BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11920
(884 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 191/826 (23%), Positives = 332/826 (40%), Gaps = 98/826 (11%)
Query: 110 KPPSEPVYFRGELGQPIKVMVNYIDLSVKEGSGMYEYEVKFNPPIDSRGIRNRLINSL-- 167
KPP P + G G+ IK+ N+ ++ + + +Y YE+ P R + ++ +
Sbjct: 26 KPPPRPDF--GTSGRTIKLQANFFEMDIPK-IDIYHYELDIKPEKCPRRVNREIVEHMVQ 82
Query: 168 ---NDLLGQYK-TFDG-MNLF--LPFKLSSDTVNTTCQ-TREGSD----VQITIIFKRQR 215
+ G K FDG NL+ +P + D V EG D V I +
Sbjct: 83 HFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSL 142
Query: 216 QFYENLM---FYNILFRKI-AFLLSMVQFKDCLYDPRSKLLIPQYK---------LEVWP 262
Q + + ++ F I A + M Y P + + EVW
Sbjct: 143 QALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWF 202
Query: 263 GFVTAIDEYEGGLKLQIDTSCRVLRTS------TC--LDL--IDELKEKFGGNFMERLSQ 312
GF ++ + L ID S + C LD I+E ++ + + ++
Sbjct: 203 GFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTK 262
Query: 313 ALIG---EIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEPKSYVD-----YYREAYNIEI 364
+ G EI + YR+ + + TF + E V+ Y+++ + + +
Sbjct: 263 EIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVL 322
Query: 365 RDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMR--NDFQVMKSIASF 422
R P L E+ H + E+ + ++ D Q I +
Sbjct: 323 RYPHLPCL----------QVGQEQKHTYLPL--EVCNIVAGQRCIKKLTDNQTSTMIRAT 370
Query: 423 TRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARIL-PVEKIYMGNNF 481
R P+++ + ISK + + + N T ++ +G+ + M + R+L P +Y G N
Sbjct: 371 ARSAPDRQ-EEISKLMRSASFN--TDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNK 427
Query: 482 VAPGSQEADW---NRQVGTNPALTVVNFDQWVLIHIRRDQRNAD----NFLNCLNRNSNA 534
+ W N+Q T + V W + ++ + +F L + S
Sbjct: 428 AIATPVQGVWDMRNKQFHTGIEIKV-----WAIACFAPQRQCTEVHLKSFTEQLRKISRD 482
Query: 535 IGIRVKKPQVI---ALQEEQTLSYLTALKSMRSDTQFVVIIFNAPRTDRYQAVKKYCCCE 591
G+ ++ A + LK+ + Q VV+I +T Y VK+
Sbjct: 483 AGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPG-KTPVYAEVKRVGDTV 541
Query: 592 RPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPY-------DCAMVIGI 644
+ +Q + + + R + + L+IN KLGG + ++ +P + +G
Sbjct: 542 LGMATQCVQMKNVQR--TTPQTLSNLCLKINVKLGG-VNNILLPQGRPPVFQQPVIFLGA 598
Query: 645 DVYHEGVG-SQGQNIVGLVASTNKDFTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQA 703
DV H G + +I +V S + Y + +Q+ QEI +A ++ L +F ++
Sbjct: 599 DVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKS 658
Query: 704 NSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRI 763
P +I +RDGVS+GQ V E+ ++ + Y P IT I+VQKR
Sbjct: 659 TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEK-----DYQPGITFIVVQKRH 713
Query: 764 NTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRND 823
+T++F N P+G+ +D +T T DF+L S QGT PSHY VL +D
Sbjct: 714 HTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDD 773
Query: 824 NNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHL 869
N D LQ L+Y+LCH Y ++ +PA YAH +A+ HL
Sbjct: 774 NRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHL 819
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 191/826 (23%), Positives = 332/826 (40%), Gaps = 98/826 (11%)
Query: 110 KPPSEPVYFRGELGQPIKVMVNYIDLSVKEGSGMYEYEVKFNPPIDSRGIRNRLINSL-- 167
KPP P + G G+ IK+ N+ ++ + + +Y YE+ P R + ++ +
Sbjct: 24 KPPPRPDF--GTSGRTIKLQANFFEMDIPK-IDIYHYELDIKPEKCPRRVNREIVEHMVQ 80
Query: 168 ---NDLLGQYK-TFDG-MNLF--LPFKLSSDTVNTTCQ-TREGSD----VQITIIFKRQR 215
+ G K FDG NL+ +P + D V EG D V I +
Sbjct: 81 HFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSL 140
Query: 216 QFYENLM---FYNILFRKI-AFLLSMVQFKDCLYDPRSKLLIPQYK---------LEVWP 262
Q + + ++ F I A + M Y P + + EVW
Sbjct: 141 QALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWF 200
Query: 263 GFVTAIDEYEGGLKLQIDTSCRVLRTS------TC--LDL--IDELKEKFGGNFMERLSQ 312
GF ++ + L ID S + C LD I+E ++ + + ++
Sbjct: 201 GFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTK 260
Query: 313 ALIG---EIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEPKSYVD-----YYREAYNIEI 364
+ G EI + YR+ + + TF + E V+ Y+++ + + +
Sbjct: 261 EIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVL 320
Query: 365 RDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMR--NDFQVMKSIASF 422
R P L E+ H + E+ + ++ D Q I +
Sbjct: 321 RYPHLPCL----------QVGQEQKHTYLPL--EVCNIVAGQRCIKKLTDNQTSTMIRAT 368
Query: 423 TRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARIL-PVEKIYMGNNF 481
R P+++ + ISK + + + N T ++ +G+ + M + R+L P +Y G N
Sbjct: 369 ARSAPDRQ-EEISKLMRSADFN--TDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNK 425
Query: 482 VAPGSQEADW---NRQVGTNPALTVVNFDQWVLIHIRRDQRNAD----NFLNCLNRNSNA 534
+ W N+Q T + V W + ++ + +F L + S
Sbjct: 426 AIATPVQGVWDMRNKQFHTGIEIKV-----WAIACFAPQRQCTEVHLKSFTEQLRKISRD 480
Query: 535 IGIRVKKPQVI---ALQEEQTLSYLTALKSMRSDTQFVVIIFNAPRTDRYQAVKKYCCCE 591
G+ ++ A + LK+ + Q VV+I +T Y VK+
Sbjct: 481 AGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPG-KTPVYAEVKRVGDTV 539
Query: 592 RPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPY-------DCAMVIGI 644
+ +Q + + + R + + L+IN KLGG + ++ +P + +G
Sbjct: 540 LGMATQCVQMKNVQR--TTPQTLSNLCLKINVKLGG-VNNILLPQGRPPVFQQPVIFLGA 596
Query: 645 DVYHEGVG-SQGQNIVGLVASTNKDFTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQA 703
DV H G + +I +V S + Y + +Q+ QEI +A ++ L +F ++
Sbjct: 597 DVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKS 656
Query: 704 NSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRI 763
P +I +RDGVS+GQ V E+ ++ + Y P IT I+VQKR
Sbjct: 657 TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEK-----DYQPGITFIVVQKRH 711
Query: 764 NTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRND 823
+T++F N P+G+ +D +T T DF+L S QGT PSHY VL +D
Sbjct: 712 HTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDD 771
Query: 824 NNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHL 869
N D LQ L+Y+LCH Y ++ +PA YAH +A+ HL
Sbjct: 772 NRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHL 817
>pdb|2XFM|A Chain A, Complex Structure Of The Miwi Paz Domain Bound To
Methylated Single Stranded Rna
Length = 150
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 101/152 (66%), Gaps = 5/152 (3%)
Query: 287 RTSTCLDLIDELKEKFGGN-FMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTK 345
R+ T LD + L ++ + F E++S+ LIG IVLT+YNN+TYR+D+ID+ Q P STF K
Sbjct: 1 RSETVLDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKK 60
Query: 346 R-GEPKSYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTG 404
G S+++YYR+ YN EI D QP+L+++ KR+ G + A ++PEL +LTG
Sbjct: 61 ADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGP---AMLIPELCYLTG 117
Query: 405 LSDAMRNDFQVMKSIASFTRVDPNQKLQAISK 436
L+D MRNDF VMK +A TR+ P Q+ + + +
Sbjct: 118 LTDKMRNDFNVMKDLAVHTRLTPEQRQREVGR 149
>pdb|2L5C|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain
pdb|2L5D|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain With
Ssrna (5'- Pugaca)
Length = 134
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 5/135 (3%)
Query: 280 DTSCRVLRTSTCLDLIDELKEKFGGN-FMERLSQALIGEIVLTRYNNQTYRIDEIDFKQT 338
D S +VLR+ T LD + + + F E++S+ LIG +VLT+YNN+TYR+D+ID+ Q
Sbjct: 3 DVSHKVLRSETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQN 62
Query: 339 PMSTFTKR-GEPKSYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVP 397
P STF K G S+++YYR+ YN EI D QP+L+++ KR+ G + A ++P
Sbjct: 63 PKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGP---AMLIP 119
Query: 398 ELAFLTGLSDAMRND 412
EL +LTGL+D MRND
Sbjct: 120 ELCYLTGLTDKMRND 134
>pdb|3O6E|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
Query: 306 FMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKR-GEPKSYVDYYREAYNIEI 364
F E++S+ LIG +VLT+YNN+TYR+D+ID+ Q P STF K G S+++YYR+ YN EI
Sbjct: 20 FQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEI 79
Query: 365 RDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRND 412
D QP+L+++ KR+ G + A ++PEL +LTGL+D MRND
Sbjct: 80 TDLKQPVLVSQPKRRRGPGGTLPGP---AXLIPELCYLTGLTDKMRND 124
>pdb|3O3I|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Oh At Its 3'-End
Length = 124
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
Query: 306 FMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKR-GEPKSYVDYYREAYNIEI 364
F E++S+ LIG +VLT+YNN+TYR+D+ID+ Q P STF K G S+++YYR+ YN EI
Sbjct: 20 FQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEI 79
Query: 365 RDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRND 412
D QP+L+++ KR+ G + A ++PEL +LTGL+D MRND
Sbjct: 80 TDLKQPVLVSQPKRRRGPGGTLPGP---AMLIPELCYLTGLTDKMRND 124
>pdb|3O7V|X Chain X, Crystal Structure Of Human Hiwi1 (V361m) Paz Domain
(Residues 277-399) In Complex With 14-Mer Rna (12-Bp +
2-Nt Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 75/108 (69%), Gaps = 4/108 (3%)
Query: 306 FMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKR-GEPKSYVDYYREAYNIEI 364
F E++S+ LIG +VLT+YNN+TYR+D+ID+ Q P STF K G S+++YYR+ YN EI
Sbjct: 20 FQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEI 79
Query: 365 RDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRND 412
D QP L+++ KR+ G + A ++PEL +LTGL+D MRND
Sbjct: 80 TDLKQPXLVSQPKRRRGPGGTLPGP---AXLIPELCYLTGLTDKMRND 124
>pdb|3QIR|A Chain A, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|B Chain B, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|C Chain C, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|D Chain D, Crystal Structure Of Piwil2 Paz Domain
Length = 148
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 93/151 (61%), Gaps = 5/151 (3%)
Query: 287 RTSTCLDLIDELKEKFGGNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFT-K 345
R LD++ + ++ +F + ++ L+G IV+TRYNN+TYRID++D+ +TP +FT
Sbjct: 1 RNDCVLDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMS 60
Query: 346 RGEPKSYVDYYREAYNIEIRDKSQPMLITR-VKRKTRRGTNVEESHYIAAIVPELAFLTG 404
G+ ++++YY + Y I ++++ QP+LI R +R+ G ++ ++PEL+F+TG
Sbjct: 61 DGKEITFLEYYSKNYGITVKEEDQPLLIHRPSERQDNHGMLLKGE---ILLLPELSFMTG 117
Query: 405 LSDAMRNDFQVMKSIASFTRVDPNQKLQAIS 435
+ + M+ DF+ MK +A + P Q A+
Sbjct: 118 IPEKMKKDFRAMKDLAQQINLSPKQHHSALE 148
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 168/404 (41%), Gaps = 54/404 (13%)
Query: 507 DQWVLIHIRRDQRNAD------NFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK 560
++W + ++ + N F LNR I R +++ + + +K
Sbjct: 15 EKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEK-EFFAKVK 73
Query: 561 SMRSDTQFVVIIFNAPRTDR--YQAVKKYC---------CCERPIPSQVINSRTISREDK 609
+ S QFVV++ PR D Y VK+ CC + + +S + +
Sbjct: 74 ELMSSHQFVVVLL--PRKDVAIYNMVKRAADITFGVHTVCC--------VAEKFLSTKGQ 123
Query: 610 MKSIVMKIALQINCKLGGSLWSVQIPYDC-----AMVIGIDVYHEGVGSQGQN------I 658
+ + L++N K GG+ +++ P MV+G DV H + GQ+ I
Sbjct: 124 L-GYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSI 182
Query: 659 VGLVASTNKDFTTYYSQAVIQRRGQE-ITDSIAQPFKQALDRF---IQANSVPPKQIFIF 714
VGLV++ ++ + + GQE +T+ FK L+ + N P+ I IF
Sbjct: 183 VGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIF 242
Query: 715 RDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAG 774
RDGVS+GQ V + E+ +V + P+IT I+ KR T+ F
Sbjct: 243 RDGVSEGQFQMVIKDEL----PLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKH 298
Query: 775 ERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRND------NNVKV 828
+ G+V+D VT DFFL + QGT +HY VL ++ N
Sbjct: 299 IHFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAA 358
Query: 829 DHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRL 872
D L++L++ +C+L+ + + YA + +H + L
Sbjct: 359 DTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKEL 402
>pdb|3O7X|A Chain A, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|B Chain B, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|C Chain C, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|D Chain D, Crystal Structure Of Human Hili Paz Domain
Length = 140
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 89/138 (64%), Gaps = 5/138 (3%)
Query: 292 LDLIDELKEKFGGNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFT-KRGEPK 350
LD++ + ++ +F + ++ L+G IV+TRYNN+TYRID++D+ +TP +FT G+
Sbjct: 6 LDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEI 65
Query: 351 SYVDYYREAYNIEIRDKSQPMLITR-VKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAM 409
++++YY + Y I ++++ QP+LI R +R+ G ++ ++PEL+F+TG+ + M
Sbjct: 66 TFLEYYSKNYGITVKEEDQPLLIHRPSERQDNHGMLLKGE---ILLLPELSFMTGIPEKM 122
Query: 410 RNDFQVMKSIASFTRVDP 427
+ DF+ MK +A + P
Sbjct: 123 KKDFRAMKDLAQQINLSP 140
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 22/263 (8%)
Query: 617 IALQINCKLGGSLWSVQIPYD----------CAMVIGIDVYHEGVGSQGQNIVGLVASTN 666
+ +++N KL GS S+ I + +V+G DV H Q +I LV S +
Sbjct: 731 VVMKMNLKLLGSNHSLSIENNKLLIDKESNLPILVLGSDVTHYPEKDQ-NSIASLVGSYD 789
Query: 667 KDFTTYYSQAVIQR-RGQEITDSIAQPFKQALDRFIQANSVP-PKQIFIFRDGVSDGQLD 724
FT + ++Q G+EI ++ L + + N+ P +I FRDGVS Q
Sbjct: 790 DKFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFS 849
Query: 725 SVSRVEIDQYQQIVDTIMTTLPSCS-YAPKITAIIVQKRINTKIFQLLS-----AGER-- 776
V ++E+ ++ V L + Y P +T I KR + + GE
Sbjct: 850 QVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVA 909
Query: 777 -PNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLS 835
++ N G+V+D +T DFF+ S +GT P HY L ++N D+LQ +
Sbjct: 910 VQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEIC 969
Query: 836 YKLCHLYYNWPGTIRVPAVCQYA 858
LC+++ +++VPA YA
Sbjct: 970 NNLCYIFGRSTTSVKVPAPVYYA 992
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 123/297 (41%), Gaps = 48/297 (16%)
Query: 507 DQWVLIHIRRDQRNAD------NFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK 560
++W + ++ + N F LNR I R +++ + + +K
Sbjct: 15 EKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEK-EFFAKVK 73
Query: 561 SMRSDTQFVVIIFNAPRTDR--YQAVKKYC---------CCERPIPSQVINSRTISREDK 609
+ S QFVV++ PR D Y VK+ CC + + +S + +
Sbjct: 74 ELMSSHQFVVVLL--PRKDVAIYNMVKRAADITFGVHTVCC--------VAEKFLSTKGQ 123
Query: 610 MKSIVMKIALQINCKLGGSLWSVQIPYDC-----AMVIGIDVYHEGVGSQGQN------I 658
+ + L++N K GG+ +++ P MV+G DV H + GQ+ I
Sbjct: 124 L-GYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSI 182
Query: 659 VGLVASTNKDFTTYYSQAVIQRRGQE-ITDSIAQPFKQALDRF---IQANSVPPKQIFIF 714
VGLV++ ++ + + GQE +T+ FK L+ + N P+ I IF
Sbjct: 183 VGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIF 242
Query: 715 RDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLL 771
RDGVS+GQ V + E+ +V + P+IT I+ K + + +L
Sbjct: 243 RDGVSEGQFQMVIKDEL----PLVRAACKLVYPAGKLPRITLIVSVKGSGSAHYTVL 295
>pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data
Length = 756
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 310 LSQALIGEIVLT-RYNNQTYRIDEIDFKQTPMSTFTKRGEPKSYVDYYREAYNIEIRDKS 368
LS +L G +V T + Y + ID QT +S FT+ E +Y+ YY A+NI +R
Sbjct: 152 LSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRANESITYMRYYATAHNIHLRAAD 211
Query: 369 QPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRND-FQVMKSIASFTRVDP 427
P L+ V+ + + + P+L FL + D F ++ RV
Sbjct: 212 LP-LVAAVRLDDLKDHQIPAPGSWDDLAPKLRFLPPELCLLLPDEFDLI-------RVQA 263
Query: 428 NQKLQAISKYINNVNNN 444
Q L I+K+I ++ N
Sbjct: 264 LQFLPEIAKHICDIQNT 280
>pdb|2F8S|A Chain A, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
pdb|2F8S|B Chain B, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
pdb|2F8T|A Chain A, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
pdb|2F8T|B Chain B, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
pdb|2NUB|A Chain A, Structure Of Aquifex Aeolicus Argonuate
Length = 706
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 544 VIALQEEQTLSYLTALKSMRSDTQFVVIIFN-APRTDRYQAVKKYCCCERP-----IPSQ 597
++A E+ L + + D V++ P+ D Y++ Y +R IPSQ
Sbjct: 395 ILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQ 454
Query: 598 VINSRTISREDKMKSIVMKIALQINCKLGGSLWSV-QIPYDCAMVIGIDV 646
VI +RT+ E+ +K +++ +A Q+ K G + + +I +GID+
Sbjct: 455 VILNRTLKNEN-LKFVLLNVAEQVLAKTGNIPYKLKEIEGKVDAFVGIDI 503
>pdb|1YVU|A Chain A, Crystal Structure Of A. Aeolicus Argonaute
Length = 706
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 544 VIALQEEQTLSYLTALKSMRSDTQFVVIIFN-APRTDRYQAVKKYCCCERP-----IPSQ 597
++A E+ L + + D V++ P+ D Y++ Y +R IPSQ
Sbjct: 395 ILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKXIPSQ 454
Query: 598 VINSRTISREDKMKSIVMKIALQINCKLGGSLWSV-QIPYDCAMVIGIDV 646
VI +RT+ E+ +K +++ +A Q+ K G + + +I +GID+
Sbjct: 455 VILNRTLKNEN-LKFVLLNVAEQVLAKTGNIPYKLKEIEGKVDAFVGIDI 503
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,466,524
Number of Sequences: 62578
Number of extensions: 943273
Number of successful extensions: 1873
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 21
length of query: 884
length of database: 14,973,337
effective HSP length: 107
effective length of query: 777
effective length of database: 8,277,491
effective search space: 6431610507
effective search space used: 6431610507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)