RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11919
(453 letters)
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A
{Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A
1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C*
1z6v_A 1z6w_A
Length = 334
Score = 144 bits (363), Expect = 2e-39
Identities = 81/244 (33%), Positives = 113/244 (46%), Gaps = 24/244 (9%)
Query: 204 EKYGNEKDLL----AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E YG E+ AVAVVKK +L+GLKSCH+G ++GW P+ L
Sbjct: 81 EVYGTERQPRTHYYAVAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLDW 139
Query: 260 KNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFA-----------TN 308
P V +FFS SCVPG ++ + P+L ++C +
Sbjct: 140 TGPPEPIEAAVARFFS-ASCVPGADKGQF---PNLCRLCAGTGENKCAFSSQEPYFSYSG 195
Query: 309 TLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPH 368
+CL+ G DVAF + V E + + + DE E LC R PV K DC+L VP H
Sbjct: 196 AFKCLRDGAGDVAFIGESTVFEDLSDEAER-DEYELLCPDNTRKPVDKFKDCHLARVPSH 254
Query: 369 MVVTSNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVESLP 427
VV N + D I + + A + F K K F+LFGS G+ D+LF + A G +P
Sbjct: 255 AVVA--RSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 312
Query: 428 DQAT 431
+
Sbjct: 313 PRID 316
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus}
SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A
1gvc_A*
Length = 332
Score = 137 bits (346), Expect = 4e-37
Identities = 74/244 (30%), Positives = 103/244 (42%), Gaps = 24/244 (9%)
Query: 204 EKYGNEKDL----LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E Y + + AVAVVKK ++ DL+G SCH+G S+GW P+ LL +G I
Sbjct: 80 EVYEHTEGSTTSYYAVAVVKKGTEFT-VNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAI 138
Query: 260 K---NDVCPYYKGVEQFFSGGSCVPGLEEKEKSES---PSLEKICHNITTIFA-TNTLQC 312
+ + + V +FFS SCVPG ++K + C + C
Sbjct: 139 EWEGIESGSVEQAVAKFFS-ASCVPGATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHC 197
Query: 313 LKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVT 372
LK G DVAF VNE + + DE E LC G R PV CN V H VV
Sbjct: 198 LKDGKGDVAFVKHTTVNENAPD---QKDEYELLCLDGSRQPVDNYKTCNWARVAAHAVVA 254
Query: 373 SNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKP----DVLFLNPATGVESLP 427
+ +++ I + A F F LFG K D+LF + A ++ +P
Sbjct: 255 R---DDNKVEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVP 311
Query: 428 DQAT 431
Sbjct: 312 SLMD 315
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo
sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A
2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A
1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A
...
Length = 327
Score = 132 bits (333), Expect = 3e-35
Identities = 81/239 (33%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
Query: 204 EKYGNEKD----LLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E YG+++D AVAVVKKDS LRG KSCH+G S+GW P+ L
Sbjct: 83 EFYGSKEDPQTFYYAVAVVKKDSGF-QMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPE 141
Query: 260 KNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICH----NITTIFA--TNTLQCL 313
P K V FFS GSC P + + P L ++C + + + +CL
Sbjct: 142 --PRKPLEKAVANFFS-GSCAPCADGT---DFPQLCQLCPGCGCSTLNQYFGYSGAFKCL 195
Query: 314 KMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTS 373
K G DVAF + E + + D+ E LC R PV + DC+L VP H VV
Sbjct: 196 KDGAGDVAFVKHSTIFENLANKADR-DQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVA- 253
Query: 374 NSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
+ D+I + A + F K K + F+LF S GK D+LF + A G +P +
Sbjct: 254 -RSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVPPRMD 310
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin,
conformational change; 2.00A {Homo sapiens} SCOP:
c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A
1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A
1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A
1i6q_A 1jw1_A ...
Length = 691
Score = 129 bits (325), Expect = 2e-32
Identities = 83/244 (34%), Positives = 115/244 (47%), Gaps = 24/244 (9%)
Query: 204 EKYGNEKDLL----AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E YG E+ AVAVVKK Q +L+GLKSCH+G ++GW P+ L
Sbjct: 80 EVYGTERQPRTHYYAVAVVKKGGSFQ-LNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNW 138
Query: 260 KNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNT---------- 309
P V +FFS SCVPG +K + P+L ++C +
Sbjct: 139 TGPPEPIEAAVARFFS-ASCVPG---ADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSG 194
Query: 310 -LQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPH 368
+CL+ G DVAF + V E + + + DE E LC R PV K DC+L VP H
Sbjct: 195 AFKCLRDGAGDVAFIRESTVFEDLSDEAER-DEYELLCPDNTRKPVDKFKDCHLARVPSH 253
Query: 369 MVVTSNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVESLP 427
VV + N + D I + + A + F K K F+LFGS G+ D+LF + A G +P
Sbjct: 254 AVVARS--VNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
Query: 428 DQAT 431
+
Sbjct: 312 PRID 315
Score = 125 bits (315), Expect = 4e-31
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 26/234 (11%)
Query: 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQ 272
LAVAVV++ + ++G KSCH+ ++GW P+ L + C + +
Sbjct: 436 LAVAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFNQ----TGSCKFDE---- 487
Query: 273 FFSGGSCVPGLEEKEKS------ESPSLEKICHNITTIFA--TNTLQCLKMGDADVAFTN 324
+ SC PG + + + K N + T +CL DVAF
Sbjct: 488 -YFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVK 546
Query: 325 QVKVNEAIEEGI-------FKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKS 377
V V + + K+ + LC G R PV++A C+L + P H VV+ K
Sbjct: 547 DVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRMDKV 606
Query: 378 NMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
++ H S P+ F LF S ++LF + + L + T
Sbjct: 607 ERLKQVLLHQQAKFGRNGSDCPDKFCLFQS--ETKNLLFNDNTECLARLHGKTT 658
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate
structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP:
c.94.1.2 c.94.1.2 PDB: 1lfc_A
Length = 689
Score = 126 bits (317), Expect = 2e-31
Identities = 76/243 (31%), Positives = 109/243 (44%), Gaps = 22/243 (9%)
Query: 204 EKYGNEKD----LLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E YG ++ AVAVVKK S Q + L+G KSCH+G S+GW+ P+ L
Sbjct: 80 EIYGTKESPQTHYYAVAVVKKGSNFQ-LDQLQGRKSCHTGLGRSAGWIIPMGILRPYLSW 138
Query: 260 KNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNT---------- 309
+ P V +FFS SCVP ++ + P+L ++C +
Sbjct: 139 TESLEPLQGAVAKFFS-ASCVPCIDRQAY---PNLCQLCKGEGENQCACSSREPYFGYSG 194
Query: 310 -LQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPH 368
+CL+ G DVAF + V E + E + D+ E LC RAPV +C+L VP H
Sbjct: 195 AFKCLQDGAGDVAFVKETTVFENLPEKADR-DQYELLCLNNSRAPVDAFKECHLAQVPSH 253
Query: 369 MVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPD 428
VV + + I K K F+LFGS G+ D+LF + A G +P
Sbjct: 254 AVVARSVDGKED-LIWKLLSKAQEKFGKNKSRSFQLFGSPPGQRDLLFKDSALGFLRIPS 312
Query: 429 QAT 431
+
Sbjct: 313 KVD 315
Score = 121 bits (303), Expect = 1e-29
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 26/234 (11%)
Query: 213 LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQ 272
LAVAVVKK ++ + L+ KSCH+ ++GW P+ ++ + ++
Sbjct: 434 LAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQ--------TGSCAFDE 485
Query: 273 FFSGGSCVPGLEEKEKS------ESPSLEKICHNITTIFA--TNTLQCLKMGDADVAFTN 324
FFS SC PG + K + + L+K N + T +CL DVAF
Sbjct: 486 FFSQ-SCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVK 544
Query: 325 QVKVNEAIEEGI-------FKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKS 377
V E ++ LC G R PV++A C+L V P H VV+ + ++
Sbjct: 545 NDTVWENTNGESTADWAKNLNREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRA 604
Query: 378 NMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
++ H P+ F LF S ++LF + + L + T
Sbjct: 605 AHVKQVLLHQQALFGKNGKNCPDKFCLFKS--ETKNLLFNDNTECLAKLGGRPT 656
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1-
butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB;
1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A*
3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 2b6d_A*
2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A*
2dwa_A* 2dwh_A* ...
Length = 335
Score = 120 bits (302), Expect = 7e-31
Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 26/233 (11%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
AVAVVKK ++ + L+ KSCH+ ++GW P+ ++ + ++F
Sbjct: 94 AVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQ--------TGSCAFDEF 145
Query: 274 FSGGSCVPGLEEKEK------SESPSLEKICHNITTIFATNT--LQCLKMGDADVAFTNQ 325
FS SC PG + K + + L+K N + T +CL DVAF
Sbjct: 146 FSQ-SCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKN 204
Query: 326 VKVNEAIEEGI-------FKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSN 378
V E K ++ LC G R PV++A C+L V P H VV+ + ++
Sbjct: 205 DTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAA 264
Query: 379 MEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
++ H P+ F LF S ++LF + + L + T
Sbjct: 265 HVEQVLLHQQALFGKNGKNCPDKFCLFKS--ETKNLLFNDNTECLAKLGGRPT 315
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily,
lyase inhibitor; 2.40A {Mus musculus}
Length = 687
Score = 118 bits (297), Expect = 7e-29
Identities = 60/234 (25%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
VAVVKK ++ L+G KSCH+ S GW P+ + + + C + F
Sbjct: 435 VVAVVKKSDVGITWKSLQGKKSCHTAVGTSEGWNVPMGLIYD----QTGSCKFDA----F 486
Query: 274 FSGGSCVPGLEEKEKSESP-----SLEKIC-HNITTIFA--TNTLQCLKMGDADVAFTNQ 325
FS SC PG + + + +C N + + L+CL DVAF
Sbjct: 487 FS-RSCAPGSDPDSPLCALCVGGNNPAHMCAANNAEGYHGSSGALRCLVEKG-DVAFMKH 544
Query: 326 VKVNEAIEEGI-------FKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSN 378
V + + K ++ E LC G R PV++A C+L VP V + K+
Sbjct: 545 PTVLQNTDGKNPEPWAKGLKHEDFELLCLDGTRKPVTEAQSCHLARVPNRAVFSRKDKA- 603
Query: 379 MEIDIIKHAIITAADLFSKKPEIFKLFGSFM-GKPDVLFLNPATGVESLPDQAT 431
D ++ + +LF + + +F F D+LF + + +L D+ T
Sbjct: 604 ---DFVRRILFNQQELFGRNGFEYMMFQMFESSAKDLLFSDDTECLSNLQDKTT 654
Score = 110 bits (274), Expect = 7e-26
Identities = 78/245 (31%), Positives = 109/245 (44%), Gaps = 32/245 (13%)
Query: 204 EKYGNEKDLL----AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E YG++ D VA+ KK + LRG KSCH+G S+GW P+ LL G
Sbjct: 89 EYYGSKDDPKTHYYVVAMAKKGTGF-QLNQLRGKKSCHTGLGWSAGWYVPLSTLLPSGSR 147
Query: 260 KNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNT---------- 309
+ FFS SCVP + PSL ++C T +
Sbjct: 148 E-------TAAATFFS-SSCVPC---ADGKMFPSLCQLCAGKGTDKCACSSREPYFGSWG 196
Query: 310 -LQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPH 368
L+CL+ G ADV+F + V EA+ D+ E LC R PV + C L VP H
Sbjct: 197 ALKCLQDGTADVSFVKHLTVFEAMPTK-ADRDQYELLCMDNTRRPVEEYEQCYLARVPSH 255
Query: 369 MVVTSNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVESLP 427
+VV + D I+ + A + F K K F+LFGS G+ D+LF + A G+ +P
Sbjct: 256 VVVARSVDGK--EDSIQELLRVAQEHFGKDKSSPFQLFGSPHGE-DLLFTDAAHGLLRVP 312
Query: 428 DQATD 432
+
Sbjct: 313 RKIDI 317
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter,
transferrin R serum, metal transport; HET: P6G; 2.10A
{Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A*
3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Length = 698
Score = 117 bits (293), Expect = 3e-28
Identities = 80/236 (33%), Positives = 109/236 (46%), Gaps = 16/236 (6%)
Query: 204 EKYGNEKDL----LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E YG+++D AVAVVKKDS LRG KSCH+G S+GW P+ L
Sbjct: 102 EFYGSKEDPQTFYYAVAVVKKDS-GFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLP- 159
Query: 260 KNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICH-NITTIFATNT--LQCLKMG 316
P K V FFS GSC P + + + L C + + + +CLK G
Sbjct: 160 -EPRKPLEKAVANFFS-GSCAPCADGTDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDG 217
Query: 317 DADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSK 376
DVAF + E + + D+ E LC R PV + DC+L VP H VV +
Sbjct: 218 AGDVAFVKHSTIFENLANKADR-DQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMG 276
Query: 377 SNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
D+I + A + F K K + F+LF S GK D+LF + A G +P +
Sbjct: 277 GKE--DLIWELLNQAQEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVPPRMD 329
Score = 114 bits (286), Expect = 2e-27
Identities = 62/240 (25%), Positives = 93/240 (38%), Gaps = 25/240 (10%)
Query: 205 KYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVC 264
+ E AVAVVKK + +++L+G KSCH+ ++GW P+ L K + C
Sbjct: 438 EDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKI----NHC 493
Query: 265 PYYKGVEQFFSGGSCVPGLEEKEK----SESPSLEKICHNITTIFA--TNTLQCLKMGDA 318
+ ++FF C PG ++ L N + T +CL +
Sbjct: 494 RF----DEFF-SEGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCL-VEKG 547
Query: 319 DVAFTNQVKVNEAIEEGI-------FKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVV 371
DVAF V + + E LC G R PV + A+C+L P H VV
Sbjct: 548 DVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVV 607
Query: 372 TSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
T K I++ + F LF S D+LF + + L D+ T
Sbjct: 608 TRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 665
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP
metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B
1suv_E
Length = 342
Score = 113 bits (282), Expect = 4e-28
Identities = 60/231 (25%), Positives = 89/231 (38%), Gaps = 25/231 (10%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
AVAVVKK + +++L+G KSCH+ ++GW P+ L K + C + +
Sbjct: 91 AVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKI----NHCRFDE----- 141
Query: 274 FSGGSCVPGLEEKEK----SESPSLEKICHNITTIFA--TNTLQCLKMGDADVAFTNQVK 327
F C PG ++ L N + T +CL + DVAF
Sbjct: 142 FFSEGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCL-VEKGDVAFVKHQT 200
Query: 328 VNEAIEEGI-------FKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNME 380
V + + E LC G R PV + A+C+L P H VVT K
Sbjct: 201 VPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 260
Query: 381 IDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
I++ + F LF S D+LF + + L D+ T
Sbjct: 261 HKILRQQQHLFGSNVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 309
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal
transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2
PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A*
1iq7_A*
Length = 686
Score = 114 bits (285), Expect = 2e-27
Identities = 72/245 (29%), Positives = 98/245 (40%), Gaps = 30/245 (12%)
Query: 204 EKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIK--- 260
G+ AVAVVKK ++ DL+G SCH+G S+GW P+ L+ +G I+
Sbjct: 84 HTEGSTTSYYAVAVVKKGTEFT-VNDLQGKTSCHTGLGRSAGWNIPIGTLIHRGAIEWEG 142
Query: 261 NDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNT---------LQ 311
+ + V +FFS SCVPG + L + C
Sbjct: 143 IESGSVEQAVAKFFS-ASCVPG-----ATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFH 196
Query: 312 CLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVV 371
CLK G DVAF VNE + + DE E LC G R PV CN V H VV
Sbjct: 197 CLKDGKGDVAFVKHTTVNENAPD---QKDEYELLCLDGSRQPVDNYKTCNWARVAAHAVV 253
Query: 372 TSNSKSNMEIDIIKHAIITAADLFSKKP-EIFKLFGSFMGKP----DVLFLNPATGVESL 426
+ ++ I + A F F LFG K D+LF + A ++ +
Sbjct: 254 ARDDNK---VEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRV 310
Query: 427 PDQAT 431
P
Sbjct: 311 PSLMD 315
Score = 106 bits (264), Expect = 1e-24
Identities = 61/234 (26%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
AVAV +KDS V + +L+G KSCH+ ++GWV P+ + + +++
Sbjct: 433 AVAVARKDSNVN-WNNLKGKKSCHTAVGRTAGWVIPMGLIHNR--------TGTCNFDEY 483
Query: 274 FSGGSCVPGLEEKEK-------SESPSLEKICHNITTIFATNT--LQCLKMGDADVAFTN 324
F C PG + S EK + + T L+CL DVAF
Sbjct: 484 F-SEGCAPGSPPNSRLCQLCQGSGGIPPEKCVASSHEKYFGYTGALRCLVEKG-DVAFIQ 541
Query: 325 QVKVNEAIEEGI-------FKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKS 377
V E ++D+ E LC+ G RA V +CNL VP H VV K+
Sbjct: 542 HSTVEENTGGKNKADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVRPEKA 601
Query: 378 NMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
N D+++ + F +F S D+LF + + + + T
Sbjct: 602 NKIRDLLERQEKRFGV-NGSEKSKFMMFES--QNKDLLFKDLTKCLFKVREGTT 652
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 3e-11
Identities = 76/447 (17%), Positives = 132/447 (29%), Gaps = 126/447 (28%)
Query: 1 MLG---TNLRASILFINMGFPLSPILSSTCEESPSFEVFW-SVR--------LRIL---- 44
+LG T + + LS + F++FW +++ L +L
Sbjct: 158 VLGSGKTWVALDVC-----------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 45 ------HITRSSKTLNYKAKGSIKSFKLGLVAGFSSEVSSKSSKTL----NYKAGGCIKS 94
+RS + N K + I S + L S+ L N + +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNA 261
Query: 95 FKLG---LVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLASCK---LR 148
F L L+ +V+ + T + LT D + + C+ L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLP 319
Query: 149 S-------------ATHYQVDLTDISHWRRSSRN-------SSVKCLYQDYLVNRFGSLG 188
A + L +W+ + + SS+ L F L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 189 GAAKSVWLPFQ--CR---NLEKYGNE---KDLLAVAVVKKDSKVQNFEDLRGLKSCHSGY 240
S +P ++ K L ++V+K K S S Y
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-------ESTISIPSIY 432
Query: 241 MDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPG------------LEEKEK 288
++ + Y L + ++ +Y + F S P L+ E
Sbjct: 433 LELKVKLENEYA-LHRSIVD-----HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 289 SESPSL------------EKICHNITTIFAT----NTLQCLKMGDADVAFTNQVKVNEAI 332
E +L +KI H+ T A+ NTLQ LK + + N+
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF------YKPYICDNDPK 540
Query: 333 EEGIFKVDEIEFLCSKGGRAPVSKAAD 359
E + ++FL SK D
Sbjct: 541 YERLVN-AILDFLPKIEENLICSKYTD 566
Score = 32.5 bits (73), Expect = 0.32
Identities = 43/438 (9%), Positives = 105/438 (23%), Gaps = 192/438 (43%)
Query: 22 ILSSTCEESPSFEVFWSVRLRILHITR----SSKTLNYKAKGSIKSFKLGLVAGFSSEVS 77
I+ S S + +FW++ + + + +NYK F L++ +E
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-------F---LMSPIKTEQR 103
Query: 78 SKSSKTLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLP 137
S T Y E ++Y + K
Sbjct: 104 QPSMMTRMY------------------IEQRDRLYNDNQ-----VFAK------------ 128
Query: 138 VYSNLASCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQ----DYLVNRFGSLGGAAKS 193
Y V R + L + ++ G + G+ K+
Sbjct: 129 ---------------YNV-------SRLQPYLKLRQALLELRPAKNVL-IDG-VLGSGKT 164
Query: 194 VWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHL 253
+A+ V + + W+
Sbjct: 165 W------------------VALDVCLSYKVQCKMDF--------KIF-----WL------ 187
Query: 254 LEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTLQCL 313
+ +C ++ L+K+ + I + +
Sbjct: 188 ---------------------NLKNC-----NSPETVLEMLQKLLYQIDPNWTSR----- 216
Query: 314 KMGDADVAFTNQVKVNEAIEE--GIFK----------VDEIEFLCSKGGRAPVSKAAD-- 359
+D + +++++ E + K + + + A +
Sbjct: 217 ----SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAK----AWNAFNLS 265
Query: 360 CNLGVVPPHMVVTSNSKSNMEI---DIIKH-AIITAADLFSKKPEIFKLFGSFMGKPDVL 415
C +++T+ K + H ++ + + E+ L ++
Sbjct: 266 CK-------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCR--- 314
Query: 416 FLNPATGVESLPDQATDV 433
+ LP +
Sbjct: 315 -------PQDLPREVLTT 325
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 4e-06
Identities = 70/337 (20%), Positives = 112/337 (33%), Gaps = 98/337 (29%)
Query: 41 LRILH----------ITRSSKTLNYKAKGSIKS---FKLGL-VAGFSSEVSSKSSKTLNY 86
LR L+ I S++TL+ + ++ + F GL + + S+ K +Y
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK--DY 230
Query: 87 KAGGCIKSFKL-GLVAGFSSEVSSKVYGLRPTIYRSILP------KVVLTA-------DW 132
I S L G++ V++K+ G P RS L + ++TA W
Sbjct: 231 LLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 133 RQYLP----VYSNLASCKLRSATHYQVDLTDISHWRRSSRNS--------SVKCLYQDYL 180
+ + L +R Y S S N+ S+ L Q+ +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 181 ---VNRFGSLGGAAKSVWL-----PFQCRNLEKYGNEKDLLAVAV----VKKDSKV-QN- 226
VN+ S A K V + +NL G + L + + K S + Q+
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGA---KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 227 --FEDLRGLK--------SC--HSGYMDSSGWVAPVYHLLEKGLIKNDV--------CPY 266
F + R LK + HS + P L+ K L+KN+V P
Sbjct: 407 IPFSE-RKLKFSNRFLPVASPFHSHLL------VPASDLINKDLVKNNVSFNAKDIQIP- 458
Query: 267 YKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITT 303
V F G L S S + I
Sbjct: 459 ---VYDTFDGSD----LRVLSGSISERI---VDCIIR 485
Score = 48.1 bits (114), Expect = 6e-06
Identities = 74/466 (15%), Positives = 119/466 (25%), Gaps = 178/466 (38%)
Query: 37 WSVRLRILHITRSSKTLNYKAKGSIK-SF----KLGLVA-----GFSSEVSSKSSKTLNY 86
+S R TL++ GS++ +A F+ T +
Sbjct: 4 YSTR---------PLTLSH---GSLEHVLLVPTASFFIASQLQEQFNK---ILPEPTEGF 48
Query: 87 KAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLP---VYSNLA 143
A + LV F VSS V + + +L + LT YL +++ A
Sbjct: 49 AADDEPTT-PAELVGKFLGYVSSLVEPSKVGQFDQVL-NLCLTEFENCYLEGNDIHALAA 106
Query: 144 SCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQ-DYLVNRFGSLGGAAKSVWLPFQCRN 202
L + +K + R + S
Sbjct: 107 K------------LLQENDTTLVKTKELIKNYITARIMAKR--PFDKKSNS--------- 143
Query: 203 LEKYGNEKDLLAVAVVKKDSKV------Q-N----FEDLRGLKSCHSGYMDSSGWVAPVY 251
L AV + ++++ Q N FE+LR L Y
Sbjct: 144 ---------ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-----------------Y 177
Query: 252 HLLEKGLIKNDVCPYYKG-VEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTL 310
Y V F+ TL
Sbjct: 178 QT-------------YHVLVGDLIK-----------------------------FSAETL 195
Query: 311 QCL--KMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVS-----------KA 357
L DA+ FT + + E +E D+ ++L S P+S
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-DYLLS----IPISCPLIGVIQLAHYV 250
Query: 358 ADCN-LGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLF 416
LG P + + ++ I D F + VLF
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD---SWESFFVSVRKAI---TVLF 304
Query: 417 LNPATGVESL---PDQA---TDVETNFSNN------MLSKVMYCSG 450
GV P+ + + +E + NN MLS S
Sbjct: 305 F---IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS----ISN 343
Score = 47.0 bits (111), Expect = 1e-05
Identities = 76/494 (15%), Positives = 142/494 (28%), Gaps = 169/494 (34%)
Query: 15 MGFPLSPILSSTCEESP--SFE-----VFWSVRLRIL-----H-----ITRSSKTLNYKA 57
+G+ +SS E S F+ L H + + + T K
Sbjct: 65 LGY-----VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 58 KGSIKSFKLGLVAGFSSEVSSKSSKTLNYKAGGCIKSFKL----GLVAGFSSEVSSKVYG 113
K IK++ + +S G + + G + E+ +Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR-DLY- 177
Query: 114 LRPTIYRSILPKVVLTADWRQYLPVYSNLASCKLRSATHYQVDLTDISHW-RRSSRNSSV 172
Y ++ ++ + + L S L L + + L +I W S
Sbjct: 178 ---QTYHVLVGDLIKFS--AETL---SELIRTTLDAEKVFTQGL-NILEWLENPSNTPD- 227
Query: 173 KCLYQDYLVNRFGSLGGAAKSVWLPF----Q-------CRNLEKY------------GNE 209
+DYL++ S P Q + L G+
Sbjct: 228 ----KDYLLS-------IPIS--CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 210 KDLL-AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYK 268
+ L+ AVA+ + DS ++F V +L ++
Sbjct: 275 QGLVTAVAIAETDSW-ESFFVS----------------VRKAITVL-----------FFI 306
Query: 269 GVE--QFFSGGSCVPG-----LEEKEKSESPSLEKICHNITTIFATNTLQCLKMGDADVA 321
GV + + S P LE E SP L N+T
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS--ISNLTQ------------------ 346
Query: 322 FTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVV--PPHMVVTSNSKS-- 377
E +++ + K + P K + +V ++VV+ +S
Sbjct: 347 --------EQVQDYVNKTNS---------HLPAGKQV--EISLVNGAKNLVVSGPPQSLY 387
Query: 378 NMEIDIIKHAIITAAD----LFSK-KPEIFKLFGSFMGKPDVLF----LNPATGVESLPD 428
+ + + K + D FS+ K + F + P F L PA+ + +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASP---FHSHLLVPAS--DLINK 441
Query: 429 QATDVETNFSNNML 442
+F+ +
Sbjct: 442 DLVKNNVSFNAKDI 455
Score = 36.2 bits (83), Expect = 0.024
Identities = 49/308 (15%), Positives = 83/308 (26%), Gaps = 128/308 (41%)
Query: 175 LYQDYLVNRFGSLGGAAKSVW----LPFQCRNLEKYGNEKDLLAVAVVKKD--SKVQNFE 228
LY+ AA+ VW F+ + YG + +V + + +F
Sbjct: 1635 LYKTS---------KAAQDVWNRADNHFK----DTYG----FSILDIVINNPVNLTIHFG 1677
Query: 229 DLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEK 288
+G K Y A ++ + G +K E+ F E E
Sbjct: 1678 GEKG-KRIRENYS------AMIFETIVDGKLKT---------EKIFK--------EINEH 1713
Query: 289 SESPSLEKICHNITTIFAT-NTLQCLKMGDADVA-FTNQVKVNEAI-EEGIFKVDEI--- 342
S S + + AT T Q A + E + +G+ D
Sbjct: 1714 STSYTFR---SEKGLLSATQFT-Q--------PALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 343 ----EF--LCSKGG-------------R-------APVSKAADCNLGV--VPPHMVVTS- 373
E+ L S R P + N G+ + P V S
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 374 -------------------------NSKSNMEIDII---KHAIITAADLFS----KKPEI 401
N N + + A+ T ++ + +K +I
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNV-ENQQY-VAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 402 FKLFGSFM 409
+L S
Sbjct: 1880 IELQKSLS 1887
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate
binding protein, transport protein; 1.71A {Escherichia
coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Length = 321
Score = 44.8 bits (106), Expect = 3e-05
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 38/133 (28%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHS-GYMD---SSGWVAPVYHLLEKGLIKNDVCPYYKG 269
+V +V KDS + N DL + + G D +SG++ P Y++ K I +K
Sbjct: 104 SVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISAS---DFKR 160
Query: 270 VEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVN 329
+ G H + DVA N ++
Sbjct: 161 T---VNAG---------------------HE-------TNALAVANKQVDVATNNTENLD 189
Query: 330 EAIEEGIFKVDEI 342
+ K+ E+
Sbjct: 190 KLKTSAPEKLKEL 202
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural
genomics, joint center for structural genomics; HET:
UNL; 1.97A {Pseudomonas aeruginosa}
Length = 310
Score = 42.1 bits (99), Expect = 2e-04
Identities = 26/200 (13%), Positives = 59/200 (29%), Gaps = 57/200 (28%)
Query: 214 AVAVVKKDSKVQNFEDL----RGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKG 269
++ + KDSK+ + ED+ + L + +SG++ P Y++ K + K
Sbjct: 94 SLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPV-----KA 148
Query: 270 VEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVN 329
++ + H + DVA N +
Sbjct: 149 FKRTLNSS---------------------HE-------VNALAVANKQVDVATFNTEGME 180
Query: 330 EAIEEGIFKVDEIEFL-CSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAI 388
K +++ + S +P +V N+ S+ + + ++
Sbjct: 181 RLELTQPEKARQLKVIWKSPL---------------IPGDPLVWRNNLSDEQKNKLRDFF 225
Query: 389 ITAADLFSKKPEIFKLFGSF 408
+ E K+
Sbjct: 226 FK----YGANAEQKKVLADL 241
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-BIND protein; HET: CYS GOL;
1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Length = 283
Score = 31.6 bits (72), Expect = 0.52
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 214 AVAVVKKDSKVQNFEDLRGLK 234
AV V DS +++ D++G+K
Sbjct: 146 AVLVAHNDSNIKSIADIKGVK 166
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER
bacterium, transport protein; HET: LYS; 1.79A
{Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Length = 272
Score = 30.8 bits (70), Expect = 0.72
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 215 VAVVKKDSKVQNFEDLRGLK 234
V +VK+ S V+N DL+G
Sbjct: 130 VILVKQGSPVKNALDLKGKT 149
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein;
protein structure initiative II(PSI II), nysgxrc; 1.90A
{Streptococcus thermophilus lmg 18311}
Length = 268
Score = 30.8 bits (70), Expect = 0.78
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 214 AVAVVKKDSKVQNFEDLRGLK 234
V V KK S + + + G
Sbjct: 109 QVLVTKKSSGIDSVAGMAGKT 129
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine
transport system, protein structure initiative II(PSI
II); 2.06A {Legionella pneumophila subsp}
Length = 237
Score = 30.3 bits (69), Expect = 0.92
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 214 AVAVVKKDSKVQNFEDLRGLK 234
+ + DSK+ F+DL G K
Sbjct: 92 SQYITTVDSKISTFDDLHGKK 112
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA;
structural genomics; 2.60A {Methylobacillus flagellatus}
Length = 348
Score = 30.6 bits (69), Expect = 1.1
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 217 VVKKDSKVQNFEDLRGLK-SCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYY 267
VV K+S ++ +DL+G K + H G +A L +GL D
Sbjct: 104 VVPKNSTAKSIKDLKGKKIALHRG---RPWELAFSNLLQSEGLTFKDFKIVN 152
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein,
glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus
thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Length = 314
Score = 30.0 bits (68), Expect = 1.5
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 210 KDLLAVA---------VVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIK 260
K + A+A V +KD+ ++ DL+G K G + S L GL
Sbjct: 100 KTIRALAALYPEVVHVVARKDAGIRTVADLKG-KRVVVGDVGSGTEQNARQILEAYGLTF 158
Query: 261 ND 262
+D
Sbjct: 159 DD 160
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, immune
system; 1.90A {Ehrlichia chaffeensis}
Length = 327
Score = 30.1 bits (68), Expect = 1.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 204 EKYGNEKDLLAVA---------VVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLL 254
EK +L +A VVKK S + +D++G K + G + VA + L
Sbjct: 109 EKMLPMDNLRMLASLHKEYLTIVVKKSSNISVIDDIKG-KRVNIGSPGTGVRVAMLKLLG 167
Query: 255 EKGLIKND 262
EKG K D
Sbjct: 168 EKGWTKKD 175
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 29.5 bits (66), Expect = 2.3
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 137 PVYSNLASCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQDYL 180
P ++ A + R A Y +D S RRS N S++ LY YL
Sbjct: 388 PRSTDKAITQKRQAALYNLDEK--STLRRSHENPSIRELYDTYL 429
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella
enterica subsp}
Length = 229
Score = 29.1 bits (66), Expect = 2.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 214 AVAVVKKDSKVQNFEDLRGLK 234
+ VV + F DL+G K
Sbjct: 94 SAVVVTRKGAYHTFADLKGKK 114
>2vha_A Periplasmic binding transport protein; periplasmic binding protein,
ligand binding, ultrahigh resolution; HET: GLU; 1.00A
{Shigella flexneri} PDB: 2ia4_A*
Length = 287
Score = 28.9 bits (65), Expect = 3.0
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 217 VVKKDSKVQNFEDLRGLKSC 236
+ KK +++F DL+G
Sbjct: 115 LTKKGGDIKDFADLKGKAVV 134
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate,
transport, ABC transport, virulence factor, receptor;
1.49A {Campylobacter jejuni}
Length = 259
Score = 28.9 bits (65), Expect = 3.6
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 217 VVKKDSKVQNFEDLRGLKSC 236
+V K+ K ++ D++G
Sbjct: 133 LVLKEKKYKSLADMKGANIG 152
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein
YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics,
PSI-2; 2.00A {Bacillus subtilis}
Length = 258
Score = 28.8 bits (65), Expect = 3.6
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 213 LAVAVVKKDSKVQNFEDLRGLK 234
L + V++ + ++ EDL+G +
Sbjct: 106 LKITVLQNNDTIRGIEDLKGKR 127
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein,
periplasmic-binding P transport protein; HET: MPO; 1.70A
{Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Length = 324
Score = 28.6 bits (64), Expect = 4.2
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 217 VVKKDSKVQNFEDLRG 232
+V S ++ DL+G
Sbjct: 116 LVPSKSALRTVADLKG 131
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport
protein; 1.75A {Escherichia coli}
Length = 308
Score = 28.6 bits (64), Expect = 4.3
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 217 VVKKDSKVQNFEDLRG 232
+V ++S ++ DL+G
Sbjct: 90 LVAENSPIKTVADLKG 105
>3h92_A Uncharacterized ATP-binding protein mjecl15; protein with unknown
function, structural genomics, PSI; HET: PG6; 2.20A
{Methanocaldococcus jannaschii}
Length = 92
Score = 26.4 bits (58), Expect = 6.2
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 378 NMEIDIIKHAIITAADLFSKKPEIF-----KLFGSFMGKPDVLFLNPATGV 423
I ++ A LF E+ + F+ K ++LFLNP G
Sbjct: 26 EDYEGINYDEVLEALKLFKDNYELPKSKIKRKIRIFLIKENILFLNPQKGT 76
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 28.3 bits (63), Expect = 6.5
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 151 THYQVDLTDISHWRRSSRNSSVKCLYQDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEK 210
+HY + D+ H R K L + + FG+L F R L++ G K
Sbjct: 381 SHYMKN-FDVGH--VPIRLPRTKHLL-NVINENFGTL---------AFCRRWLDRLGESK 427
Query: 211 DLLAVAVVKKDSKVQNFEDL 230
L+A+ + V + L
Sbjct: 428 YLMALKNLCDLGIVDPYPPL 447
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics,
GLUT seattle structural genomics center for infectious
disease; 2.40A {Burkholderia pseudomallei}
Length = 249
Score = 27.6 bits (62), Expect = 6.8
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 213 LAVAVVKKDSKVQNFEDLRGLK 234
LA V ++ +++ +DL G
Sbjct: 111 LAAMVQANNTTIKSIDDLNGKV 132
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 27.7 bits (62), Expect = 8.1
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 217 VVKKDSKVQNFEDLRGLKSC 236
V K+ + + L+
Sbjct: 149 VSPKNKPITDMAQLKDQTLL 168
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic
protein, arginine protein binding, transport protein;
1.92A {Chlamydia trachomatis}
Length = 242
Score = 27.6 bits (62), Expect = 8.3
Identities = 2/22 (9%), Positives = 5/22 (22%)
Query: 213 LAVAVVKKDSKVQNFEDLRGLK 234
+ +V K +
Sbjct: 99 KHLVLVFKGENKHPLPLTQYRS 120
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 27.8 bits (62), Expect = 9.0
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 146 KLRSATHYQVDLTDISHWRRSSRNSSVKCLYQDYL 180
K+R++ Y D + R+S N+++ +YQ+Y
Sbjct: 524 KVRASVLYNQD--EHLSKRKSHENTALVKMYQNYF 556
>3bjo_A Uncharacterized ATP-binding protein MJ1010; APC87992.1, structur
genomics, PSI-2; 2.05A {Methanocaldococcus jannaschii
dsm 2661ORGANISM_TAXID}
Length = 103
Score = 26.2 bits (57), Expect = 9.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 380 EIDIIKHAIITAADLFSKKPE-----IFKLFGSFMGKPDVLFLNPATGV 423
I+I K II A LF K E I K ++ K ++LFL P G
Sbjct: 39 IIEIRKEDIINALKLFKGKYEIEVDKIPKAVYVYLVKKNILFLYPQRGT 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,611,758
Number of extensions: 378590
Number of successful extensions: 708
Number of sequences better than 10.0: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 51
Length of query: 453
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 356
Effective length of database: 3,993,456
Effective search space: 1421670336
Effective search space used: 1421670336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)