BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1192
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/111 (49%), Positives = 69/111 (62%), Gaps = 20/111 (18%)
Query: 1 IHLENIQIIFLSHNFP-------------GKLLHKDLDDRALDALKEYPSEGAIAVLNQF 47
IH EN Q + L P G + H DLD+RA++ALKE+ +GA+AVL QF
Sbjct: 22 IHSENFQTL-LDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQF 80
Query: 48 LESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPDEEKIK 98
+S+L HV NKSAFLCG+MKTYRQ+ + G VA +S KGPDE KIK
Sbjct: 81 KDSDLSHVQNKSAFLCGVMKTYRQREKQGTK-VADSS-----KGPDEAKIK 125
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/111 (49%), Positives = 69/111 (62%), Gaps = 20/111 (18%)
Query: 1 IHLENIQIIFLSHNFP-------------GKLLHKDLDDRALDALKEYPSEGAIAVLNQF 47
IH EN Q + L P G + H DLD+RA++ALKE+ +GA+AVL QF
Sbjct: 22 IHSENFQTL-LDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQF 80
Query: 48 LESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPDEEKIK 98
+S+L HV NKSAFLCG+MKTYRQ+ + G VA +S KGPDE KIK
Sbjct: 81 KDSDLSHVQNKSAFLCGVMKTYRQREKQGTK-VADSS-----KGPDEAKIK 125
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 95.9 bits (237), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 6/82 (7%)
Query: 17 GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
G + + DLD+RA+DAL+E+ EGA++VL QF ES+L HV NKSAFLCG+MKTYRQ+ + G
Sbjct: 53 GLVAYVDLDERAIDALREFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQG 112
Query: 77 MAGVASTSAVLTLKGPDEEKIK 98
ST KGPDE KIK
Sbjct: 113 SKVQEST------KGPDEAKIK 128
>sp|O27038|VATC_METTH V-type ATP synthase subunit C OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=atpC PE=3 SV=1
Length = 385
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 30 DALKEYPSEGAIAVLNQFLESNLEHVSNKSAF 61
+AL EY S G++AV + LE NL ++ A
Sbjct: 309 EALSEYTSTGSVAVFERVLEDNLNRMARNFAL 340
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,871,423
Number of Sequences: 539616
Number of extensions: 1299855
Number of successful extensions: 3187
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3180
Number of HSP's gapped (non-prelim): 5
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)