Query psy11919
Match_columns 453
No_of_seqs 203 out of 592
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 22:18:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3skp_A Serotransferrin; iron b 100.0 9.2E-76 3.1E-80 594.0 17.3 286 128-451 3-331 (342)
2 3tod_A Lactotransferrin; C-LOB 100.0 6.7E-76 2.3E-80 593.6 15.4 286 128-449 2-335 (335)
3 1iej_A Ovotransferrin; iron, m 100.0 9.9E-74 3.4E-78 577.8 18.2 294 128-445 5-331 (332)
4 3mc2_A Inhibitor of carbonic a 100.0 8.4E-74 2.9E-78 621.6 17.3 313 80-451 314-676 (687)
5 3v83_A Serotransferrin; iron b 100.0 4.6E-73 1.6E-77 617.5 13.8 317 80-451 327-687 (698)
6 1h45_A Lactoferrin; metal tran 100.0 3E-72 1E-76 567.3 14.6 299 127-446 4-333 (334)
7 3mc2_A Inhibitor of carbonic a 100.0 1.4E-70 4.7E-75 596.5 20.5 298 127-449 9-336 (687)
8 1cb6_A Protein (lactoferrin); 100.0 5.7E-71 2E-75 601.2 17.0 300 127-447 3-333 (691)
9 2d3i_A Ovotransferrin; aluminu 100.0 6.1E-70 2.1E-74 592.8 19.8 298 127-449 4-335 (686)
10 3v83_A Serotransferrin; iron b 100.0 4.4E-70 1.5E-74 594.1 16.4 301 127-449 22-349 (698)
11 1ryo_A Serotransferrin; iron t 100.0 1E-69 3.5E-74 547.5 15.0 298 128-445 4-326 (327)
12 1blf_A Lactoferrin; transferri 100.0 9.1E-69 3.1E-73 584.3 18.7 299 128-447 4-333 (689)
13 2d3i_A Ovotransferrin; aluminu 100.0 5E-69 1.7E-73 585.6 15.2 316 80-451 313-674 (686)
14 1blf_A Lactoferrin; transferri 100.0 1E-68 3.6E-73 583.8 15.5 316 81-451 314-678 (689)
15 1cb6_A Protein (lactoferrin); 100.0 1.6E-68 5.5E-73 582.0 11.5 317 81-451 314-680 (691)
16 3p7i_A PHND, subunit of alkylp 97.8 2.5E-05 8.6E-10 77.3 6.0 131 213-392 103-238 (321)
17 3n5l_A Binding protein compone 97.7 3.5E-05 1.2E-09 75.5 5.3 165 177-391 58-228 (310)
18 2j4u_S Lactotransferrin, lacto 97.6 2.1E-05 7.2E-10 57.4 1.8 40 127-174 3-45 (45)
19 3ksx_A Nitrate transport prote 90.2 1.2 4E-05 42.5 9.4 79 214-330 113-191 (324)
20 1us5_A Putative GLUR0 ligand b 89.6 1.2 4E-05 42.0 8.8 147 213-401 112-281 (314)
21 2vha_A Periplasmic binding tra 89.5 2.8 9.7E-05 38.4 11.2 123 213-392 111-234 (287)
22 4ddd_A Immunogenic protein; ss 89.4 1.2 4.1E-05 43.6 8.9 140 213-397 127-291 (327)
23 2qpq_A Protein BUG27; alpha/be 89.1 1.1 3.9E-05 43.7 8.5 82 306-392 165-254 (301)
24 2f5x_A BUGD; periplasmic bindi 87.1 1.4 4.6E-05 43.5 7.6 134 213-392 112-263 (312)
25 3del_B Arginine binding protei 87.1 5.3 0.00018 35.2 10.9 115 214-392 100-218 (242)
26 2dvz_A BUGE, putative exported 86.6 1.1 3.7E-05 44.2 6.6 136 213-392 116-267 (314)
27 4eq9_A ABC transporter substra 86.0 4.3 0.00015 35.7 9.7 71 306-392 151-221 (246)
28 3kzg_A Arginine 3RD transport 84.8 5 0.00017 35.4 9.6 119 213-392 91-216 (237)
29 3un6_A Hypothetical protein sa 84.8 2.4 8.4E-05 40.8 8.1 162 177-396 104-269 (341)
30 3ix1_A N-formyl-4-amino-5-amin 83.6 0.52 1.8E-05 44.4 2.6 74 177-257 56-129 (302)
31 2pvu_A ARTJ; basic amino acid 83.1 5.7 0.0002 36.1 9.4 120 213-392 128-248 (272)
32 2yln_A Putative ABC transporte 82.3 8.7 0.0003 35.5 10.5 118 213-392 145-263 (283)
33 3qax_A Probable ABC transporte 80.8 13 0.00045 33.0 10.8 72 306-392 168-239 (268)
34 2yjp_A Putative ABC transporte 80.7 6.4 0.00022 36.5 9.0 118 213-393 145-263 (291)
35 3tql_A Arginine-binding protei 78.4 12 0.0004 32.1 9.4 125 213-393 89-215 (227)
36 3h7m_A Sensor protein; histidi 74.5 22 0.00075 30.6 10.1 119 213-393 97-217 (234)
37 4i62_A Amino acid ABC transpor 73.6 15 0.0005 32.7 8.9 71 306-392 180-250 (269)
38 4f3p_A Glutamine-binding perip 73.0 19 0.00064 32.0 9.5 69 306-392 160-228 (249)
39 2y7i_A STM4351; arginine-bindi 72.7 23 0.00079 30.5 9.8 73 306-392 142-214 (229)
40 3uif_A Sulfonate ABC transport 69.9 3.3 0.00011 40.0 4.0 130 215-397 102-234 (348)
41 1wdn_A GLNBP, glutamine bindin 69.5 34 0.0012 29.1 10.1 119 213-393 89-209 (226)
42 2xxp_A CPS2A; replication, pep 69.4 3.7 0.00013 42.0 4.4 74 213-327 17-92 (398)
43 2iee_A ORF2, probable ABC tran 68.6 24 0.00083 32.0 9.4 118 213-392 111-232 (271)
44 3hv1_A Polar amino acid ABC up 67.8 5.5 0.00019 36.0 4.8 126 213-392 108-234 (268)
45 1lst_A Lysine, arginine, ornit 66.7 17 0.00058 31.7 7.7 77 306-393 143-219 (239)
46 2de3_A Dibenzothiophene desulf 64.2 4.5 0.00016 40.0 3.7 25 215-239 102-126 (365)
47 3qsl_A Putative exported prote 63.7 4.9 0.00017 37.7 3.7 138 214-396 118-261 (346)
48 4esw_A Pyrimidine biosynthesis 56.2 3.9 0.00013 39.5 1.6 59 177-239 60-118 (342)
49 3k4u_A Binding component of AB 54.8 95 0.0033 27.1 10.5 70 306-392 145-214 (245)
50 2v25_A Major cell-binding fact 53.6 17 0.00057 32.0 5.2 77 213-330 129-206 (259)
51 2x26_A Periplasmic aliphatic s 49.4 12 0.0004 34.9 3.6 79 213-330 86-165 (308)
52 2q88_A EHUB, putative ABC tran 48.0 80 0.0027 27.7 8.9 73 306-393 155-227 (257)
53 3kbr_A Cyclohexadienyl dehydra 36.3 2E+02 0.007 24.6 9.5 69 306-392 155-223 (239)
54 1xt8_A Putative amino-acid tra 27.0 33 0.0011 31.4 2.7 117 213-392 134-251 (292)
55 1ii5_A SLR1257 protein; membra 26.9 27 0.00092 30.1 2.0 116 213-392 95-212 (233)
56 1mqi_A Glutamate receptor 2; G 26.1 29 0.00098 31.0 2.1 27 213-239 110-136 (263)
57 2pyy_A Ionotropic glutamate re 20.8 47 0.0016 28.3 2.3 38 306-345 140-177 (228)
No 1
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E
Probab=100.00 E-value=9.2e-76 Score=594.05 Aligned_cols=286 Identities=27% Similarity=0.454 Sum_probs=250.4
Q ss_pred cccccccccCccCchh--hhh-hhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCccccccccccccc
Q psy11919 128 LTADWRQYLPVYSNLA--SCK-LRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAKSVWLPF 198 (453)
Q Consensus 128 ~tvrW~~~~CV~s~le--KC~-~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k~~l~~~ 198 (453)
++||| ||+|+.| ||+ |..++ .| .+.||++.|..+||+ ||++++|++++|+|++..+
T Consensus 3 ~~vrW----C~~s~~E~~KC~~~~~~~------~~--~v~Cv~a~s~~~Ci~~I~~g~AD~~~ld~~~vy~Ag~~~L--- 67 (342)
T 3skp_A 3 KPVKW----CALSHHERLKCDEWSVNS------VG--KIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKCGL--- 67 (342)
T ss_dssp CSEEE----EECSHHHHHHHHHHHHHT------TT--SEEEEECSSHHHHHHHHHHTSCCBEEECHHHHHHHHHTTC---
T ss_pred ceEEE----eeCCHHHHHHHHHHHHhc------CC--CeEEEeCCCHHHHHHHHHcCCCCEEEECchheEEeccCCc---
Confidence 57999 9999977 996 54433 22 456899999999996 9999999999999997743
Q ss_pred ccccccccCCCC-------c-EEEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccc
Q psy11919 199 QCRNLEKYGNEK-------D-LLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGV 270 (453)
Q Consensus 199 ~pi~~E~y~~~~-------~-~~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kav 270 (453)
+||++|.|..+. . +|+||||||++++.+|+||||||+||||+++++||++||+.|+++. ..| ++
T Consensus 68 ~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkK~s~~~tl~dLrGKksCHtg~g~tAGW~iP~g~L~~~~----~~c----~~ 139 (342)
T 3skp_A 68 VPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKI----NHC----RF 139 (342)
T ss_dssp EEEEEEECSCCTTGGGSCCCCEEEEEEEETTCSSCCGGGCTTSEEEESCTTCTTTTHHHHHHSGGGC----STT----CG
T ss_pred EEEEEEEeecCccccCCCcceEEEEEEEEcCCCCCCHHHcCCCCccCCCCCCccchhhHHHHHhhcc----CCC----CH
Confidence 789999997632 3 4999999998888999999999999999999999999999998763 235 67
Q ss_pred cccCCCCCccCCCCcccCCCCccccccccCC----------cccc-ccchhhhhhcCCCcEEEEechhhHHH--------
Q psy11919 271 EQFFSGGSCVPGLEEKEKSESPSLEKICHNI----------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEA-------- 331 (453)
Q Consensus 271 s~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~----------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~-------- 331 (453)
++||+ +||+||+.. +++||+||.|+ ++|| |+||||||+|| ||||||+|+||.+.
T Consensus 140 s~FFs-~sC~PG~~~-----~~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GAfrCL~eg-GDVAFvkh~tV~~~~~g~~~~~ 212 (342)
T 3skp_A 140 DEFFS-EGCAPGSKK-----DSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVPQNTGGKNPDP 212 (342)
T ss_dssp GGSSS-EEECTTSCT-----TSGGGTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHHT-CSEEEEETTHHHHTSTTSSCST
T ss_pred HHhhh-hcccCCCCC-----ccchhhhcCCCCCCCCCCCCCCcCcCCcchheeeccC-CcEEEEechhHHhhcCCCCchh
Confidence 99999 999999943 68999999983 3799 99999999999 99999999999985
Q ss_pred HhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC----CCcccccCC
Q psy11919 332 IEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK----PEIFKLFGS 407 (453)
Q Consensus 332 ~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~----~~~F~LF~S 407 (453)
|+. +++++||+||||||+|+||++|++|||+++|||+||+|++.. +.|+++|.++|++||++ .+.|+||+|
T Consensus 213 wa~-~~~~~dyeLLC~dGtr~pv~~~~~C~la~vP~~aVv~r~~~~----~~i~~~L~~~q~~fg~~~~~~~~~F~lF~s 287 (342)
T 3skp_A 213 WAK-NLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKE----ACVHKILRQQQHLFGSNVTDCSGNFCLFRS 287 (342)
T ss_dssp TTT-TCCGGGEEEECTTSCEEEGGGGGGSCSEEECCCEEEECGGGH----HHHHHHHHHHHHHHSTTCSCCSSSCCTTCC
T ss_pred hhc-cCChhhEEEECCCCCcCCCCCCccceEEEccCCeEEecCchH----HHHHHHHHHHHHHhCcCCCCCCCCccccCC
Confidence 433 567899999999999999999999999999999999999743 58999999999999953 268999999
Q ss_pred CCCCCCccccCCCCccccCCCC-ChHHH--HHHHHHHHhhcccCCCC
Q psy11919 408 FMGKPDVLFLNPATGVESLPDQ-ATDVE--TNFSNNMLSKVMYCSGK 451 (453)
Q Consensus 408 ~~~~kNLLF~DsT~~L~~v~~~-~~~~y--~~y~~~~~~~i~~C~~~ 451 (453)
+. +||||+|+|++|+.+++. +|+.| .+|++ +++++++|+.+
T Consensus 288 ~~--kdLLFkDst~~L~~~~~~~~~~~~Lg~~y~~-~~~~l~~c~~~ 331 (342)
T 3skp_A 288 ET--KDLLFRDDTVCLAKLHDRNTYEKYLGEEYVK-AVGNLRKCSTS 331 (342)
T ss_dssp SS--SCSSSCTTCCEEEECSTTCSHHHHSCHHHHH-HHHHHHHHSCC
T ss_pred CC--CCcceecCccCcccCCCCCCHHHHhhHHHHH-HHHHhhcCCcc
Confidence 75 999999999999999866 99999 58999 88899999765
No 2
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ...
Probab=100.00 E-value=6.7e-76 Score=593.64 Aligned_cols=286 Identities=26% Similarity=0.446 Sum_probs=247.5
Q ss_pred cccccccccCccCchh--hhhhhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCcccccccccccccc
Q psy11919 128 LTADWRQYLPVYSNLA--SCKLRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAKSVWLPFQ 199 (453)
Q Consensus 128 ~tvrW~~~~CV~s~le--KC~~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k~~l~~~~ 199 (453)
++||| ||+|+.| ||+.++... .| .+.||.+.|..+||+ ||++++|++++|+|++..+ +
T Consensus 2 ~~vrW----C~~s~~E~~KC~~~~~~~-----~~--~i~Cv~~~s~~dCi~~I~~g~AD~~~ld~g~vy~Ag~~~L---~ 67 (335)
T 3tod_A 2 TRVVW----CAVGPEEQKKCQQWSQQS-----GQ--NVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGL---V 67 (335)
T ss_dssp CCEEE----EEEHHHHHHHHHHHHHHT-----TT--SEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHHTTC---E
T ss_pred CceEE----ccCCHHHHHHHHHHHHhC-----CC--CeEEEecCCHHHHHHHHHcCCCCEEEECchheEEeccCCc---e
Confidence 57999 9999877 997444321 23 345799999999996 9999999999999987543 7
Q ss_pred cccccccC----C-C------Cc-EEEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCcc
Q psy11919 200 CRNLEKYG----N-E------KD-LLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYY 267 (453)
Q Consensus 200 pi~~E~y~----~-~------~~-~~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~ 267 (453)
||++|.|. + + .+ +|+||||||+++..+|+||||||+||||+|+++||++||+.|.++. .+|
T Consensus 68 Pv~~E~y~~~~~~~~~~~~~~~~~YyaVAVVkKs~s~~tl~dLrGKksCHtg~g~tAGW~iP~g~L~~~~----~~c--- 140 (335)
T 3tod_A 68 PVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQT----GSC--- 140 (335)
T ss_dssp EEEEEEECCSSCCCSCGGGSCCCCEEEEEEEETTCTTCCGGGCTTCEEEESCTTCTTTTHHHHHHHHHHH----TCS---
T ss_pred eEEEEeecccccccccccCCccceEEEEEEEEcCCCCCCHHHcCCCCccCCCCCCccchhhhhhhhhhcC----CCC---
Confidence 89999997 3 1 23 4999999996555789999999999999999999999999998762 246
Q ss_pred ccccccCCCCCccCCCCcccCCCCccccccccCC------------cccc-ccchhhhhhcCCCcEEEEechhhHHH---
Q psy11919 268 KGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNI------------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEA--- 331 (453)
Q Consensus 268 kavs~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~------------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~--- 331 (453)
++++||+ +||+||++. +++||+||.|+ ++|| |.||||||+||+||||||+|+||.+.
T Consensus 141 -~~s~FFs-~sC~PG~~~-----~~~LC~lC~g~~~~~~kC~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tV~~~~~g 213 (335)
T 3tod_A 141 -AFDEFFS-QSCAPGADP-----KSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNG 213 (335)
T ss_dssp -CGGGSSS-EEECTTSCT-----TSGGGTTCCCSTTSTTTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHHTSTT
T ss_pred -CHHHhhh-hhccCCCCC-----CcchhhhcCCCCCccCcCCCCCCCcCcCCCcceeeeccCCCcEEEEechhHHhhcCC
Confidence 4899999 999999975 58999999984 2799 99999999999999999999999985
Q ss_pred -----HhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC----CCcc
Q psy11919 332 -----IEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK----PEIF 402 (453)
Q Consensus 332 -----~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~----~~~F 402 (453)
|+. +++++||+||||||+|+||++|++|||+++|||+||+|++. .+.|+++|+++|++||++ .+.|
T Consensus 214 ~~~~~wa~-~~~~~dyeLLC~dG~r~pv~~~~~C~la~vP~~aVv~r~~~----~~~v~~~L~~~q~~fg~~~~~~~~~F 288 (335)
T 3tod_A 214 ESTADWAK-NLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDR----AAHVEQVLLHQQALFGKNGKNCPDKF 288 (335)
T ss_dssp SCCSTTTT-TCCGGGEEEECTTSCEEEGGGGGGSCSEEECCCEEEECHHH----HHHHHHHHHHHHHHHSTTCTTTTTTC
T ss_pred CCchhhhc-cCChhheEEECCCCCcCCCCCCCcceEEEccCCEEEECCCc----HHHHHHHHHHHHHHhCcCCCCCCCCc
Confidence 333 56789999999999999999999999999999999999863 357999999999999953 2689
Q ss_pred cccCCCCCCCCccccCCCCccccCCCC-ChHHHH--HHHHHHHhhcccCC
Q psy11919 403 KLFGSFMGKPDVLFLNPATGVESLPDQ-ATDVET--NFSNNMLSKVMYCS 449 (453)
Q Consensus 403 ~LF~S~~~~kNLLF~DsT~~L~~v~~~-~~~~y~--~y~~~~~~~i~~C~ 449 (453)
+||+|+. +||||+|+|++|+.+++. +|+.|+ +|++ +++++++|+
T Consensus 289 ~lF~s~~--kdLLFkD~t~~L~~~~~~~~~~~yLg~~y~~-ai~~l~~c~ 335 (335)
T 3tod_A 289 CLFKSET--KNLLFNDNTECLAKLGGRPTYEEYLGTEYVT-AIANLKKCS 335 (335)
T ss_dssp CTTCSTT--SCCSSCTTEEEEECCTTCCCHHHHHCHHHHH-HHHHHHTTC
T ss_pred cccCCCC--CcccccccccCcccCCCCCCHHHHhhHHHHH-HHHHHhcCC
Confidence 9999975 999999999999999866 999997 8999 888999994
No 3
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=100.00 E-value=9.9e-74 Score=577.78 Aligned_cols=294 Identities=28% Similarity=0.433 Sum_probs=258.4
Q ss_pred cccccccccCccCchh--hhhhhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCcccccc-ccccccc
Q psy11919 128 LTADWRQYLPVYSNLA--SCKLRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAA-KSVWLPF 198 (453)
Q Consensus 128 ~tvrW~~~~CV~s~le--KC~~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~-k~~l~~~ 198 (453)
++||| ||+++.| ||+.++... +++.+ .+.|++++|..+||+ ||+++++++++|+|+ +...+
T Consensus 5 ~~vrw----Cv~s~~E~~KC~~l~~~~--~~~~~--~veCv~~~s~~~Ci~aI~~g~aD~~~ld~~~~~~A~~~~~~l-- 74 (332)
T 1iej_A 5 SVIRW----CTISSPEEKKCNNLRDLT--QQERI--SLTCVQKATYLDCIKAIANNEADAITLDGGQVFEAGLAPYKL-- 74 (332)
T ss_dssp EEEEE----EESSHHHHHHHHHHHHHT--TTSSE--EEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHTSTTTCC--
T ss_pred CcEEE----EECCHHHHHHHHHHHHHH--HhcCC--ceEEEEcCCHHHHHHHHHcCCCcEEEeCccceeEecccccCC--
Confidence 46999 9999876 996444433 34544 455799999999996 999999999999998 44443
Q ss_pred ccccccccCCC---CcE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCC---Ccccccc
Q psy11919 199 QCRNLEKYGNE---KDL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVC---PYYKGVE 271 (453)
Q Consensus 199 ~pi~~E~y~~~---~~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C---~~~kavs 271 (453)
+||++|.|+.+ ... |+||||||++++ +|+||||||+||||+++++||++|++.|+++|+|++.+| +..++++
T Consensus 75 ~pi~~e~~~~~~~~~~~Y~aVaVVkkdS~i-sl~dLkGKksChtg~~stsGw~~Pi~~L~~~g~i~~~~~~~~~~~~a~s 153 (332)
T 1iej_A 75 KPIAAEVYEHTEGSTTSYYAVAVVKKGTEF-TVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVA 153 (332)
T ss_dssp EEEEEEEEECSSSEESEEEEEEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTSSCCCCGGGCCHHHHHH
T ss_pred EEEEEEEecCCCCCCCceEEEEEEeCCCCC-CHHHHCCCceEcCCCCCccchHHHHHHHHHcCCCCccccccchHHHHHH
Confidence 88999999752 234 999999999987 899999999999999999999999999999999999888 4678999
Q ss_pred ccCCCCCccCCCCcccCCCCccccccccC--------Ccccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCce
Q psy11919 272 QFFSGGSCVPGLEEKEKSESPSLEKICHN--------ITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEI 342 (453)
Q Consensus 272 ~FFs~~SC~PG~~~~~~n~~~nLC~lC~g--------~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy 342 (453)
+||+ +||+||+++. ++||+||.| +++|| |+||||||+||+||||||+|++|.+.|.. ..+||
T Consensus 154 ~fF~-~sC~pG~~~~-----~~LC~lC~g~~~~~C~~~~~y~Gy~GA~rCL~eg~GDVAFvk~~~v~~~~~~---~~~dy 224 (332)
T 1iej_A 154 KFFS-ASCVPGATIE-----QKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPD---QKDEY 224 (332)
T ss_dssp HHSS-EEECTTCCSC-----GGGGTTCCSCTTTTTSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCTT---SGGGE
T ss_pred Hhcc-ccccCCCCcc-----cchhhhhcCCCcccCCCCcccCCchHHHHHHHhCCCcEEEEeccchhhhccc---ccccc
Confidence 9999 9999999864 899999999 46899 99999999999999999999999997643 57999
Q ss_pred EEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCC-CcccccCCCCCC----CCcccc
Q psy11919 343 EFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKP-EIFKLFGSFMGK----PDVLFL 417 (453)
Q Consensus 343 ~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~~-~~F~LF~S~~~~----kNLLF~ 417 (453)
+||||||+|+||++|++|||+++|+|+||+|++... ++|+++|+++|++||++. +.|+||+|+.++ +||||+
T Consensus 225 ~lLC~dg~r~pv~~~~~C~la~vP~~aVv~r~d~~~---~~i~~~l~~~~~~fg~~~~~~F~lF~s~~~~~~~~kdllF~ 301 (332)
T 1iej_A 225 ELLCLDGSRQPVDNYKTCNWARVAAHAVVARDDNKV---EDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFK 301 (332)
T ss_dssp EEECTTSCEEEGGGTTTSCSEEEECCEEEECSSTTH---HHHHHHHHHHHHHHSTTCSSSCCSSCCCSSSCGGGSSCSSC
T ss_pred eEECCCCCccCcCcCccceeccCCCceEEEcCCCCH---HHHHHHHHHHHHHhcCCCCCCeeeccCCCCCCCCCCCCcEe
Confidence 999999999999999999999999999999998874 369999999999999554 489999999876 999999
Q ss_pred CCCCccccCCCC-ChHHHH--HHHHHHHhhc
Q psy11919 418 NPATGVESLPDQ-ATDVET--NFSNNMLSKV 445 (453)
Q Consensus 418 DsT~~L~~v~~~-~~~~y~--~y~~~~~~~i 445 (453)
|+|++|+.+++. +|+.|+ +|+. ++.++
T Consensus 302 D~t~~l~~~~~~~~~~~~lg~~y~~-a~~~l 331 (332)
T 1iej_A 302 DSAIMLKRVPSLMDSQLYLGFEYYS-AIQSM 331 (332)
T ss_dssp TTEEEEEECCTTCCHHHHHCHHHHH-HHHHH
T ss_pred cCccCceeCCCCCCHHHHcCHHHHH-HHHhc
Confidence 999999999976 999996 6988 55444
No 4
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=100.00 E-value=8.4e-74 Score=621.61 Aligned_cols=313 Identities=24% Similarity=0.410 Sum_probs=267.5
Q ss_pred cccceEeccCcchhhhhcceecccccccCCcCCCCCcccccccCCCcccccccccccCccCchh--hhhhhhhhccccCC
Q psy11919 80 SSKTLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLA--SCKLRSATHYQVDL 157 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~tvrW~~~~CV~s~le--KC~~~~a~~~~~~i 157 (453)
.++...|+|.+|+++++. |+-+ + .+ .++||| ||+|+.| ||+.|+.. +
T Consensus 314 ~~~~~~yLg~~Y~~~i~~-l~~~------~--~~-------------~~~vrW----Cv~s~~E~~KC~~~~~~-----~ 362 (687)
T 3mc2_A 314 KIDISLYLGYEFLSAFRN-LKRG------L--ED-------------SQRVKW----CAVGQQERTKCDQWSAV-----S 362 (687)
T ss_dssp TCCHHHHHHHHHHHHHHH-HCC-------------------------CCCEEE----EEESSHHHHHHHHHHHH-----T
T ss_pred CCCHHHhhCHHHHHHHHh-cccc------C--CC-------------CCceEE----ccCCHHHHHHHHHHHhh-----c
Confidence 345678999999999987 5532 1 12 468999 9999977 99744442 2
Q ss_pred CccceeeeccCCChhhhhh------hceeccCCCcccccccccccccccccccccCCC--------------Cc-EEEEE
Q psy11919 158 TDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNE--------------KD-LLAVA 216 (453)
Q Consensus 158 ~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k~~l~~~~pi~~E~y~~~--------------~~-~~aVA 216 (453)
.| .+.||++.|.+|||+ ||++++|++++|+|+++.| +|||+|.|+.. .+ +|+||
T Consensus 363 ~p--~~~Cv~~~s~~dCi~~I~~g~ADa~tldgg~vy~Ag~~~L---~Pv~~E~y~~~~~~~~~~~~c~~~~~~~YyaVA 437 (687)
T 3mc2_A 363 GG--ALACATEETPEDCIAATMKGEADAMSLDGGFAYVAGHCGL---VPVLAENYLSTHSSGRLGSKCVNAPLEGYYVVA 437 (687)
T ss_dssp TT--SEEEEEESSHHHHHHHHHHTSSCBEEECHHHHHHHHHTTC---EEEEECCBCCCSCSSCCSTTSTTCCCCCEEEEE
T ss_pred CC--ceEEEeCCCHHHHHHHHhCCCCCEEEECchHheehhhcCc---EEEeeecccccccccccccccccCCCceEEEEE
Confidence 34 356799999999996 9999999999999998433 88999999741 23 49999
Q ss_pred EEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCccccc
Q psy11919 217 VVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEK 296 (453)
Q Consensus 217 VVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~nLC~ 296 (453)
||||++...+|+||||||+||||+|++|||++||++|+++ ..+| ++++||+ +||+||++. +++||+
T Consensus 438 VVkks~~~~~~~~LrGkkSCHtg~g~tAGWniP~g~L~~~----~~~c----~~~~FFs-~sC~PGa~~-----~~~LC~ 503 (687)
T 3mc2_A 438 VVKKSDVGITWKSLQGKKSCHTAVGTSEGWNVPMGLIYDQ----TGSC----KFDAFFS-RSCAPGSDP-----DSPLCA 503 (687)
T ss_dssp EEESSCSCCCTTCCTTSCEEESCTTCCCCCCTHHHHHHTT----SCCS----CHHHHSS-SEECTTSCT-----TSTTBS
T ss_pred EEecCCCCCCHhHcCCCCCCCCCCCCccchhhhHhhhhcC----CCCC----CHHHhcc-ccccCCCCC-----CcchHH
Confidence 9999776799999999999999999999999999999876 2457 5799999 999999976 489999
Q ss_pred cccCC------------cccc-ccchhhhhhcCCCcEEEEechhhHHH--------HhcCCCCCCceEEecCCCCCccCC
Q psy11919 297 ICHNI------------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEA--------IEEGIFKVDEIEFLCSKGGRAPVS 355 (453)
Q Consensus 297 lC~g~------------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~--------~~~~~~~~~dy~LLCpdGsr~pi~ 355 (453)
||.|+ ++|| |.||||||+|| ||||||+|+||.+. |+. +++.+||+||||||+|+||+
T Consensus 504 lC~g~~~~~~kC~~~~~e~Y~Gy~GAfrCL~eg-GDVAFVkh~tV~en~~g~~~~~wa~-~l~~~dyeLLC~dgtr~pv~ 581 (687)
T 3mc2_A 504 LCVGGNNPAHMCAANNAEGYHGSSGALRCLVEK-GDVAFMKHPTVLQNTDGKNPEPWAK-GLKHEDFELLCLDGTRKPVT 581 (687)
T ss_dssp SCCCCSSTTCTTCSSSSSTTCHHHHHHHHHHHT-CSEEEECTTCSTTTSTTSCCSGGGS-SCCTTTEEEECSSSCEEETT
T ss_pred hcCCCCCCCCcCCCCCCCcCcCCchhHHhhccC-CeEEEEeCCcHHhhcCCCCchhhhh-ccCccceEEECCCCCcCCCC
Confidence 99874 2799 99999999999 99999999999873 655 67789999999999999999
Q ss_pred CCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC---CCcccccCCCCCCCCccccCCCCccccCCCC-Ch
Q psy11919 356 KAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK---PEIFKLFGSFMGKPDVLFLNPATGVESLPDQ-AT 431 (453)
Q Consensus 356 ~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~---~~~F~LF~S~~~~kNLLF~DsT~~L~~v~~~-~~ 431 (453)
+|++|||+++|+|+||+|++.. +.|+++|.++|++||++ .+.|+||+|. ++||||+|+|++|+.+++. +|
T Consensus 582 ~~~~C~La~vP~haVv~r~~~~----~~i~~~L~~~q~~fg~~~~~~~~F~lF~S~--~kdLLFkDst~~L~~~~~~~~~ 655 (687)
T 3mc2_A 582 EAQSCHLARVPNRAVFSRKDKA----DFVRRILFNQQELFGRNGFEYMMFQMFESS--AKDLLFSDDTECLSNLQDKTTY 655 (687)
T ss_dssp CTTTSCSEEECCCEEEECSSSH----HHHHHHHHHHHHHHSTTCCSSSSCCSSCCS--SSCSSSCTTBCCCEECTTCCSH
T ss_pred CCCcceeEeccCCeEEECCCcH----HHHHHHHHHHHHHhCcCCCCCCCceeccCC--CCCcccccccccceeCCCCCCH
Confidence 9999999999999999999854 47999999999999953 3589999994 5999999999999999866 99
Q ss_pred HHHH--HHHHHHHhhcccCCCC
Q psy11919 432 DVET--NFSNNMLSKVMYCSGK 451 (453)
Q Consensus 432 ~~y~--~y~~~~~~~i~~C~~~ 451 (453)
++|+ +|+. ++.++++|+.+
T Consensus 656 ~~~LG~~y~~-a~~~l~~c~~~ 676 (687)
T 3mc2_A 656 KTYLGPQYLT-LMDNFRQCLSS 676 (687)
T ss_dssp HHHHHHHHHH-HTTSSGGGCCC
T ss_pred HHHhhHHHHH-HHHHhhhcCch
Confidence 9995 8999 88899999654
No 5
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=100.00 E-value=4.6e-73 Score=617.55 Aligned_cols=317 Identities=26% Similarity=0.410 Sum_probs=269.6
Q ss_pred cccceEeccCcchhhhhcceecccccccCCcC--CCCCcccccccCCCcccccccccccCccCchh--hhhhhhhhcccc
Q psy11919 80 SSKTLNYKAGGCIKSFKLGLVAGFSSEVSSKV--YGLRPTIYRSILPKVVLTADWRQYLPVYSNLA--SCKLRSATHYQV 155 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~p~~~~tvrW~~~~CV~s~le--KC~~~~a~~~~~ 155 (453)
.++...|+|.+|+.+++. |+-+. .|.. .+ .++||| ||+|+.| ||+.|+..
T Consensus 327 ~~~~~~yLg~~Y~~~i~~-l~~~~----~~~~~~~~-------------~~~vrw----C~~s~~E~~KC~~~~~~---- 380 (698)
T 3v83_A 327 RMDAKMYLGYEYVTAIRN-LREGT----CPEAPTDE-------------CKPVKW----CALSHHERLKCDEWSVN---- 380 (698)
T ss_dssp TCCHHHHHCHHHHHHHHH-HHTTC----CCCCHHHH-------------CCCEEE----EEEHHHHHHHHHHHHHH----
T ss_pred CCCHHHhccHHHHHHHHh-hhccC----CccccCCC-------------CCceEE----eeCCHHHHHHHHHHHHh----
Confidence 346678999999999987 66443 1111 11 468999 9999877 99644432
Q ss_pred CCCccceeeeccCCChhhhhh------hceeccCCCcccccccccccccccccccccCCC-------CcE-EEEEEEEcC
Q psy11919 156 DLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNE-------KDL-LAVAVVKKD 221 (453)
Q Consensus 156 ~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k~~l~~~~pi~~E~y~~~-------~~~-~aVAVVkk~ 221 (453)
..| .+.||++.|.++||+ ||++++|++++|+|++..+ +||++|.|+.+ .+. |+||||||+
T Consensus 381 -~~~--~i~Cv~a~s~~~Ci~~I~~g~AD~~~ld~~~vy~Ag~~~L---~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkks 454 (698)
T 3v83_A 381 -SVG--KIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKCGL---VPVLAENYNKSDNCEDTPEAGYFAVAVVKKS 454 (698)
T ss_dssp -TTT--SEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHHTTC---EEEEEEECSCCTTGGGCCCCCEEEEEEEETT
T ss_pred -cCC--CeEEEeCCCHHHHHHHHHcCCCCEEEECcHHHhhhhhcCc---eEEEEEeeccccccccCCCCceEEEEEEecC
Confidence 234 456899999999996 9999999999999998433 88999999764 234 999999997
Q ss_pred CCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCccccccccCC
Q psy11919 222 SKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNI 301 (453)
Q Consensus 222 s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~ 301 (453)
++..+|+||||||+||||++++|||++||++|+++ ..+| ++++||+ +||+||++. +++||+||.|+
T Consensus 455 ~s~~t~~dLrGKksCHtg~~~tAGw~iP~g~L~~~----~~~c----~~~~FFs-~sC~PG~~~-----~~~LC~lC~g~ 520 (698)
T 3v83_A 455 ASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNK----INHC----RFDEFFS-EGCAPGSKK-----DSSLCKLCMGS 520 (698)
T ss_dssp SCCCCSSTTTTCEEEESCTTCTTTTHHHHHHHHHH----HCSS----CHHHHSS-EEECTTSCT-----TSGGGTTCCCC
T ss_pred CCCCCHHHhCCCCccCCCCCCccccchhheehhcC----CCCC----CHHHhhh-hhccCCCCC-----CcchHHhcCCC
Confidence 65689999999999999999999999999999986 1357 5799999 999999975 48999999984
Q ss_pred ----------cccc-ccchhhhhhcCCCcEEEEechhhHHH--------HhcCCCCCCceEEecCCCCCccCCCCcCCcc
Q psy11919 302 ----------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEA--------IEEGIFKVDEIEFLCSKGGRAPVSKAADCNL 362 (453)
Q Consensus 302 ----------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~--------~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl 362 (453)
++|| |.||||||+|| ||||||||+||.+. |+. +++.+||+||||||+|+||++|++|||
T Consensus 521 ~~~kC~~~~~e~Y~Gy~GAfrCL~eg-GDVAFvkh~tv~~n~~g~~~~~wa~-~~~~~dyeLLC~dG~r~~v~~~~~C~L 598 (698)
T 3v83_A 521 GLNLCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVPQNTGGKNPDPWAK-NLNEKDYELLCLDGTRKPVEEYANCHL 598 (698)
T ss_dssp GGGTTCSSTTSTTCHHHHHHHHHHHT-CSEEEEETTHHHHTSTTSSCSTTTT-TCCGGGEEECCTTSCCCBGGGGGGSCS
T ss_pred CCCcCCCCCcCcCcCCcchHhhhccC-CeEEEEeCCcHHhhcCCCCchhhhh-ccCcccEEEECCCCCcCCccCCCccce
Confidence 2799 99999999999 99999999999884 554 567899999999999999999999999
Q ss_pred cccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC----CCcccccCCCCCCCCccccCCCCccccCCCC-ChHHHH--
Q psy11919 363 GVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK----PEIFKLFGSFMGKPDVLFLNPATGVESLPDQ-ATDVET-- 435 (453)
Q Consensus 363 ~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~----~~~F~LF~S~~~~kNLLF~DsT~~L~~v~~~-~~~~y~-- 435 (453)
+++|+|+||+|++.. +.|+++|.++|++||++ .+.|+||+|. ++||||+|+|++|+.+++. +|+.|+
T Consensus 599 a~vP~~aVv~r~~~~----~~v~~~L~~~q~~fg~~~~~~~~~F~lF~s~--~kdLlFkDst~~L~~~~~~~~~~~~LG~ 672 (698)
T 3v83_A 599 ARAPNHAVVTRKDKE----ACVHKILRQQQHLFGSNVTDCSGNFCLFRSE--TKDLLFRDDTVCLAKLHDRNTYEKYLGE 672 (698)
T ss_dssp EEECCCEEEECGGGH----HHHHHHHHHHHHHHSTTCCCSSSSCCTTCCT--TSCCSSCTTCCEEEECTTCCSHHHHHCH
T ss_pred eeccCceEEecCchH----HHHHHHHHHHHHHhCCCCcccCCCceeccCC--CCCcccccccccceeCCCCCCHHHHhhH
Confidence 999999999999753 47999999999999952 3689999994 5999999999999999866 999995
Q ss_pred HHHHHHHhhcccCCCC
Q psy11919 436 NFSNNMLSKVMYCSGK 451 (453)
Q Consensus 436 ~y~~~~~~~i~~C~~~ 451 (453)
+|++ +++++++|+.+
T Consensus 673 ~y~~-~~~~l~~c~~~ 687 (698)
T 3v83_A 673 EYVK-AVGNLRKCSTS 687 (698)
T ss_dssp HHHH-HHHTTSTTCCC
T ss_pred HHHH-HHHHhhcCCCc
Confidence 8999 88899999765
No 6
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=100.00 E-value=3e-72 Score=567.29 Aligned_cols=299 Identities=30% Similarity=0.516 Sum_probs=250.7
Q ss_pred ccccccccccCccCchh--hhh-hhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCccccccc-cccc
Q psy11919 127 VLTADWRQYLPVYSNLA--SCK-LRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAK-SVWL 196 (453)
Q Consensus 127 ~~tvrW~~~~CV~s~le--KC~-~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k-~~l~ 196 (453)
.++||| ||+++.| ||+ |+.++ .... .+ .+.|++++|..+||+ ||++.++++++|+|++ ...+
T Consensus 4 ~~~vrw----Cv~s~~e~~KC~~l~~~~-~~~~-~~--~vecv~~~~~~~ci~aI~~g~AD~~~ld~~~~~~A~~~~~~l 75 (334)
T 1h45_A 4 RRSVQW----CAVSQPEATKCFQWQRNM-RRVR-GP--PVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKL 75 (334)
T ss_dssp TTSEEE----EESSHHHHHHHHHHHHHH-HHTT-CC--CEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCE
T ss_pred CCcEEE----EECCHHHHHHHHHHHHHH-hhcC-CC--ceEEEEcCCHHHHHHHHHcCCCCEEEeCccceEEeecCccCC
Confidence 368999 9999866 996 54444 2111 22 445799999999996 9999999999999984 3333
Q ss_pred ccccccccccCCC---CcE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCC--Cccccc
Q psy11919 197 PFQCRNLEKYGNE---KDL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVC--PYYKGV 270 (453)
Q Consensus 197 ~~~pi~~E~y~~~---~~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C--~~~kav 270 (453)
+||++|.|+.+ ... |+||||||++++ +|+||||||+||||+++++||++|++.|+ +.|++.+| +..+++
T Consensus 76 --~pi~~e~~~~~~~~~~~Y~avaVVkk~s~i-sl~dLkGKksch~~~~stsGw~iP~~~L~--~~i~~~~~~~~~~~a~ 150 (334)
T 1h45_A 76 --RPVAAEVYGTERQPRTHYYAVAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLR--PFLDWTGPPEPIEAAV 150 (334)
T ss_dssp --EEEEEEEEECSSSEESEEEEEEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHG--GGSCCCCTTSCHHHHH
T ss_pred --EEEEEEeecCCCCCCCceEEEEEEeCCCCC-CHHHHCCCceecCCCCCccchhHHHHHHH--hhcCcCCCcchhhHHH
Confidence 78999999763 234 999999999986 99999999999999999999999999999 68888777 468999
Q ss_pred cccCCCCCccCCCCcccCCCCccccccccCC----------cccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCC
Q psy11919 271 EQFFSGGSCVPGLEEKEKSESPSLEKICHNI----------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKV 339 (453)
Q Consensus 271 s~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~----------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~ 339 (453)
++||+ +||+||++.. .|++||+||.|+ ++|| |+||||||+||+||||||+|++|.+.|.. +.+.
T Consensus 151 ~~fFs-~sC~pg~~~~---~y~~LC~lC~g~~~~~C~~s~~~~y~G~~GA~rCL~eg~gDVAFv~~~~v~~~~~~-~~~~ 225 (334)
T 1h45_A 151 ARFFS-ASCVPGADKG---QFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIGESTVFEDLSD-EAER 225 (334)
T ss_dssp HHHSS-EEECTTSCTT---TCGGGTTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCCC-HHHH
T ss_pred HHhcc-ccccCCCCcc---chhhHHHhcCCCCCCccCCCCCccccCchHHHHHHHhCCCcEEEEecchhhhhhcc-cCCc
Confidence 99999 9999999765 469999999992 3899 99999999999999999999999987754 3446
Q ss_pred CceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-CCcccccCCCCCCCCccccC
Q psy11919 340 DEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK-PEIFKLFGSFMGKPDVLFLN 418 (453)
Q Consensus 340 ~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~-~~~F~LF~S~~~~kNLLF~D 418 (453)
+||+||||||+|+||++|++|||+++|+|+||+|++... +++|+++|+++|++||++ .+.|+||+|+.+++||||+|
T Consensus 226 ~dy~lLC~dg~~~pv~~~~~C~la~vP~~avv~r~~~~~--~~~i~~~l~~~~~~fg~~~~~~f~lF~s~~~~k~LlFkD 303 (334)
T 1h45_A 226 DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGK--EDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 303 (334)
T ss_dssp TTEEEEETTTEEEEGGGGGGSCSEEEECCEEEEESSSCC--HHHHHHHHHHHHHHHSTTTCSSCCTTCCCTTCCCSSSCT
T ss_pred cceEEECCCCCccCcCCCccceecccCCceEEEcCCCCh--HHHHHHHHHHHHHHhccCCCcccCccCCCccCCCCcccC
Confidence 999999999999999999999999999999999998764 467999999999999954 46899999998889999999
Q ss_pred CCCccccCCCC-ChHHHH--HHHHHHHhhcc
Q psy11919 419 PATGVESLPDQ-ATDVET--NFSNNMLSKVM 446 (453)
Q Consensus 419 sT~~L~~v~~~-~~~~y~--~y~~~~~~~i~ 446 (453)
+|++|+.+++. +|+.|+ +|+. ++++++
T Consensus 304 ~t~~l~~~~~~~~~~~yLg~~y~~-~~~~l~ 333 (334)
T 1h45_A 304 SAIGFSRVPPRIDSGLYLGSGYFT-AIQNLR 333 (334)
T ss_dssp TCCEEEECCTTCCHHHHHTC-----------
T ss_pred CCcceeeCCCCCCHHHHhCHHHHH-HHHHhc
Confidence 99999999864 999997 5888 555554
No 7
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=100.00 E-value=1.4e-70 Score=596.45 Aligned_cols=298 Identities=30% Similarity=0.452 Sum_probs=256.6
Q ss_pred ccccccccccCccCchh--hhh-hhhhhccc-cCCCccceeeeccCCChhhhhh------hceeccCCCcccccc-cccc
Q psy11919 127 VLTADWRQYLPVYSNLA--SCK-LRSATHYQ-VDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAA-KSVW 195 (453)
Q Consensus 127 ~~tvrW~~~~CV~s~le--KC~-~~~a~~~~-~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~-k~~l 195 (453)
.+|||| ||+|+.| ||+ |..++... ..+.|. +.||++.|+.+||+ ||++++|++++|.|+ +.+.
T Consensus 9 ~~~vrw----Ct~S~~E~~KC~~l~~~~~~~~~~~~p~--~~Cv~~~d~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~ 82 (687)
T 3mc2_A 9 EKTIRW----CVVSDHEATKCSSFRDNMKKVLPAGGPA--VTCVRKMSHPECIRDISANKVDAVTVDGALVAEADLPHHS 82 (687)
T ss_dssp CCCEEE----EECSSHHHHHHHHHHHHHHHHCSSSSCC--EEEEECSCHHHHHHHHHTTSCCBEEECTTGGGSCSSTTCC
T ss_pred CCcEEE----EECCHHHHHHHHHHHHHHHHhccCCCCc--eEEEeCCCHHHHHHHHHCCCCCEEEEChHHHHhhhcccCC
Confidence 579999 9999977 995 66655543 124453 45799999999996 999999999999997 4443
Q ss_pred cccccccccccCCCC---cE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCcccccc
Q psy11919 196 LPFQCRNLEKYGNEK---DL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVE 271 (453)
Q Consensus 196 ~~~~pi~~E~y~~~~---~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs 271 (453)
+ +||++|.|+.++ +. |+||||||++++ +|+||||||+||||+++++||++||++|+ + +|+..++++
T Consensus 83 L--~Pi~~E~y~~~~~~~~~YyaVAVVkK~s~i-~l~dLrGKksCHtg~g~taGw~iPi~~L~-----~--~~~~~~avs 152 (687)
T 3mc2_A 83 L--KPIMAEYYGSKDDPKTHYYVVAMAKKGTGF-QLNQLRGKKSCHTGLGWSAGWYVPLSTLL-----P--SGSRETAAA 152 (687)
T ss_dssp E--EEEEEEEEECSSSEECEEEEEEEEETTTCC-CTTTTTTCEEEESCTTCTTTTHHHHHHTC-----C--TTCCSSSHH
T ss_pred c--eEEEEEeeecCCCCCceeEEEEEEECCCCC-CHHHcCCCCcccCCCCCccchhhhHHHhc-----C--CCchhHHHH
Confidence 3 899999998754 55 999999999986 69999999999999999999999999996 2 578899999
Q ss_pred ccCCCCCccCCCCcccCCCCccccccccC----------Ccccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCC
Q psy11919 272 QFFSGGSCVPGLEEKEKSESPSLEKICHN----------ITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVD 340 (453)
Q Consensus 272 ~FFs~~SC~PG~~~~~~n~~~nLC~lC~g----------~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~ 340 (453)
+||+ +||+||++.. .|++||+||.| .++|| |+||||||+||+||||||+|+||.+.... ..+.+
T Consensus 153 ~FFs-~SCvPG~~~~---~y~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~GDVAFvkh~tV~e~~~~-~~~~~ 227 (687)
T 3mc2_A 153 TFFS-SSCVPCADGK---MFPSLCQLCAGKGTDKCACSSREPYFGSWGALKCLQDGTADVSFVKHLTVFEAMPT-KADRD 227 (687)
T ss_dssp HHSS-EEECTTSCTT---TCGGGBSSCCCCTTSTTCSSTTSSSCHHHHTTHHHHTTSCSEEEEEHHHHTTSCSS-TTTTT
T ss_pred Hhhh-hcccCCcCCC---cchHHHhhcCCCCCCcCCCCCCCcCcCccchhhhhhhCCCcEEEEEchhhhhhcCC-CCCcc
Confidence 9999 9999999865 46899999999 24899 99999999999999999999999985433 34579
Q ss_pred ceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcC-CCCcccccCCCCCCCCccccCC
Q psy11919 341 EIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNP 419 (453)
Q Consensus 341 dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~-~~~~F~LF~S~~~~kNLLF~Ds 419 (453)
||+||||||+|+||++|++|||+++|||+||+|++... .+.|+++|..+|++||+ ..+.|+||+|+.+ +||||+|+
T Consensus 228 dyeLLCpDGtr~pv~~~~~C~la~~P~~aVv~r~~~~~--~~~i~~~L~~~q~~fg~~~~~~f~lF~s~~g-kdLlF~Ds 304 (687)
T 3mc2_A 228 QYELLCMDNTRRPVEEYEQCYLARVPSHVVVARSVDGK--EDSIQELLRVAQEHFGKDKSSPFQLFGSPHG-EDLLFTDA 304 (687)
T ss_dssp TEEEECTTSCEEETTCGGGSCSEEEECCEEEEESSSSC--HHHHHHHHHHHHHHSSSSSSSSCCSSCCSSS-SSCSSCTT
T ss_pred cEEEEcCCCCcCCCCCCCCCceecccCceEEEccCcch--HHHHHHHHHHHHHHhccCCCccceeecCCCC-ceeeeccc
Confidence 99999999999999999999999999999999997542 36899999999999995 4668999999986 99999999
Q ss_pred CCccccCCCC-ChHHHH--HHHHHHHhhcccCC
Q psy11919 420 ATGVESLPDQ-ATDVET--NFSNNMLSKVMYCS 449 (453)
Q Consensus 420 T~~L~~v~~~-~~~~y~--~y~~~~~~~i~~C~ 449 (453)
|++|+.+|.. +++.|+ +|++ .+..++.|+
T Consensus 305 t~~L~~ip~~~~~~~yLg~~Y~~-~i~~l~~~~ 336 (687)
T 3mc2_A 305 AHGLLRVPRKIDISLYLGYEFLS-AFRNLKRGL 336 (687)
T ss_dssp CCEEEECCTTCCHHHHHHHHHHH-HHHHHCC--
T ss_pred ccccccCCCCCCHHHhhCHHHHH-HHHhccccC
Confidence 9999999876 899997 6888 666666663
No 8
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=100.00 E-value=5.7e-71 Score=601.20 Aligned_cols=300 Identities=30% Similarity=0.500 Sum_probs=261.1
Q ss_pred ccccccccccCccCchh--hhh-hhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCcccccc-ccccc
Q psy11919 127 VLTADWRQYLPVYSNLA--SCK-LRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAA-KSVWL 196 (453)
Q Consensus 127 ~~tvrW~~~~CV~s~le--KC~-~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~-k~~l~ 196 (453)
.++||| ||+|+.| ||+ |..++ ..++.| .+.||++.|+.+||+ ||++++|++++|+|+ +...+
T Consensus 3 ~~~vrw----Cv~s~~E~~KC~~l~~~~--~~~~~~--~i~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~L 74 (691)
T 1cb6_A 3 RRSVQW----CAVSQPEATKCFQWQRNM--RKVRGP--PVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKL 74 (691)
T ss_dssp CSSEEE----EESSHHHHHHHHHHHHHH--HHTTCC--CEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCE
T ss_pred CCeEEE----EEcCHHHHHHHHHHHHHH--hhccCC--ceEEEeCCCHHHHHHHHhcCCCCEEEEChHHhheeccccCCC
Confidence 468999 9999877 996 55554 335555 345799999999996 999999999999998 44433
Q ss_pred ccccccccccCCC---CcE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCC--Cccccc
Q psy11919 197 PFQCRNLEKYGNE---KDL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVC--PYYKGV 270 (453)
Q Consensus 197 ~~~pi~~E~y~~~---~~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C--~~~kav 270 (453)
+||++|.|+.+ .+. |+||||||++++ +|+||||||+||||+++++||++||++|+++ |++.+| +..+++
T Consensus 75 --~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~~-~l~dLkGkksCHtg~g~taGw~iPi~~L~~~--i~~~~~~~~~~~a~ 149 (691)
T 1cb6_A 75 --RPVAAEVYGTERQPRTHYYAVAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLRPF--LNWTGPPEPIEAAV 149 (691)
T ss_dssp --EEEEEEEEEETTEEESEEEEEEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHSGGG--SCCCCTTSCHHHHH
T ss_pred --EEEEEEeecCCCCCCCceEEEEEEECCCCC-CHHHhCCCCcccCCCCCccchhhHHHHHHHh--ccccCCcchHHHHH
Confidence 88999999753 244 999999999985 8999999999999999999999999999987 777777 578999
Q ss_pred cccCCCCCccCCCCcccCCCCccccccccCC----------cccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCC
Q psy11919 271 EQFFSGGSCVPGLEEKEKSESPSLEKICHNI----------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKV 339 (453)
Q Consensus 271 s~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~----------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~ 339 (453)
++||+ +||+||++.. .|+|||+||.|+ ++|| |+||||||+||+||||||+|++|.+.|.. +.+.
T Consensus 150 s~FFs-~SC~PG~~~~---~y~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tv~~~~~~-~~~~ 224 (691)
T 1cb6_A 150 ARFFS-ASCVPGADKG---QFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSD-EAER 224 (691)
T ss_dssp HHHSS-EEECTTCCTT---TCGGGGTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETHHHHHHCCS-TTTG
T ss_pred HHhcC-cccCCCCCcc---cchhhhHhhcCCCcCccCCCCcccCcCcHHHHHHHHhcCCcEEEEecceecccccc-cCCc
Confidence 99999 9999999765 368999999992 4899 99999999999999999999999998876 5668
Q ss_pred CceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-CCcccccCCCCCCCCccccC
Q psy11919 340 DEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK-PEIFKLFGSFMGKPDVLFLN 418 (453)
Q Consensus 340 ~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~-~~~F~LF~S~~~~kNLLF~D 418 (453)
+||+||||||+|+||++|++|||+++|||+||+|++... .++|+++|+++|++||++ .+.|+||+|+.+++||||+|
T Consensus 225 ~dyeLLC~dGtr~pv~~~~~C~la~vP~~aVv~r~~~~~--~~~i~~~L~~~~~~fg~~~~~~F~lF~s~~~~kdLLFkD 302 (691)
T 1cb6_A 225 DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGK--EDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302 (691)
T ss_dssp GGEEEECTTSCEEEGGGTTTSCSEEEECCEEEEESSSCC--HHHHHHHHHHHHHHHSTTSCSSCCSSCCCTTCCCSSSCT
T ss_pred cceEEECCCCCcCCcccCccceecccCCceEEEcCCcch--HHHHHHHHHHHHHHhccCCCCcccccCCcccCCCccccc
Confidence 999999999999999999999999999999999998763 357999999999999954 45899999998889999999
Q ss_pred CCCccccCCCC-ChHHHH--HHHHHHHhhccc
Q psy11919 419 PATGVESLPDQ-ATDVET--NFSNNMLSKVMY 447 (453)
Q Consensus 419 sT~~L~~v~~~-~~~~y~--~y~~~~~~~i~~ 447 (453)
+|++|+.+++. +++.|+ +|++ +++.++.
T Consensus 303 st~~L~~~~~~~~~~~yLg~~Y~~-~i~~l~~ 333 (691)
T 1cb6_A 303 SAIGFSRVPPRIDSGLYLGSGYFT-AIQNLRK 333 (691)
T ss_dssp TCCEEEECCTTCCHHHHHHHHHHH-HHHHTTS
T ss_pred cchhheeCCCCCCHHHHhhHHHHH-HHHhhcc
Confidence 99999999864 899997 6888 5655555
No 9
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=100.00 E-value=6.1e-70 Score=592.78 Aligned_cols=298 Identities=27% Similarity=0.408 Sum_probs=260.0
Q ss_pred ccccccccccCccCchh--hhhhhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCcccccc-cccccc
Q psy11919 127 VLTADWRQYLPVYSNLA--SCKLRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAA-KSVWLP 197 (453)
Q Consensus 127 ~~tvrW~~~~CV~s~le--KC~~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~-k~~l~~ 197 (453)
.++||| ||+++.| ||+.++... .++.| .+.||++.|+.+||+ ||++++|++++|+|+ +...+
T Consensus 4 ~~~vrw----Cv~s~~E~~KC~~l~~~~--~~~~p--~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~~L- 74 (686)
T 2d3i_A 4 KSVIRW----CTISSPEEKKCNNLRDLT--QQERI--SLTCVQKATYLDCIKAIANNEADAISLDGGQVFEAGLAPYKL- 74 (686)
T ss_dssp -CEEEE----EESSHHHHHHHHHHHHHT--TTSSS--EEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCC-
T ss_pred CCcEEE----EECCHHHHHHHHHHHHHH--hhcCC--ceEEEeCCCHHHHHHHHHcCCCCEEEeCccceEEeccccCCC-
Confidence 368999 9999866 996444433 34555 344799999999996 999999999999998 44333
Q ss_pred cccccccccCCC---CcE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCC---Cccccc
Q psy11919 198 FQCRNLEKYGNE---KDL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVC---PYYKGV 270 (453)
Q Consensus 198 ~~pi~~E~y~~~---~~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C---~~~kav 270 (453)
+||++|.|+.+ .+. |+||||||++++ +|+||||||+||||+++++||++||++|+++|+|++.+| +..+++
T Consensus 75 -~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~~-tl~dLkGKksCHtg~g~taGw~iPi~~L~~~g~i~~~~~~~~~~~~a~ 152 (686)
T 2d3i_A 75 -KPIAAEVYEHTEGSTTSYYAVAVVKKGTEF-TVNDLQGKTSCHTGLGRSAGWNIPIGTLIHRGAIEWEGIESGSVEQAV 152 (686)
T ss_dssp -EEEEEEEBCCTTCCBSEEEEEEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTSSCCCSGGGCCHHHHH
T ss_pred -EEEEEEeecCCCCCCCceEEEEEEECCCCC-CHHHhCCCccccCCCCCccchHHHHHHHHHcCCccccccccccHHHHH
Confidence 88999999763 344 999999999985 899999999999999999999999999999999999888 467899
Q ss_pred cccCCCCCccCCCCcccCCCCccccccccCC--------cccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCc
Q psy11919 271 EQFFSGGSCVPGLEEKEKSESPSLEKICHNI--------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDE 341 (453)
Q Consensus 271 s~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~--------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~d 341 (453)
++||+ +||+||++.. ++||+||.|+ ++|| |+||||||+||+||||||+|++|.+.|.. . ++|
T Consensus 153 s~FFs-~SC~PG~~~~-----~~LC~lC~g~~~C~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tv~~~~~~-~--~~d 223 (686)
T 2d3i_A 153 AKFFS-ASCVPGATIE-----QKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPD-Q--KDE 223 (686)
T ss_dssp HHHSS-EEECTTCCSC-----GGGTTTCCSCTTTTTSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCGG-G--GGG
T ss_pred HHhcC-CcccCCCCCc-----cchhhhcCCCCCcCCCCcccCcCcHHHHHHHHhcCCcEEEEecceecccccc-C--ccc
Confidence 99999 9999999864 8999999992 4899 99999999999999999999999998765 2 799
Q ss_pred eEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-CCcccccC-----CCCCCCCcc
Q psy11919 342 IEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK-PEIFKLFG-----SFMGKPDVL 415 (453)
Q Consensus 342 y~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~-~~~F~LF~-----S~~~~kNLL 415 (453)
|+||||||+|+||++|++|||+++|||+||+|++... ++|+++|+++|++||++ .+.|+||+ |+.+ +|||
T Consensus 224 yeLLC~dGtr~pv~~~~~C~la~vP~~aVv~r~~~~~---~~i~~~L~~~~~~fg~~~~~~F~lF~s~~~~s~~~-kdLl 299 (686)
T 2d3i_A 224 YELLCLDGSRQPVDNYKTCNWARVAAHAVVARDDNKV---EDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVL-KDLL 299 (686)
T ss_dssp EEEECTTSCEECGGGGGGSCSEEEECCEEEECSSTTH---HHHHHHHHHHHHHHSTTCCSSCCSSCCCSSSCGGG-SSCS
T ss_pred eEEECCCCCcCCCccCccceecccCCceEEEcCCCCH---HHHHHHHHHHHHHhccCCCccccccCCccccCCcC-Cccc
Confidence 9999999999999999999999999999999998763 47999999999999954 56899999 5444 9999
Q ss_pred ccCCCCccccCCCC-ChHHHH--HHHHHHHhhcccCC
Q psy11919 416 FLNPATGVESLPDQ-ATDVET--NFSNNMLSKVMYCS 449 (453)
Q Consensus 416 F~DsT~~L~~v~~~-~~~~y~--~y~~~~~~~i~~C~ 449 (453)
|+|+|++|+.+++. +++.|+ +|++ +++.++.|+
T Consensus 300 FkDst~~L~~~~~~~~~~~yLg~~Y~~-~i~~l~~~~ 335 (686)
T 2d3i_A 300 FKDSAIMLKRVPSLMDSQLYLGFEYYS-AIQSMRKDQ 335 (686)
T ss_dssp SCTTCCEEEECCTTCCHHHHHCHHHHH-HHHHTTSCC
T ss_pred eecCchhhhcCCCCCCHHHHhCHHHHH-HHHhhhccc
Confidence 99999999999864 899997 7999 777888874
No 10
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=100.00 E-value=4.4e-70 Score=594.15 Aligned_cols=301 Identities=30% Similarity=0.480 Sum_probs=256.0
Q ss_pred ccccccccccCccCchh--hhh-hhhhhccc-cCCCccceeeeccCCChhhhhh------hceeccCCCcccccc-cccc
Q psy11919 127 VLTADWRQYLPVYSNLA--SCK-LRSATHYQ-VDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAA-KSVW 195 (453)
Q Consensus 127 ~~tvrW~~~~CV~s~le--KC~-~~~a~~~~-~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~-k~~l 195 (453)
.++||| ||+|+.| ||+ |..+++.. .++.| .+.||++.|+.+||+ ||++++|++++|+|+ +...
T Consensus 22 ~~~vrw----Cv~s~~E~~KC~~l~~~~~~~~~~~~p--~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~ 95 (698)
T 3v83_A 22 DKTVRW----CAVSEHEATKCQSFRDHMKSVIPSDGP--SVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNN 95 (698)
T ss_dssp -CEEEE----EEEHHHHHHHHHHHHHHHHTTSCTTSC--EEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTC
T ss_pred CCcEEE----eeCCHHHHHHHHHHHHHHHhhccCCCC--ceEEEecCCHHHHHHHHHcCCCCEEEEChHHHHhhccCcCC
Confidence 468999 9999876 995 65555432 12444 345799999999996 999999999999997 3333
Q ss_pred cccccccccccCCCC---cE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCC--CCcccc
Q psy11919 196 LPFQCRNLEKYGNEK---DL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDV--CPYYKG 269 (453)
Q Consensus 196 ~~~~pi~~E~y~~~~---~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~--C~~~ka 269 (453)
+ +||++|.|+.++ +. |+||||||++++ +|+||||||+||||+++++||++||++|+ +++.+ ++..++
T Consensus 96 L--~Pv~~E~y~~~~~~~~~YyaVAVVkk~s~~-~l~dLrGKksChtg~g~taGw~iPi~~L~----~~~~~~~~~~~~a 168 (698)
T 3v83_A 96 L--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGF-QMNQLRGKKSCHTGLGRSAGWNIPIGLLY----CDLPEPRKPLEKA 168 (698)
T ss_dssp E--EEEEEEEEECSSSEESEEEEEEEEESSCCC-CGGGCTTCCEEESCTTCTTTTHHHHHHHG----GGSCSCCCSHHHH
T ss_pred c--EEEEEEeeccCCCCCcceEEEEEEeCCCCC-CHHHcCCCCcccCCCCCcccHHHHHHHHe----eccCCCCchHHHH
Confidence 3 789999997753 45 999999999986 59999999999999999999999999994 44443 477899
Q ss_pred ccccCCCCCccCCCCcccCCCCccccccccC-----Ccccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceE
Q psy11919 270 VEQFFSGGSCVPGLEEKEKSESPSLEKICHN-----ITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIE 343 (453)
Q Consensus 270 vs~FFs~~SC~PG~~~~~~n~~~nLC~lC~g-----~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~ 343 (453)
+++||+ +||+||++.. .|+|||+||.| .++|| |+||||||+||+||||||+|+||.+.+.. +.+.+||+
T Consensus 169 vs~FFs-~SC~PG~~~~---~y~~LC~LC~gC~~s~~e~Y~Gy~GAfrCL~eg~GDVAFVk~~tV~e~~~~-~~~~~dye 243 (698)
T 3v83_A 169 VANFFS-GSCAPCADGT---DFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLAN-KADRDQYE 243 (698)
T ss_dssp HHHHSS-SEECTTSCTT---TCGGGGTTSTTCCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCCC-HHHHTTEE
T ss_pred HHHhhh-ccccCCCCCC---cChhhhhhccCCCCCCCCcCcCchhHHHhhhcCCCcEEEEEchhhhhhccC-CCChhheE
Confidence 999999 9999999865 36899999996 35899 99999999999999999999999986543 33479999
Q ss_pred EecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcC-CCCcccccCCCCCCCCccccCCCCc
Q psy11919 344 FLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATG 422 (453)
Q Consensus 344 LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~-~~~~F~LF~S~~~~kNLLF~DsT~~ 422 (453)
||||||+|+||++|++|||+++|||+||+|++.. ..+.|+++|.++|++||+ ..+.|+||+|+.+ +||||+|+|++
T Consensus 244 LLC~DGtr~pv~~~~~C~la~vP~~aVv~r~~~~--~~~~i~~~L~~~q~~fg~~~~~~F~lF~s~~~-kdLlF~Dst~~ 320 (698)
T 3v83_A 244 LLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGG--KEDLIWELLNQAQEHFGKDKSKEFQLFSSPHG-KDLLFKDSAHG 320 (698)
T ss_dssp EECTTSCEECGGGGGGSCSEEEECCEEEEETTSS--CHHHHHHHHHHHHHHHSTTCCCSCCTTCCTTC-SSSSSCTTCCE
T ss_pred EecCCCCcCCCCCCCCCeeeeccCceEEEcCCcc--hHHHHHHHHHHHHHHhCcCCCCcceeecCCCC-CceeeccCccc
Confidence 9999999999999999999999999999999754 246899999999999995 4668999999975 99999999999
Q ss_pred cccCCCC-ChHHHH--HHHHHHHhhcccCC
Q psy11919 423 VESLPDQ-ATDVET--NFSNNMLSKVMYCS 449 (453)
Q Consensus 423 L~~v~~~-~~~~y~--~y~~~~~~~i~~C~ 449 (453)
|+.+++. +++.|+ +|++ ++..++.|+
T Consensus 321 L~~i~~~~~~~~yLg~~Y~~-~i~~l~~~~ 349 (698)
T 3v83_A 321 FLKVPPRMDAKMYLGYEYVT-AIRNLREGT 349 (698)
T ss_dssp EEECCTTCCHHHHHCHHHHH-HHHHHHTTC
T ss_pred cccCCCCCCHHHhccHHHHH-HHHhhhccC
Confidence 9999876 899996 7998 666777663
No 11
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=100.00 E-value=1e-69 Score=547.49 Aligned_cols=298 Identities=31% Similarity=0.504 Sum_probs=257.0
Q ss_pred cccccccccCccCchh--hhh-hhhhhccccCC-CccceeeeccCCChhhhhh------hceeccCCCcccccc-ccccc
Q psy11919 128 LTADWRQYLPVYSNLA--SCK-LRSATHYQVDL-TDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAA-KSVWL 196 (453)
Q Consensus 128 ~tvrW~~~~CV~s~le--KC~-~~~a~~~~~~i-~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~-k~~l~ 196 (453)
++||| ||+++.| ||+ |..++.. ++ .|...+.|++++|..+||+ ||++.++++++|+|+ +...
T Consensus 4 ~~vrw----Cv~s~~e~~KC~~l~~~~~~--~~~~~~~~vecv~~~dy~~ci~ai~~g~aD~~~l~~~~~~~A~~~~~~- 76 (327)
T 1ryo_A 4 KTVRW----CAVSEHEATKCQSFRDHMKS--VIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNN- 76 (327)
T ss_dssp CEEEE----EEEHHHHHHHHHHHHHHHHH--HSCTTSCEEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTC-
T ss_pred CCEEE----EECCHHHHHHHHHHHHHHhh--ccccCCCceEEEecCCHHHHHHHHHcCCCcEEEeCccceeEEecccCC-
Confidence 68999 9999866 996 5555533 33 1233566899999999996 999999999999998 4443
Q ss_pred ccccccccccCCC---CcE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccc
Q psy11919 197 PFQCRNLEKYGNE---KDL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQ 272 (453)
Q Consensus 197 ~~~pi~~E~y~~~---~~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~ 272 (453)
++||++|.|+.+ .+. |+||||||++++ +|+||||||+||+|+++++||++|++.|+++ ++.. +|+..+++++
T Consensus 77 -l~pi~ae~~~~~~~~~~~Y~sVaVVkkdS~i-sl~dLkGKk~ch~~~~stsG~~iP~~~L~~~-~~~~-~~~~~~~~~~ 152 (327)
T 1ryo_A 77 -LKPVVAEFYGSKEDPQTFYYAVAVVKKDSGF-QMNQLRGKKSCHTGLGRSAGWNIPIGLLYCD-LPEP-RKPLEKAVAN 152 (327)
T ss_dssp -CEEEEEEEEECSSSEESEEEEEEEEETTCCC-CGGGCTTCCEEESCTTCTTTTHHHHHHHGGG-SCSC-CCSHHHHHHH
T ss_pred -CEEEEEEEecCCCCCCCceEEEEEEeCCCCC-ChHHhCCCceEcCCCCCcchhhhHHHHHHhh-cccc-cccchhhHHH
Confidence 388999999762 344 999999999997 9999999999999999999999999999987 4432 3488899999
Q ss_pred cCCCCCccCCCCcccCCCCccccccccC-----Ccccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEec
Q psy11919 273 FFSGGSCVPGLEEKEKSESPSLEKICHN-----ITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLC 346 (453)
Q Consensus 273 FFs~~SC~PG~~~~~~n~~~nLC~lC~g-----~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLC 346 (453)
||+ +||+||+... .|+|||+||.| .++|+ |+||||||+||+||||||+|++|.+.|+. +.+.+||+|||
T Consensus 153 fF~-~sC~pg~~~~---~y~~LC~lC~gC~~~~~~~y~G~~gA~rcL~eG~gDVAfv~~~~v~~~~~~-~~~~~d~~lLc 227 (327)
T 1ryo_A 153 FFS-GSCAPCADGT---DFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLAN-KADRDQYELLC 227 (327)
T ss_dssp HSS-SEECTTSCTT---TCGGGGTTSTTCCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCCS-HHHHTTEEEEC
T ss_pred hcc-ccccCCcccc---ccchhhhhcccCCCCCCCCccCcHHHHHHHHcCCccEEEEeccchhhhhhh-cccccceeEEc
Confidence 999 9999999765 36899999996 24899 99999999999999999999999998875 56689999999
Q ss_pred CCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-CCcccccCCCCCCCCccccCCCCcccc
Q psy11919 347 SKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK-PEIFKLFGSFMGKPDVLFLNPATGVES 425 (453)
Q Consensus 347 pdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~-~~~F~LF~S~~~~kNLLF~DsT~~L~~ 425 (453)
|||+|+||++|++|||+++|+|+||+|++... .++|+++|++++++||++ .+.|+||+|+.+ +||||+|+|++|+.
T Consensus 228 ~dg~~~pi~~~~~C~l~~~P~~~vv~r~~~~~--~~~i~~~l~~~~~~fg~~~~~~F~lF~s~~~-knllF~D~t~~l~~ 304 (327)
T 1ryo_A 228 LDNTRKPVDEYKDCHLAQVPSHTVVARSMGGK--EDLIWELLNQAQEHFGKDKSKEFQLFSSPHG-KDLLFKDSAHGFLK 304 (327)
T ss_dssp TTSCEEEGGGGGGSCSEEEECCEEEECSSSCC--HHHHHHHHHHHHHHHSTTTCSSCCTTCCTTC-SSSSSCTTEEEEEE
T ss_pred cCCcccCCCCCCcceeccCCCceEEEeCCCCH--HHHHHHHHHHHHHHhCcCCCCceeeeCCCCC-CCCCEecCccccee
Confidence 99999999999999999999999999998775 367999999999999954 459999999987 99999999999999
Q ss_pred CCCC-ChHHHH--HHHHHHHhhc
Q psy11919 426 LPDQ-ATDVET--NFSNNMLSKV 445 (453)
Q Consensus 426 v~~~-~~~~y~--~y~~~~~~~i 445 (453)
+++. +|+.|+ +|+. ++.++
T Consensus 305 ~~~~~~~~~~lg~~y~~-~~~~l 326 (327)
T 1ryo_A 305 VPPRMDAKMYLGYEYVT-AIRNL 326 (327)
T ss_dssp CCTTCCHHHHHCHHHHH-HHHHH
T ss_pred CCCCCCHHHHcCHHHHH-HHHhc
Confidence 9865 999996 6988 55444
No 12
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=100.00 E-value=9.1e-69 Score=584.33 Aligned_cols=299 Identities=29% Similarity=0.492 Sum_probs=257.9
Q ss_pred cccccccccCccCchh--hhh-hhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCcccccc-cccccc
Q psy11919 128 LTADWRQYLPVYSNLA--SCK-LRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAA-KSVWLP 197 (453)
Q Consensus 128 ~tvrW~~~~CV~s~le--KC~-~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~-k~~l~~ 197 (453)
++||| ||+|+.| ||+ |..++... ..+ .+.||+++++.+||+ ||++++|++++|+|+ +...+
T Consensus 4 ~~vrw----Cv~s~~e~~KC~~l~~~~~~~-~~~---~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~~l- 74 (689)
T 1blf_A 4 KNVRW----CTISQPEWFKCRRWQWRMKKL-GAP---SITCVRRAFALECIRAIAEKKADAVTLDGGMVFEAGRDPYKL- 74 (689)
T ss_dssp -CEEE----EESSHHHHHHHHHHHHHHGGG-CSC---CEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCE-
T ss_pred CcEEE----EEcCHHHHHHHHHHHHHHHhc-CCC---ceEEEEcCCHHHHHHHHHcCCCCEEEEChhHeEEeccccCCC-
Confidence 68999 9999877 996 55444221 223 345799999999996 999999999999998 44433
Q ss_pred cccccccccCCC---CcE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCC--Ccccccc
Q psy11919 198 FQCRNLEKYGNE---KDL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVC--PYYKGVE 271 (453)
Q Consensus 198 ~~pi~~E~y~~~---~~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C--~~~kavs 271 (453)
+||++|.|+.+ ... |+||||||++++ +|+||||||+||||+++++||++||+.|+++ |++.+| +..++++
T Consensus 75 -~pv~aE~y~~~~~~~~~Y~aVAVVkk~s~~-tl~dLkGKksChtg~~~taGw~iPi~~L~~~--i~~~~~~~~~~~a~s 150 (689)
T 1blf_A 75 -RPVAAEIYGTKESPQTHYYAVAVVKKGSNF-QLDQLQGRKSCHTGLGRSAGWIIPMGILRPY--LSWTESLEPLQGAVA 150 (689)
T ss_dssp -EEEEEEEEECSSSEESEEEEEEEEESSCCC-CSTTCTTCCEEESCTTCTTTTHHHHHHHHHH--HTCCTTTSCHHHHHH
T ss_pred -EEEEEEeecCCCCCCcceEEEEEEeCCCCC-CHHHhCCCceecCCCCCccchHHHHHHHHHh--cCccCCcchHHHHHH
Confidence 78999999763 234 999999999986 8999999999999999999999999999987 777776 5789999
Q ss_pred ccCCCCCccCCCCcccCCCCccccccccCC----------cccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCC
Q psy11919 272 QFFSGGSCVPGLEEKEKSESPSLEKICHNI----------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVD 340 (453)
Q Consensus 272 ~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~----------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~ 340 (453)
+||+ +||+||++.. .|+|||+||.|+ ++|| |+||||||+||+||||||+|++|.+.|.. +...+
T Consensus 151 ~fFs-~SC~PG~~~~---~y~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~GDVAFvk~~tv~~~~~~-~~~~~ 225 (689)
T 1blf_A 151 KFFS-ASCVPCIDRQ---AYPNLCQLCKGEGENQCACSSREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPE-KADRD 225 (689)
T ss_dssp TTSS-SEECTTSCTT---TCGGGSTTCCCCTTSTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCCS-HHHHT
T ss_pred HhcC-ccccCCCCcc---cchhhhHhccCCCcCccCCCCCccccCchHHHHHHHHcCCcEEEEeccccchhhcc-cCCcc
Confidence 9999 9999999765 368999999993 3899 99999999999999999999999997754 34469
Q ss_pred ceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-CCcccccCCCCCCCCccccCC
Q psy11919 341 EIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK-PEIFKLFGSFMGKPDVLFLNP 419 (453)
Q Consensus 341 dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~-~~~F~LF~S~~~~kNLLF~Ds 419 (453)
||+||||||+|+||++|++|||+++|+|+||+|++... +++|+++|+++|++||++ .+.|+||+|+.+++||||+|+
T Consensus 226 dy~lLC~dG~r~pv~~~~~C~la~vP~~aVv~r~~~~~--~~~i~~~L~~~~~~fg~~~~~~F~lF~s~~~~~dLlF~D~ 303 (689)
T 1blf_A 226 QYELLCLNNSRAPVDAFKECHLAQVPSHAVVARSVDGK--EDLIWKLLSKAQEKFGKNKSRSFQLFGSPPGQRDLLFKDS 303 (689)
T ss_dssp TEEECCTTSCCBCTTCTTTSCSEEEECCEEEEESSSCC--HHHHHHHHHHHHHHSSTTCCSSCCTTCCCTTSCCCSSCTT
T ss_pred cceEECCCCCccCcCcCccceecCcCCceEEEcCCccH--HHHHHHHHHHHHHHhccCCCcccccccCCccCCCcccccc
Confidence 99999999999999999999999999999999998764 468999999999999954 569999999988899999999
Q ss_pred CCccccCCCC-ChHHHH--HHHHHHHhhccc
Q psy11919 420 ATGVESLPDQ-ATDVET--NFSNNMLSKVMY 447 (453)
Q Consensus 420 T~~L~~v~~~-~~~~y~--~y~~~~~~~i~~ 447 (453)
|++|+.+++. +++.|+ +|++ .++.++.
T Consensus 304 t~~L~~~~~~~~~~~yLg~~Y~~-~i~~l~~ 333 (689)
T 1blf_A 304 ALGFLRIPSKVDSALYLGSRYLT-TLKNLRE 333 (689)
T ss_dssp CCEEEECCTTCCHHHHHHHHHHH-HHHHHHS
T ss_pred chhhccCCCCCCHHHHhhHHHHH-HHHhhcc
Confidence 9999999865 899997 6888 5555555
No 13
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=100.00 E-value=5e-69 Score=585.57 Aligned_cols=316 Identities=24% Similarity=0.402 Sum_probs=266.7
Q ss_pred cccceEeccCcchhhhhcceecccccccCCcCCCCCcccccccCCCcccccccccccCccCchh--hhhhhhhhccccCC
Q psy11919 80 SSKTLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLA--SCKLRSATHYQVDL 157 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~tvrW~~~~CV~s~le--KC~~~~a~~~~~~i 157 (453)
.++...|+|.+|++|++. |+...+ ..+++ .++||| ||+++.| ||+.++... .
T Consensus 313 ~~~~~~yLg~~Y~~~i~~-l~~~~~----~~~~~-------------~~~vrw----Cv~s~~E~~KC~~~~~~~----~ 366 (686)
T 2d3i_A 313 LMDSQLYLGFEYYSAIQS-MRKDQL----TPSPR-------------ENRIQW----CAVGKDEKSKCDRWSVVS----N 366 (686)
T ss_dssp TCCHHHHHCHHHHHHHHH-TTSCC-----------------------CCSEEE----EEEHHHHHHHHHHHHHHT----T
T ss_pred CCCHHHHhCHHHHHHHHh-hhcccc----CCCCC-------------CcceEE----eecCchHHHHHHHHHHhc----C
Confidence 355678999999999988 444221 11111 468999 9999877 996443332 1
Q ss_pred CccceeeeccCCChhhhhh------hceeccCCCcccccccccccccccccccccC-C-------CCc--EEEEEEEEcC
Q psy11919 158 TDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAKSVWLPFQCRNLEKYG-N-------EKD--LLAVAVVKKD 221 (453)
Q Consensus 158 ~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k~~l~~~~pi~~E~y~-~-------~~~--~~aVAVVkk~ 221 (453)
+ .+.||++.|..+||+ ||++.++++++|+|++.. ++|+|+|.|+ . +.. +|+|||||++
T Consensus 367 ~---~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~g---L~Pv~~E~y~~~~~c~~~~g~~~~Y~aVAVVkk~ 440 (686)
T 2d3i_A 367 G---DVECTVVDETKDCIIKIMKGEADAVALDGGLVYTAGVCG---LVPVMAERYDDESQCSKTDERPASYFAVAVARKD 440 (686)
T ss_dssp T---SEEEEEESSHHHHHHHHHHTSCCBEEECHHHHHHHHHTT---CEEEEEEECSCGGGC------CCCEEEEEEEESS
T ss_pred C---CeEEEeCCCHHHHHHHHHcCCCCEEEECchHHhhhhcCC---ceeeEEEeecccccccccCCCCceEEEEEEEecC
Confidence 2 456799999999996 999999999999999833 3889999997 2 122 4999999999
Q ss_pred CCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCccccccccCC
Q psy11919 222 SKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNI 301 (453)
Q Consensus 222 s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~ 301 (453)
++ .+|+||||||+||||+++++||++|+++|.++| .+| .+++||+ +||+||+++ +++||+||.|+
T Consensus 441 s~-~tl~dLkGkksChtg~gstaGw~iP~~~L~~~~----~~c----~~~~fFs-~sC~pg~~~-----~~~lC~lC~g~ 505 (686)
T 2d3i_A 441 SN-VNWNNLKGKKSCHTAVGRTAGWVIPMGLIHNRT----GTC----NFDEYFS-EGCAPGSPP-----NSRLCQLCQGS 505 (686)
T ss_dssp SC-CCTTSCTTSEEEESCTTCTTTTHHHHHHHHHHH----CCC----CGGGTSS-EEECTTSCT-----TSGGGTTCCCC
T ss_pred CC-CCHHHhcCCCcccCCCCCCcchhhHHHHHhhCC----Ccc----cHHHhCc-ccccCCCCC-----chhhhhhccCC
Confidence 87 699999999999999999999999999999886 357 4899999 999999976 48999999874
Q ss_pred -------------cccc-ccchhhhhhcCCCcEEEEechhhHHH--------HhcCCCCCCceEEecCCCCCccCCCCcC
Q psy11919 302 -------------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEA--------IEEGIFKVDEIEFLCSKGGRAPVSKAAD 359 (453)
Q Consensus 302 -------------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~--------~~~~~~~~~dy~LLCpdGsr~pi~~~~~ 359 (453)
++|| |.||||||+|| ||||||+|+||.+. |+. +++++||+||||||+|+||++|+.
T Consensus 506 ~~~~~~~C~~~~~e~Y~Gy~GAfrCL~eg-GDVAFvkh~tv~~~~~g~~~~~wa~-~l~~~d~eLLCpdg~r~~v~~~~~ 583 (686)
T 2d3i_A 506 GGIPPEKCVASSHEKYFGYTGALRCLVEK-GDVAFIQHSTVEENTGGKNKADWAK-NLQMDDFELLCTDGRRANVMDYRE 583 (686)
T ss_dssp SSSSCCTTCSSTTSTTCHHHHHHHHHHHT-CSEEEEETTHHHHTSTTCCCSTTTT-TCCGGGEEEECTTSCEEEGGGGGG
T ss_pred CccccCccCCCCcccccCcchhHHhhccC-CcEEEEechhHHhhccCCCcchhhc-cCCccceEEECCCCCcCCcccCCc
Confidence 3799 99999999999 99999999999884 554 577899999999999999999999
Q ss_pred CcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-C--CcccccCCCCCCCCccccCCCCccccCCCC-ChHHHH
Q psy11919 360 CNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK-P--EIFKLFGSFMGKPDVLFLNPATGVESLPDQ-ATDVET 435 (453)
Q Consensus 360 Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~-~--~~F~LF~S~~~~kNLLF~DsT~~L~~v~~~-~~~~y~ 435 (453)
|||+++|+|+||+|++.. ++|+++|+++|++||++ . +.|+||+| +.+||||+|+|++|+.+++. +|+.|+
T Consensus 584 C~la~~p~~avv~r~~~~----~~v~~~l~~~q~~fg~~~~~~~~F~lf~s--~~~nlLF~D~t~~L~~~~~~~~~~~~l 657 (686)
T 2d3i_A 584 CNLAEVPTHAVVVRPEKA----NKIRDLLERQEKRFGVNGSEKSKFMMFES--QNKDLLFKDLTKCLFKVREGTTYKEFL 657 (686)
T ss_dssp SCSEEECCCEEEECGGGH----HHHHHHHHHHHHHHSTTCTTTTTCCTTCC--SSSCCSSCTTCCEEEECCTTCCHHHHH
T ss_pred ccccccCCCeEEecccHH----HHHHHHHHHHHHHhCcCCCCCCceEecCC--CCCCCCeecCccccccCCCCCcHHHHh
Confidence 999999999999999753 68999999999999954 3 68999999 35999999999999999865 999995
Q ss_pred --HHHHHHHhhcccCCCC
Q psy11919 436 --NFSNNMLSKVMYCSGK 451 (453)
Q Consensus 436 --~y~~~~~~~i~~C~~~ 451 (453)
+|+. +++++++|+.+
T Consensus 658 g~~y~~-~~~~~~~c~~~ 674 (686)
T 2d3i_A 658 GDKFYT-VISSLKTCNPS 674 (686)
T ss_dssp CHHHHH-HHHHHTTTCCC
T ss_pred HHHHHH-HHHHHhccCcH
Confidence 8999 89999999654
No 14
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=100.00 E-value=1e-68 Score=583.84 Aligned_cols=316 Identities=24% Similarity=0.413 Sum_probs=270.8
Q ss_pred ccceEeccCcchhhhhcceecccccccCCcCCCCCcccccccCCCcccccccccccCccCchh--hhh-hhhhhccccCC
Q psy11919 81 SKTLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLA--SCK-LRSATHYQVDL 157 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~tvrW~~~~CV~s~le--KC~-~~~a~~~~~~i 157 (453)
++...|+|.+|+++++. |+.+.+. |. ++ .++||| ||+++.| ||+ |..++
T Consensus 314 ~~~~~yLg~~Y~~~i~~-l~~~~~~---~~-~~-------------~~~vrw----Cv~s~~E~~KC~~~~~~~------ 365 (689)
T 1blf_A 314 VDSALYLGSRYLTTLKN-LRETAEE---VK-AR-------------YTRVVW----CAVGPEEQKKCQQWSQQS------ 365 (689)
T ss_dssp CCHHHHHHHHHHHHHHH-HHSCHHH---HH-HH-------------HHSEEE----EEESHHHHHHHHHHHHHT------
T ss_pred CCHHHHhhHHHHHHHHh-hcccccC---CC-CC-------------CcceEE----eecCcHHHHHHHHHHHhc------
Confidence 45667999999999987 4442211 11 11 468999 9999877 995 54443
Q ss_pred CccceeeeccCCChhhhhh------hceeccCCCcccccccccccccccccccccCCC-----------C-cEEEEEEEE
Q psy11919 158 TDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNE-----------K-DLLAVAVVK 219 (453)
Q Consensus 158 ~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k~~l~~~~pi~~E~y~~~-----------~-~~~aVAVVk 219 (453)
.+ .+.||+++|.++||+ ||++++|++++|+|++..+ +|||+|.|+.+ . .+|+|||||
T Consensus 366 ~~--~i~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~gL---~Pv~~E~y~~~~~~~~~c~~~~~~~Y~aVAVVk 440 (689)
T 1blf_A 366 GQ--NVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGL---VPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVK 440 (689)
T ss_dssp TS--SEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHTTTC---EEEEEEECCCSSCSSSCTTTSCCCCEEEEEEEE
T ss_pred CC--CeEEEeCCCHHHHHHHHHcCCCCEEEeCcHHHHHHhhcCC---EEEEEeeecCccccccccccCCccceEEEEEEE
Confidence 12 566899999999996 9999999999999999333 88999999764 1 249999999
Q ss_pred cCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCcccccccc
Q psy11919 220 KDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICH 299 (453)
Q Consensus 220 k~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~nLC~lC~ 299 (453)
|++++.+|+||||||+||||+++++||++||++|+++| .+|+ +++||+ +||+||+++ +++||+||.
T Consensus 441 k~s~~~t~~dLkGkksChtg~~~taGw~iP~~~L~~~~----~~c~----~~~fFs-~sC~PG~~~-----~~~lC~lC~ 506 (689)
T 1blf_A 441 KANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQT----GSCA----FDEFFS-QSCAPGADP-----KSRLCALCA 506 (689)
T ss_dssp TTSTTCCSGGGTTSEEEESCTTCTTTTHHHHHHHHHHH----TCSC----GGGTSS-EEECTTSCT-----TSTTSTTCC
T ss_pred cCCCcCCHHHHcCCCcccCCCCCCcchhhhHHHHhhCC----CCCc----HHHhcC-CcccCCCCC-----chhHHHhhc
Confidence 99989999999999999999999999999999999987 2573 899999 999999977 489999999
Q ss_pred CC------------cccc-ccchhhhhhcCCCcEEEEechhhHHH--------HhcCCCCCCceEEecCCCCCccCCCCc
Q psy11919 300 NI------------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEA--------IEEGIFKVDEIEFLCSKGGRAPVSKAA 358 (453)
Q Consensus 300 g~------------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~--------~~~~~~~~~dy~LLCpdGsr~pi~~~~ 358 (453)
|+ ++|| |.||||||+||+||||||+|++|.+. |+. +++.+||+||||||+|+|+++|+
T Consensus 507 g~~~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~gDVAFv~~~tv~~~~~g~~~~~wa~-~~~~~d~~LLC~dg~r~~v~~~~ 585 (689)
T 1blf_A 507 GDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAK-NLNREDFRLLCLDGTRKPVTEAQ 585 (689)
T ss_dssp CSSSCCSTTCSSTTSTTCHHHHHHHHHHTTSSSEEEEEHHHHHHTSTTSCCSTTTT-TCCGGGEEEECTTSCEEETTCCS
T ss_pred CCCccccccCCCCcccccCchHHHHHHHcCCCcEEEecchhHHHhhccCCchhhhh-hccccceEEECCCCCccCcccCc
Confidence 74 3799 99999999999999999999999884 444 57789999999999999999999
Q ss_pred CCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC----CCcccccCCCCCCCCccccCCCCccccCCCC-ChHH
Q psy11919 359 DCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK----PEIFKLFGSFMGKPDVLFLNPATGVESLPDQ-ATDV 433 (453)
Q Consensus 359 ~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~----~~~F~LF~S~~~~kNLLF~DsT~~L~~v~~~-~~~~ 433 (453)
+|||+++|+|+||+|++.. ++|+++|+++|++||++ ++.|+||+|. .+||||+|+|++|+.+++. +|+.
T Consensus 586 ~C~l~~vP~~~Vv~r~~~~----~~i~~~l~~~~~~fg~~~~~~~~~F~lf~s~--~~nllF~D~t~~L~~~~~~~~~~~ 659 (689)
T 1blf_A 586 SCHLAVAPNHAVVSRSDRA----AHVKQVLLHQQALFGKNGKNCPDKFCLFKSE--TKNLLFNDNTECLAKLGGRPTYEE 659 (689)
T ss_dssp SSCSEEECCCEEEECTTTH----HHHHHHHHHHHHHHSTTCSSTTTTCCTTCSS--SSCCSSCTTCCEEEECCSSCCHHH
T ss_pred cceeccCCCceEEECCchH----HHHHHHHHHHHHHhCcCCCCCCCCeeccCCC--CCCCccccCccCcccCCCCCcHHH
Confidence 9999999999999999864 58999999999999954 3689999993 5999999999999999865 9999
Q ss_pred HH--HHHHHHHhhcccCCCC
Q psy11919 434 ET--NFSNNMLSKVMYCSGK 451 (453)
Q Consensus 434 y~--~y~~~~~~~i~~C~~~ 451 (453)
|+ +|+. +++++++|+.+
T Consensus 660 ~lg~~y~~-~~~~~~~c~~~ 678 (689)
T 1blf_A 660 YLGTEYVT-AIANLKKCSTS 678 (689)
T ss_dssp HHCHHHHH-HHHHHTTSSCC
T ss_pred HhHHHHHH-HHHHHhhcCch
Confidence 95 8999 89999999654
No 15
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=100.00 E-value=1.6e-68 Score=582.00 Aligned_cols=317 Identities=24% Similarity=0.412 Sum_probs=271.1
Q ss_pred ccceEeccCcchhhhhcceecccccccCCcCCCCCcccccccCCCcccccccccccCccCchh--hhhhhhhhccccCCC
Q psy11919 81 SKTLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLA--SCKLRSATHYQVDLT 158 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~tvrW~~~~CV~s~le--KC~~~~a~~~~~~i~ 158 (453)
++...|+|.+|+.|++. |+.+.+. |. ++ .++||| ||+++.| ||+.|+... .
T Consensus 314 ~~~~~yLg~~Y~~~i~~-l~~~~~~---~~-~~-------------~~~vrw----Cv~s~~E~~KC~~~~~~~-----~ 366 (691)
T 1cb6_A 314 IDSGLYLGSGYFTAIQN-LRKSEEE---VA-AR-------------RARVVW----CAVGEQELRKCNQWSGLS-----E 366 (691)
T ss_dssp CCHHHHHHHHHHHHHHH-TTSCHHH---HH-HH-------------HHSEEE----EEESHHHHHHHHHHHHHT-----T
T ss_pred CCHHHHhhHHHHHHHHh-hcccccC---CC-CC-------------CcceEE----eecCcHHHHHHHHHHHhc-----C
Confidence 55678999899999887 4443211 01 11 468999 9999877 996443332 1
Q ss_pred ccceeeeccCCChhhhhh------hceeccCCCcccccccccccccccccccccCC------C-------C-cEEEEEEE
Q psy11919 159 DISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGN------E-------K-DLLAVAVV 218 (453)
Q Consensus 159 pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k~~l~~~~pi~~E~y~~------~-------~-~~~aVAVV 218 (453)
| .+.||++++.++||+ ||++++|++++|+|++..+ +|||+|.|+. + . .+|+||||
T Consensus 367 ~--~i~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~gL---~Pv~~E~y~~~~~~~~~~~c~~~~~~~Y~aVAVV 441 (691)
T 1cb6_A 367 G--SVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGL---VPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVV 441 (691)
T ss_dssp T--SEEEEEESSHHHHHHHHHHTSCCBEEECHHHHHHHHHTTC---EEEEEEEECSSSSCCCCTTGGGSCCCCEEEEEEE
T ss_pred C--CeEEEeCCCHHHHHHHHHcCCCCEEEeCcHHHHHHhhcCC---EEEEeeeecCccccccccccccCCCcceEEEEEE
Confidence 2 566899999999996 9999999999999999333 8899999976 3 1 24999999
Q ss_pred EcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCccccccc
Q psy11919 219 KKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKIC 298 (453)
Q Consensus 219 kk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~nLC~lC 298 (453)
||++++.+|+||||||+||||+++++||++||++|+++| .+|+ +++||+ +||+||++. +++||+||
T Consensus 442 kk~s~~~t~~dLkGkksChtg~~~taGw~iP~~~L~~~~----~~c~----~~~fFs-~sC~PG~~~-----~~~lC~lC 507 (691)
T 1cb6_A 442 RRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFNQT----GSCK----FDEYFS-QSCAPGSDP-----RSNLCALC 507 (691)
T ss_dssp ESSCTTCCGGGCTTSEEEESCTTCTTTTHHHHHHHHHHH----CCCC----GGGTSS-EEECTTSCT-----TSGGGTTC
T ss_pred EcCCCcCCHHHHCCCCcccCCCCCchHHHHHHHHHHhCC----CCCc----HHHhcC-CcccCCCCC-----chhhHHhh
Confidence 999999999999999999999999999999999999987 2574 899999 999999976 48999999
Q ss_pred cCC------------cccc-ccchhhhhhcCCCcEEEEechhhHHH--------HhcCCCCCCceEEecCCCCCccCCCC
Q psy11919 299 HNI------------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEA--------IEEGIFKVDEIEFLCSKGGRAPVSKA 357 (453)
Q Consensus 299 ~g~------------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~--------~~~~~~~~~dy~LLCpdGsr~pi~~~ 357 (453)
.|+ ++|| |.||||||+||+||||||+|++|.+. |+. +++++||+||||||+|+|+++|
T Consensus 508 ~g~~~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~gDVAFvk~~tv~~~~~g~~~~~wa~-~~~~~d~~LLC~dg~r~~v~~~ 586 (691)
T 1cb6_A 508 IGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAK-DLKLADFALLCLDGKRKPVTEA 586 (691)
T ss_dssp CCSTTSCSTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHTTSTTSSCSHHHH-TCCGGGEEEECTTSCEEEGGGG
T ss_pred cCCCccccccCCCCcccccCchhHHHHHHcCCCcEEEecchhHHHhhcCCCchhhhh-hcCccceEEECCCCCcCCcccc
Confidence 873 3799 99999999999999999999999874 655 5778999999999999999999
Q ss_pred cCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC----CCcccccCCCCCCCCccccCCCCccccCCCC-ChH
Q psy11919 358 ADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK----PEIFKLFGSFMGKPDVLFLNPATGVESLPDQ-ATD 432 (453)
Q Consensus 358 ~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~----~~~F~LF~S~~~~kNLLF~DsT~~L~~v~~~-~~~ 432 (453)
++|||+++|+|+||+|++.. ++|+++|+++|++||++ ++.|+||+|. .+||||+|+|++|+.+++. +|+
T Consensus 587 ~~C~la~vP~~aVv~r~~~~----~~i~~~l~~~~~~fg~~~~~~~~~F~lF~s~--~~nllF~D~t~~L~~~~~~~~~~ 660 (691)
T 1cb6_A 587 RSCHLAMAPNHAVVSRMDKV----ERLKQVLLHQQAKFGRNGSDCPDKFCLFQSE--TKNLLFNDNTECLARLHGKTTYE 660 (691)
T ss_dssp GGSCSEEECCCEEEECGGGH----HHHHHHHHHHHHHHSTTCSSTTTTCCTTCSS--SCCCSSCTTEEEEECCTTCCSHH
T ss_pred ccccccccCCceEEECccHH----HHHHHHHHHHHHHhccCCCCCCCceeccCCC--CCCCCEecCccccccCCCCCcHH
Confidence 99999999999999999864 68999999999999954 3689999993 5999999999999999865 999
Q ss_pred HHH--HHHHHHHhhcccCCCC
Q psy11919 433 VET--NFSNNMLSKVMYCSGK 451 (453)
Q Consensus 433 ~y~--~y~~~~~~~i~~C~~~ 451 (453)
.|+ +|+. +++++++|+.+
T Consensus 661 ~~lg~~y~~-~~~~~~~c~~~ 680 (691)
T 1cb6_A 661 KYLGPQYVA-GITNLKKCSTS 680 (691)
T ss_dssp HHHCHHHHH-HHHHHHHHCCC
T ss_pred HHhHHHHHH-HHHHHhcCCch
Confidence 995 8999 88899999654
No 16
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=97.75 E-value=2.5e-05 Score=77.34 Aligned_cols=131 Identities=20% Similarity=0.283 Sum_probs=91.9
Q ss_pred EEEEEEEcCCCCCCcccc----CCCCccCCCCCCCCcchHHHHHH-HHcCccCCCCCCccccccccCCCCCccCCCCccc
Q psy11919 213 LAVAVVKKDSKVQNFEDL----RGLKSCHSGYMDSSGWVAPVYHL-LEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKE 287 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dL----kGKKsCHtG~g~taGW~~Pv~~L-~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~ 287 (453)
+++.||++++++.+++|| |||+......++++|+.+|...| .+.|+ .. .+ |. .. .-|.
T Consensus 103 ~~~lvv~~ds~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi-~~---------~~-~~-~v-~~~~---- 165 (321)
T 3p7i_A 103 WSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNI-SA---------SD-FK-RT-VNAG---- 165 (321)
T ss_dssp CEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTC-CG---------GG-SS-EE-EECC----
T ss_pred EEEEEEECCCCCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCC-Ch---------hH-ce-ee-ecCC----
Confidence 678899999999999999 99998877788899999998765 44442 11 11 22 10 0000
Q ss_pred CCCCccccccccCCccccccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCC
Q psy11919 288 KSESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPP 367 (453)
Q Consensus 288 ~n~~~nLC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~ 367 (453)
+..++.-|..|..|++++....+..+.........++++|-.. ...|.
T Consensus 166 ------------------~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s--------------~~~p~ 213 (321)
T 3p7i_A 166 ------------------HETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKS--------------PLIPG 213 (321)
T ss_dssp ------------------HHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEEC--------------SCBCC
T ss_pred ------------------HHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEEc--------------CCCCC
Confidence 4568899999999999999877766433211113578888421 23577
Q ss_pred ceEEEcCCCChhHHHHHHHHHHHHH
Q psy11919 368 HMVVTSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 368 ~aVvtr~~~~~~~~~~I~~lL~~l~ 392 (453)
.+|+++++.+...++.|..+|.++.
T Consensus 214 ~~i~~~k~~~~~l~~~l~~aL~~~~ 238 (321)
T 3p7i_A 214 DPIVWRKNLSETTKDKIYDFFMNYG 238 (321)
T ss_dssp CEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred CceeeeCCCCHHHHHHHHHHHHhcC
Confidence 7899999987767778888877653
No 17
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=97.66 E-value=3.5e-05 Score=75.52 Aligned_cols=165 Identities=14% Similarity=0.129 Sum_probs=104.4
Q ss_pred hceeccCCCcccccccccccccccccccccCCCCcE-EEEEEEEcCCCCCCcccc----CCCCccCCCCCCCCcchHHHH
Q psy11919 177 QDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDL-LAVAVVKKDSKVQNFEDL----RGLKSCHSGYMDSSGWVAPVY 251 (453)
Q Consensus 177 AD~~v~daed~~~A~k~~l~~~~pi~~E~y~~~~~~-~aVAVVkk~s~~~sl~dL----kGKKsCHtG~g~taGW~~Pv~ 251 (453)
.|++...+..+..+..... .+++..-...++..+ ..+.||++++++.+++|| |||+...+..++++|+.++..
T Consensus 58 vDi~~~~~~~~~~~~~~~~--~~~~a~~~~~~g~~~~~~~lvv~~ds~i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~ 135 (310)
T 3n5l_A 58 VDIAWYGNKAAMEAVDRAH--GEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGY 135 (310)
T ss_dssp CSEEECCHHHHHHHHHHSC--EEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHH
T ss_pred CCEEEECcHHHHHHHHhcC--CeEEEEEeccCCCcceEEEEEEECCCCCCCHHHHhhhcCCCEEEecCCCccHhHHHHHH
Confidence 7888766544333322111 122221111122334 678899999999999999 999999888888899998876
Q ss_pred HHH-HcCccCCCCCCccccccccCCCCCccCCCCcccCCCCccccccccCCccccccchhhhhhcCCCcEEEEechhhHH
Q psy11919 252 HLL-EKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNE 330 (453)
Q Consensus 252 ~L~-~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~ 330 (453)
.|. +.| +. ..++|. .. ..|. +..++.-|..|..|++++....+..
T Consensus 136 ~l~~~~G-i~---------~~~~~~-~v-~~g~----------------------~~~~~~al~~G~vDa~~~~~~~~~~ 181 (310)
T 3n5l_A 136 YVFAKNN-VD---------PVKAFK-RT-LNSS----------------------HEVNALAVANKQVDVATFNTEGMER 181 (310)
T ss_dssp HTTTTTT-CC---------HHHHSS-EE-EECC----------------------HHHHHHHHHTTSSSEEEEEHHHHHH
T ss_pred HHHHHcC-CC---------hHHhcc-cc-ccCC----------------------HHHHHHHHHcCCccEEEecchhHHH
Confidence 553 333 21 123343 11 1111 4458899999999999999888776
Q ss_pred HHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHH
Q psy11919 331 AIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITA 391 (453)
Q Consensus 331 ~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l 391 (453)
+...+.....++++|-.. ...|..+|+++++.+...++.|..+|.++
T Consensus 182 ~~~~~~~~~~~lrvl~~s--------------~~~p~~~i~~~~~~~~~l~~~l~~al~~~ 228 (310)
T 3n5l_A 182 LELTQPEKARQLKVIWKS--------------PLIPGDPLVWRNNLSDEQKNKLRDFFFKY 228 (310)
T ss_dssp HHHHCHHHHTTEEEEEEE--------------EEEECCEEEEETTSCHHHHHHHHHHHHHC
T ss_pred HHHhCccchhCEEEEEEC--------------CCCCCCcEEEECCCCHHHHHHHHHHHHhc
Confidence 443311112568887521 24577789999998776677777777664
No 18
>2j4u_S Lactotransferrin, lactoferrin; membrane protein/hydrolase, membrane protein/hydrolase complex, iron, OMPC, porin, complex, protease; 2.99A {Camelus dromedarius}
Probab=97.58 E-value=2.1e-05 Score=57.42 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=29.9
Q ss_pred ccccccccccCccCchh--hhh-hhhhhccccCCCccceeeeccCCChhhh
Q psy11919 127 VLTADWRQYLPVYSNLA--SCK-LRSATHYQVDLTDISHWRRSSRNSSVKC 174 (453)
Q Consensus 127 ~~tvrW~~~~CV~s~le--KC~-~~~a~~~~~~i~pi~~~~CV~a~S~~dC 174 (453)
.++||| ||+|+.| ||+ |..++ ...+.|.+ .||++.|.+||
T Consensus 3 ~~~vrW----Ct~S~~E~~KC~~l~~~~--~~~~~P~l--~Cv~~~s~~eC 45 (45)
T 2j4u_S 3 KKSVRW----CTTSPAESKKCAQWQRRM--KKVRGPSV--TCVKKTSRFEC 45 (45)
T ss_dssp SSSBCC----CCCSSGGGSSCCSTTBTT--BSSCCSCB--CCCCCSSSSCC
T ss_pred CCCEEE----EECCHHHHHHHHHHHHHH--HhcCCCCe--EEeCCCCcCCC
Confidence 368999 9999988 995 55555 33456644 46999999988
No 19
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=90.17 E-value=1.2 Score=42.54 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=49.7
Q ss_pred EEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCcc
Q psy11919 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPS 293 (453)
Q Consensus 214 aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~n 293 (453)
.+.||++++++.+++||+|||..-+ .+ +.++.+....|.+.|+-. . .+ ++.. .+
T Consensus 113 ~~lvv~~~s~I~s~~DLkGk~i~v~-~g-s~~~~~~~~~l~~~Gl~~-~------~v-~~v~----~~------------ 166 (324)
T 3ksx_A 113 ETILVPSKSALRTVADLKGKRIAFQ-KG-SSAHNLLLRVLAKSGLSM-R------DI-TPLY----LS------------ 166 (324)
T ss_dssp EEEEEETTCSCCSGGGGTTCEEEEC-TT-SHHHHHHHHHHHHTTCCG-G------GS-EEEE----CC------------
T ss_pred eEEEEeCCCCCCCHHHhCCCEEEec-CC-ChHHHHHHHHHHHcCCCH-H------He-EEEe----CC------------
Confidence 4567788999999999999999876 44 333344444555555321 0 11 0110 00
Q ss_pred ccccccCCccccccchhhhhhcCCCcEEEEechhhHH
Q psy11919 294 LEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNE 330 (453)
Q Consensus 294 LC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~ 330 (453)
...++.-|..|..|++++.......
T Consensus 167 ------------~~~~~~al~~G~vDa~~~~~p~~~~ 191 (324)
T 3ksx_A 167 ------------PANARAAFAAGQVDAWAIWDPWYSA 191 (324)
T ss_dssp ------------HHHHHHHHHTTCCSEEEEETTHHHH
T ss_pred ------------HHHHHHHHHcCCCCEEEEccHHHHH
Confidence 3346788999999999887665544
No 20
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=89.59 E-value=1.2 Score=41.97 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=79.5
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCc
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESP 292 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~ 292 (453)
..+.||++++++.+++||+||+......+++ .+..-...+.+.|+-. +.+.+.
T Consensus 112 ~~~lvv~~~~~i~sl~dL~g~~i~~~~~gs~-~~~~~~~~l~~~G~~~-------~~v~~~------------------- 164 (314)
T 1us5_A 112 VVHVVARKDAGIRTVADLKGKRVVVGDVGSG-TEQNARQILEAYGLTF-------DDLGQA------------------- 164 (314)
T ss_dssp EEEEEEETTSSCSSGGGGTTSEEECCCTTCH-HHHHHHHHHHHTTCCG-------GGSSEE-------------------
T ss_pred eEEEEEECCCCCCcHHHhCCCEeecCCCCch-HHHHHHHHHHHcCCCH-------HHcCce-------------------
Confidence 5677889999999999999999887655432 2222222333333211 001000
Q ss_pred cccccccCCcccc-ccchhhhhhcCCCcEEEEech----hhHHHHhcCCCCCCceEEecCCCC-CccCC----CCcCCcc
Q psy11919 293 SLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQV----KVNEAIEEGIFKVDEIEFLCSKGG-RAPVS----KAADCNL 362 (453)
Q Consensus 293 nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~----tV~~~~~~~~~~~~dy~LLCpdGs-r~pi~----~~~~Cnl 362 (453)
.|. ...++.-|..|..|++|+... .+.+.... .+.++|--.+. |.++. .+..+.+
T Consensus 165 ----------~~~~~~~~~~al~~G~vda~~~~~~~p~~~~~~~~~~-----g~l~~l~v~~~~~~~~~~~~p~~~~~~i 229 (314)
T 1us5_A 165 ----------IRVSASQGIQLMQDKRADALFYTVGLGASAIQQLALT-----TPIALVAVDLNRIQAIAKKYPFYVGFNI 229 (314)
T ss_dssp ----------ECCCHHHHHHHHHTTSCSEEEEEECTTCHHHHHHHHH-----SCEEECCCCHHHHHTTTTTCTTCEEEEE
T ss_pred ----------ecCCHHHHHHHHHcCCccEEEEccCCCcHHHHHHHhc-----CCeEEEeCCHHHHHHHHHhCCCeEEEEe
Confidence 011 334677889999999997532 44443222 34555532221 11110 1111100
Q ss_pred -------------cccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCCCc
Q psy11919 363 -------------GVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEI 401 (453)
Q Consensus 363 -------------~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~~~~ 401 (453)
....|.+++++++.+++...++.+.+.+..+.+.+..+.
T Consensus 230 p~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~a~~~~~~~~~~~~p~ 281 (314)
T 1us5_A 230 PGGTYKGVDVTTPTVAVQAMLIASERLSEETVYKFMKAVFGNLEAFKKIHPN 281 (314)
T ss_dssp CTTSBTTBCSCEEEEEEEEEEEEETTSCHHHHHHHHHHHHSSHHHHHTTCHH
T ss_pred cCCCCCCCCCCcceEEEeEEEEEcCCCCHHHHHHHHHHHHhCHHHHHHhChH
Confidence 112267899999998876677777776655555533333
No 21
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=89.49 E-value=2.8 Score=38.44 Aligned_cols=123 Identities=12% Similarity=0.136 Sum_probs=70.1
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCc
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESP 292 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~ 292 (453)
..+.||++++++.+++||+||+.+-. .+.....-+..+....... . .+.
T Consensus 111 ~~~l~~~~~~~i~sl~dL~g~~v~~~---~g~~~~~~l~~~~~~~~~~------~-~~~--------------------- 159 (287)
T 2vha_A 111 GTRLLTKKGGDIKDFADLKGKAVVVT---SGTTSEVLLNKLNEEQKMN------M-RII--------------------- 159 (287)
T ss_dssp EEEEEEETTSSCCSGGGGTTCEEEEE---TTSHHHHHHHHHHHHTTCC------C-EEE---------------------
T ss_pred ceEEEEECCCCCCCHHHcCCCEEEEe---CCCcHHHHHHHHhhccCCC------c-eEE---------------------
Confidence 55778899999999999999997642 2221222222221110000 0 000
Q ss_pred cccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEE
Q psy11919 293 SLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVV 371 (453)
Q Consensus 293 nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVv 371 (453)
.|. ...+++-|..|..|++++....+...... .-...+++++-. ++ . ..+.+++
T Consensus 160 ----------~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~-~~~~~~~~~~~~-----~~--------~-~~~~~~~ 214 (287)
T 2vha_A 160 ----------SAKDHGDSFRTLESGRAVAFMMDDALLAGERAK-AKKPDNWDIVGK-----PQ--------S-QEAYGCM 214 (287)
T ss_dssp ----------EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTT-SSSGGGEEEESC-----CS--------C-EEEEEEE
T ss_pred ----------EcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHh-CCCCCceEecCC-----cc--------c-cCceEEE
Confidence 111 56688999999999999988777654432 112346776521 11 1 2234567
Q ss_pred EcCCCChhHHHHHHHHHHHHH
Q psy11919 372 TSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 372 tr~~~~~~~~~~I~~lL~~l~ 392 (453)
++++ ....++.|...|.++.
T Consensus 215 ~~k~-~~~l~~~l~~~l~~l~ 234 (287)
T 2vha_A 215 LRKD-DPQFKKLMDDTIAQVQ 234 (287)
T ss_dssp ECTT-CHHHHHHHHHHHHHHH
T ss_pred EeCC-CHHHHHHHHHHHHHHH
Confidence 7776 4445667777776653
No 22
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=89.42 E-value=1.2 Score=43.58 Aligned_cols=140 Identities=21% Similarity=0.177 Sum_probs=81.2
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHH-cCccCCCCCCccccccccCCCCCccCCCCcccCCCC
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLE-KGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSES 291 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~-~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~ 291 (453)
..+.||++++++++++||+|||.+....|+ |-..-+..+++ .| +.. .++-. +
T Consensus 127 ~~~lvv~~ds~i~sl~DL~gk~v~~~~~Gs--~~~~~~~~~l~~~G-i~~---------~~v~~----v----------- 179 (327)
T 4ddd_A 127 YLTIVVKKSSNISVIDDIKGKRVNIGSPGT--GVRVAMLKLLGEKG-WTK---------KDFSV----M----------- 179 (327)
T ss_dssp EEEEEEETTSSCCSGGGGTTSEEECCSTTS--HHHHHHHHHHHHHT-CCG---------GGCSE----E-----------
T ss_pred cEEEEEECCCCCCCHHHhCCCEEecCCCCc--cHHHHHHHHHHHcC-CCh---------Hhcch----h-----------
Confidence 567789999999999999999998765442 22333333333 33 210 11100 0
Q ss_pred ccccccccCCcccc-ccchhhhhhcCCCcEEEEech----hhHHHHhcCCCCCCceEEecCCCC-CccC-----------
Q psy11919 292 PSLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQV----KVNEAIEEGIFKVDEIEFLCSKGG-RAPV----------- 354 (453)
Q Consensus 292 ~nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~----tV~~~~~~~~~~~~dy~LLCpdGs-r~pi----------- 354 (453)
.|- ...++.-|..|..|++|.... .+.+.... .+.++|--.+. |.++
T Consensus 180 -----------~~~g~~~a~~aL~~G~vDa~~~~~~~p~~~~~~~~~~-----g~lr~L~v~~~~r~~~~p~~Pt~~~~~ 243 (327)
T 4ddd_A 180 -----------AELKSSEQAQALCDNKIDVMVDVIGHPNASIQEASAT-----CDIKFIPLDDRLIDDLHAKYPYYQKDI 243 (327)
T ss_dssp -----------ECCCHHHHHHHHHTTSCSBEEEEECSSCHHHHHHHHH-----SCEEECCCCHHHHHHHHHHCTTCEEEE
T ss_pred -----------hcCCHHHHHHHHHcCCCCEEEEccCCCcHHHHHHHhc-----CCeEEEeCCHHHHHHHHHhCCCceEEE
Confidence 122 445788899999999998543 25553332 34555544431 1110
Q ss_pred ---CCCcCCccc----ccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcC
Q psy11919 355 ---SKAADCNLG----VVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSK 397 (453)
Q Consensus 355 ---~~~~~Cnl~----~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~ 397 (453)
..|. .+. ...|.+++++++.+++...++.+.+.+-.+.|..
T Consensus 244 ip~g~~~--~~~dv~t~~~~~~l~ap~~~p~~vv~~l~~a~~e~~~~l~~ 291 (327)
T 4ddd_A 244 ISGGLYN--DSPDIQTVSVKASLVTTTELSNDLAYKIVKSIATHLRELRS 291 (327)
T ss_dssp ECSCSSS--SCCCEEEEEEEEEEEEETTSCHHHHHHHHHHHHHTHHHHHT
T ss_pred eCCCCCC--CCCCcceeeeeeEEEEcCCCCHHHHHHHHHHHHhCHHHHHH
Confidence 1121 112 4468899999999986666666666555555543
No 23
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=89.12 E-value=1.1 Score=43.66 Aligned_cols=82 Identities=10% Similarity=0.065 Sum_probs=54.1
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCC-CccCC-CC---cCC---cccccCCceEEEcCCCC
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGG-RAPVS-KA---ADC---NLGVVPPHMVVTSNSKS 377 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGs-r~pi~-~~---~~C---nl~~vP~~aVvtr~~~~ 377 (453)
...|+.-|..|..|++|.....+..+... .+.++|.-.+. |.+.- +. ..- .+....|.+++++++.+
T Consensus 165 ~~~a~~al~~G~vD~~~~~~~~~~~~i~~-----g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p 239 (301)
T 2qpq_A 165 CGPALNDVLGSQIGLAVVTASSAIPFIKA-----GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATP 239 (301)
T ss_dssp HHHHHHHHHTTSSSCEEEEHHHHHHHHHT-----TSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCC
T ss_pred hHHHHHHHHCCCccEEEEcHHHHHHHHhc-----CCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCC
Confidence 44588999999999999998888775443 45777765442 22221 11 000 02334588999999998
Q ss_pred hhHHHHHHHHHHHHH
Q psy11919 378 NMEIDIIKHAIITAA 392 (453)
Q Consensus 378 ~~~~~~I~~lL~~l~ 392 (453)
++.++++...|.++.
T Consensus 240 ~~vv~~l~~al~~~~ 254 (301)
T 2qpq_A 240 MAVRQKLYDGIAKVM 254 (301)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877777777776653
No 24
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=87.07 E-value=1.4 Score=43.49 Aligned_cols=134 Identities=11% Similarity=0.098 Sum_probs=80.8
Q ss_pred EEEEEEEcCCCCCCccccCC------C--CccCCCCCCCCcchHHHHHHHH-cCccCCCCCCccccccccCCCCCccCCC
Q psy11919 213 LAVAVVKKDSKVQNFEDLRG------L--KSCHSGYMDSSGWVAPVYHLLE-KGLIKNDVCPYYKGVEQFFSGGSCVPGL 283 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkG------K--KsCHtG~g~taGW~~Pv~~L~~-~g~I~~~~C~~~kavs~FFs~~SC~PG~ 283 (453)
..|.||++++++++++||.+ + +.-.+|.| ++..+-...+.+ .| +. +. . +
T Consensus 112 ~~~lvv~~ds~~~sl~dL~~~ak~~p~~~~~g~~g~G--s~~hl~~~~l~~~~G-i~-------------~~-~--V--- 169 (312)
T 2f5x_A 112 PMTIIARGDFPPNNIKELAEYVKKNADKISLANAGIG--AASHLCGTMLVEALG-VN-------------LL-T--I--- 169 (312)
T ss_dssp EEEEEECTTCSCCSHHHHHHHHHHHGGGCEEEESSTT--SHHHHHHHHHHHHHT-CC-------------CE-E--E---
T ss_pred cEEEEEeCCCCCCCHHHHHHHHHhCCCceEEeCCCCC--cHHHHHHHHHHHHHC-CC-------------eE-E--e---
Confidence 67889999999999999975 2 33344444 333333333333 23 21 00 0 1
Q ss_pred CcccCCCCccccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCC-CccC-CCC---
Q psy11919 284 EEKEKSESPSLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGG-RAPV-SKA--- 357 (453)
Q Consensus 284 ~~~~~n~~~nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGs-r~pi-~~~--- 357 (453)
+|. ..-|+.-|..|..|++|.....+..+... .+.++|.-.+. |.+. .+.
T Consensus 170 -------------------py~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~-----g~lr~Lav~~~~r~~~~pdvPt~ 225 (312)
T 2f5x_A 170 -------------------PYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITS-----GKVKAYAVTSLKRVPTLPDLPTM 225 (312)
T ss_dssp -------------------ECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHT-----TSSEEEEECSSSCCTTSTTSCBT
T ss_pred -------------------ccCChHHHHHHHHcCCccEEEechHHHHHHHHc-----CCeEEEEEcCccchhhcCCCCCH
Confidence 122 34588999999999999998888775543 45667764432 2221 111
Q ss_pred -cCC--cccccCCceEEEcCCCChhHHHHHHHHHHHHH
Q psy11919 358 -ADC--NLGVVPPHMVVTSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 358 -~~C--nl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~ 392 (453)
+.- .+....|.+++++++.+++.++++...|.++.
T Consensus 226 ~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~ 263 (312)
T 2f5x_A 226 DESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGL 263 (312)
T ss_dssp TTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 000 12334578999999998877777777776653
No 25
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=87.06 E-value=5.3 Score=35.21 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=68.2
Q ss_pred EEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCcc
Q psy11919 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPS 293 (453)
Q Consensus 214 aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~n 293 (453)
.+.|+++++.+.+++||+||+.+-. .|+.. -..+.+ .+ + . .+.
T Consensus 100 ~~~~~~~~~~i~~~~dL~g~~i~v~-----~g~~~-~~~l~~---~~--~---~-~~~---------------------- 142 (242)
T 3del_B 100 HLVLVFKGENKHPLPLTQYRSVAVQ-----TGTYQ-EAYLQS---LS--E---V-HIR---------------------- 142 (242)
T ss_dssp EEEEEEESCCSCCCCGGGSSCEEEE-----TTSHH-HHHHHH---ST--T---C-CEE----------------------
T ss_pred eEEEEeCCCCCCCHHHhCCCEEEEE-----cCcHH-HHHHHh---CC--C---c-eEE----------------------
Confidence 4677888888999999999997642 33432 122222 10 0 0 000
Q ss_pred ccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCC---ce
Q psy11919 294 LEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPP---HM 369 (453)
Q Consensus 294 LC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~---~a 369 (453)
.|. ...+++-|..|..|++++....+...... . .+++++-. + +...++ -+
T Consensus 143 ---------~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~--~--~~~~~~~~-----~--------~~~~~~~~~~~ 196 (242)
T 3del_B 143 ---------SFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKD--F--PALSTATI-----D--------LPEDQWVLGYG 196 (242)
T ss_dssp ---------EESSHHHHHHHHHTTSSSEEEECHHHHHHHGGG--C--TTEEEEEE-----E--------CCGGGCEEEEE
T ss_pred ---------EECCHHHHHHHHHcCCCCEEEecHHHHHHHHHh--C--CCeEEecC-----c--------cCcccccceEE
Confidence 111 56789999999999999988777764432 1 23666521 1 111221 45
Q ss_pred EEEcCCCChhHHHHHHHHHHHHH
Q psy11919 370 VVTSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 370 Vvtr~~~~~~~~~~I~~lL~~l~ 392 (453)
++++++ ....++.|..+|.++.
T Consensus 197 ~~~~k~-~~~l~~~l~~~l~~l~ 218 (242)
T 3del_B 197 IGVASD-RPALALKIEAAVQEIR 218 (242)
T ss_dssp EEEETT-CHHHHHHHHHHHHHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHHH
Confidence 667776 4445667777776664
No 26
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=86.56 E-value=1.1 Score=44.24 Aligned_cols=136 Identities=12% Similarity=0.031 Sum_probs=80.0
Q ss_pred EEEEEEEcCCCCCCccccCCC------CccCCCCCCCCcchHHHHHHHH-cCccCCCCCCccccccccCCCCCccCCCCc
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGL------KSCHSGYMDSSGWVAPVYHLLE-KGLIKNDVCPYYKGVEQFFSGGSCVPGLEE 285 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGK------KsCHtG~g~taGW~~Pv~~L~~-~g~I~~~~C~~~kavs~FFs~~SC~PG~~~ 285 (453)
..|.||++++++++++||.++ |.-....+.+++..+-...+.+ .| +. +. . +
T Consensus 116 ~~~lvv~~ds~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G-i~-------------~~-~--V----- 173 (314)
T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATG-TD-------------IV-H--V----- 173 (314)
T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHT-CC-------------CE-E--E-----
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhC-CC-------------eE-E--c-----
Confidence 567889999999999999762 2322222222333443333333 23 11 00 0 1
Q ss_pred ccCCCCccccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCC-CccC-CCC---cC
Q psy11919 286 KEKSESPSLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGG-RAPV-SKA---AD 359 (453)
Q Consensus 286 ~~~n~~~nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGs-r~pi-~~~---~~ 359 (453)
+|. ..-|+.-|..|..|++|.....+..+... .+.++|.-.+. |.+. .+. ..
T Consensus 174 -----------------py~G~~~a~~al~~G~vD~~~~~~~~~~~~i~~-----g~lr~Lav~~~~r~~~~pdvPt~~e 231 (314)
T 2dvz_A 174 -----------------PYKGSGPAVADAVGGQIELIFDNLPSSMPQIQA-----GKLRAMAIAWPTRIDAIKDVPTFAD 231 (314)
T ss_dssp -----------------ECSSHHHHHHHHHHTSSSEEEEEHHHHHHHHHT-----TSSEEEEEESSSCCGGGTTSCBTTT
T ss_pred -----------------ccCCHHHHHHHHHcCCceEEEEcHHHHHHHHHc-----CCEEEEEecCccccccCCCCCCHHh
Confidence 122 34588999999999999998888775543 34566654332 2221 110 00
Q ss_pred -C--cccccCCceEEEcCCCChhHHHHHHHHHHHHH
Q psy11919 360 -C--NLGVVPPHMVVTSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 360 -C--nl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~ 392 (453)
- .+....|.+++++++.+++.++++...|.++.
T Consensus 232 ~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~ 267 (314)
T 2dvz_A 232 AGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVAL 267 (314)
T ss_dssp TTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred cCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 0 12334588999999998877777777776653
No 27
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=86.00 E-value=4.3 Score=35.71 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=44.4
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHH
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~ 385 (453)
...+++-|..|..|++++....+........ .++++++-... ...|...++.+++. ...++.|.
T Consensus 151 ~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------~~~~~~~~~~~k~~-~~l~~~ln 214 (246)
T 4eq9_A 151 FQQIMVRLSDGQFDYKIFDKIGVETVIKNQG--LDNLKVIELPS-------------DQQPYVYPLLAQGQ-DELKSFVD 214 (246)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHHHT--CTTEEEEECCC-------------SSCCEECCEEETTC-HHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEecHHHHHHHHHhCC--CCCceEecCcC-------------CCCCcEEEEEcCCC-HHHHHHHH
Confidence 5678999999999999999888776544322 24577663211 11232345556554 34556777
Q ss_pred HHHHHHH
Q psy11919 386 HAIITAA 392 (453)
Q Consensus 386 ~lL~~l~ 392 (453)
+.|.++.
T Consensus 215 ~~l~~l~ 221 (246)
T 4eq9_A 215 KRIKELY 221 (246)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776663
No 28
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=84.82 E-value=5 Score=35.42 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=69.0
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCc
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESP 292 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~ 292 (453)
..+.|+++++++.+++||+|||.+-. .|+... ..+.+. .+ .. .+ .
T Consensus 91 ~~~~~~~~~~~~~~~~dL~g~~i~~~-----~g~~~~-~~~~~~--~~-----~~-~~-~-------------------- 135 (237)
T 3kzg_A 91 NSQYITTVDSKISTFDDLHGKKIGVR-----KGTPYA-RQVLSE--NR-----NN-QV-I-------------------- 135 (237)
T ss_dssp EEEEEEETTCSCCSGGGGTTCEEEEE-----TTSTHH-HHHHHT--CS-----SC-EE-E--------------------
T ss_pred ceEEEEECCCCCCCHHHhCCCEEEEe-----cCCHHH-HHHHHh--CC-----CC-cE-E--------------------
Confidence 56778899988999999999987653 233321 122221 10 00 00 0
Q ss_pred cccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCC------CCceEEecCCCCCccCCCCcCCccccc
Q psy11919 293 SLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFK------VDEIEFLCSKGGRAPVSKAADCNLGVV 365 (453)
Q Consensus 293 nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~------~~dy~LLCpdGsr~pi~~~~~Cnl~~v 365 (453)
.|. ...+++-|..|..|++++....+...... .. ..+++++-. ++ ...
T Consensus 136 ----------~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~-----~~--------~~~ 190 (237)
T 3kzg_A 136 ----------FYELIQDMLLGLSNNQVDASLMDYEAAKYWMAS--EPYAYKLIGKKYKLIGK-----KI--------SIG 190 (237)
T ss_dssp ----------EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTT--SSTTHHHHCCSEEEEEE-----EE--------ECT
T ss_pred ----------EeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHh--CCccccccCCceEEecC-----cc--------ccC
Confidence 112 56789999999999999988777764333 22 346776632 11 011
Q ss_pred CCceEEEcCCCChhHHHHHHHHHHHHH
Q psy11919 366 PPHMVVTSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 366 P~~aVvtr~~~~~~~~~~I~~lL~~l~ 392 (453)
..-.++++++ ....++.|..+|.++.
T Consensus 191 ~~~~~~~~k~-~~~l~~~l~~~l~~l~ 216 (237)
T 3kzg_A 191 EGYSIMANPD-QFVLIKKINKILLEME 216 (237)
T ss_dssp TCBCCEECGG-GHHHHHHHHHHHHHHH
T ss_pred ccEEEEEcCC-CHHHHHHHHHHHHHHH
Confidence 2234555655 3445567777776664
No 29
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=84.80 E-value=2.4 Score=40.76 Aligned_cols=162 Identities=6% Similarity=-0.141 Sum_probs=83.2
Q ss_pred hceeccCCCcccccccccccccccccccccCCCCcEEEEEEEEcCCCCCCcccc-CCCCccCCCCCCCCcchHHHHHHHH
Q psy11919 177 QDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDL-RGLKSCHSGYMDSSGWVAPVYHLLE 255 (453)
Q Consensus 177 AD~~v~daed~~~A~k~~l~~~~pi~~E~y~~~~~~~aVAVVkk~s~~~sl~dL-kGKKsCHtG~g~taGW~~Pv~~L~~ 255 (453)
.|++.........++... .+++.+.. .+ ....+.||++++++.+++|| +|||...+..+++. ..+.-..|.+
T Consensus 104 ~D~~~~~~~~~~~~~~~g-~~~~~v~~-~~----~~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~-~~~~~~~l~~ 176 (341)
T 3un6_A 104 IDGASTLIELAMKSKQKG-SNIKAVAL-GH----HEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTH-YLLLEELRKQ 176 (341)
T ss_dssp SSEEEEEHHHHHHHHHTT-CCCEEEEE-SC----EECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHH-HHHHHHHHHH
T ss_pred CCEEecchHHHHHHHHCC-CCeEEEee-cC----CCceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHH-HHHHHHHHHH
Confidence 677766554433333222 13333332 11 12334578899999999999 99999987654322 2232234555
Q ss_pred cCccCCCCCCccccccccCCCCCccCCCCcccCCCCccccccccCCccccccchhhhhhcCCCcEEEEechhhHHHHhcC
Q psy11919 256 KGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEG 335 (453)
Q Consensus 256 ~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~ 335 (453)
.|+-+ .+ ++-+ .++ ...++.-|..|..|++++...........
T Consensus 177 ~Gl~~-~d---v~~~--~~~------------------------------~~~~~~al~~G~vDa~~~~~p~~~~~~~~- 219 (341)
T 3un6_A 177 LKIKP-GH---FSYH--EMS------------------------------PAEMPAALSEHRITGYSVAEPFGALGEKL- 219 (341)
T ss_dssp TTCCT-TS---EEEE--ECC------------------------------GGGHHHHHHTTSCSEEEEETTHHHHHHHS-
T ss_pred cCCCH-HH---eEEE--EcC------------------------------hHHHHHHHHcCCCCEEEecCCHHHHHHhc-
Confidence 55322 11 1000 001 23467889999999999876655432221
Q ss_pred CCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCC---hhHHHHHHHHHHHHHHHhc
Q psy11919 336 IFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKS---NMEIDIIKHAIITAADLFS 396 (453)
Q Consensus 336 ~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~---~~~~~~I~~lL~~l~~lFG 396 (453)
... +++-..+ .+ |...|...+++|++.. .+..+.+.+.+.+..++.-
T Consensus 220 ---~~~-~~l~~~~---~~-------~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~ 269 (341)
T 3un6_A 220 ---GKG-KTLKHGD---DV-------IPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMN 269 (341)
T ss_dssp ---SCC-EEEEEGG---GT-------STTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred ---CCe-EEEEecc---cc-------CCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 111 3332111 01 1223667788887643 2233445555555555443
No 30
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=83.64 E-value=0.52 Score=44.37 Aligned_cols=74 Identities=12% Similarity=-0.026 Sum_probs=44.2
Q ss_pred hceeccCCCcccccccccccccccccccccCCCCcEEEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHc
Q psy11919 177 QDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEK 256 (453)
Q Consensus 177 AD~~v~daed~~~A~k~~l~~~~pi~~E~y~~~~~~~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~ 256 (453)
+|++......+..++.... ++..+ .-.+... ..+.||++++++.+++||+|||.+.++.+ .+..+....|.+.
T Consensus 56 ~D~~~~~~~~~~~~~~~g~-~~~~~-~~~~~~~---~~~l~~~~~s~i~s~~DL~Gk~i~~~~~~--~~~~~~~~~l~~~ 128 (302)
T 3ix1_A 56 IPLALSYQPDVILARSKDL-PVVSV-ASVVRSP---LNHVMFLAEQDFDSPADLVGLTVGYPGIP--VNEPILKTMVEAA 128 (302)
T ss_dssp CSEEEECHHHHHHHHHTTC-CEEEE-EEEECSC---CEEEEEEGGGCCSSGGGGTTSEEEECSCT--THHHHHHHHHHHT
T ss_pred CCEEecCHHHHHHHHHCCC-CEEEE-EEEeccC---CEEEEEECCCCCCChHHcCCCEEEeCCCc--chHHHHHHHHHHc
Confidence 8888876545444443322 22222 2222211 34567788899999999999999877653 3455544555555
Q ss_pred C
Q psy11919 257 G 257 (453)
Q Consensus 257 g 257 (453)
|
T Consensus 129 G 129 (302)
T 3ix1_A 129 G 129 (302)
T ss_dssp T
T ss_pred C
Confidence 5
No 31
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=83.07 E-value=5.7 Score=36.14 Aligned_cols=120 Identities=16% Similarity=0.115 Sum_probs=68.4
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHc-CccCCCCCCccccccccCCCCCccCCCCcccCCCC
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEK-GLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSES 291 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~-g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~ 291 (453)
..+.|+++++++.+++||+|||.+-. .|+... ..+.+. + . .- .+ ..+. .
T Consensus 128 ~~~l~~~~~~~i~~~~dL~g~~i~~~-----~g~~~~-~~l~~~~~--~--~~----~i-~~~~-~-------------- 177 (272)
T 2pvu_A 128 TQVILVKQGSPVKNALDLKGKTIGVQ-----NATTGQ-EAAEKLFG--K--GP----HI-KKFE-T-------------- 177 (272)
T ss_dssp CEEEEEETTCCCCSGGGGTTSCEEEE-----TTSHHH-HHHHHHHC--S--ST----TE-EEES-S--------------
T ss_pred ceEEEEECCCCCCCHHHhCCCeEEEE-----cCchHH-HHHHHhcC--C--CC----eE-EEcC-C--------------
Confidence 45678899988999999999997643 233332 222221 1 0 00 00 0111 0
Q ss_pred ccccccccCCccccccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEE
Q psy11919 292 PSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVV 371 (453)
Q Consensus 292 ~nLC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVv 371 (453)
...+++-|..|..|++++....+...... ....+++++-+-. .+ ......++
T Consensus 178 --------------~~~~~~~l~~G~vDa~~~~~~~~~~~~~~--~~~~~l~~~~~~~------~~------~~~~~~~~ 229 (272)
T 2pvu_A 178 --------------TVVAIMELLNGGVDAVITDNAVANEYVKN--NPNKKLQVIEDPK------NF------ASEYYGMI 229 (272)
T ss_dssp --------------HHHHHHHHHTTSCSEEEEEHHHHHHHHHH--CGGGCEEEECCTT------TS------CCEEECCE
T ss_pred --------------HHHHHHHHHcCCccEEEeCHHHHHHHHHh--CCCCceEEecccc------cc------CCceEEEE
Confidence 56789999999999999988777654433 1122466652110 00 11223455
Q ss_pred EcCCCChhHHHHHHHHHHHHH
Q psy11919 372 TSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 372 tr~~~~~~~~~~I~~lL~~l~ 392 (453)
++++ ...++.|..+|.++.
T Consensus 230 ~~k~--~~l~~~l~~~l~~l~ 248 (272)
T 2pvu_A 230 FPKN--SELKAKVDEALKNVI 248 (272)
T ss_dssp EETT--CTTHHHHHHHHHHHH
T ss_pred EeCC--HHHHHHHHHHHHHHH
Confidence 6666 345567777776654
No 32
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=82.25 E-value=8.7 Score=35.55 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=68.7
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCc
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESP 292 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~ 292 (453)
..+.|+++++++.+++||+|||.+-+ .|+.. ...|.+.+ + .+ ..+. .
T Consensus 145 ~~~l~~~~~~~i~s~~dL~G~~v~v~-----~g~~~-~~~l~~~~-~---------~~-~~~~-~--------------- 191 (283)
T 2yln_A 145 GAVLVAHNDSNIKSIADIKGVKTAQS-----LTSNY-GEKAKAAG-A---------QL-VPVD-G--------------- 191 (283)
T ss_dssp CEEEEEETTCSCCSGGGCTTSEEEEC-----TTSHH-HHHHHHTT-C---------EE-EECS-S---------------
T ss_pred cEEEEEECCCCCCCHHHhCCCEEEEe-----cCchH-HHHHHHcC-C---------eE-EEeC-C---------------
Confidence 44678889988999999999998742 23332 22333321 0 00 0111 0
Q ss_pred cccccccCCccccccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEec-CCCCCccCCCCcCCcccccCCceEE
Q psy11919 293 SLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLC-SKGGRAPVSKAADCNLGVVPPHMVV 371 (453)
Q Consensus 293 nLC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLC-pdGsr~pi~~~~~Cnl~~vP~~aVv 371 (453)
...+++-|.+|..|++++....+...... ....+++++- . ++. ......++
T Consensus 192 -------------~~~~~~~l~~g~vDa~i~~~~~~~~~~~~--~~~~~l~~~~~~-----~~~--------~~~~~~i~ 243 (283)
T 2yln_A 192 -------------LAQSLTLIEQKRADATLNDELAVLDYLKK--NPNAGVKIVWSA-----PAD--------EKVGSGLI 243 (283)
T ss_dssp -------------HHHHHHHHHTTSCCEEEEEHHHHHHHHHH--STTSSEEEEEEC-----CGG--------GCEEECCE
T ss_pred -------------HHHHHHHHHcCCCCEEEecHHHHHHHHHh--CCCCcEEEccCc-----ccC--------CcccEEEE
Confidence 45688999999999999988777654433 1223577763 1 111 01123456
Q ss_pred EcCCCChhHHHHHHHHHHHHH
Q psy11919 372 TSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 372 tr~~~~~~~~~~I~~lL~~l~ 392 (453)
++++ ....++.|..+|.++.
T Consensus 244 ~~k~-~~~l~~~i~~al~~l~ 263 (283)
T 2yln_A 244 VNKG-NDEAVAKFSTAINELK 263 (283)
T ss_dssp EESS-CHHHHHHHHHHHHHHH
T ss_pred EeCC-CHHHHHHHHHHHHHHH
Confidence 6666 3444567777776664
No 33
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=80.79 E-value=13 Score=32.97 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=44.8
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHH
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~ 385 (453)
...+++-|..|..|++++....+...... ..+++++-+ ++... .....-.++++++ ....++.+.
T Consensus 168 ~~~~~~~l~~G~vDa~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~-----~~~~~~~~~~~k~-~~~l~~~l~ 232 (268)
T 3qax_A 168 TLEVIMEVRYGKSPVAVLEPSVGRVVLKD----FPNLVATRL-----ELPPE-----CWVLGCGLGVAKD-RPEEIQTIQ 232 (268)
T ss_dssp HHHHHHHHHTTSSSEEEECHHHHHHHGGG----CTTEEEEEE-----ECCGG-----GCBCCEEEEECTT-CHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEecHHHHHHHHHh----CCCcEEecC-----ccCcc-----cccccEEEEEeCC-CHHHHHHHH
Confidence 56789999999999999988877764432 123666532 11110 1122246777776 444567777
Q ss_pred HHHHHHH
Q psy11919 386 HAIITAA 392 (453)
Q Consensus 386 ~lL~~l~ 392 (453)
+.|.++.
T Consensus 233 ~~l~~l~ 239 (268)
T 3qax_A 233 QAITDLK 239 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 34
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=80.71 E-value=6.4 Score=36.53 Aligned_cols=118 Identities=11% Similarity=0.019 Sum_probs=67.7
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCc
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESP 292 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~ 292 (453)
..+.||++++++.+++||+|||.+-. .|+.. -..+.+. .+ + . .+. .
T Consensus 145 ~~~l~~~~~~~i~sl~dL~gk~v~~~-----~g~~~-~~~l~~~--~~--~---~-~~~-~------------------- 190 (291)
T 2yjp_A 145 ALGVVSPKNKPITDMAQLKDQTLLVN-----KGTTA-DAFFTKS--HP--E---V-KLL-K------------------- 190 (291)
T ss_dssp CEEEEEETTSCCCSGGGGTTSEEEEE-----TTSHH-HHHHHHH--CT--T---S-EEE-E-------------------
T ss_pred ceEEEEeCCCCCCCHHHhCCCEEEEe-----cCCcH-HHHHHHh--CC--C---c-eEE-E-------------------
Confidence 45668888889999999999998753 23322 2223221 10 0 0 000 0
Q ss_pred cccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEE
Q psy11919 293 SLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVV 371 (453)
Q Consensus 293 nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVv 371 (453)
+. ...+++-|..|..|++++....+...... . .+++++=+ ++. ..|.-.++
T Consensus 191 -----------~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~--~--~~~~~~~~-----~~~--------~~~~~~~~ 242 (291)
T 2yjp_A 191 -----------FDQNTETFDALKDGRGVALAHDNALLWAWAKE--N--PNFEVAIG-----NLG--------PAEFIAPA 242 (291)
T ss_dssp -----------ESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHH--C--TTEEEEEC-----CSS--------SCEEECCE
T ss_pred -----------eCCHHHHHHHHHcCCccEEEecHHHHHHHHHh--C--CCeEEcCC-----ccc--------CCcceEEE
Confidence 11 56788999999999999988777664433 1 23766521 111 11221455
Q ss_pred EcCCCChhHHHHHHHHHHHHHH
Q psy11919 372 TSNSKSNMEIDIIKHAIITAAD 393 (453)
Q Consensus 372 tr~~~~~~~~~~I~~lL~~l~~ 393 (453)
++++ ....++.|...|.++.+
T Consensus 243 ~~k~-~~~l~~~l~~al~~l~~ 263 (291)
T 2yjp_A 243 VQKG-NADLLNWVNGEIAAMKK 263 (291)
T ss_dssp EETT-CHHHHHHHHHHHHHHHH
T ss_pred EeCC-CHHHHHHHHHHHHHHHh
Confidence 6665 33455677777766543
No 35
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=78.44 E-value=12 Score=32.15 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=70.4
Q ss_pred EEEEEEEcCCCC-CCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCC
Q psy11919 213 LAVAVVKKDSKV-QNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSES 291 (453)
Q Consensus 213 ~aVAVVkk~s~~-~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~ 291 (453)
..+.|+++++++ .+++||+||+.+-. .|+.. -..+.+.. + .. .+..
T Consensus 89 ~~~l~~~~~~~~~~~~~dL~g~~v~~~-----~g~~~-~~~l~~~~--~-------~~-~~~~----------------- 135 (227)
T 3tql_A 89 SVSFIADKNTPLTLSKQGLKGKIIGVQ-----GGTTF-DSYLQDSF--G-------NS-ITIQ----------------- 135 (227)
T ss_dssp EEEEEEETTSCCCCSTTTTTTCEEEEE-----TTSHH-HHHHHHHH--G-------GG-SEEE-----------------
T ss_pred ceEEEEeCCCCCCCCHHHhCCCEEEEE-----ecccH-HHHHHHhc--c-------cc-ceEE-----------------
Confidence 567788888877 79999999998643 33333 22222211 0 00 0000
Q ss_pred ccccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceE
Q psy11919 292 PSLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMV 370 (453)
Q Consensus 292 ~nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aV 370 (453)
.|. ...+++-|..|..|++++....+...... ....+++++-+. +... .+...+ -++
T Consensus 136 -----------~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~---~~~~~~-~~~ 193 (227)
T 3tql_A 136 -----------RYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQ--NGRREYVLIGKP-----VNDP---NYFGKG-VGI 193 (227)
T ss_dssp -----------EESSHHHHHHHHTTTSSSEEESCHHHHHHHHHH--TTCCSEEEEEEE-----CCCG---GGCCSC-BCC
T ss_pred -----------EcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHh--CCCCCEEEecCc-----ccCc---cccccc-eEE
Confidence 111 56789999999999999998887764443 223457766321 1110 000111 245
Q ss_pred EEcCCCChhHHHHHHHHHHHHHH
Q psy11919 371 VTSNSKSNMEIDIIKHAIITAAD 393 (453)
Q Consensus 371 vtr~~~~~~~~~~I~~lL~~l~~ 393 (453)
+.+++ ....++.|.+.|.++.+
T Consensus 194 ~~~~~-~~~l~~~l~~~l~~l~~ 215 (227)
T 3tql_A 194 AVKKG-NQALLLKLNKALAAIKA 215 (227)
T ss_dssp EEETT-CHHHHHHHHHHHHHHHH
T ss_pred EEcCC-CHHHHHHHHHHHHHHHh
Confidence 55555 34456777777777654
No 36
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=74.47 E-value=22 Score=30.65 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=68.3
Q ss_pred EEEEEEEcCCC-CCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCC
Q psy11919 213 LAVAVVKKDSK-VQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSES 291 (453)
Q Consensus 213 ~aVAVVkk~s~-~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~ 291 (453)
..+.|++++++ +.+++||+||+.+-. .|+.. -..|.+.+ . .. +..
T Consensus 97 ~~~~~~~~~~~~~~~~~dL~g~~i~~~-----~g~~~-~~~l~~~~-~------~~----~~~----------------- 142 (234)
T 3h7m_A 97 YHAIFARRDSPPAAGLEDLRGRKVALH-----RDGIM-HEYLAERG-Y------GK----DLV----------------- 142 (234)
T ss_dssp EEEEEEESSSCCCSSGGGGTTSCEEEE-----TTSHH-HHHHHTTT-C------GG----GEE-----------------
T ss_pred ceEEEEECCCCCCCCHHHhCCCEEEEE-----eCchH-HHHHHhcC-C------Cc----eEE-----------------
Confidence 55677888877 899999999987653 33332 22222211 0 00 000
Q ss_pred ccccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceE
Q psy11919 292 PSLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMV 370 (453)
Q Consensus 292 ~nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aV 370 (453)
.+. +..+++-|..|..|++++....+........ ..++..+-+ + +...| -.+
T Consensus 143 -----------~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~--~~~~~~~~~-----~--------~~~~~-~~~ 195 (234)
T 3h7m_A 143 -----------LTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENR--LTNLVPVAR-----S--------IAAQR-YGY 195 (234)
T ss_dssp -----------EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTT--CTTEEEEEE-----E--------EEEEE-EEE
T ss_pred -----------EeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcC--CCceEEecc-----c--------cCCCc-eEE
Confidence 111 5678999999999999998877765444322 244555421 0 11122 245
Q ss_pred EEcCCCChhHHHHHHHHHHHHHH
Q psy11919 371 VTSNSKSNMEIDIIKHAIITAAD 393 (453)
Q Consensus 371 vtr~~~~~~~~~~I~~lL~~l~~ 393 (453)
+.+++. ...++.|...|.++.+
T Consensus 196 ~~~~~~-~~l~~~l~~~l~~l~~ 217 (234)
T 3h7m_A 196 AVRQGD-AELLARFSEGLAILRK 217 (234)
T ss_dssp EEETTC-HHHHHHHHHHHHHHHH
T ss_pred EEeCCC-HHHHHHHHHHHHHHHH
Confidence 555553 4455677777776653
No 37
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=73.63 E-value=15 Score=32.68 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=40.9
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHH
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~ 385 (453)
+..+++-|..|..|++++....+...... ..++.+.=. +... ....| -.++++++. ...++.|.
T Consensus 180 ~~~~~~~l~~g~vDa~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~-----~~~~~-~~~~~~~~~-~~l~~~l~ 243 (269)
T 4i62_A 180 NGNLITDLKSGQVDAVIFEEPVAKGFVEN----NPDLAIADL-----NFEK-----EQDDS-YAVAMKKDS-KELKEAVD 243 (269)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHH----CTTEEECSC-----CCCC------CCCE-ECCEEESSC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEeChHHHHHHHHh----CCCCeEEee-----ccCC-----Ccccc-eEEEEeCCC-HHHHHHHH
Confidence 56789999999999999998887664443 124444311 1110 01122 234455553 33556777
Q ss_pred HHHHHHH
Q psy11919 386 HAIITAA 392 (453)
Q Consensus 386 ~lL~~l~ 392 (453)
+.|.++.
T Consensus 244 ~~l~~l~ 250 (269)
T 4i62_A 244 KTIQKLK 250 (269)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776664
No 38
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=72.95 E-value=19 Score=31.97 Aligned_cols=69 Identities=9% Similarity=0.069 Sum_probs=43.0
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHH
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~ 385 (453)
...+++-|..|..|++++....+...... ....+++++=+ + +...+ -.++++++.. .++.|.
T Consensus 160 ~~~~~~~L~~GrvDa~i~~~~~~~~~~~~--~~~~~l~~~~~-----~--------~~~~~-~~~~~~k~~~--l~~~l~ 221 (249)
T 4f3p_A 160 IDQAYLALEAGRVDAAMHDTPNVLFFVNN--EGKGRVKVAGA-----P--------VSGDK-YGIGFPKGSP--LVAKVN 221 (249)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHT--TTTTTEEEEEE-----E--------EEEEE-EEEEEETTCT--HHHHHH
T ss_pred HHHHHHHHHcCCeeEEEeCcHHHHHHHHh--CCCCceEEecC-----C--------CCCcc-EEEEEcCCch--HHHHHH
Confidence 56789999999999999998877764433 22245665421 1 11122 2455566553 567777
Q ss_pred HHHHHHH
Q psy11919 386 HAIITAA 392 (453)
Q Consensus 386 ~lL~~l~ 392 (453)
..|.++.
T Consensus 222 ~~l~~l~ 228 (249)
T 4f3p_A 222 AELARMK 228 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776664
No 39
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=72.68 E-value=23 Score=30.47 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=42.0
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHH
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~ 385 (453)
...+++-|..|..|++++....+...... . .+++++-+ ++.+.. +... ...++++++ ....++.|.
T Consensus 142 ~~~~~~~l~~grvDa~~~~~~~~~~~~~~--~--~~~~~~~~-----~~~~~~---~~~~-~~~~~~~~~-~~~l~~~l~ 207 (229)
T 2y7i_A 142 YLNAFTDLKNNRLEGVFGDVAAIGKWLKN--N--PDYAIMDE-----RASDPD---YYGK-GLGIAVRKD-NDALLQEIN 207 (229)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHHTT--C--TTEEECSC-----CBCCTT---TSCC-CBCCEECTT-CHHHHHHHH
T ss_pred HHHHHHHHHcCCcCEEEechHHHHHHHHh--C--CCeEEecc-----cccccc---cccc-ceEEEEeCC-CHHHHHHHH
Confidence 56789999999999999988777654332 2 26777622 111100 0001 334555665 344556677
Q ss_pred HHHHHHH
Q psy11919 386 HAIITAA 392 (453)
Q Consensus 386 ~lL~~l~ 392 (453)
+.|.++.
T Consensus 208 ~~l~~l~ 214 (229)
T 2y7i_A 208 AALDKVK 214 (229)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 40
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=69.95 E-value=3.3 Score=39.95 Aligned_cols=130 Identities=18% Similarity=0.082 Sum_probs=72.4
Q ss_pred EEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCccc
Q psy11919 215 VAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSL 294 (453)
Q Consensus 215 VAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~nL 294 (453)
+.||++++++.+++||+|||..-+ .+ +.+.......|.+.|+-. . .+ ++.. .+
T Consensus 102 ~lvv~~~s~i~s~~DLkGk~I~v~-~g-s~~~~~~~~~l~~~Gl~~-~------~v-~~v~----~~------------- 154 (348)
T 3uif_A 102 YLVVPKNSTAKSIKDLKGKKIALH-RG-RPWELAFSNLLQSEGLTF-K------DF-KIVN----VN------------- 154 (348)
T ss_dssp EEEEETTCCCCSGGGGTTSEEEEC-TT-STHHHHHHHHHHHTTCCG-G------GS-EEEC----CC-------------
T ss_pred EEEEECCCCCCCHHHcCCCEEEec-CC-ChHHHHHHHHHHHcCCCH-H------He-EEEE----CC-------------
Confidence 457788999999999999999875 33 444455455555555321 0 11 1111 00
Q ss_pred cccccCCccccccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcC
Q psy11919 295 EKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSN 374 (453)
Q Consensus 295 C~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~ 374 (453)
...++.-|..|..|++++....+ .. .. ....+++..... .. ....+...+++++
T Consensus 155 -----------~~~~~~al~~G~vDa~~~~~~~~-~~-~~----~g~~~~l~~~~~------~~---~~~~~~~~~~~~~ 208 (348)
T 3uif_A 155 -----------PQVGAAALASGTVDGFFSLFDSY-IL-ED----RGVGKIIWSTKT------AP---VDWKLMGGVWARN 208 (348)
T ss_dssp -----------HHHHHHHHHHTSSSEEEESTTHH-HH-HH----TTSEEEEEEGGG------SC---GGGSCCEEEEEEH
T ss_pred -----------HHHHHHHHHcCCCCEEEechHHH-HH-Hh----cCCcEEEEeccc------cC---CCCcceeEEEECH
Confidence 23467789999999998865443 21 11 122244432211 10 0134667888888
Q ss_pred CC---ChhHHHHHHHHHHHHHHHhcC
Q psy11919 375 SK---SNMEIDIIKHAIITAADLFSK 397 (453)
Q Consensus 375 ~~---~~~~~~~I~~lL~~l~~lFG~ 397 (453)
+. ..+..+.+.+.+.++.++.-.
T Consensus 209 ~~~~~~p~~~~~~~~a~~~a~~~~~~ 234 (348)
T 3uif_A 209 DFVKQNPEITQAIVTAYLKSVHWVAQ 234 (348)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHc
Confidence 64 333445566666666555443
No 41
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=69.52 E-value=34 Score=29.12 Aligned_cols=119 Identities=16% Similarity=0.089 Sum_probs=67.4
Q ss_pred EEEEEEEcCCC-CCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCC
Q psy11919 213 LAVAVVKKDSK-VQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSES 291 (453)
Q Consensus 213 ~aVAVVkk~s~-~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~ 291 (453)
..+.|++++++ +.+++||+|||.+-. .|+.. -..+.+. .+ + . .+. .
T Consensus 89 ~~~~~~~~~~~~i~~~~dL~g~~i~~~-----~g~~~-~~~l~~~--~~--~---~-~~~-~------------------ 135 (226)
T 1wdn_A 89 GLLVMVKANNNDVKSVKDLDGKVVAVK-----SGTGS-VDYAKAN--IK--T---K-DLR-Q------------------ 135 (226)
T ss_dssp EEEEEEETTCCSCSSSTTTTTCEEEEE-----TTSHH-HHHHHHH--CC--C---S-EEE-E------------------
T ss_pred ceEEEEeCCCCCCCCHHHhCCCEEEEE-----cCCcH-HHHHHHh--CC--C---c-eEE-E------------------
Confidence 55778888874 899999999997652 33333 2223221 00 0 0 000 0
Q ss_pred ccccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceE
Q psy11919 292 PSLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMV 370 (453)
Q Consensus 292 ~nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aV 370 (453)
+. ...+++-|..|..|++++....+...... ....+++++=+ + .......+
T Consensus 136 ------------~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~--~~~~~l~~~~~-----~---------~~~~~~~~ 187 (226)
T 1wdn_A 136 ------------FPNIDNAYMELGTNRADAVLHDTPNILYFIKT--AGNGQFKAVGD-----S---------LEAQQYGI 187 (226)
T ss_dssp ------------ESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHT--TTTTTEEEEEE-----E---------EEEEEEEE
T ss_pred ------------eCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHh--CCCCceEEecC-----C---------cccCceEE
Confidence 11 55688999999999999988776654333 11245665521 1 11123345
Q ss_pred EEcCCCChhHHHHHHHHHHHHHH
Q psy11919 371 VTSNSKSNMEIDIIKHAIITAAD 393 (453)
Q Consensus 371 vtr~~~~~~~~~~I~~lL~~l~~ 393 (453)
+++++. ...++.+.++|.++.+
T Consensus 188 ~~~k~~-~~l~~~~~~~l~~l~~ 209 (226)
T 1wdn_A 188 AFPKGS-DELRDKVNGALKTLRE 209 (226)
T ss_dssp EECTTC-HHHHHHHHHHHHHHHH
T ss_pred EEeCCC-HHHHHHHHHHHHHHHh
Confidence 666653 3445667777766543
No 42
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=69.42 E-value=3.7 Score=42.01 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=52.4
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHc-CccCCCCCCccccccccCCCCCccCCCCcccCCCC
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEK-GLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSES 291 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~-g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~ 291 (453)
..+.||+|++++.+++||+| ..-+--....++..++..+.++ |. . + .+.
T Consensus 17 ~~~vvV~kds~i~sl~DLkg--vgv~~~~~~~~~~~~~~~i~~~~g~-~------~-~~~-------------------- 66 (398)
T 2xxp_A 17 SLSVAVLADSEIENVTQLTS--VTAPTGTDNENIQKLLADIKSSQNT-D------L-TVN-------------------- 66 (398)
T ss_dssp EEEEEEETTCSCCSGGGCSE--EEECTTTSHHHHHHHHHHHHHHSCC-C------C-EEE--------------------
T ss_pred EEEEEEECCCCcCCHHHhcC--eeeECCCCHHHHHHHHHHHHHhhCC-c------c-eEE--------------------
Confidence 66778889999999999998 3333333556888888888765 21 0 0 111
Q ss_pred ccccccccCCcccc-ccchhhhhhcCCCcEEEEechh
Q psy11919 292 PSLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVK 327 (453)
Q Consensus 292 ~nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~t 327 (453)
.|. |..|+.-|.+|..|.+++....
T Consensus 67 -----------~y~~~~~a~~aL~nG~vDAiv~~~~~ 92 (398)
T 2xxp_A 67 -----------QSSSYLAAYKSLIAGETKAIVLNSVF 92 (398)
T ss_dssp -----------ECSSHHHHHHHHHTTSCSCEEEEHHH
T ss_pred -----------ecCCHHHHHHHHHcCCCCEEEEchHH
Confidence 233 7789999999999999996544
No 43
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=68.61 E-value=24 Score=32.00 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=65.9
Q ss_pred EEEEEEEcCC--CCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCC
Q psy11919 213 LAVAVVKKDS--KVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSE 290 (453)
Q Consensus 213 ~aVAVVkk~s--~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~ 290 (453)
..+.++++++ .+.+++||+|||.+- ..|+... ..|.+.+. .+. .+. .
T Consensus 111 ~~~l~~~~~~~~~i~~~~dL~g~~i~v-----~~g~~~~-~~l~~~~~----------~~~-~~~-~------------- 159 (271)
T 2iee_A 111 YGTAIVRKDDLSGIKTLKDLKGKKAAG-----AATTVYM-EVARKYGA----------KEV-IYD-N------------- 159 (271)
T ss_dssp EEEEEECTTTGGGCSSGGGGTTCEEES-----CTTSHHH-HHHHHTTC----------EEE-ECS-S-------------
T ss_pred CeEEEEECCCCCCCCCHHHhCCCEEEE-----eCCccHH-HHHHHcCC----------ceE-EeC-C-------------
Confidence 5567788887 589999999999765 3344332 23333221 010 111 0
Q ss_pred CccccccccCCccccccch--hhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCc
Q psy11919 291 SPSLEKICHNITTIFATNT--LQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPH 368 (453)
Q Consensus 291 ~~nLC~lC~g~d~Y~~~GA--lrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~ 368 (453)
...+ ++-|..|..| +++....+...... .....+++++-+ .+ +...|.
T Consensus 160 ---------------~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~-~~~~~~~~~~~~----~~--------~~~~~~- 209 (271)
T 2iee_A 160 ---------------ATNEQYLKDVANGRTD-VILNDYYLQTLALA-AFPDLNITIHPD----IK--------YMPNKQ- 209 (271)
T ss_dssp ---------------CCHHHHHHHHHHTSSC-EEEEEHHHHHHHHH-HCTTSSCEECSS----CC--------EEEEEE-
T ss_pred ---------------hhhHHHHHHHHcCCcc-EEeccHHHHHHHHH-hCCCCceEEecC----CC--------cccceE-
Confidence 4567 8999999999 88887766654441 122245666511 01 112222
Q ss_pred eEEEcCCCChhHHHHHHHHHHHHH
Q psy11919 369 MVVTSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 369 aVvtr~~~~~~~~~~I~~lL~~l~ 392 (453)
.++++++ ....++.|...|.++.
T Consensus 210 ~~~~~k~-~~~l~~~ln~al~~l~ 232 (271)
T 2iee_A 210 ALVMKKS-NAALQKKMNEALKEMS 232 (271)
T ss_dssp CCEEETT-CHHHHHHHHHHHHHHH
T ss_pred EEEEcCC-CHHHHHHHHHHHHHHH
Confidence 3445555 3445567777776664
No 44
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=67.76 E-value=5.5 Score=35.97 Aligned_cols=126 Identities=16% Similarity=0.074 Sum_probs=70.3
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCc
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESP 292 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~ 292 (453)
..+.|+++++.+.+++||+|||.+-. .|+.. ...|.+.+. .+.+.+. . ...
T Consensus 108 ~~~~~~~~~~~i~~~~dL~g~~i~v~-----~g~~~-~~~l~~~~~----------~~~~~~~-~-----~~~------- 158 (268)
T 3hv1_A 108 EQVLVTKKSSGIDSVAGMAGKTLGAQ-----AGSSG-YDAFNASPK----------ILKDVVA-N-----QKV------- 158 (268)
T ss_dssp CEEEEEEGGGCCCSSGGGTTCCEEEE-----TTCHH-HHHHHHCTT----------TTTTTSG-G-----GCE-------
T ss_pred ceEEEEECCCCCCCHHHhCCCEEEEE-----eCCch-HHHHHHhhH----------HHhhhcc-c-----ceE-------
Confidence 45677888888999999999997652 34433 223333210 0111111 0 000
Q ss_pred cccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEE
Q psy11919 293 SLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVV 371 (453)
Q Consensus 293 nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVv 371 (453)
-.|. ...+++-|..|..|++++....+......... ..+++++=. ++ ...|. .++
T Consensus 159 ---------~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~-~~~l~~~~~-----~~--------~~~~~-~~~ 214 (268)
T 3hv1_A 159 ---------VQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGV-LDQYNVMPA-----GY--------EGESF-AVG 214 (268)
T ss_dssp ---------EEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTC-GGGEEEEEC-----SS--------CCEEE-CCE
T ss_pred ---------EEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCC-CCceEECCC-----CC--------CCCcE-EEE
Confidence 0122 66789999999999999998877654443121 366777621 11 11222 234
Q ss_pred EcCCCChhHHHHHHHHHHHHH
Q psy11919 372 TSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 372 tr~~~~~~~~~~I~~lL~~l~ 392 (453)
++++. ...++.|.+.|.++.
T Consensus 215 ~~k~~-~~l~~~ln~~l~~l~ 234 (268)
T 3hv1_A 215 ARKVD-KTLIKKINQGFETLY 234 (268)
T ss_dssp ECTTC-HHHHHHHHHHHHHHH
T ss_pred EcCCC-HHHHHHHHHHHHHHH
Confidence 45543 345566777776654
No 45
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=66.71 E-value=17 Score=31.67 Aligned_cols=77 Identities=14% Similarity=0.033 Sum_probs=41.7
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHH
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~ 385 (453)
+..+++-|..|..|++++....+...+.. .....+++++=+ ++... .+... .-+++.+++ ....++.+.
T Consensus 143 ~~~~~~~l~~G~vDa~~~~~~~~~~~~~~-~~~~~~l~~~~~-----~~~~~---~~~~~-~~~~~~~k~-~~~l~~~~~ 211 (239)
T 1lst_A 143 QDLIYSDLTAGRLDAALQDEVAASEGFLK-QPAGKEYAFAGP-----SVKDK---KYFGD-GTGVGLRKD-DTELKAAFD 211 (239)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHTTT-SGGGTTEEECSS-----CBCCH---HHHCS-SBCCEECTT-CHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEeCcHHHHHHHHh-ccCCCceEEecc-----ccccc---cccCc-ceEEEEeCC-CHHHHHHHH
Confidence 56789999999999999987776532111 111245665421 11110 00001 234555665 334556777
Q ss_pred HHHHHHHH
Q psy11919 386 HAIITAAD 393 (453)
Q Consensus 386 ~lL~~l~~ 393 (453)
..|.++.+
T Consensus 212 ~~l~~l~~ 219 (239)
T 1lst_A 212 KALTELRQ 219 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766653
No 46
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=64.16 E-value=4.5 Score=40.02 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCCccccCCCCccCCC
Q psy11919 215 VAVVKKDSKVQNFEDLRGLKSCHSG 239 (453)
Q Consensus 215 VAVVkk~s~~~sl~dLkGKKsCHtG 239 (453)
..||++++++.+++||||||...+.
T Consensus 102 ~i~v~~ds~I~s~~DLkGk~Igv~~ 126 (365)
T 2de3_A 102 GFFVRDDSPITAAADLAGRRIGVSA 126 (365)
T ss_dssp EEEEETTCSCCSGGGGTTCEEEECH
T ss_pred eEEECCCCCCCCHHHhCCCeEEeec
Confidence 3567899999999999999998876
No 47
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=63.67 E-value=4.9 Score=37.72 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=76.0
Q ss_pred EEEEEEcCC--CCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCC
Q psy11919 214 AVAVVKKDS--KVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSES 291 (453)
Q Consensus 214 aVAVVkk~s--~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~ 291 (453)
.+.||++++ ++.+++||+|||...++.+++. ..+....|.+.|+-+ .+ ++- ..++ .
T Consensus 118 ~~~~v~~~~~~~i~s~~DL~Gk~i~~~~~gs~~-~~~~~~~l~~~G~~~-~~---v~~--~~~~-~-------------- 175 (346)
T 3qsl_A 118 IGVGVSKKNLPGYKGPADLKGRKIGVTAPGSST-NMVVNFFLAKHGLKA-SD---VSF--IGVG-A-------------- 175 (346)
T ss_dssp EEEEEETTTCTTCCSGGGGTTCEEEESSTTSHH-HHHHHHHHHHTTCCG-GG---SEE--EECC-S--------------
T ss_pred cEEEEecCcccCCCChHHcCCCEEEECCCCcHH-HHHHHHHHHHcCCCH-HH---eEE--EecC-C--------------
Confidence 455778877 8999999999999988776432 333333444444221 00 000 0111 0
Q ss_pred ccccccccCCccccccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcc-cccCCceE
Q psy11919 292 PSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNL-GVVPPHMV 370 (453)
Q Consensus 292 ~nLC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl-~~vP~~aV 370 (453)
...++.-|..|..|++++....+...... ...+++-..+.. .++. =.+ ...|...+
T Consensus 176 --------------~~~~~~al~~G~vDa~~~~~p~~~~~~~~-----g~~~~~~~~~~~---~~~~-~~~g~~~~~~~~ 232 (346)
T 3qsl_A 176 --------------GAGAVTALRSGQIDAISNTDPVVSMLETS-----GDIQIIVDTRTL---KDTK-EIFGGNMPAGCL 232 (346)
T ss_dssp --------------SHHHHHHHHHTSCSEEEEETTHHHHHHHT-----TCEEEEEECSSH---HHHH-HHHSSCCCCEEE
T ss_pred --------------cHHHHHHHHcCCccEEEecchhHHHHHhC-----CCeEEEEecccc---cchh-hhcCCCCceEEE
Confidence 22467889999999999987766543222 245555332210 0000 001 13567788
Q ss_pred EEcCCC---ChhHHHHHHHHHHHHHHHhc
Q psy11919 371 VTSNSK---SNMEIDIIKHAIITAADLFS 396 (453)
Q Consensus 371 vtr~~~---~~~~~~~I~~lL~~l~~lFG 396 (453)
++|++. ..+..+.+.+.+.+..++.-
T Consensus 233 ~~~~~~~~~~p~~~~~~~~a~~~a~~~~~ 261 (346)
T 3qsl_A 233 YAPQAFVDANPNTAQALTNAIVRADKWIQ 261 (346)
T ss_dssp EEEHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 888763 33334556666666666554
No 48
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=56.19 E-value=3.9 Score=39.47 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=34.2
Q ss_pred hceeccCCCcccccccccccccccccccccCCCCcEEEEEEEEcCCCCCCccccCCCCccCCC
Q psy11919 177 QDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSG 239 (453)
Q Consensus 177 AD~~v~daed~~~A~k~~l~~~~pi~~E~y~~~~~~~aVAVVkk~s~~~sl~dLkGKKsCHtG 239 (453)
+|+++.....+..+...+. |++.+.. .+.... ..+.+++.++.+.+++|||||+.-.++
T Consensus 60 ~D~g~~~~~~~~~a~~~G~-~v~~v~~-~~~~~~--~~~~~~~~~~~~~~~~dLkGK~ig~~~ 118 (342)
T 4esw_A 60 VDMGLKAMVGTLAAKARGF-PVTSIGS-LLDEPF--TGICYLEGSGITSDFQSLKGKRIGYVG 118 (342)
T ss_dssp SSEEEEEHHHHHHHHHTTC-CEEEEEE-EECSCC--EEEEEETTSSCCSSGGGGTTCEEEESS
T ss_pred cCEEEecHHHHHHHHHCCC-CeEEEEE-eccCCc--ccccccccccccCCHHHhCCCEEEecC
Confidence 8988877666655554433 3333322 221111 455455544555679999999987653
No 49
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=54.85 E-value=95 Score=27.08 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=41.6
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHH
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~ 385 (453)
...+++-|..|..|++++....+...... ....++..+=. ++ ...|. .++++++. ...++.|.
T Consensus 145 ~~~~~~~L~~GrvDa~i~~~~~~~~~~~~--~~~~~~~~~~~-----~~--------~~~~~-~~~~~k~~-~~l~~~ln 207 (245)
T 3k4u_A 145 EAEAVQEVLNGKADMFIFDLPFNVAFMAQ--KGQGYLVHLDT-----SL--------TYEPL-GWAIKKGD-PDFLNWLN 207 (245)
T ss_dssp HHHHHHHHHSSSSEEEEEEHHHHHHHHHH--TTTTTEEEECC-----CC--------SCEEE-CCEECTTC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEcHHHHHHHHhc--CCccceeecCC-----Cc--------ccccE-EEEEcCCC-HHHHHHHH
Confidence 56789999999999999988777664443 22345554411 11 11222 34455553 34556677
Q ss_pred HHHHHHH
Q psy11919 386 HAIITAA 392 (453)
Q Consensus 386 ~lL~~l~ 392 (453)
..|.++.
T Consensus 208 ~~l~~l~ 214 (245)
T 3k4u_A 208 HFLAQIK 214 (245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 50
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=53.63 E-value=17 Score=32.00 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=47.4
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHH-HcCccCCCCCCccccccccCCCCCccCCCCcccCCCC
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLL-EKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSES 291 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~-~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~ 291 (453)
..+.||++++++.+++||+|++.+.. .+ ..+..-+..+. +.|+ +. .+. .+. .
T Consensus 129 ~~~~~~~~~~~i~~~~dL~g~~i~~~-~g--~~~~~~~~~~~~~~g~-~~-------~~~-~~~-~-------------- 181 (259)
T 2v25_A 129 AIGLLVLKEKKYKSLADMKGANIGVA-QA--ATTKKAIGEAAKKIGI-DV-------KFS-EFP-D-------------- 181 (259)
T ss_dssp EEEEEEEGGGCCCSGGGCTTCEEEEE-TT--CSHHHHHHHHHHHTTC-CC-------EEE-EES-S--------------
T ss_pred ceEEEEeCCCCCCCHHHhCCCEEEEe-cC--CchHHHHHHHHHhcCC-ce-------eEE-EeC-C--------------
Confidence 55778899988999999999997653 22 22222222222 2221 00 000 111 0
Q ss_pred ccccccccCCccccccchhhhhhcCCCcEEEEechhhHH
Q psy11919 292 PSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNE 330 (453)
Q Consensus 292 ~nLC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~ 330 (453)
...+++-|..|..|++++....+..
T Consensus 182 --------------~~~~~~~l~~g~vDa~~~~~~~~~~ 206 (259)
T 2v25_A 182 --------------YPSIKAALDAKRVDAFSVDKSILLG 206 (259)
T ss_dssp --------------HHHHHHHHHTTSSSEEEEEHHHHTT
T ss_pred --------------HHHHHHHHHcCCCcEEEecHHHHHH
Confidence 4568899999999999998776654
No 51
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=49.36 E-value=12 Score=34.86 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=48.0
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCcccccc-ccCCCCCccCCCCcccCCCC
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVE-QFFSGGSCVPGLEEKEKSES 291 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs-~FFs~~SC~PG~~~~~~n~~ 291 (453)
..+.||++++++.+++||+|||...+ .+ +.....-...|.+.|+-+ . .+. .+.+
T Consensus 86 ~~~lv~~~~~~i~s~~dL~Gk~i~~~-~g-s~~~~~l~~~l~~~Gl~~-~------~v~~~~~~---------------- 140 (308)
T 2x26_A 86 AEVILVAENSPIKTVADLKGHKVAFQ-KG-SSSHNLLLRALRQAGLKF-T------DIQPTYLT---------------- 140 (308)
T ss_dssp GEEEEEETTCSCCSGGGGTTSEEEEC-TT-SHHHHHHHHHHHHTTCCG-G------GSEEEECC----------------
T ss_pred ceEEEEeCCCCCCCHHHcCCCEEeee-CC-CcHHHHHHHHHHHcCCCH-H------HeEEEecC----------------
Confidence 34667888889999999999998874 23 222333233444444321 0 010 0000
Q ss_pred ccccccccCCccccccchhhhhhcCCCcEEEEechhhHH
Q psy11919 292 PSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNE 330 (453)
Q Consensus 292 ~nLC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~ 330 (453)
...++.-|..|..|++++....+..
T Consensus 141 --------------~~~~~~al~~G~vDa~~~~~~~~~~ 165 (308)
T 2x26_A 141 --------------PADARAAFQQGNVDAWAIWDPYYSA 165 (308)
T ss_dssp --------------HHHHHHHHHTTSSSEEEEETTHHHH
T ss_pred --------------hHHHHHHHHcCCCCEEEecchhHHH
Confidence 3346788999999999987665544
No 52
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=47.96 E-value=80 Score=27.74 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=41.4
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHH
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~ 385 (453)
+..+++-|..|..|++++....+......... +.++.+= |+... ...+. .++++++ ....++.|.
T Consensus 155 ~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~--~~~~~~~------~~~~~-----~~~~~-~~~~~k~-~~~l~~~l~ 219 (257)
T 2q88_A 155 GQSGLKMLQDGRIDVYSLPVLSINDLVSKAND--PNVEVLA------PVEGA-----PVYCD-GAAFRKG-DEALRDAFD 219 (257)
T ss_dssp HHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCC--TTEEEEC------SCBTC-----CCEEB-CCEECGG-GHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCC--cceeeec------ccCCc-----cccce-EEEEcCC-CHHHHHHHH
Confidence 56789999999999999988777654433111 3454431 22211 01122 2345554 344556777
Q ss_pred HHHHHHHH
Q psy11919 386 HAIITAAD 393 (453)
Q Consensus 386 ~lL~~l~~ 393 (453)
..|.++.+
T Consensus 220 ~~l~~~~~ 227 (257)
T 2q88_A 220 VELAKLKE 227 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766543
No 53
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=36.29 E-value=2e+02 Score=24.61 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=40.5
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHH
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~ 385 (453)
...+++-|..|..|++++....+...... ..+..++-+.. |+ ...|. +++.++ ....++.|.
T Consensus 155 ~~~~~~~l~~grvDa~~~~~~~~~~~~~~----~~~~~~~~~~~---~~--------~~~~~-~~~~~k--~~~l~~~ln 216 (239)
T 3kbr_A 155 NVTIFQQIVDGKADLMMTDAIEARLQSRL----HPELCAVHPQQ---PF--------DFAEK-AYLLPR--DEAFKRYVD 216 (239)
T ss_dssp TTTHHHHHHTTSCSEEEEEHHHHHHHHHH----CTTEEECCCC----CC--------CCEEE-CCEECS--CHHHHHHHH
T ss_pred HHHHHHHHHcCCcCEEEEchHHHHHHHHh----CCCcEEecCCC---Cc--------cccce-EEEEcC--CHHHHHHHH
Confidence 56688999999999999988777654332 12455542211 11 11222 244555 445566777
Q ss_pred HHHHHHH
Q psy11919 386 HAIITAA 392 (453)
Q Consensus 386 ~lL~~l~ 392 (453)
..|.++.
T Consensus 217 ~~l~~l~ 223 (239)
T 3kbr_A 217 QWLHIAE 223 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 54
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=26.96 E-value=33 Score=31.37 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=66.9
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCCCc
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESP 292 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~~~ 292 (453)
..+.|+++++++.+++||+|||.+-. .|+.. ...+.+.. + + . .+.
T Consensus 134 ~~~~~~~~~~~i~~~~dL~g~~i~~~-----~g~~~-~~~l~~~~--~--~---~-~~~--------------------- 178 (292)
T 1xt8_A 134 ALGVAVPKDSNITSVEDLKDKTLLLN-----KGTTA-DAYFTQNY--P--N---I-KTL--------------------- 178 (292)
T ss_dssp EEEEEEETTCCCCSSGGGTTSEEEEE-----TTSHH-HHHHHHHC--T--T---S-EEE---------------------
T ss_pred ceEEEEECCCCCCCHHHhCCCEEEEe-----CCCcH-HHHHHHhC--C--C---c-eEE---------------------
Confidence 55678888888999999999997642 23332 22232211 0 0 0 000
Q ss_pred cccccccCCcccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEE
Q psy11919 293 SLEKICHNITTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVV 371 (453)
Q Consensus 293 nLC~lC~g~d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVv 371 (453)
.|. +..+++-|..|..|++++....+...... . .+++++=+ + +...+.-.++
T Consensus 179 ----------~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~--~--~~l~~~~~-----~--------~~~~~~~~~~ 231 (292)
T 1xt8_A 179 ----------KYDQNTETFAALMDKRGDALSHDNTLLFAWVKD--H--PDFKMGIK-----E--------LGNKDVIAPA 231 (292)
T ss_dssp ----------EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHH--C--TTEEEEEE-----E--------EEEEEEECCE
T ss_pred ----------EcCCHHHHHHHHHcCCccEEEecHHHHHHHHHh--C--CCeEEccc-----c--------cccCceeEEE
Confidence 011 56688999999999999988777664433 1 23666511 1 1112221455
Q ss_pred EcCCCChhHHHHHHHHHHHHH
Q psy11919 372 TSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 372 tr~~~~~~~~~~I~~lL~~l~ 392 (453)
++++ ....++.+...|.++.
T Consensus 232 ~~k~-~~~l~~~l~~~l~~l~ 251 (292)
T 1xt8_A 232 VKKG-DKELKEFIDNLIIKLG 251 (292)
T ss_dssp EETT-CHHHHHHHHHHHHHHH
T ss_pred EeCC-CHHHHHHHHHHHHHHH
Confidence 5665 3344566777666554
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=26.90 E-value=27 Score=30.06 Aligned_cols=116 Identities=9% Similarity=-0.010 Sum_probs=66.5
Q ss_pred EEEEEEEcCC--CCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccccCCCCCccCCCCcccCCC
Q psy11919 213 LAVAVVKKDS--KVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSE 290 (453)
Q Consensus 213 ~aVAVVkk~s--~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~FFs~~SC~PG~~~~~~n~ 290 (453)
..+.|+++++ ++.+++||+|||.+-. .|+.. ...+.+.+ + .+. .+. .
T Consensus 95 ~~~~~~~~~~~~~i~~~~dL~g~~v~~~-----~g~~~-~~~l~~~~-~---------~~~-~~~-~------------- 143 (233)
T 1ii5_A 95 GIGLLIPGTATPLFRSVGDLKNKEVAVV-----RDTTA-VDWANFYQ-A---------DVR-ETN-N------------- 143 (233)
T ss_dssp EEEEEEEGGGTTTCSSGGGGTTCEEEEE-----TTSHH-HHHHHHTT-C---------EEE-EES-S-------------
T ss_pred CeEEEEECCCCCCCCCHHHhCCCeEEEE-----CCccH-HHHHHHcC-C---------CeE-EcC-C-------------
Confidence 4567778876 7899999999987653 23332 22333221 0 000 111 0
Q ss_pred CccccccccCCccccccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceE
Q psy11919 291 SPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMV 370 (453)
Q Consensus 291 ~~nLC~lC~g~d~Y~~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aV 370 (453)
...+++-|..|..|++++....+...... ....+++++=. + +. .....+
T Consensus 144 ---------------~~~~~~~l~~g~vDa~~~~~~~~~~~~~~--~~~~~~~~~~~-----~--------~~-~~~~~~ 192 (233)
T 1ii5_A 144 ---------------LTAAITLLQKKQVEAVMFDRPALIYYTRQ--NPNLNLEVTEI-----R--------VS-LEPYGF 192 (233)
T ss_dssp ---------------HHHHHHHHHTTSCSEEEEEHHHHHHHHHH--CGGGCEEECSC-----C--------SE-EEEEEE
T ss_pred ---------------HHHHHHHHHcCCccEEEeCHHHHHHHHHh--CCCCcEEEeCc-----c--------cc-ccceEE
Confidence 56688999999999999988777654333 11235655411 0 01 123345
Q ss_pred EEcCCCChhHHHHHHHHHHHHH
Q psy11919 371 VTSNSKSNMEIDIIKHAIITAA 392 (453)
Q Consensus 371 vtr~~~~~~~~~~I~~lL~~l~ 392 (453)
+++++.. .++.+..+|.++.
T Consensus 193 ~~~k~~~--l~~~~~~~l~~l~ 212 (233)
T 1ii5_A 193 VLKENSP--LQKTINVEMLNLL 212 (233)
T ss_dssp EEETTCT--THHHHHHHHHHHH
T ss_pred EEcCCch--HHHHHHHHHHHHH
Confidence 5666532 4567777776664
No 56
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=26.14 E-value=29 Score=31.03 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=21.5
Q ss_pred EEEEEEEcCCCCCCccccCCCCccCCC
Q psy11919 213 LAVAVVKKDSKVQNFEDLRGLKSCHSG 239 (453)
Q Consensus 213 ~aVAVVkk~s~~~sl~dLkGKKsCHtG 239 (453)
..+.||++++++.+++||+||+.|.-|
T Consensus 110 ~~~~~~~~~~~i~~~~dL~g~~~~~ig 136 (263)
T 1mqi_A 110 GISIMIKKGTPIESAEDLSKQTEIAYG 136 (263)
T ss_dssp CEEEEEETTCSCCSHHHHHTCSSSEEE
T ss_pred cEEEEEcCccccCCHHHHhcccCeeEE
Confidence 446688888889999999999966433
No 57
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=20.79 E-value=47 Score=28.28 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=26.4
Q ss_pred ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCceEEe
Q psy11919 306 ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFL 345 (453)
Q Consensus 306 ~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy~LL 345 (453)
...+++-|..|..|++++....+...... ....+++++
T Consensus 140 ~~~~~~~l~~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~ 177 (228)
T 2pyy_A 140 IEEAYKALQTKKADAVVFDAPVLLFYAAN--EGKGKVEIV 177 (228)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHT--TTTTTEEEE
T ss_pred HHHHHHHHHcCCCCEEEecHHHHHHHHHh--CCCCcEEEe
Confidence 56788999999999999988777654333 112456654
Done!