Query psy1192
Match_columns 108
No_of_seqs 46 out of 48
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 22:20:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k6x_A Sigma-A, RNA polymerase 57.2 11 0.00039 23.4 3.4 48 2-53 3-58 (72)
2 1nvp_D Transcription initiatio 49.2 16 0.00055 25.4 3.4 30 5-50 13-42 (108)
3 2xns_C RGS14, regulator of G-p 48.7 6.4 0.00022 23.6 1.1 21 15-35 20-40 (40)
4 1nh2_D Transcription initiatio 42.9 22 0.00077 25.2 3.4 49 5-70 17-69 (121)
5 1o17_A Anthranilate PRT, anthr 38.1 40 0.0014 26.8 4.5 32 33-65 14-45 (345)
6 4hkm_A Anthranilate phosphorib 37.0 24 0.00083 27.8 3.1 32 33-65 17-48 (346)
7 4gwp_A Mediator of RNA polymer 35.6 96 0.0033 22.0 5.7 57 3-72 3-59 (115)
8 3r84_A Mediator of RNA polymer 34.6 67 0.0023 21.5 4.5 47 5-64 2-48 (86)
9 3bcz_A Protein MEMO1; alpha/be 33.5 26 0.00089 26.8 2.7 46 23-70 211-256 (293)
10 3fxd_A Protein ICMQ; helix bun 30.5 70 0.0024 20.3 3.9 38 34-71 4-41 (57)
11 2elc_A Trp D, anthranilate pho 29.3 39 0.0013 26.6 3.1 32 33-65 11-42 (329)
12 3h5q_A PYNP, pyrimidine-nucleo 28.5 73 0.0025 26.5 4.7 32 33-65 17-48 (436)
13 3cue_D Transport protein parti 27.3 23 0.00078 26.4 1.3 20 54-73 136-155 (193)
14 1vqu_A Anthranilate phosphorib 26.5 45 0.0016 26.8 3.1 32 33-65 38-69 (374)
15 1khd_A Anthranilate phosphorib 26.3 44 0.0015 26.6 2.9 32 33-65 24-55 (345)
16 1z0p_A Hypothetical protein SP 26.1 16 0.00054 24.9 0.2 23 10-32 23-45 (84)
17 2her_A Fragment, farnesyl pyro 25.6 39 0.0013 27.3 2.5 23 8-37 291-313 (368)
18 1wj7_A Hypothetical protein (R 25.5 84 0.0029 21.7 3.9 41 5-48 22-65 (104)
19 2joj_A Centrin protein; N-term 25.2 42 0.0015 18.6 2.0 54 16-70 21-74 (77)
20 2c0j_B R32611_2; palmitate; HE 24.6 28 0.00095 25.0 1.3 20 55-74 117-136 (160)
21 2j3w_B ZGC 92866, trafficking 24.4 30 0.001 25.6 1.5 17 57-73 138-154 (188)
22 2cly_C ATP synthase coupling f 24.1 43 0.0015 22.3 2.1 10 65-74 15-24 (77)
23 1sz7_A BET3 homolog, trafficki 23.9 25 0.00086 26.5 1.0 18 56-73 134-151 (200)
24 2bjn_A TPC6, trafficking prote 23.7 30 0.001 24.8 1.3 19 55-73 117-135 (160)
25 3u8p_A Cytochrome B562 integra 23.3 86 0.0029 26.0 4.1 37 26-77 116-152 (347)
26 1jog_A Hypothetical protein HI 22.4 1.4E+02 0.0047 20.7 4.6 45 2-49 76-127 (146)
27 2tpt_A Thymidine phosphorylase 22.1 61 0.0021 26.9 3.1 32 33-65 15-46 (440)
28 2p1h_A APAF-1, apoptotic prote 21.9 26 0.0009 22.0 0.7 40 5-47 23-62 (94)
29 1wji_A Tudor domain containing 21.9 1.2E+02 0.0043 18.5 3.8 26 23-48 7-34 (63)
30 1brw_A PYNP, protein (pyrimidi 21.8 62 0.0021 26.8 3.0 32 33-65 14-45 (433)
31 2nz7_A NOD1, caspase recruitme 21.8 25 0.00085 23.5 0.6 40 5-47 28-67 (98)
32 1avs_A Troponin C; muscle cont 20.7 95 0.0032 18.0 3.0 53 16-69 34-86 (90)
33 3cl3_A ORF K13, KS-vflip; deat 20.3 1.6E+02 0.0056 21.4 4.8 49 5-54 134-182 (183)
34 1uou_A Thymidine phosphorylase 20.0 71 0.0024 26.9 3.1 32 33-65 41-72 (474)
No 1
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=57.19 E-value=11 Score=23.42 Aligned_cols=48 Identities=10% Similarity=0.134 Sum_probs=35.4
Q ss_pred chhhHHHHHHHHh----cCCCCCcccchHHHHHHhhc----CChHHHHHHHHHHhhcccc
Q psy1192 2 HLENIQIIFLSHN----FPGKLLHKDLDDRALDALKE----YPSEGAIAVLNQFLESNLE 53 (108)
Q Consensus 2 ~~~~iq~~l~~iy----~sG~l~~~DLDeRAidaLke----f~~e~Al~vl~qF~eS~L~ 53 (108)
|-..++..+.+|. +.|.|+++|+ .++|.+ ++.++.-.++..+.+....
T Consensus 3 ~m~~~~~~~k~Li~~gK~~G~lTy~EI----~d~l~~~~~~ld~e~id~i~~~L~~~gI~ 58 (72)
T 2k6x_A 3 HMPQIERRIKKLISLGKKKGYITYEDI----DKAFPPDFEGFDTNLIERIHEELEKHGIN 58 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCBHHHH----HHHCSCSCSSCCHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHHHHhHcCCccHHHH----HHhCccccccCCHHHHHHHHHHHHHCCCc
Confidence 5556677777777 6778998887 566776 7888888888888776543
No 2
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=49.18 E-value=16 Score=25.37 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=22.6
Q ss_pred hHHHHHHHHhcCCCCCcccchHHHHHHhhcCChHHHHHHHHHHhhc
Q psy1192 5 NIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLES 50 (108)
Q Consensus 5 ~iq~~l~~iy~sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF~eS 50 (108)
..+..|++++..|.|+| +.|..||+||..|
T Consensus 13 aL~dtLdEli~~~~Isp----------------~la~kVL~~FDks 42 (108)
T 1nvp_D 13 SLQESLDELIQSQQITP----------------QLALQVLLQFDKA 42 (108)
T ss_dssp HHHHHHHHHHHTTSSCH----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHH
Confidence 35677888888888765 5678888888765
No 3
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=48.73 E-value=6.4 Score=23.62 Aligned_cols=21 Identities=14% Similarity=0.049 Sum_probs=17.1
Q ss_pred cCCCCCcccchHHHHHHhhcC
Q psy1192 15 FPGKLLHKDLDDRALDALKEY 35 (108)
Q Consensus 15 ~sG~l~~~DLDeRAidaLkef 35 (108)
+.|+++.|||---.-|+||||
T Consensus 20 QRGLL~KEdLv~~l~df~r~~ 40 (40)
T 2xns_C 20 QRGLLSNEEVFRALRDFDRWF 40 (40)
T ss_dssp CSSSCCHHHHHHHHHHHTCC-
T ss_pred ccccccHHHHHHHhHHHHhcC
Confidence 579999999977677999987
No 4
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=42.93 E-value=22 Score=25.23 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCCCCCcccchHHHHHHhhcCChHHHHHHHHHHhhcc---cc-cccchhHHHHHHHHHHH
Q psy1192 5 NIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESN---LE-HVSNKSAFLCGIMKTYR 70 (108)
Q Consensus 5 ~iq~~l~~iy~sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF~eS~---L~-hV~NKSAFL~gVMKtyR 70 (108)
..+..|++++..|.|+| +.|..||+||..|= |. +|.+|.-|= |-+.+||
T Consensus 17 aL~dtLdEli~~~~Isp----------------~la~kVL~~FDksi~~aL~~~vksk~sfK-G~L~tYr 69 (121)
T 1nh2_D 17 SLVDALDTLISDGRIEA----------------SLAMRVLETFDKVVAETLKDNTQSKLTVK-GNLDTYG 69 (121)
T ss_dssp HHHHHHHHHHHTTSSCH----------------HHHHHHHHHHHHHHHHHHHHSCCCEEEEE-EEEEEEE
T ss_pred HHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHHHHHHHHHHhccCCeEE-eeecccc
Confidence 35677888888888765 46777777777652 22 455553333 4444444
No 5
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=38.05 E-value=40 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=27.4
Q ss_pred hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192 33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI 65 (108)
Q Consensus 33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV 65 (108)
++++.++|..+++++.+-+.+-+ .-+||||++
T Consensus 14 ~~Lt~eEa~~~~~~i~~g~~~~~-QiaAfL~al 45 (345)
T 1o17_A 14 SDLEINEAEELAKAIIRGEVPEI-LVSAILVAL 45 (345)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence 57888999999999999888888 578999985
No 6
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=37.00 E-value=24 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=27.3
Q ss_pred hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192 33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI 65 (108)
Q Consensus 33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV 65 (108)
++++.|+|..+++++.+-+.+-+ .-+||||.+
T Consensus 17 ~~Lt~eEa~~~~~~il~G~~~d~-QiaAfL~al 48 (346)
T 4hkm_A 17 REIFHDEMVDLMRQIMRGEVSDA-MVSAILTGL 48 (346)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHH-HHHHHHHHH
Confidence 57888889999999999888888 469999985
No 7
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=35.61 E-value=96 Score=22.01 Aligned_cols=57 Identities=26% Similarity=0.183 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHhcCCCCCcccchHHHHHHhhcCChHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHH
Q psy1192 3 LENIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQK 72 (108)
Q Consensus 3 ~~~iq~~l~~iy~sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gVMKtyRqr 72 (108)
++.||.||+.|+ ++|.+...+|.+ |-.++.-|.+..--+...|++|=--+-.-|.+-
T Consensus 3 p~~VqERLdSL~--------~ID~kl~slL~~-----~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~L 59 (115)
T 4gwp_A 3 PPYIQERLKSLN--------DIETQLCSMLQE-----ASQVTFIFGELKRGNESVKPQFENHVKQFYERL 59 (115)
T ss_dssp -CTTHHHHHHHH--------HHHHHHHHHHHH-----HHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH--------HHHHHHHHHHHH-----HHHHHHHHHHHhccCccchHHHHHHHHHHHHHH
Confidence 578999999997 589999999975 445566665555556778999866655555443
No 8
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=34.56 E-value=67 Score=21.53 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=33.7
Q ss_pred hHHHHHHHHhcCCCCCcccchHHHHHHhhcCChHHHHHHHHHHhhcccccccchhHHHHH
Q psy1192 5 NIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCG 64 (108)
Q Consensus 5 ~iq~~l~~iy~sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF~eS~L~hV~NKSAFL~g 64 (108)
-||.||++|+ ++|......|+.+. .|++.+.+-+.++ ...|++|=-.
T Consensus 2 ~iqERL~sL~--------~ID~~i~sLL~~as--~~i~tls~~k~~~---~~~K~~F~~~ 48 (86)
T 3r84_A 2 YIQERLKSLN--------DIETQLCSMLQEAS--QVTFIFGELKRGN---ESVKPQFENH 48 (86)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHHHH--HHHHHHHHHHTTC---GGGHHHHHHH
T ss_pred cHHHHHHHHH--------HHHHHHHHHHHHHH--HHHHHhhcccCCc---HhHHHHHHHH
Confidence 3789999986 69999999998643 4566666655554 6678887443
No 9
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=33.51 E-value=26 Score=26.77 Aligned_cols=46 Identities=9% Similarity=0.157 Sum_probs=32.2
Q ss_pred cchHHHHHHhhcCChHHHHHHHHHHhhcccccccchhHHHHHHHHHHH
Q psy1192 23 DLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYR 70 (108)
Q Consensus 23 DLDeRAidaLkef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gVMKtyR 70 (108)
.+|.++|++|.+.+.++-+..+++...+ .=|..- =+-++++++..+
T Consensus 211 ~~D~~~i~~i~~~d~~~~~~~~~~~~~t-~CG~~p-i~~~l~a~~~~~ 256 (293)
T 3bcz_A 211 HLDKMGMSIIEQLDPVSFSNYLKKYHNT-ICGRHP-IGVLLNAITELQ 256 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHCCC-CTTHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCcC-cCcHHH-HHHHHHHHHHcC
Confidence 4999999999999999998888886552 122211 234556667665
No 10
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=30.47 E-value=70 Score=20.29 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q psy1192 34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQ 71 (108)
Q Consensus 34 ef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gVMKtyRq 71 (108)
++..++|.++|+-..+.==.|-=-+|-||-.|=|+.|+
T Consensus 4 ~lt~eq~~aILkaLdeaIe~GPWe~SNFLRvIGKnL~e 41 (57)
T 3fxd_A 4 QLSDEQKETILKALNDAIEKGPWDKSNFLRVIGKKLIA 41 (57)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhHHH
Confidence 57788888888888888778888899999999777665
No 11
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=29.27 E-value=39 Score=26.64 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=28.0
Q ss_pred hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192 33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI 65 (108)
Q Consensus 33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV 65 (108)
++++.++|..+++++.+-+.+-+ .-+||||.+
T Consensus 11 ~~Lt~eEa~~~~~~i~~g~~~~~-QiaAfL~al 42 (329)
T 2elc_A 11 EVLEEEEAYEVMRALMAGEVSPV-RAAGLLVAL 42 (329)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence 57889999999999999888888 678999985
No 12
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=28.54 E-value=73 Score=26.52 Aligned_cols=32 Identities=9% Similarity=0.227 Sum_probs=26.5
Q ss_pred hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192 33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI 65 (108)
Q Consensus 33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV 65 (108)
++++.++|..+++.+.+-+.+-+ .-+||||.+
T Consensus 17 ~~Lt~eEa~~~~~~i~~G~~sd~-QiaAfL~Al 48 (436)
T 3h5q_A 17 HTLTTEEINFFIGGYVKGDIPDY-QASSLAMAI 48 (436)
T ss_dssp CCCCHHHHHHHHHHHHHTSSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence 46778888999999988888887 578999986
No 13
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=27.35 E-value=23 Score=26.40 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.7
Q ss_pred cccchhHHHHHHHHHHHHHh
Q psy1192 54 HVSNKSAFLCGIMKTYRQKS 73 (108)
Q Consensus 54 hV~NKSAFL~gVMKtyRqr~ 73 (108)
+..|=++|+|||||--=.-+
T Consensus 136 ~~l~y~~f~cGIIrGaL~~~ 155 (193)
T 3cue_D 136 KSLWYSNILCGVLKGSLEMV 155 (193)
T ss_dssp TSCCTTHHHHHHHHHHHHHT
T ss_pred hCcchhhhHHHHHHHHHHhC
Confidence 55688999999998766554
No 14
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=26.52 E-value=45 Score=26.82 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=28.2
Q ss_pred hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192 33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI 65 (108)
Q Consensus 33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV 65 (108)
++++.++|..+++++.+-+.+-+ .-+||||++
T Consensus 38 ~~Lt~eEa~~~~~~il~G~~~~~-QiaAfL~Al 69 (374)
T 1vqu_A 38 ESLSRSQAAELMQGWLSEAVPPE-LSGAILTAL 69 (374)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence 57899999999999999888888 578999986
No 15
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=26.27 E-value=44 Score=26.56 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=28.3
Q ss_pred hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192 33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI 65 (108)
Q Consensus 33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV 65 (108)
++++.++|..+++++.+-+.+-+ .-+||||++
T Consensus 24 ~~Lt~eEa~~~~~~il~g~~~~~-QiaAfL~al 55 (345)
T 1khd_A 24 QSMTQEESHQLFAAIVRGELEDS-QLAAALISM 55 (345)
T ss_dssp CCCCHHHHHHHHHHHTTTCSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence 57899999999999999988888 578999985
No 16
>1z0p_A Hypothetical protein SPY1572; structural genomics, PSI, protein ST initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Streptococcus pyogenes} SCOP: a.2.18.1
Probab=26.07 E-value=16 Score=24.88 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHhcCCCCCcccchHHHHHHh
Q psy1192 10 FLSHNFPGKLLHKDLDDRALDAL 32 (108)
Q Consensus 10 l~~iy~sG~l~~~DLDeRAidaL 32 (108)
=..+-.+-+|..+|=||||.||.
T Consensus 23 e~Am~~s~kv~eED~derAkdA~ 45 (84)
T 1z0p_A 23 QLAMATSQEVAQEDGDERAKDAF 45 (84)
T ss_dssp HHHHHHHHHHC----CHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHH
Confidence 34556777889999999999985
No 17
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=25.57 E-value=39 Score=27.27 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=11.9
Q ss_pred HHHHHHhcCCCCCcccchHHHHHHhhcCCh
Q psy1192 8 IIFLSHNFPGKLLHKDLDDRALDALKEYPS 37 (108)
Q Consensus 8 ~~l~~iy~sG~l~~~DLDeRAidaLkef~~ 37 (108)
.+|.++|... | +++.+.+++.+.
T Consensus 291 ~~L~~~~~~~-----~--~~v~~li~~~g~ 313 (368)
T 2her_A 291 LKISENYGKN-----S--SLVKDCYNLLKI 313 (368)
T ss_dssp HHHHHHTTTC-----H--HHHHHHHHHTTH
T ss_pred HHHHHHhCCc-----H--HHHHHHHHHCCc
Confidence 4555555432 1 566666655543
No 18
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.46 E-value=84 Score=21.73 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=27.5
Q ss_pred hHHHHHHHHhcCCCCCcccchHHHHHHhhc---CChHHHHHHHHHHh
Q psy1192 5 NIQIIFLSHNFPGKLLHKDLDDRALDALKE---YPSEGAIAVLNQFL 48 (108)
Q Consensus 5 ~iq~~l~~iy~sG~l~~~DLDeRAidaLke---f~~e~Al~vl~qF~ 48 (108)
.=|+||-+++..+ ...|.||. |+.|.+ |+++.|..+|.+..
T Consensus 22 aeQ~rLAq~i~~~--~d~d~eek-Vk~L~EmtG~seeeAr~AL~~~n 65 (104)
T 1wj7_A 22 AEQIRLAQMISDH--NDADFEEK-VKQLIDITGKNQDECVIALHDCN 65 (104)
T ss_dssp HHHHHHHHHHHHS--CCHHHHHH-HHHHHHHTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC--CcccHHHH-HHHHHHhhCCCHHHHHHHHHHcC
Confidence 3488898888655 23455554 455554 58899999998764
No 19
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=25.20 E-value=42 Score=18.64 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=32.4
Q ss_pred CCCCCcccchHHHHHHhhcCChHHHHHHHHHHhhcccccccchhHHHHHHHHHHH
Q psy1192 16 PGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYR 70 (108)
Q Consensus 16 sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gVMKtyR 70 (108)
+|.|+.+|+-.-....=..++.+.+..++.++. .|=.|.=+..-|+.-+.+.++
T Consensus 21 ~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~~~g~i~~~eF~~~~~~~~~ 74 (77)
T 2joj_A 21 TGSIDYHELKVAMRALGFDVKKPEILELMNEYD-REGNGYIGFDDFLDIMTEKIK 74 (77)
T ss_dssp SSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHC-CSSSSEEEHHHHHHHHTHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHC-CCCCCcCcHHHHHHHHHHHhc
Confidence 678888887643333323456666667777663 444454477777766655554
No 20
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=24.58 E-value=28 Score=24.97 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.3
Q ss_pred ccchhHHHHHHHHHHHHHhh
Q psy1192 55 VSNKSAFLCGIMKTYRQKSR 74 (108)
Q Consensus 55 V~NKSAFL~gVMKtyRqr~r 74 (108)
..|=++|+|||||--=+.+.
T Consensus 117 ~l~y~~f~cGiIrGaL~~lg 136 (160)
T 2c0j_B 117 APKFLAFTCGLLRGALYTLG 136 (160)
T ss_dssp GGGGTHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHCC
Confidence 45679999999997766543
No 21
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=24.38 E-value=30 Score=25.65 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHHHHHh
Q psy1192 57 NKSAFLCGIMKTYRQKS 73 (108)
Q Consensus 57 NKSAFL~gVMKtyRqr~ 73 (108)
|=++|+|||||-.=+.+
T Consensus 138 ~y~~f~cGiIrGaL~~~ 154 (188)
T 2j3w_B 138 NCAAFTGGIVEAILTHS 154 (188)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHC
Confidence 57999999998765543
No 22
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=24.08 E-value=43 Score=22.32 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=8.3
Q ss_pred HHHHHHHHhh
Q psy1192 65 IMKTYRQKSR 74 (108)
Q Consensus 65 VMKtyRqr~r 74 (108)
=||.|++|+.
T Consensus 15 KIREYk~Ks~ 24 (77)
T 2cly_C 15 KIREYRTKRQ 24 (77)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcc
Confidence 4799999977
No 23
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=23.88 E-value=25 Score=26.49 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.0
Q ss_pred cchhHHHHHHHHHHHHHh
Q psy1192 56 SNKSAFLCGIMKTYRQKS 73 (108)
Q Consensus 56 ~NKSAFL~gVMKtyRqr~ 73 (108)
.|=++|+|||||--=.-+
T Consensus 134 l~y~~f~cGIIrGaL~~l 151 (200)
T 1sz7_A 134 LIYSNLLCGVLRGALEMV 151 (200)
T ss_dssp CCTTTHHHHHHHHHHHTT
T ss_pred CchhhhHHHHHHHHHHhC
Confidence 378999999998765543
No 24
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=23.69 E-value=30 Score=24.77 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=14.8
Q ss_pred ccchhHHHHHHHHHHHHHh
Q psy1192 55 VSNKSAFLCGIMKTYRQKS 73 (108)
Q Consensus 55 V~NKSAFL~gVMKtyRqr~ 73 (108)
..|=++|+|||||--=+.+
T Consensus 117 ~l~y~~f~cGiIrGaL~~~ 135 (160)
T 2bjn_A 117 ASKYLAFTCGLIRGGLSNL 135 (160)
T ss_dssp TGGGTHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHC
Confidence 4567999999999766554
No 25
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=23.30 E-value=86 Score=26.02 Aligned_cols=37 Identities=32% Similarity=0.355 Sum_probs=31.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHhhccC
Q psy1192 26 DRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGM 77 (108)
Q Consensus 26 eRAidaLkef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gVMKtyRqr~r~g~ 77 (108)
|+|+-..++=.+++|..+.++|++.- ..|+++.|.|.
T Consensus 116 D~a~~la~~g~l~eAkk~a~~~~~~r---------------~~yHk~~~~G~ 152 (347)
T 3u8p_A 116 DDALKLANEGKVKEAQAAAEQLKTTR---------------NAYHQKYRGGK 152 (347)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTHHHHH---------------HHHHHHHSSSC
T ss_pred hHHHHhhhccchHHHHHHHHHhHhHH---------------HhhhhhccCCc
Confidence 68888999999999999999999742 46899999643
No 26
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=22.37 E-value=1.4e+02 Score=20.68 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHhcCCCCCcccchHHHHHHhh-------cCChHHHHHHHHHHhh
Q psy1192 2 HLENIQIIFLSHNFPGKLLHKDLDDRALDALK-------EYPSEGAIAVLNQFLE 49 (108)
Q Consensus 2 ~~~~iq~~l~~iy~sG~l~~~DLDeRAidaLk-------ef~~e~Al~vl~qF~e 49 (108)
.+.+....+..+++.|.+..+ ++.++|++ ..++..|..|.+...+
T Consensus 76 ~~~s~rd~~r~a~~~GlI~d~---~~w~~m~~~RN~tvH~Y~e~~a~~v~~~I~~ 127 (146)
T 1jog_A 76 GAYGFKDILREALRFGLIGDM---SKWVAYRDMRNITSHTYDQEKAMAVYAQIDD 127 (146)
T ss_dssp TSCCHHHHHHHHHHTTSCSCH---HHHHHHHHHHTTGGGTTSHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHcCCCCcH---HHHHHHHHHhhHhcccccHhhHHHHHHHHHH
Confidence 356677889999999999876 78888876 5667777777665544
No 27
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=22.14 E-value=61 Score=26.89 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=27.7
Q ss_pred hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192 33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI 65 (108)
Q Consensus 33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV 65 (108)
++++.++|..+++++.+-+.+-+ .-+||||++
T Consensus 15 ~~Lt~eEa~~~~~~i~~G~~sd~-QiaAfL~Al 46 (440)
T 2tpt_A 15 HALSDEEIRFFINGIRDNTISEG-QIAALAMTI 46 (440)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence 56888999999999999888888 578999997
No 28
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.93 E-value=26 Score=21.99 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=27.0
Q ss_pred hHHHHHHHHhcCCCCCcccchHHHHHHhhcCChHHHHHHHHHH
Q psy1192 5 NIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQF 47 (108)
Q Consensus 5 ~iq~~l~~iy~sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF 47 (108)
++..+++.|++.|.++.+|.|+=-- ..-+.+.|...|...
T Consensus 23 ~v~~lld~L~~~~vlt~~~~e~I~~---~~t~~~kar~Lld~l 62 (94)
T 2p1h_A 23 KTSYIMDHMISDGFLTISEEEKVRN---EPTQQQRAAMLIKMI 62 (94)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHT---SSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHc---CCChHHHHHHHHHHH
Confidence 4667899999999999998775211 134555565555544
No 29
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.89 E-value=1.2e+02 Score=18.45 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=20.1
Q ss_pred cchHHHHHHhhc--CChHHHHHHHHHHh
Q psy1192 23 DLDDRALDALKE--YPSEGAIAVLNQFL 48 (108)
Q Consensus 23 DLDeRAidaLke--f~~e~Al~vl~qF~ 48 (108)
++|+.+|+-|.+ |+.+.|..+|....
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~ 34 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNG 34 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 688888888877 67777888877654
No 30
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=21.85 E-value=62 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=27.1
Q ss_pred hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192 33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI 65 (108)
Q Consensus 33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV 65 (108)
++++.++|..+++++.+-+.+-+ .-+||||++
T Consensus 14 ~~Lt~eEa~~~~~~i~~G~~sd~-QiaAfL~Al 45 (433)
T 1brw_A 14 KALTKEEIEWIVRGYTNGDIPDY-QMSALAMAI 45 (433)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence 36788889999999998888887 578999987
No 31
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=21.77 E-value=25 Score=23.48 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCCcccchHHHHHHhhcCChHHHHHHHHHH
Q psy1192 5 NIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQF 47 (108)
Q Consensus 5 ~iq~~l~~iy~sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF 47 (108)
++..+|+.|++.|.++.+| |+ ...+ +.-+.+.|-..|...
T Consensus 28 ~V~~lLD~LL~~~VL~~ee-~~-I~~~-~~T~~~kaR~Lld~v 67 (98)
T 2nz7_A 28 NTQCLVDNLLKNDYFSAED-AE-IVCA-CPTQPDKVRKILDLV 67 (98)
T ss_dssp CCHHHHHHHHHTTSSCHHH-HH-HHHT-CCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCHHH-HH-HHcc-CCCcHHHHHHHHHHH
Confidence 6778899999999999998 43 2222 245567777777554
No 32
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=20.75 E-value=95 Score=17.95 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=32.7
Q ss_pred CCCCCcccchHHHHHHhhcCChHHHHHHHHHHhhcccccccchhHHHHHHHHHH
Q psy1192 16 PGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTY 69 (108)
Q Consensus 16 sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gVMKty 69 (108)
+|.|+.+||-.-....=..++.+.+..++.++. .|=.|.=+-.-|+..+.+.+
T Consensus 34 ~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D-~~~dg~i~~~eF~~~~~~~~ 86 (90)
T 1avs_A 34 GGDISTKELGTVMRMLGQNPTKEELDAIIEEVD-EDGSGTIDFEEFLVMMVRQM 86 (90)
T ss_dssp SSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHC-TTCCSSEEHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC-CCCCCeEeHHHHHHHHHHHh
Confidence 578888887643322223456777777777774 34445447778877665544
No 33
>3cl3_A ORF K13, KS-vflip; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Human herpesvirus 8}
Probab=20.30 E-value=1.6e+02 Score=21.42 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=33.5
Q ss_pred hHHHHHHHHhcCCCCCcccchHHHHHHhhcCChHHHHHHHHHHhhccccc
Q psy1192 5 NIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEH 54 (108)
Q Consensus 5 ~iq~~l~~iy~sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF~eS~L~h 54 (108)
+.-..+.++-+.+++++++||- -.++|+.++-..=+.-+++|..++|+|
T Consensus 134 s~ldlf~~LEk~~~l~~~nl~~-L~~iL~~i~R~DL~~~i~~y~~~~~~~ 182 (183)
T 3cl3_A 134 TFLHWVYCMENLDLLGPTDVDA-LMSMLRSLSRVDLQRQVQTLMGLHLSG 182 (183)
T ss_dssp SHHHHHHHHHTTTSCSTTCCHH-HHHHHHHTTCHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHhCCCCCchHHH-HHHHHHHcChHHHHHHHHHHHHHhccC
Confidence 4556788889999999999874 456777777455667778888766655
No 34
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=20.04 E-value=71 Score=26.88 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=28.1
Q ss_pred hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192 33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI 65 (108)
Q Consensus 33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV 65 (108)
++++.++|..+++++.+-+.+-+ .-+||||++
T Consensus 41 ~~Lt~eEa~~~~~~i~~G~~sd~-QiaAfLmAl 72 (474)
T 1uou_A 41 GRLSEADIRGFVAAVVNGSAQGA-QIGAMLMAI 72 (474)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence 47889999999999999888888 579999997
Done!