 1.0 11 130-140 12-22 (114)
5 d2jdid1 a.69.1.1 (D:358-475) F 19.2 21 0.0015 27.5 1.6 21 147-170 18-38 (118)
6 d1nzia1 b.23.1.1 (A:1-117) Com 19.1 17 0.0012 25.1 1.0 11 130-140 7-17 (117)
7 d1szba1 b.23.1.1 (A:3-123) Man 17.5 19 0.0014 25.0 1.0 11 130-140 12-22 (121)
8 d1gdta1 a.4.1.2 (A:141-183) ga 16.3 32 0.0024 22.2 1.8 27 146-172 8-34 (43)
9 d2cvea1 d.14.1.11 (A:2-124) Hy 15.5 2.4 0.00018 33.0 -4.8 18 14-31 85-105 (123)
10 d1l0oc_ a.4.13.2 (C:) SigmaF { 15.5 58 0.0042 21.0 3.0 27 145-171 20-46 (57)
No 1
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=29.46 E-value=7.3 Score=30.09 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=17.7
Q ss_pred HHHHHHhccccChHHHHHhhCCCC
Q psy11918 147 KKVRQKYSETYDFDSISNLLGMEK 170 (285)
Q Consensus 147 ~KV~~Ky~~~y~~e~I~elLGmd~ 170 (285)
+++++||++.. .|..+||||.
T Consensus 15 ~~~LqrYkeLq---DIIaiLG~dE 35 (114)
T d1skye1 15 QQTLERYKELQ---DIIAILGMDE 35 (114)
T ss_dssp HHHHHHHHHHH---HHHHHHCSTT
T ss_pred HHHHHHHHHHH---HHHHhcCchh
Confidence 57999999954 5899999986
No 2
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=26.74 E-value=8.7 Score=29.31 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=17.6
Q ss_pred HHHHHHhccccChHHHHHhhCCCC
Q psy11918 147 KKVRQKYSETYDFDSISNLLGMEK 170 (285)
Q Consensus 147 ~KV~~Ky~~~y~~e~I~elLGmd~ 170 (285)
+++++||++.. .|..+||||.
T Consensus 15 ~~iLqrYkeLq---dIIailG~dE 35 (108)
T d1fx0b1 15 KETLQRYKELQ---DIIAILGLDE 35 (108)
T ss_dssp HHHHHHHHHHH---HHHHHHCSTT
T ss_pred HHHHHHHHHHH---HHHHHhhhhh
Confidence 57999999854 5889999976
No 3
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.33 E-value=12 Score=25.27 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=9.7
Q ss_pred eccCCCCCCccc
Q psy11918 130 ADLLGSFPVNYW 141 (285)
Q Consensus 130 vi~~~SFP~~YW 141 (285)
+|.||.||.+|=
T Consensus 2 ~i~SP~yP~~Y~ 13 (108)
T d2qqma3 2 VIKSPGFPEKYP 13 (108)
T ss_dssp EEECTTTTSCCC
T ss_pred EEeCCCCCCCCC
Confidence 578999998873
No 4
>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.62 E-value=15 Score=25.62 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=9.9
Q ss_pred eccCCCCCCcc
Q psy11918 130 ADLLGSFPVNY 140 (285)
Q Consensus 130 vi~~~SFP~~Y 140 (285)
.|++|.||.+|
T Consensus 12 ~i~SP~yP~~Y 22 (114)
T d1nt0a2 12 FLSSPEYPQPY 22 (114)
T ss_dssp EEECTTTTSCC
T ss_pred EEECCCCCCCC
Confidence 78999999887
No 5
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.16 E-value=21 Score=27.50 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=17.6
Q ss_pred HHHHHHhccccChHHHHHhhCCCC
Q psy11918 147 KKVRQKYSETYDFDSISNLLGMEK 170 (285)
Q Consensus 147 ~KV~~Ky~~~y~~e~I~elLGmd~ 170 (285)
++++++|++.. .|..+||||.
T Consensus 18 ~~~LqrYkeLq---dIIaiLG~dE 38 (118)
T d2jdid1 18 QKILQDYKSLQ---DIIAILGMDE 38 (118)
T ss_dssp HHHHHHHHHHH---HHHHHHCGGG
T ss_pred HHHHHHhHHHH---HHHHHcChhh
Confidence 57899999854 5899999976
No 6
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.07 E-value=17 Score=25.11 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=9.4
Q ss_pred eccCCCCCCcc
Q psy11918 130 ADLLGSFPVNY 140 (285)
Q Consensus 130 vi~~~SFP~~Y 140 (285)
.|+||.||.+|
T Consensus 7 ~i~SP~yP~~Y 17 (117)
T d1nzia1 7 EILSPNYPQAY 17 (117)
T ss_dssp EEECTTTTSCC
T ss_pred EEeCCCCCCCC
Confidence 58899999887
No 7
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.51 E-value=19 Score=25.03 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=9.7
Q ss_pred eccCCCCCCcc
Q psy11918 130 ADLLGSFPVNY 140 (285)
Q Consensus 130 vi~~~SFP~~Y 140 (285)
.|+||.||.+|
T Consensus 12 ~i~SP~yP~~Y 22 (121)
T d1szba1 12 RLASPGFPGEY 22 (121)
T ss_dssp EEECTTTTSCC
T ss_pred EEeCCCCCCCC
Confidence 68999999987
No 8
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=16.33 E-value=32 Score=22.19 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=23.7
Q ss_pred HHHHHHHhccccChHHHHHhhCCCCCc
Q psy11918 146 KKKVRQKYSETYDFDSISNLLGMEKTS 172 (285)
Q Consensus 146 K~KV~~Ky~~~y~~e~I~elLGmd~t~ 172 (285)
+++|++-+.+-.|...||.-||+..++
T Consensus 8 ~~~V~~L~~~G~gat~IAk~lgI~R~S 34 (43)
T d1gdta1 8 RDAVLNMWQQGLGASHISKTMNIARST 34 (43)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHH
Confidence 468999999999999999999998764
No 9
>d2cvea1 d.14.1.11 (A:2-124) Hypothetical protein TTHA1053, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=15.54 E-value=2.4 Score=33.01 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=14.5
Q ss_pred EeehhhHHHHHHHHH---hhc
Q psy11918 14 LTVTVQRYFARILMS---LMR 31 (285)
Q Consensus 14 ~~~~~~~~~~~~~~~---~~~ 31 (285)
..|+|+|||-||+|| |+|
T Consensus 85 v~vvV~RyFGGi~LG~ggl~r 105 (123)
T d2cvea1 85 VAVLVVRYFGGVKLGAGGLVR 105 (123)
T ss_dssp EEEEEEEECCSSCCHHHHHHH
T ss_pred EEEEEEEeeCCeecCCchHHH
Confidence 357899999999987 555
No 10
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.53 E-value=58 Score=20.96 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=22.1
Q ss_pred HHHHHHHHhccccChHHHHHhhCCCCC
Q psy11918 145 AKKKVRQKYSETYDFDSISNLLGMEKT 171 (285)
Q Consensus 145 vK~KV~~Ky~~~y~~e~I~elLGmd~t 171 (285)
++++..++.|..=..+.||+.|||..+
T Consensus 20 ~~~~l~q~lgRePT~~EiA~~l~~~~e 46 (57)
T d1l0oc_ 20 AKDELSKTRGRAPTVTEIADHLGISPE 46 (57)
T ss_dssp HHHHHHHHHTSCCBHHHHHHHHTSCHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHH
Confidence 456777888888888899999999764
Done!