RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11919
(453 letters)
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo
(Bubalus arnee bubalis) [TaxId: 89462]}
Length = 333
Score = 142 bits (358), Expect = 3e-39
Identities = 71/227 (31%), Positives = 100/227 (44%), Gaps = 14/227 (6%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
AVAVVKK S + L+G SCH+G S+GW P+ L + P V +F
Sbjct: 94 AVAVVKKGSNF-QLDQLQGRNSCHTGLGRSAGWNIPMGILRPYLSWTESLEPLQGAVAKF 152
Query: 274 FSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNT--------LQCLKMGDADVAFTNQ 325
FS SCVP ++ + L K + +CL+ G DVAF +
Sbjct: 153 FS-ASCVPCVDRQAYPNLCQLCKGEGENQCACSPREPYFGYSGAFKCLQDGAGDVAFVKE 211
Query: 326 VKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385
V E + D+ E LC RAPV +C+L VP H VV + + D+I
Sbjct: 212 TTVFENL-PEKADRDQYELLCLNNTRAPVDAFKECHLAQVPSHAVVA--RSVDGKEDLIW 268
Query: 386 HAIITAADLFSKKPE-IFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
+ A + F K F+LFGS G+ D+LF + A G +P +
Sbjct: 269 KLLSKAQEKFGKNKSGSFQLFGSPPGQRDLLFKDSALGFLRIPSKVD 315
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 138 bits (348), Expect = 8e-38
Identities = 77/241 (31%), Positives = 108/241 (44%), Gaps = 18/241 (7%)
Query: 204 EKYGNEKDLL----AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E YG E+ AVAVVKK +L+GLKSCH+G ++GW P+ L
Sbjct: 77 EVYGTERQPRTHYYAVAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLDW 135
Query: 260 KNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNT--------LQ 311
P V +FFS SCVPG ++ + L F++ +
Sbjct: 136 TGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFK 194
Query: 312 CLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVV 371
CL+ G DVAF + V E + + + + E LC R PV K DC+L VP H VV
Sbjct: 195 CLRDGAGDVAFIKESTVFEDLSDEAERDEY-ELLCPDNTRKPVDKFKDCHLARVPSHAVV 253
Query: 372 TSNSKSNMEIDIIKHAIITAADLFSKK-PEIFKLFGSFMGKPDVLFLNPATGVESLPDQA 430
N + D I + + A + F K F+LFGS G+ D+LF + A G +P +
Sbjct: 254 A--RSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRI 311
Query: 431 T 431
Sbjct: 312 D 312
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 329
Score = 130 bits (328), Expect = 6e-35
Identities = 74/244 (30%), Positives = 103/244 (42%), Gaps = 24/244 (9%)
Query: 204 EKYGNEKD----LLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E Y + + AVAVVKK ++ DL+G SCH+G S+GW P+ LL +G I
Sbjct: 77 EVYEHTEGSTTSYYAVAVVKKGTEF-TVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAI 135
Query: 260 K---NDVCPYYKGVEQFFSGGSCVPGLEEKEKSES---PSLEKICHNITTIF-ATNTLQC 312
+ + + V +FFS SCVPG ++K + C + C
Sbjct: 136 EWEGIESGSVEQAVAKFFS-ASCVPGATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHC 194
Query: 313 LKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVT 372
LK G DVAF VNE + + DE E LC G R PV CN V H VV
Sbjct: 195 LKDGKGDVAFVKHTTVNENAPD---QKDEYELLCLDGSRQPVDNYKTCNWARVAAHAVVA 251
Query: 373 SNSKSNMEIDIIKHAIITAADLFSKK-PEIFKLFGSFMGKP----DVLFLNPATGVESLP 427
+ +++ I + A F F LFG K D+LF + A ++ +P
Sbjct: 252 R---DDNKVEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVP 308
Query: 428 DQAT 431
Sbjct: 309 SLMD 312
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 127 bits (321), Expect = 5e-34
Identities = 78/236 (33%), Positives = 105/236 (44%), Gaps = 16/236 (6%)
Query: 204 EKYGNEKD----LLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
E YG+++D AVAVVKKDS LRG KSCH+G S+GW P+ L
Sbjct: 80 EFYGSKEDPQTFYYAVAVVKKDSGF-QMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLP- 137
Query: 260 KNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSL---EKICHNITTIFATNTLQCLKMG 316
P K V FFS GSC P + + + L + +CLK G
Sbjct: 138 -EPRKPLEKAVANFFS-GSCAPCADGTDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDG 195
Query: 317 DADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSK 376
DVAF + E + + D+ E LC R PV + DC+L VP H VV
Sbjct: 196 AGDVAFVKHSTIFENLANKADR-DQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVA--RS 252
Query: 377 SNMEIDIIKHAIITAADLFSKK-PEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
+ D+I + A + F K + F+LF S GK D+LF + A G +P +
Sbjct: 253 MGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVPPRMD 307
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos)
[TaxId: 8839]}
Length = 159
Score = 116 bits (293), Expect = 7e-32
Identities = 58/160 (36%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIK---NDVCPYYKGV 270
AVAVVKK + +DLRG SCH+G S+GW P+ L+ +G I+ + + V
Sbjct: 4 AVAVVKKGTDF-MIKDLRGKTSCHTGLGRSAGWNIPIGTLIHRGDIEWEGIESGSVEQAV 62
Query: 271 EQFFSGGSCVPGLEEKEK----SESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQV 326
+FFS SCVPG ++K + + K N + QCLK G DVAF
Sbjct: 63 AKFFS-ASCVPGATTEQKLCRQCKGDAKTKCLRNAPYSGYSGAFQCLKDGKGDVAFVKHT 121
Query: 327 KVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVP 366
V E E + DE E LC G R PV CN V
Sbjct: 122 TVQENAPE---EKDEYELLCLDGTRQPVDSYKTCNWARVA 158
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 159
Score = 113 bits (285), Expect = 1e-30
Identities = 53/158 (33%), Positives = 71/158 (44%), Gaps = 11/158 (6%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
AVAVVKK +L+GLKSCH+G ++GW P+ L P V +F
Sbjct: 4 AVAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARF 62
Query: 274 FSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNT--------LQCLKMGDADVAFTNQ 325
FS SCVPG ++ + L F++ +CLK G DVAF +
Sbjct: 63 FS-ASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLKDGAGDVAFIRE 121
Query: 326 VKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLG 363
V E + + + DE E LC R PV K DC+L
Sbjct: 122 STVFEDLSDEAER-DEYELLCPDNTRKPVDKFKDCHLA 158
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId:
9913]}
Length = 344
Score = 114 bits (285), Expect = 8e-29
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 26/233 (11%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
AVAVVKK ++ + L+ KSCH+ ++GW P+ ++ + ++F
Sbjct: 94 AVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCA--------FDEF 145
Query: 274 FSGGSCVPGLEEKEK-------SESPSLEKICHNITTIFA-TNTLQCLKMGDADVAFTNQ 325
FS SC PG + K + + + + ++ + T +CL DVAF
Sbjct: 146 FSQ-SCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKN 204
Query: 326 VKVNEAIEEGI-------FKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSN 378
V E K ++ LC G R PV++A C+L V P H VV+ + ++
Sbjct: 205 DTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAA 264
Query: 379 MEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
++ H P+ F LF S ++LF + + L + T
Sbjct: 265 HVEQVLLHQQALFGKNGKNCPDKFCLFKS--ETKNLLFNDNTECLAKLGGRPT 315
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId:
9823]}
Length = 346
Score = 108 bits (270), Expect = 9e-27
Identities = 63/255 (24%), Positives = 96/255 (37%), Gaps = 32/255 (12%)
Query: 214 AVAVVKKDSK-VQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQ 272
AVAVVKK S N+ +L+G KSCH+ ++GW P+ L K +Q
Sbjct: 92 AVAVVKKSSGPDLNWNNLKGKKSCHTAVDRTAGWNIPMGLLYNKINSCK--------FDQ 143
Query: 273 FFSGGSCVPGLEEKEK-------SESPSLEKICHNITTIFA--TNTLQCLKMGDADVAFT 323
FF G C PG + SE + N + T +CL + DVAF
Sbjct: 144 FF-GEGCAPGSQRNSSLCALCIGSERAPGRECLANNHERYYGYTGAFRCL-VEKGDVAFV 201
Query: 324 NQVKV-------NEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSK 376
V N+ K + E LC G R PV A +C+L P H VV + K
Sbjct: 202 KDQVVQQNTDGKNKDDWAKDLKQMDFELLCQNGAREPVDNAENCHLARAPNHAVVARDDK 261
Query: 377 SNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQATD--VE 434
+ + + F +F S D+LF + + + + +
Sbjct: 262 VTCVAEELLKQQAQFGRHVTDCSSSFCMFKS--NTKDLLFRDDTQCLARVGKTTYESYLG 319
Query: 435 TNFSNNMLSKVMYCS 449
++ ++ + CS
Sbjct: 320 ADYI-TAVANLRKCS 333
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 325
Score = 105 bits (263), Expect = 5e-26
Identities = 61/240 (25%), Positives = 89/240 (37%), Gaps = 25/240 (10%)
Query: 205 KYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVC 264
+ E AVAVVKK + +++L+G KSCH+ ++GW P+ L K
Sbjct: 80 EDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKINHCRFD- 138
Query: 265 PYYKGVEQFFSGGSCVPGLEEKEK----SESPSLEKICHNITTIFA--TNTLQCLKMGDA 318
+FF C PG ++ L N + T +CL +
Sbjct: 139 -------EFF-SEGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCL-VEKG 189
Query: 319 DVAFTNQVKVNEAIEEGI-------FKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVV 371
DVAF V + + E LC G R PV + A+C+L P H VV
Sbjct: 190 DVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVV 249
Query: 372 TSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
T K I++ + F LF S D+LF + + L D+ T
Sbjct: 250 TRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 307
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 352
Score = 101 bits (252), Expect = 2e-24
Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 32/235 (13%)
Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
AVAV +KDS V N+ +L+G KSCH+ ++GWV P+ + + N +++
Sbjct: 99 AVAVARKDSNV-NWNNLKGKKSCHTAVGRTAGWVIPMGLIHNRTGTCN--------FDEY 149
Query: 274 FSGGSCVPGLEEK-------EKSESPSLEKICHNITTIFA--TNTLQCLKMGDADVAFTN 324
F C PG + S EK + + T L+CL + DVAF
Sbjct: 150 F-SEGCAPGSPPNSRLCQLCQGSGGIPPEKCVASSHEKYFGYTGALRCL-VEKGDVAFIQ 207
Query: 325 QVKV-------NEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKS 377
V N+A ++D+ E LC+ G RA V +CNL VP H VV K+
Sbjct: 208 HSTVEENTGGKNKADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVRPEKA 267
Query: 378 NMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGK-PDVLFLNPATGVESLPDQAT 431
+ I+ + F F F + D+LF + + + + T
Sbjct: 268 ----NKIRDLLERQEKRFGVNGSEKSKFMMFESQNKDLLFKDLTKCLFKVREGTT 318
>d2fpna1 d.129.10.1 (A:1-214) Hypothetical protein YwmB {Bacillus
subtilis [TaxId: 1423]}
Length = 214
Score = 30.7 bits (69), Expect = 0.26
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 371 VTSNSKSNMEIDIIKHAIITAADLFSKKPEIFK-LFGSFMGKPD---------VLFLNPA 420
S + D + +F +K IF L G + +L A
Sbjct: 97 QMSLETPDSWNDTYEQFERETLGIFQEKVVIFTCLNGHLDDNMNIVLQKKANQLLNEFQA 156
Query: 421 TGVESLPDQATDVETNFSNNMLSKVMYCSGKAN 453
VE + + + F++ +M K N
Sbjct: 157 RSVEHVVEPNFVSISAFTDEWEEYIMTSKHKMN 189
>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 88
Score = 27.5 bits (61), Expect = 0.85
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 148 RSATHYQVDLTDISHWRRSSRNSSVKCLYQDYL 180
R Y D R S N+ VK LY+ YL
Sbjct: 11 RINGVYGADAK--FPVRASQDNTQVKALYKSYL 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,619,578
Number of extensions: 73157
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 14
Length of query: 453
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,199,356
Effective search space: 437764940
Effective search space used: 437764940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)