RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11918
         (285 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.1 bits (77), Expect = 0.064
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 116 HRAESEMPDPAVTLADLLGSFPVNYWD-KFAKKKVRQKYSETYDFDSISNLLG-MEK--- 170
           H    E         + +  F + + D +F ++K+R   +      SI N L  ++    
Sbjct: 480 HLKNIEH-------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 171 --TSFSSQEEEESSGIISFILRID 192
                  + E   + I+ F+ +I+
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIE 556



 Score = 31.4 bits (70), Expect = 0.43
 Identities = 43/368 (11%), Positives = 89/368 (24%), Gaps = 113/368 (30%)

Query: 7   NIQRFQVLTVTVQRYFARILMSLMRGPAIEEPTVEVKEVEKSHMRSYPALPPPPD----- 61
           N    + +   +Q+   +I  +                  ++ +R      P  +     
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 62  ---EGGKPLEMFNLD----VTKDDTGQYKMVPHESTPIKQTSTEEGVGGREMSQEGEGGE 114
              +  K    FNL     +T         +   +T     S +            E   
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--THISLDHHSMTLT---PDEVKS 305

Query: 115 ------EHRAESEMPDPAVT--------LADLLGSFPV--NYWDKFAKKKV--------- 149
                 + R + ++P   +T        +A+ +       + W      K+         
Sbjct: 306 LLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 150 -------RQKY-----------------------SETYDFDSISNLLGMEKTSFSSQEEE 179
                  R+ +                           D   + N L  + +    Q +E
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKE 423

Query: 180 ESSGI--ISFILR-------------IDWRYQV------WKAGVTITDNAFLYSLWYFTF 218
            +  I  I   L+             +D  Y +              D    Y   +   
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQ---YFYSHIGH 479

Query: 219 --SVMGNFNNF-FFAAHLLDVAVGFKTLRTILQSVTHNGKQLVLTVMLL-TIIVYIYYLC 274
               + +      F    LD        R + Q + H+      +  +L T+    +Y  
Sbjct: 480 HLKNIEHPERMTLFRMVFLD-------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK- 531

Query: 275 IPQHCCDQ 282
              + CD 
Sbjct: 532 --PYICDN 537


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 30.1 bits (67), Expect = 0.57
 Identities = 12/101 (11%), Positives = 29/101 (28%), Gaps = 32/101 (31%)

Query: 80  GQYKMVPHESTPIKQTSTEEGVGGREMSQEGEGGEEHRAESEMPDPAVTLADLLGSFPVN 139
            Q   +  E   I++   EE    +    +         E E  + A             
Sbjct: 75  AQADRLTQEPESIRKWR-EE----QRKRLQELDAASKVMEQEWREKAK-----------K 118

Query: 140 YWDKFAKKKVRQKYSETYDFDSISNLLGMEKTSFSSQEEEE 180
             +++ ++      SE            +EK   +++  ++
Sbjct: 119 DLEEWNQR-----QSEQ-----------VEKNKINNRIADK 143


>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
           transport, SGLT, ION TRAN membrane, sodium transport,
           symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
          Length = 530

 Score = 27.8 bits (62), Expect = 5.4
 Identities = 10/101 (9%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 187 FILRIDWRYQVWKAGVTITDNAFLYSLWYFTFSVMGNFNNFFFAAHLLDVAVGF------ 240
           F+L + W+    K  +     +  ++L+     +   F +      L  + V        
Sbjct: 413 FLLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLST 472

Query: 241 ---------KTLRTILQSVTHNGKQLVLTVMLLTIIVYIYY 272
                     ++ + +     +       +M++  ++Y  +
Sbjct: 473 SINDDDPKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLF 513


>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel,
           peptide synthesis, transition state analogue; HET: P2S
           ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB:
           1v4g_A* 2d32_A* 2d33_A*
          Length = 518

 Score = 27.5 bits (60), Expect = 5.8
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 10/93 (10%)

Query: 105 EMSQEGEGGEEH-----RAESEMPDPAVT-----LADLLGSFPVNYWDKFAKKKVRQKYS 154
           +      GGE +        +   +P +T     L  ++ +        FA+        
Sbjct: 418 QTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLRE 477

Query: 155 ETYDFDSISNLLGMEKTSFSSQEEEESSGIISF 187
           E  +     + +   + S   Q+E E++    F
Sbjct: 478 EPLEILREEDFVAEREASERRQQEMEAADTEPF 510


>3u24_A Putative lipoprotein; COG4805, DUF885, structural genomics,
           PSI-biology, midwest C structural genomics, MCSG, lipid
           BIND protein; 2.25A {Shewanella oneidensis}
          Length = 572

 Score = 27.6 bits (61), Expect = 6.0
 Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 40  VEVKEVEKSHMRSYPALPPPPDEGGKPLEMFN--LDVTKDDTGQYKMVPHESTPIKQTST 97
           + V+E  +          P P +           LD   +++ +  +  +    ++  + 
Sbjct: 348 LVVRETPEYMRGYASISAPGPYDKLGNTYYNVTPLDGMSNESAESYLREYNHWILQILNI 407

Query: 98  EEGVGGREM 106
            E + G   
Sbjct: 408 HEAIPGHYT 416


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,403,777
Number of extensions: 257584
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 10
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)