RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1192
         (108 letters)



>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga
           maritima [TaxId: 2336]}
          Length = 121

 Score = 24.8 bits (54), Expect = 1.6
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 37  SEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPDEEK 96
              A     + +ES L     ++A    I+      S   M  V   + ++     ++  
Sbjct: 31  EHRAREAAKKAMESKLIEHPVENAS--SIVFNITAPSNIRMEEVHEAAMIIRQNSSEDAD 88

Query: 97  IKFGSGSD 104
           +KFG   D
Sbjct: 89  VKFGLIFD 96


>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 377

 Score = 24.6 bits (53), Expect = 2.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 10 FLSHNFPGKLLHKDLDDRA 28
          F +    G+ L K L+ RA
Sbjct: 44 FQASGGVGERLQKGLERRA 62


>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572
          {Streptococcus pyogenes [TaxId: 1314]}
          Length = 77

 Score = 23.7 bits (51), Expect = 3.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 6  IQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLN--QFLESNLEHVSNKSAF 61
          IQ+  L+     ++  +D D+RA DA   Y S+     L+  +FL    ++  N  AF
Sbjct: 19 IQVNQLAMATSQEVAQEDGDERAKDAFIRYESK-----LDAYEFLLGKFDNYKNGKAF 71


>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 382

 Score = 23.4 bits (50), Expect = 9.1
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 10 FLSHNFPGKLLHKDLDDRA 28
          F +    G+ L + L +R 
Sbjct: 42 FGAPGGLGETLQEKLLERQ 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 371,460
Number of extensions: 14384
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 6
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)