RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11918
         (285 letters)



>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma
           chain {Escherichia coli [TaxId: 562]}
          Length = 225

 Score = 26.7 bits (59), Expect = 2.7
 Identities = 9/91 (9%), Positives = 21/91 (23%), Gaps = 2/91 (2%)

Query: 187 FILRIDWRYQVWKAGVTITDNAFLYSLWYFTFSVMGNFNNFF-FAAHLLDVAV-GFKTLR 244
           F++    RY   +       +  L        S + +      F  H   +    +    
Sbjct: 20  FLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFVGHFFGMLTPHWMYEA 79

Query: 245 TILQSVTHNGKQLVLTVMLLTIIVYIYYLCI 275
            +   V             +  ++    L  
Sbjct: 80  WLPIEVAQKMAMFAGGASGVLCLIGGVLLLK 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,080,975
Number of extensions: 49463
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)