RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1192
         (108 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.17
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 5/29 (17%)

Query: 22 KDLDDRALDALKEYPSEGAIAV-LNQFLE 49
          K L       LK Y  + A A+ +   +E
Sbjct: 23 KKLQAS----LKLYADDSAPALAIKATME 47


>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
           sapiens}
          Length = 103

 Score = 25.3 bits (56), Expect = 2.7
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 78  AGVASTSAVLTLKGPD 93
            G AS  A L + G D
Sbjct: 87  KGEASDYATLDVTGGD 102


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.8 bits (53), Expect = 7.5
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 20/104 (19%)

Query: 1   IHLENIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLN-----QFLE---SNL 52
           I + +I +           LH+ + D   +  K + S+  I           +     N+
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 53  EHVSNKSAFLCGIMKTY------RQKSR-SGMAGVASTSAVLTL 89
           EH    + F       +       QK R    A  AS S + TL
Sbjct: 485 EHPERMTLF----RMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524


>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
          structural protein, muscle, antibo; 1.69A {Homo
          sapiens}
          Length = 97

 Score = 24.2 bits (53), Expect = 7.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 78 AGVASTSAVLTLKGPDE 94
           G  S+ A L +KG  E
Sbjct: 81 YGEDSSYAELFVKGVRE 97


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,580,509
Number of extensions: 82681
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 8
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)