Query psy11920
Match_columns 884
No_of_seqs 272 out of 1121
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 22:21:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1042|consensus 100.0 2E-210 4E-215 1718.3 48.7 755 118-884 87-845 (845)
2 PLN03202 protein argonaute; Pr 100.0 1E-150 3E-155 1378.2 44.0 737 114-884 34-900 (900)
3 KOG1041|consensus 100.0 7E-117 1E-121 1072.0 41.3 720 118-868 50-834 (876)
4 cd04658 Piwi_piwi-like_Euk Piw 100.0 3E-100 7E-105 881.1 22.6 443 414-867 1-448 (448)
5 cd04657 Piwi_ago-like Piwi_ago 100.0 2.2E-98 5E-103 858.4 20.5 409 450-868 2-425 (426)
6 cd02826 Piwi-like Piwi-like: P 100.0 9.7E-87 2.1E-91 755.9 18.8 379 462-866 2-392 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 1.6E-73 3.4E-78 628.0 10.9 295 568-870 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 1.9E-50 4.1E-55 461.3 19.7 283 552-867 93-402 (404)
9 cd02845 PAZ_piwi_like PAZ doma 99.9 9.4E-25 2E-29 205.3 8.3 114 289-406 2-117 (117)
10 PF02170 PAZ: PAZ domain; Int 99.8 5.2E-20 1.1E-24 178.8 2.6 116 289-414 1-122 (135)
11 cd02825 PAZ PAZ domain, named 99.7 2.6E-18 5.7E-23 161.9 5.7 105 289-403 2-115 (115)
12 cd02844 PAZ_CAF_like PAZ domai 99.7 8.1E-17 1.8E-21 154.8 5.6 94 310-404 27-133 (135)
13 cd02846 PAZ_argonaute_like PAZ 99.6 4.6E-16 9.9E-21 146.6 5.7 102 289-402 2-113 (114)
14 COG1431 Argonaute homolog, imp 99.6 7.2E-15 1.6E-19 164.2 11.0 269 569-884 409-685 (685)
15 cd02843 PAZ_dicer_like PAZ dom 99.3 1.1E-12 2.3E-17 121.9 5.5 65 311-376 38-106 (122)
16 PF08699 DUF1785: Domain of un 99.1 5.7E-11 1.2E-15 95.1 2.2 49 239-287 2-50 (52)
17 PF13032 DUF3893: Domain of un 89.7 0.31 6.7E-06 47.6 3.4 57 811-867 66-122 (138)
18 PF08459 UvrC_HhH_N: UvrC Heli 87.5 0.37 8E-06 47.9 2.4 105 638-766 11-120 (155)
19 TIGR00194 uvrC excinuclease AB 75.4 4.7 0.0001 48.7 5.9 108 639-769 382-496 (574)
20 PRK14670 uvrC excinuclease ABC 63.0 16 0.00035 44.1 6.9 109 638-769 358-471 (574)
21 PRK12306 uvrC excinuclease ABC 60.8 17 0.00036 43.5 6.4 105 638-769 366-475 (519)
22 PRK00558 uvrC excinuclease ABC 59.0 17 0.00037 44.3 6.2 98 638-761 383-485 (598)
23 PRK14671 uvrC excinuclease ABC 58.4 17 0.00036 44.5 6.0 105 638-769 415-524 (621)
24 PRK14667 uvrC excinuclease ABC 55.5 23 0.00049 42.8 6.4 106 637-769 360-470 (567)
25 PRK14668 uvrC excinuclease ABC 54.7 25 0.00053 42.7 6.5 108 637-769 374-484 (577)
26 PRK14669 uvrC excinuclease ABC 50.0 30 0.00065 42.3 6.3 106 638-769 396-506 (624)
27 PRK14666 uvrC excinuclease ABC 49.7 34 0.00075 42.0 6.7 99 638-761 472-571 (694)
28 PRK14672 uvrC excinuclease ABC 48.8 31 0.00067 42.3 6.1 107 637-769 453-563 (691)
29 COG0322 UvrC Nuclease subunit 36.9 77 0.0017 38.4 6.9 105 639-769 380-486 (581)
30 KOG2677|consensus 36.8 56 0.0012 39.1 5.4 37 26-62 64-100 (922)
31 KOG4350|consensus 32.3 44 0.00096 37.9 3.6 28 26-55 578-605 (620)
32 PF12764 Gly-rich_Ago1: Glycin 28.5 2E+02 0.0044 26.5 6.4 16 74-89 87-102 (104)
33 PRK11617 endonuclease V; Provi 24.1 1.1E+02 0.0024 32.5 4.7 120 728-867 81-215 (224)
34 smart00553 SEP Domain present 23.7 1.7E+02 0.0037 26.7 5.1 31 709-739 5-37 (93)
35 PF09373 PMBR: Pseudomurein-bi 23.6 69 0.0015 23.2 2.2 19 695-713 15-33 (33)
36 PF12238 MSA-2c: Merozoite sur 22.0 2.4E+02 0.0053 29.5 6.5 9 82-90 181-189 (205)
No 1
>KOG1042|consensus
Probab=100.00 E-value=1.8e-210 Score=1718.30 Aligned_cols=755 Identities=39% Similarity=0.726 Sum_probs=727.9
Q ss_pred ecccCCCceEEEEEeeeeeeecCCceeEEEeeeCCCCCchhhhhhHHhhHHhhhcccccccccceeeeeeeccccccccc
Q psy11920 118 FRGELGQPIKVMVNYIDLSVKEGSGMYEYEVKFNPPIDSRGIRNRLINSLNDLLGQYKTFDGMNLFLPFKLSSDTVNTTC 197 (884)
Q Consensus 118 ~~Gt~G~~v~l~tN~f~l~~~~~~~iy~Y~V~~~P~~~~~~~r~~ll~~~~~~~g~~~~fDG~~L~s~~~L~~~~~~~~~ 197 (884)
|+|++|.||+|.||||++..+|+|.||||||+|+|+++++++|.++|++|.+++|+.++|||.+||++++++++.+++++
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~~h~~lig~~~~FDG~iLfl~~k~eq~~tel~~ 166 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLYNHTDLIGKGYAFDGTILFLKEKFEQKQTELVS 166 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHHHhHhhhccceeecceeehhhHHHhhhhheeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCc--eEEEEEEehhHHHHhhhhHHHHHHHHHHHHHhhhcccccccCCCccccccccceeecCcceeeeecccCce
Q psy11920 198 QTREGSD--VQITIIFKRQRQFYENLMFYNILFRKIAFLLSMVQFKDCLYDPRSKLLIPQYKLEVWPGFVTAIDEYEGGL 275 (884)
Q Consensus 198 ~~~~g~~--i~i~~~~~~~~~~~~~iq~lNii~r~~l~~l~~~~iGR~ff~~~~~~~i~~~~leiw~Gf~~Sir~~e~~l 275 (884)
++++|+. |+|+++++++.+||+|||+||+|||+.|+.|++.+||||||+|.++++|++|++++||||.+||+++|..+
T Consensus 167 ks~~ge~i~I~ik~~~~~~~t~p~~iqv~NlI~RR~~k~L~L~qigRnyynp~~~i~ip~~km~lwPGy~tSIrq~E~~i 246 (845)
T KOG1042|consen 167 KSRDGELIKITIKLTNELPSTDPQCIQVFNLILRRSMKGLNLTQIGRNYYDPRAKIEIPEFKMSLWPGYETSIRQHENDI 246 (845)
T ss_pred ccCCCceEEEEEEEeccccCCChhHHHHHHHHHHHHHhhccHHHhhhccCCCCcccccccccceecCcchhHHHHhhhce
Confidence 9999987 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccceeeecchhhhHHHHHHHhhcCcHHHHHHHhhhheeEEEeecCceeeeeccccccCccccccccCCCcchhhh
Q psy11920 276 KLQIDTSCRVLRTSTCLDLIDELKEKFGGNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEPKSYVDY 355 (884)
Q Consensus 276 ~L~iDvs~k~~r~~tvld~~~~~~~~~~~~~~~~~~k~L~Gl~V~t~ynnktyrI~~I~~~~~p~~tF~~~dG~iSv~dY 355 (884)
+||.|++|||+|++|++|+|.++.++ +.+|++++++++.|++|+|+||||||||+||||+.+|.+||.++||+|||+||
T Consensus 247 llctei~hKvmR~ETvy~~m~~~~~~-~~~~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~dgeIs~veY 325 (845)
T KOG1042|consen 247 LLCTEISHKVMRTETVYDIMRSCQHN-TQRFQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDDGEISFVEY 325 (845)
T ss_pred eeehhhhhhHhhhhHHHHHHHHHhhC-HHHHHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecCceeeHhHH
Confidence 99999999999999999999998765 34599999999999999999999999999999999999999999989999999
Q ss_pred hhhhcceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhhHHHHhhhccccccCCchhHHHHH
Q psy11920 356 YREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQVMKSIASFTRVDPNQKLQAIS 435 (884)
Q Consensus 356 yk~~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d~~~mk~l~~~t~~~P~~R~~~i~ 435 (884)
|+++|||+|+|.+||+|+|++|.+.+.|+. + +.++|+||||++|||||+||+||++||++++||+++|++|++++.
T Consensus 326 yk~qYni~I~dl~QPlliS~~k~K~~~g~~-~---q~~~lIPELc~~TGLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr 401 (845)
T KOG1042|consen 326 YKKQYNIEITDLNQPLLISEPKDKRPKGEP-P---QLAMLIPELCFLTGLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLR 401 (845)
T ss_pred HHHhcCeEEeeCCcceEeccCcccCCCCCC-c---cceeeehhhhhccCCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999988654443 4 899999999999999999999999999999999999999999999
Q ss_pred HhhhccCCchhhhhhhhccccccccchhhhcceeeeeeeEeccCccccCCCcccccccccCCCCceEEEecccEEEEEEe
Q psy11920 436 KYINNVNNNKETSELLKGWGLTLNKSMETLNARILPVEKIYMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVLIHIR 515 (884)
Q Consensus 436 ~~~~~l~~~~~~~~~L~~~Gl~i~~~~~~v~grvLp~p~I~~g~~~~~~~~~~g~W~~~~r~~~~~~~~~l~~W~vv~~~ 515 (884)
.|+++|+.++++.+.|+.|||++++++++|+||+||+++|.++++++.+.+..|||++++|.+++++..++++|+||++.
T Consensus 402 ~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~ 481 (845)
T KOG1042|consen 402 RLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPG 481 (845)
T ss_pred HHHHHHhcChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecC
Confidence 99999999999999999999999999999999999999999999998777888999999999999999999999999999
Q ss_pred cccccchhhhhhcccCCceeeeeeeCceEEEeccchhhhHHHHhh-hcccCceEEEEEecCCCchhHHhhhhhccccCCC
Q psy11920 516 RDQRNADNFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK-SMRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPI 594 (884)
Q Consensus 516 ~~~~~~~~f~~~L~~~~~~~Gi~i~~P~~~~~~~~~~~~~~~~l~-~~~~~~~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI 594 (884)
|+..++++|+++|.+++..|||+|.+|.++++.++++++|+++|+ .++.++|||+||+|+++++.|+.|||++|++++|
T Consensus 482 r~~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~ddr~~tYvraiqq~v~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pv 561 (845)
T KOG1042|consen 482 RNNSEAQEFINMLRRVASSMGMQIREPICVEIKDDRPGTYVRAIQQVVGADIQMVVCILPSDNKTRYDSIKKYLCVDCPV 561 (845)
T ss_pred ccHHHHHHHHHHHHHhccccceecCCceEEEeCCCChHHHHHHHHHhccCCceEEEEEecCCchhhHHHHHhheeccCCC
Confidence 999999999999999999999999999999999999999999999 8889999999999999999999999999999999
Q ss_pred cccccccccccchhhhhhHHhhhhhhcccccCcceeEEeeccceeEEEeeeeeecccCCCCCceEEEEecccCCchhhhh
Q psy11920 595 PSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPYDCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTTYYS 674 (884)
Q Consensus 595 ~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p~~~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~y~s 674 (884)
|||||+.+|+.+.+.++++++|||+||||||||++|.|++|++.+||||+||+|++..++ .|++|||||+|.++|+|||
T Consensus 562 PsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~IPLk~lMiVG~Dv~hd~~~k~-rsvga~VAs~n~~~tr~fS 640 (845)
T KOG1042|consen 562 PSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVEIPLKGLMIVGFDVYHDPTLKG-RSVGAFVASMNNDFTRWFS 640 (845)
T ss_pred ccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEeeecccceEEEEEeecCccccC-ceEEEEEEeeccchhhhhh
Confidence 999999999998888999999999999999999999999999999999999999998887 9999999999999999999
Q ss_pred HHHHHhcccchhhhhhhHHHHHHHHhhhcCCCCCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhc-CCCCCCCcc
Q psy11920 675 QAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTT-LPSCSYAPK 753 (884)
Q Consensus 675 ~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~-~~~~~~~pk 753 (884)
+|.+|..++|+.+.|+.||..||++|++.|..+|+|||||||||||||++++.++||+.+.+.+.+.|.+ +. +++|+
T Consensus 641 ~v~~~~~~qel~d~L~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~--~~~~r 718 (845)
T KOG1042|consen 641 RVIEQENGQELADNLKVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSN--KEKPR 718 (845)
T ss_pred heecccCHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcC--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999555555544432 33 58999
Q ss_pred eeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEeecccccccccceeEEEeccCCCCccchhh
Q psy11920 754 ITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQR 833 (884)
Q Consensus 754 lt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~qGT~rPthY~Vl~d~~~l~~d~lq~ 833 (884)
++||||+||+|+|||. +...+.+||+||||||++||+|+||||||+||+++|||+.||||+||||+++|+||++|+
T Consensus 719 l~~iVV~KrvntR~f~----~~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQr 794 (845)
T KOG1042|consen 719 LAVIVVTKRVNTRFFL----QGSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQR 794 (845)
T ss_pred EEEEEEEeeccHHHHh----hCCccccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHH
Confidence 9999999999999999 566789999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhheeeccCCceeeeCcchhhhHHHHHhhccccCCCCchhhhhccccC
Q psy11920 834 LSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDKLFYL 884 (884)
Q Consensus 834 LTy~LC~ly~~~~~~isvPaP~~YAhklA~~vg~~i~~~p~~~L~~~lfyL 884 (884)
|||+||||||||+|+|||||||+||||||||+||+||.+|+..|+|+||||
T Consensus 795 LtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ep~~~L~n~LffL 845 (845)
T KOG1042|consen 795 LTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHREPNLQLRNKLFFL 845 (845)
T ss_pred HHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhhchhhhHhhhhccC
Confidence 999999999999999999999999999999999999999999999999998
No 2
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1.4e-150 Score=1378.22 Aligned_cols=737 Identities=23% Similarity=0.358 Sum_probs=631.0
Q ss_pred CCeeecccCCCceEEEEEeeeeeee-cCCceeEEEeeeCC----CCCchhhhhhHHhhHH-----hhhcccccccc-cce
Q psy11920 114 EPVYFRGELGQPIKVMVNYIDLSVK-EGSGMYEYEVKFNP----PIDSRGIRNRLINSLN-----DLLGQYKTFDG-MNL 182 (884)
Q Consensus 114 ~~~~~~Gt~G~~v~l~tN~f~l~~~-~~~~iy~Y~V~~~P----~~~~~~~r~~ll~~~~-----~~~g~~~~fDG-~~L 182 (884)
.+++++||.|++|.|.||||+|.+. +++.||||||+|+| ++++++++++|+.++. ++.|..++||| ++|
T Consensus 34 ~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l 113 (900)
T PLN03202 34 MARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSL 113 (900)
T ss_pred CCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCceeecCccce
Confidence 4456899999999999999999975 68999999999995 4566888888888763 34465789999 899
Q ss_pred eeeeeeccccccccc------ccc-------------------------cCCc--eEEEEEEehhHH-------------
Q psy11920 183 FLPFKLSSDTVNTTC------QTR-------------------------EGSD--VQITIIFKRQRQ------------- 216 (884)
Q Consensus 183 ~s~~~L~~~~~~~~~------~~~-------------------------~g~~--i~i~~~~~~~~~------------- 216 (884)
|++.+|+.+..++.. +.+ +++. |+|+++++++..
T Consensus 114 ~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~ 193 (900)
T PLN03202 114 FTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESEN 193 (900)
T ss_pred EECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCCCCC
Confidence 999999864333211 110 1222 899998888765
Q ss_pred HHhhhhHHHHHHHHHHHHHhhhcccccccCCCccc-cccccceeecCcceeeeecccCceeEEeeccceee-ecchhhhH
Q psy11920 217 FYENLMFYNILFRKIAFLLSMVQFKDCLYDPRSKL-LIPQYKLEVWPGFVTAIDEYEGGLKLQIDTSCRVL-RTSTCLDL 294 (884)
Q Consensus 217 ~~~~iq~lNii~r~~l~~l~~~~iGR~ff~~~~~~-~i~~~~leiw~Gf~~Sir~~e~~l~L~iDvs~k~~-r~~tvld~ 294 (884)
.+++||+||+|||+.++.+++.++||+||.+.... ...++|+|+|+||++|||+++++++||+|++|++| +++||+|+
T Consensus 194 ~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~ 273 (900)
T PLN03202 194 SQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDF 273 (900)
T ss_pred cHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcHHHH
Confidence 46899999999999999888999999999865332 12256899999999999999999999999999975 89999999
Q ss_pred HHHHHHhhc--CcHHHHHHHhhhheeEEEeecCceeeeeccccccCccccccccC---------CC-cchhhhhhhhcce
Q psy11920 295 IDELKEKFG--GNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRG---------EP-KSYVDYYREAYNI 362 (884)
Q Consensus 295 ~~~~~~~~~--~~~~~~~~k~L~Gl~V~t~ynnktyrI~~I~~~~~p~~tF~~~d---------G~-iSv~dYyk~~Yni 362 (884)
|.++.+... ....+++.++|+|++|.|.|+||+|+|+||+|+.+++.+|.+++ |. |||+|||+++||+
T Consensus 274 l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni 353 (900)
T PLN03202 274 LIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGI 353 (900)
T ss_pred HHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCc
Confidence 988754321 11234689999999999999999999999999999999998642 24 9999999999999
Q ss_pred eeccC-CCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhhHHHH-hhhccccccCCchhHHHHHHhhhc
Q psy11920 363 EIRDK-SQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQVM-KSIASFTRVDPNQKLQAISKYINN 440 (884)
Q Consensus 363 ~i~~~-~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d~~~m-k~l~~~t~~~P~~R~~~i~~~~~~ 440 (884)
+|+|+ ++|||... .. . +++|||||||.|+|++..+++....+ .+|+++++..|++|.+.|.++++.
T Consensus 354 ~l~~p~~lPlv~~g--------~~-~---~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~ 421 (900)
T PLN03202 354 ELRYSGDLPCINVG--------KP-K---RPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKS 421 (900)
T ss_pred cccCCCCCCEEEcC--------CC-C---CCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99996 89998432 11 2 57999999999998776665554444 489999999999999999999998
Q ss_pred cCCchhhhhhhhccccccccchhhhcceeeeeeeEeccCccccCCCcccccccccCCCCceEEEecccEEEEEEeccccc
Q psy11920 441 VNNNKETSELLKGWGLTLNKSMETLNARILPVEKIYMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVLIHIRRDQRN 520 (884)
Q Consensus 441 l~~~~~~~~~L~~~Gl~i~~~~~~v~grvLp~p~I~~g~~~~~~~~~~g~W~~~~r~~~~~~~~~l~~W~vv~~~~~~~~ 520 (884)
++.+ .+++|+.|||+|+.+|++|+||+||||+|.|+++... .+.+|+|+ +++.+|+.++.+++|+||++.+. ..
T Consensus 422 ~~~~--~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~-~p~~g~Wn--~~~~kf~~~~~l~~W~vv~~~~~-~~ 495 (900)
T PLN03202 422 SNYD--ADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDF-FPRNGRWN--FNNKKLVEPTKIERWAVVNFSAR-CD 495 (900)
T ss_pred hCCC--CchHHHHCCcEecCCceEEeEEEcCCceeecCCCccc-CCCCCcee--cCCCEecCCCccceEEEEEecCc-hh
Confidence 8653 4579999999999999999999999999999986543 56789998 67889999999999999977543 36
Q ss_pred chhhhhhcccCCceeeeeeeCceEEEec---------cchhhhHHHHhh-hcccCceEEEEEecCC-CchhHHhhhhhcc
Q psy11920 521 ADNFLNCLNRNSNAIGIRVKKPQVIALQ---------EEQTLSYLTALK-SMRSDTQFVVIIFNAP-RTDRYQAVKKYCC 589 (884)
Q Consensus 521 ~~~f~~~L~~~~~~~Gi~i~~P~~~~~~---------~~~~~~~~~~l~-~~~~~~~lvl~Ilp~~-~~~~Y~~IK~~~~ 589 (884)
+++|++.|.+.|+.+||.+..|...... +++.+.++++++ .....++|||||||++ +.+.|+.||++||
T Consensus 496 ~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~ 575 (900)
T PLN03202 496 IRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNL 575 (900)
T ss_pred HHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcCCCCcchHHHHHHHHh
Confidence 8999999999999999999988653211 134567777777 5566799999999985 6789999999999
Q ss_pred ccCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEEe------ecc---ceeEEEeeeeeecccCCC-CCceE
Q psy11920 590 CERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQ------IPY---DCAMVIGIDVYHEGVGSQ-GQNIV 659 (884)
Q Consensus 590 ~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~------~p~---~~tMivGiDV~H~~~~~~-~~Sv~ 659 (884)
++.|||||||...+. ..+++.||||||||||||+||.++ +|. .+|||||+||+|+++++. .||||
T Consensus 576 ~~~gV~TQcv~~~~~-----~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSia 650 (900)
T PLN03202 576 SEFGIVTQCIAPTRV-----NDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIA 650 (900)
T ss_pred hccCcccEEeCcccc-----chHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceE
Confidence 999999999965432 257899999999999999998876 343 589999999999987753 39999
Q ss_pred EEEeccc-CCchhhhhHHHHHhcccchhhhh---------hhHHHHHHHHhhhcC-CCCCceEEEeeccCCCCcccccce
Q psy11920 660 GLVASTN-KDFTTYYSQAVIQRRGQEITDSI---------AQPFKQALDRFIQAN-SVPPKQIFIFRDGVSDGQLDSVSR 728 (884)
Q Consensus 660 g~VaS~d-~~~t~y~s~~~~Q~~~~ei~~~l---------~~~~~~aL~~f~~~n-~~lP~~IIiYRDGVseGq~~~v~~ 728 (884)
|||||+| ..+++|++.+++|..++|++++| ..||.++|+.|++.+ +.+|++|||||||||||||++|++
T Consensus 651 a~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~ 730 (900)
T PLN03202 651 AVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLN 730 (900)
T ss_pred EEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHH
Confidence 9999999 67999999999999999999876 679999999999865 699999999999999999999999
Q ss_pred eehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEeeccc
Q psy11920 729 VEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVR 808 (884)
Q Consensus 729 ~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~ 808 (884)
+|+++|++||+++ ++ +|+|+||||||+||||+|||+. +..+||+||||||++||+|.+||||||||.++
T Consensus 731 ~Ev~~i~~a~~~~---~~--~~~Pkit~Ivv~Krh~tRff~~------~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~ 799 (900)
T PLN03202 731 IELDQIIEACKFL---DE--SWSPKFTVIVAQKNHHTKFFQA------GSPDNVPPGTVVDNKICHPRNNDFYMCAHAGM 799 (900)
T ss_pred HHHHHHHHHHHHh---CC--CCCCcEEEEEEeccceeeeecc------CCCCCCCCceEeccccccCCcceEEEeccccc
Confidence 9999999999998 55 7899999999999999999983 24589999999999999999999999999999
Q ss_pred ccccccceeEEEeccCCCCccchhhhhhhhheeeccCCceeeeCcchhhhHHHHHhhccccCCC----------------
Q psy11920 809 QGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRL---------------- 872 (884)
Q Consensus 809 qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~isvPaP~~YAhklA~~vg~~i~~~---------------- 872 (884)
|||+|||||+|||||+++++|+||+|||+|||+|+||+++|||||||||||+||+|+++++|.+
T Consensus 800 qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~~~~ 879 (900)
T PLN03202 800 IGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGITSAG 879 (900)
T ss_pred ccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988632
Q ss_pred ---------CchhhhhccccC
Q psy11920 873 ---------PSDVLSDKLFYL 884 (884)
Q Consensus 873 ---------p~~~L~~~lfyL 884 (884)
.|++|+|+|||.
T Consensus 880 ~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 880 AVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred ccccccccccchhhcCCeeeC
Confidence 478999999995
No 3
>KOG1041|consensus
Probab=100.00 E-value=6.6e-117 Score=1072.03 Aligned_cols=720 Identities=24% Similarity=0.373 Sum_probs=603.8
Q ss_pred ecccCCCceEEEEEeeeeeee-cCCc-eeEEEeeeCCCCCchhhhh-hHHhhH---Hh---hhcccccccc-cceeeeee
Q psy11920 118 FRGELGQPIKVMVNYIDLSVK-EGSG-MYEYEVKFNPPIDSRGIRN-RLINSL---ND---LLGQYKTFDG-MNLFLPFK 187 (884)
Q Consensus 118 ~~Gt~G~~v~l~tN~f~l~~~-~~~~-iy~Y~V~~~P~~~~~~~r~-~ll~~~---~~---~~g~~~~fDG-~~L~s~~~ 187 (884)
..|+.|+.+.|.+|||.++.+ ++.. +++|+|++.++..++...+ .++..+ .+ +.+..++||| ++||+...
T Consensus 50 ~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~~lyt~~~ 129 (876)
T KOG1041|consen 50 GGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQKTLYTKLE 129 (876)
T ss_pred CCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCceeEeccc
Confidence 467899999999999998764 4444 9999999999998877765 343322 12 2234567999 99999666
Q ss_pred ecc--ccccccc-ccccCC-c-eEEEEEEehhHH-------------HHhhhhHHHHHHHHHHHHHhhhcccccccCC--
Q psy11920 188 LSS--DTVNTTC-QTREGS-D-VQITIIFKRQRQ-------------FYENLMFYNILFRKIAFLLSMVQFKDCLYDP-- 247 (884)
Q Consensus 188 L~~--~~~~~~~-~~~~g~-~-i~i~~~~~~~~~-------------~~~~iq~lNii~r~~l~~l~~~~iGR~ff~~-- 247 (884)
++. ...++.. ...+.. . ++|+.+.++... ..+.+|++++++|.+....++..+|++||..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~ 209 (876)
T KOG1041|consen 130 LPEGVVTLDFDVISPKEWKKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDT 209 (876)
T ss_pred cccccceEEEEecCCCCCcceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCC
Confidence 663 2222211 111112 3 888887765432 2468999999999988877799999999986
Q ss_pred CccccccccceeecCcceeeeecccCceeEEeeccceee-ecchhhhHHHHHHHhhcC----cHHHHHHHhhhheeEEEe
Q psy11920 248 RSKLLIPQYKLEVWPGFVTAIDEYEGGLKLQIDTSCRVL-RTSTCLDLIDELKEKFGG----NFMERLSQALIGEIVLTR 322 (884)
Q Consensus 248 ~~~~~i~~~~leiw~Gf~~Sir~~e~~l~L~iDvs~k~~-r~~tvld~~~~~~~~~~~----~~~~~~~k~L~Gl~V~t~ 322 (884)
..+. ..++|.|+|.||++|+|+..++++||+|++++.| +..+|.+++..+.+.... ++...++++|+||.|.+.
T Consensus 210 ~~~~-~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~ 288 (876)
T KOG1041|consen 210 REPA-KLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVT 288 (876)
T ss_pred CCcc-ccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEe
Confidence 2222 2567899999999999999999999999999955 667899999888754211 122238999999999888
Q ss_pred ec--CceeeeeccccccCccccccccC--CC-cchhhhhhhhcceeeccCCCceeEEeeecccccCcCcccceehhhhhh
Q psy11920 323 YN--NQTYRIDEIDFKQTPMSTFTKRG--EP-KSYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVP 397 (884)
Q Consensus 323 yn--nktyrI~~I~~~~~p~~tF~~~d--G~-iSv~dYyk~~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lpp 397 (884)
|+ +|.|+|.++.+..+.+.+|+.++ +. +||+|||+++||++|+||++|||+++.. . +..|+|+
T Consensus 289 h~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~---------~---~~~~~Pm 356 (876)
T KOG1041|consen 289 HGKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRP---------K---RENFYPM 356 (876)
T ss_pred cccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCC---------C---CCcccch
Confidence 84 57899999999999999999877 45 9999999999999999999999977532 1 4689999
Q ss_pred hhhHhh-c-------chHHhhhhHHHHhhhccccccCCchhHHHHHHhhhccCCchhhhhhhhccccccccchhhhccee
Q psy11920 398 ELAFLT-G-------LSDAMRNDFQVMKSIASFTRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARI 469 (884)
Q Consensus 398 ELC~it-g-------Ltd~~r~d~~~mk~l~~~t~~~P~~R~~~i~~~~~~l~~~~~~~~~L~~~Gl~i~~~~~~v~grv 469 (884)
|||.+. | |++.+++ +|.+.++..|++|++.|.++++....+. .++|++|||.|.++|+.|+||+
T Consensus 357 Elc~i~~gQr~~k~kl~~~q~~------~m~k~~~~~P~~R~~~i~~~~~~~~~~~--d~~l~~fGi~i~~~~~~v~grv 428 (876)
T KOG1041|consen 357 ELCNIVPGQRITKEKLTPNQQS------AMIKASAVKPDQRQKLIKKVLKSSLKLS--NPYLKEFGIIVVSEPTQVEGRV 428 (876)
T ss_pred hheecccCceeecccCCHHHHH------HhhhhhcCCHHHHHHHHHHHHHHhcccc--chhHHhcCeEEecccccccccc
Confidence 999987 3 3444443 4677888999999999999998776553 5799999999999999999999
Q ss_pred eeeeeEeccCccccCCCcccccccccCCCCceEEEecccEEEEEEec--ccccchhhhhhcccCCceeeeeeeCceEEEe
Q psy11920 470 LPVEKIYMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVLIHIRR--DQRNADNFLNCLNRNSNAIGIRVKKPQVIAL 547 (884)
Q Consensus 470 Lp~p~I~~g~~~~~~~~~~g~W~~~~r~~~~~~~~~l~~W~vv~~~~--~~~~~~~f~~~L~~~~~~~Gi~i~~P~~~~~ 547 (884)
||||+|.|+++.....+..|.|+ +++++|+.++.+..|+|+++.. +.+. +.|++.|.+.|+..||.|..|..+..
T Consensus 429 L~~P~L~~~~~~~~~~p~~g~~~--~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~~~~~~~ 505 (876)
T KOG1041|consen 429 LPPPKLKFGGNEMPKNPTPGTWF--MRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKRPRKWAP 505 (876)
T ss_pred cCCceeeccCCCCccCCCcCccc--cccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCcccccccccCc
Confidence 99999999988322356778897 6899999999999999999864 3344 89999999999999999976442222
Q ss_pred ccchhhhHHHHhh---hcccCceEEEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccc
Q psy11920 548 QEEQTLSYLTALK---SMRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCK 624 (884)
Q Consensus 548 ~~~~~~~~~~~l~---~~~~~~~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~K 624 (884)
.+.+.+..+..++ ....++++++||++++..+.|+.+|++++...||+|||+..+++.+.. .++++||+||||+|
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~--~qtl~Nl~lKiN~K 583 (876)
T KOG1041|consen 506 TEESLEDMITEKSSMEKAAAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMS--PQTLANLILKINVK 583 (876)
T ss_pred ccchhHHHHHHHHhhhccCCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccc--hHHHHHHHHHHhhc
Confidence 1234455554444 224679999999999999999999999999999999999999987653 78999999999999
Q ss_pred cCcceeEEeec--------cceeEEEeeeeeecccCCC---CCceEEEEecccCCchhhhhHHHHHhcccchhhhhhhHH
Q psy11920 625 LGGSLWSVQIP--------YDCAMVIGIDVYHEGVGSQ---GQNIVGLVASTNKDFTTYYSQAVIQRRGQEITDSIAQPF 693 (884)
Q Consensus 625 LGG~~w~v~~p--------~~~tMivGiDV~H~~~~~~---~~Sv~g~VaS~d~~~t~y~s~~~~Q~~~~ei~~~l~~~~ 693 (884)
|||+|+.+..| ..+|||||+||+|++++.. .|||||||+|+|...++|.+.+++|.+++|+++++.+++
T Consensus 584 lGG~N~~l~~~~~~~~~~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~~~~~y~g~~~~Q~~r~e~i~~~~~~~ 663 (876)
T KOG1041|consen 584 LGGLNYVLVSPRSSRGPKLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDWHPQKFAGFVRFQKSRQEVIQDLGEMI 663 (876)
T ss_pred cCceeeEEecccccCcccCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccccchhhcceEEEecCChhhhcchHHHH
Confidence 99999988754 3569999999999998743 299999999999989999999999999999998899999
Q ss_pred HHHHHHhhhcCCCCCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhhhhcc
Q psy11920 694 KQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSA 773 (884)
Q Consensus 694 ~~aL~~f~~~n~~lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~~~~~ 773 (884)
.++|..|+++++.+|+||||||||||||||.+|+++|+.+|++||..+ .. +|.|+||||||+||||+|||+.+..
T Consensus 664 ~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~---~~--~y~P~it~Iv~qKrHhtR~F~~~~~ 738 (876)
T KOG1041|consen 664 RELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKL---QE--GYNPKITVIVAQKRHHTRLFAAELS 738 (876)
T ss_pred HHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHh---CC--CCCCceEEEEEEcccceeeecccCC
Confidence 999999999999999999999999999999999999999999999999 66 8999999999999999999997533
Q ss_pred -CCCCCCCCCCCCceeeeeecccccceEEEEeecccccccccceeEEEeccCCCCccchhhhhhhhheeeccCCceeeeC
Q psy11920 774 -GERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTIRVP 852 (884)
Q Consensus 774 -~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~isvP 852 (884)
+..+..+|+|||||||+.||+|..+||||+||.++|||+|||||+||+||+++++|+||+|||.|||+|++|+.+||||
T Consensus 739 ~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP 818 (876)
T KOG1041|consen 739 KDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCFTHQRCTKPVSLP 818 (876)
T ss_pred CCccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhhheeeecCCCcCC
Confidence 2335678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHhhccc
Q psy11920 853 AVCQYAHRIAYLTGMH 868 (884)
Q Consensus 853 aP~~YAhklA~~vg~~ 868 (884)
+|+||||.+|+|+...
T Consensus 819 ~P~YyA~~~A~Rgr~~ 834 (876)
T KOG1041|consen 819 APLYYAHEVAKRGRNN 834 (876)
T ss_pred chHHHHHHHHHHhhhh
Confidence 9999999999997544
No 4
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=3.4e-100 Score=881.11 Aligned_cols=443 Identities=46% Similarity=0.852 Sum_probs=414.1
Q ss_pred HHHhhhccccccCCchhHHHHHHhhhccCCchhhhhhhhccccccccchhhhcceeeeeeeEeccCccccCCCccccccc
Q psy11920 414 QVMKSIASFTRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARILPVEKIYMGNNFVAPGSQEADWNR 493 (884)
Q Consensus 414 ~~mk~l~~~t~~~P~~R~~~i~~~~~~l~~~~~~~~~L~~~Gl~i~~~~~~v~grvLp~p~I~~g~~~~~~~~~~g~W~~ 493 (884)
++||+|+++|+++|++|++.|.++++.++.+++.++.|++|||+|++++++|+||+|+||+|.|+++... .+.+++|+.
T Consensus 1 ~~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~-~~~~~~w~~ 79 (448)
T cd04658 1 NLMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVY-ANSNADWKR 79 (448)
T ss_pred ChHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccC-CCCCCCcch
Confidence 3799999999999999999999999999988777789999999999999999999999999999987543 456799998
Q ss_pred ccCCCCceEEEecccEEEEEEecccccchhhhhhcccCCceeeeeeeCceEEEeccchhhhHHHHhh-hcccCceEEEEE
Q psy11920 494 QVGTNPALTVVNFDQWVLIHIRRDQRNADNFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK-SMRSDTQFVVII 572 (884)
Q Consensus 494 ~~r~~~~~~~~~l~~W~vv~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~P~~~~~~~~~~~~~~~~l~-~~~~~~~lvl~I 572 (884)
.+++..|+.+.++++|+||+..++.+.++.|++.|.+.++.+||.+.+|.++.+.+++.+++++.|+ ....+++|+|||
T Consensus 80 ~~~~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~lvvvi 159 (448)
T cd04658 80 EIRNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFRSDPQLVVII 159 (448)
T ss_pred hhcCCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhcCCCcEEEEE
Confidence 8888889999999999999998888999999999999999999999999998887767888999998 556789999999
Q ss_pred ecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEEeec---cceeEEEeeeeeec
Q psy11920 573 FNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIP---YDCAMVIGIDVYHE 649 (884)
Q Consensus 573 lp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p---~~~tMivGiDV~H~ 649 (884)
+|++..+.|+.||++|+.+.|||||||..+|+.+..+..++++||++|||+||||.||.++.+ ..+|||||+||+|+
T Consensus 160 lp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~~~~~~~tmiiGidv~h~ 239 (448)
T cd04658 160 LPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIPPFILKNTMIVGIDVYHD 239 (448)
T ss_pred ECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccCCCCCCCeEEEEEeeecC
Confidence 999888899999999999999999999999997654567899999999999999999999977 68999999999999
Q ss_pred ccCCCCCceEEEEecccCCchhhhhHHHHHhcccch-hhhhhhHHHHHHHHhhhcCCCCCceEEEeeccCCCCcccccce
Q psy11920 650 GVGSQGQNIVGLVASTNKDFTTYYSQAVIQRRGQEI-TDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSR 728 (884)
Q Consensus 650 ~~~~~~~Sv~g~VaS~d~~~t~y~s~~~~Q~~~~ei-~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDGVseGq~~~v~~ 728 (884)
++... +|++|+|||+|.++++|++.+..|..++|+ +++|+++|.++|+.|++.|+.+|++|||||||||||||.+|++
T Consensus 240 ~~~~~-~Si~a~vas~~~~~~~~~~~~~~q~~~~e~~~~~l~~~~~~~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~ 318 (448)
T cd04658 240 TITKK-KSVVGFVASLNKSITKWFSKYISQVRGQEEIIDSLGKSMKKALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKE 318 (448)
T ss_pred CCCCC-CcEEEEEEEcCCCCceEeeEEEEeCCCceeeHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHH
Confidence 87655 999999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred eehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEeeccc
Q psy11920 729 VEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVR 808 (884)
Q Consensus 729 ~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~ 808 (884)
+|+++|++||.++ +. +|+|+||||+|+||||+|||+. ..+..+|||||||||++||+|.++||||+||.++
T Consensus 319 ~E~~~i~~a~~~~---~~--~~~p~it~ivv~Kr~~~Rff~~----~~~~~~N~~~GTvVd~~it~p~~~dFyL~s~~~~ 389 (448)
T cd04658 319 YEVPQIKKAIKQY---SE--NYSPKLAYIVVNKRINTRFFNQ----GGNNFSNPPPGTVVDSEITKPEWYDFFLVSQSVR 389 (448)
T ss_pred HHHHHHHHHHHHh---CC--CCCCCEEEEEEeccccceeecC----CCCCCCCCCCCcEecccccCCCcccEEEeccccC
Confidence 9999999999987 44 7899999999999999999993 3455689999999999999999999999999999
Q ss_pred ccccccceeEEEeccCCCCccchhhhhhhhheeeccCCceeeeCcchhhhHHHHHhhcc
Q psy11920 809 QGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGM 867 (884)
Q Consensus 809 qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~isvPaP~~YAhklA~~vg~ 867 (884)
|||+|||||+|||||+++++|+||+|||+|||+|+||+++||+|+||||||++|+++|+
T Consensus 390 qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~~g~ 448 (448)
T cd04658 390 QGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVGQ 448 (448)
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 5
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2.2e-98 Score=858.39 Aligned_cols=409 Identities=29% Similarity=0.465 Sum_probs=368.3
Q ss_pred hhhccccccccchhhhcceeeeeeeEeccCccccCCCcccccccccCCCCceEEEecccEEEEEEeccc------ccchh
Q psy11920 450 LLKGWGLTLNKSMETLNARILPVEKIYMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVLIHIRRDQ------RNADN 523 (884)
Q Consensus 450 ~L~~~Gl~i~~~~~~v~grvLp~p~I~~g~~~~~~~~~~g~W~~~~r~~~~~~~~~l~~W~vv~~~~~~------~~~~~ 523 (884)
+|++|||+|+++|++|+||+|+||+|.|+++.....+.+|+|+ +++.+|+.++.+++|+||++.++. +.+++
T Consensus 2 ~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~--~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~ 79 (426)
T cd04657 2 YLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWN--LRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRN 79 (426)
T ss_pred hhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCcee--ecCcccCCCcccceEEEEEecCccccchhHHHHHH
Confidence 6899999999999999999999999999965443367789997 688899999999999999987532 26899
Q ss_pred hhhhcccCCceeeeeeeCceEEEeccchhhhHHHHhh-hcccCceEEEEEecCCCchhHHhhhhhccccCCCcccccccc
Q psy11920 524 FLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK-SMRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSR 602 (884)
Q Consensus 524 f~~~L~~~~~~~Gi~i~~P~~~~~~~~~~~~~~~~l~-~~~~~~~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~ 602 (884)
|++.|.+.++.+||.+. ......+++.+.+.+.++ .....++|||||+|+++.+.|+.||++|+.+.|||||||..+
T Consensus 80 F~~~l~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~ 157 (426)
T cd04657 80 FVDQLVKTVIGAGINIT--TAIASVEGRVEELFAKLKQAKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAK 157 (426)
T ss_pred HHHHHHHHHHhcCCccc--ccccccchhHHHHHHHHHhhccCCCCEEEEEEcCCCcchHHHHHHHHhhcCCcccEEEccc
Confidence 99999999999999987 222233445667777777 445579999999999888999999999999999999999999
Q ss_pred cccchhhhhhHHhhhhhhcccccCcceeEEeec------cceeEEEeeeeeecccCC--CCCceEEEEecccCCchhhhh
Q psy11920 603 TISREDKMKSIVMKIALQINCKLGGSLWSVQIP------YDCAMVIGIDVYHEGVGS--QGQNIVGLVASTNKDFTTYYS 674 (884)
Q Consensus 603 tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p------~~~tMivGiDV~H~~~~~--~~~Sv~g~VaS~d~~~t~y~s 674 (884)
|+.+. ...+++.||+||||+||||.||.++.+ ..+|||||+||+|++++. +.|||+|||||+|.++++|++
T Consensus 158 ~~~k~-~~~~~~~NI~lKin~KlGG~n~~v~~~~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Vas~d~~~~~y~~ 236 (426)
T cd04657 158 KVTKK-GNPQYFANVALKINLKLGGINHSLEPDIRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVDWHLAQYPA 236 (426)
T ss_pred ccccc-cchHHHHHHHHHHHHhcCCEeeecccccccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEEecCCcccccce
Confidence 98762 347899999999999999999999864 578999999999998762 349999999999999999999
Q ss_pred HHHHHhcccchhhhhhhHHHHHHHHhhhcCCCCCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcce
Q psy11920 675 QAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKI 754 (884)
Q Consensus 675 ~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pkl 754 (884)
.+++|..++|++++|+++|+++|+.|++.|+.+|++|||||||||||||.+|+++|+++|++||.++ .. +|+|+|
T Consensus 237 ~~~~q~~~~e~i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a~~~~---~~--~~~pki 311 (426)
T cd04657 237 SVRLQSHRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKL---YP--GYKPKI 311 (426)
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHh---cc--CCCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 44 689999
Q ss_pred eEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEeecccccccccceeEEEeccCCCCccchhhh
Q psy11920 755 TAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRL 834 (884)
Q Consensus 755 t~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~qGT~rPthY~Vl~d~~~l~~d~lq~L 834 (884)
|||||+||||+|||+.+..+.....+||+||||||++||+|.++||||+||.++|||+|||||+||+||+++++|+||+|
T Consensus 312 t~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~vl~d~~~~~~d~lq~l 391 (426)
T cd04657 312 TFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTL 391 (426)
T ss_pred EEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceEEEEECCCCCCHHHHHHH
Confidence 99999999999999964222222378999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhheeeccCCceeeeCcchhhhHHHHHhhccc
Q psy11920 835 SYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMH 868 (884)
Q Consensus 835 Ty~LC~ly~~~~~~isvPaP~~YAhklA~~vg~~ 868 (884)
||+|||+|+||+++||+||||||||++|+|+..+
T Consensus 392 t~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~ 425 (426)
T cd04657 392 TYNLCYTYARCTRSVSIPPPAYYAHLAAARARCY 425 (426)
T ss_pred HHHHhhcccccCCCcccchHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998764
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=9.7e-87 Score=755.87 Aligned_cols=379 Identities=28% Similarity=0.480 Sum_probs=336.0
Q ss_pred hhhhcceeeeeeeEeccCccccCCCcccccccccCCCCceEEEec-ccEEEEEEecccccchhhhhhcccCCceeeeeee
Q psy11920 462 METLNARILPVEKIYMGNNFVAPGSQEADWNRQVGTNPALTVVNF-DQWVLIHIRRDQRNADNFLNCLNRNSNAIGIRVK 540 (884)
Q Consensus 462 ~~~v~grvLp~p~I~~g~~~~~~~~~~g~W~~~~r~~~~~~~~~l-~~W~vv~~~~~~~~~~~f~~~L~~~~~~~Gi~i~ 540 (884)
+++|+||+||||+|.|+++ |+ +++.+|..+..+ ++|+||+++++ ..++|++.|.+.++++||.+.
T Consensus 2 ~~~v~grvL~~p~i~~~~~----------w~--~~~~~f~~~~~~~~~W~vi~~~~~--~~~~f~~~l~~~~~~~G~~~~ 67 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK----------FL--RNIGPFEKPAKITNPVAVIAFRNE--EVDDLVKRLADACRQLGMKIK 67 (393)
T ss_pred ceEEeeEecCCCceEecCC----------cc--ccCCeeCCCCEeCCeEEEEEcccH--HHHHHHHHHHHHHHhCCCccC
Confidence 5789999999999999853 86 567889998888 99999999753 356899999999999999998
Q ss_pred C-ceEEEecc--chhhhHHHHhh-hcccCceEEEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhh
Q psy11920 541 K-PQVIALQE--EQTLSYLTALK-SMRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMK 616 (884)
Q Consensus 541 ~-P~~~~~~~--~~~~~~~~~l~-~~~~~~~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~n 616 (884)
+ |....+.. ++.+++.+.++ ..+.+++|||||+|+++++.|+.||++|+.. |||||||..+|+.+.+...++++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~~~~N 146 (393)
T cd02826 68 EIPIVSWIEDLNNSFKDLKSVFKNAIKAGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQTLDN 146 (393)
T ss_pred CCCCcceeecccccHHHHHHHHHHHhhcCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhccccccHHHHHH
Confidence 8 65543322 24567778887 5566899999999998889999999999888 999999999999774456799999
Q ss_pred hhhhcccccCcceeEEeec---cceeEEEeeeeeecccC--CCCCceEEEEecccCCchhhh-hHHHHHhcccchhhhhh
Q psy11920 617 IALQINCKLGGSLWSVQIP---YDCAMVIGIDVYHEGVG--SQGQNIVGLVASTNKDFTTYY-SQAVIQRRGQEITDSIA 690 (884)
Q Consensus 617 I~lkiN~KLGG~~w~v~~p---~~~tMivGiDV~H~~~~--~~~~Sv~g~VaS~d~~~t~y~-s~~~~Q~~~~ei~~~l~ 690 (884)
|++|||+||||.||.++.| .++|||||+||+|++++ ...+|++|||||+|.. .|+ +..+.|..++|++++|.
T Consensus 147 i~lkin~KlGG~~~~l~~~~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~~--~~~g~~~~~~~~~~~~~~~l~ 224 (393)
T cd02826 147 LLRKVNSKLGGINYILDSPVKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSNH--TFLGGFLYVQPSREVKLQDLG 224 (393)
T ss_pred HHHHHhhhhCCeeeEeccCCCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCCc--cccceEEEEecCccchHHHHH
Confidence 9999999999999999987 57899999999999874 2239999999999975 332 22345777788889999
Q ss_pred hHHHHHHHHhhhcCCC-CCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 691 QPFKQALDRFIQANSV-PPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 691 ~~~~~aL~~f~~~n~~-lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
++++++|+.|++.|+. +|++|||||||||||||+.|+++|++++++||. + .. +|+|+||||+|+||||+|||+
T Consensus 225 ~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~---~~--~~~p~it~Ivv~Krh~~Rff~ 298 (393)
T cd02826 225 EVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-I---EE--SYRPKLVIIVVQKRHNTRFFP 298 (393)
T ss_pred HHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-h---CC--CCCCCEEEEEEeccccceecc
Confidence 9999999999999999 999999999999999999999999999999998 5 44 789999999999999999999
Q ss_pred hhccCCCCCCCCCCCCceeeeeecccccceEEEEeecccccccccceeEEEeccCCCCccchhhhhhhhheeeccCCcee
Q psy11920 770 LLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTI 849 (884)
Q Consensus 770 ~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~i 849 (884)
.+ +.+...||+||||||++||+|.++||||+||.++|||+|||||+|+|||+++++|+||+|||+|||+|+||+++|
T Consensus 299 ~~---~~~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~lc~~y~~~~~~v 375 (393)
T cd02826 299 NE---KNGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYILCLTHQNVYSPI 375 (393)
T ss_pred CC---CCCCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCc
Confidence 53 223348999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCcchhhhHHHHHhhc
Q psy11920 850 RVPAVCQYAHRIAYLTG 866 (884)
Q Consensus 850 svPaP~~YAhklA~~vg 866 (884)
|+|+||||||++|+|+.
T Consensus 376 slP~p~~yA~~~a~r~r 392 (393)
T cd02826 376 SLPAPLYYAHKLAKRGR 392 (393)
T ss_pred ccChHHHHHHHHHHhhc
Confidence 99999999999999974
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=1.6e-73 Score=627.99 Aligned_cols=295 Identities=42% Similarity=0.694 Sum_probs=268.7
Q ss_pred EEEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcc-eeEEeecc----ceeEEE
Q psy11920 568 FVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGS-LWSVQIPY----DCAMVI 642 (884)
Q Consensus 568 lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~-~w~v~~p~----~~tMiv 642 (884)
++|||+|+++.+.|..||++++.+.|||||||..+++.+.....++++||++|||+||||. +|.++.|. .++|||
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~~~~~~~~~miI 80 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSPPSIDLKNTMII 80 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCSSGSSESEEEEE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccccccccCceEEE
Confidence 5889999988999999999999999999999999999876445799999999999999999 78888775 799999
Q ss_pred eeeeeecccCC-CCCceEEEEecccCCchhhhhHHHHHhcccchhhhhhhHHHHHHHHhhhcCCC-CCceEEEeeccCCC
Q psy11920 643 GIDVYHEGVGS-QGQNIVGLVASTNKDFTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSV-PPKQIFIFRDGVSD 720 (884)
Q Consensus 643 GiDV~H~~~~~-~~~Sv~g~VaS~d~~~t~y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~-lP~~IIiYRDGVse 720 (884)
|+||+|++..+ ..+|++|||+|+|.+.++|++.+.+|..++|+++.|++++.++|+.|++.|+. +|++||||||||||
T Consensus 81 Gidv~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse 160 (302)
T PF02171_consen 81 GIDVSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRFQDSGQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSE 160 (302)
T ss_dssp EEEEEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--G
T ss_pred EEEEEecCcccCCcceeeEEEEeccCccccccceeEEeccchhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCH
Confidence 99999998876 23999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred CcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeecccccceE
Q psy11920 721 GQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDF 800 (884)
Q Consensus 721 Gq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dF 800 (884)
|||.+|.++|+++|++||+++ .. +|+|+|+||+|+|||++|||+.+ ..+...||+||||||+.+|+|..+||
T Consensus 161 ~~~~~v~~~Ei~~i~~a~~~~---~~--~~~p~~~~i~v~K~~~~R~f~~~---~~~~~~N~~~Gtvvd~~i~~~~~~~f 232 (302)
T PF02171_consen 161 GQFKKVLEEEIEAIKEAIKEL---GE--DYNPKITYIVVQKRHNTRFFPQN---GRDGLQNPPPGTVVDTGITSPNYFEF 232 (302)
T ss_dssp GGHHHHHHHHHHHHHHHHHHH---TH--TTCTEEEEEEEESSSS--EEESS---SEETTTEECTTEEESSEEEECSBEEE
T ss_pred HhhcccHHHHHHHHHHHHhhc---cc--CCCCcEEEEEeeccccceEeecc---cccccCCCCCCeeeccceeeecceee
Confidence 999999999999999999998 54 78999999999999999999953 22357899999999999999999999
Q ss_pred EEEeecccccccccceeEEEeccCCCCccchhhhhhhhheeeccCCceeeeCcchhhhHHHHHhhccccC
Q psy11920 801 FLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQ 870 (884)
Q Consensus 801 yLvSq~~~qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~isvPaP~~YAhklA~~vg~~i~ 870 (884)
||+||.++|||++||||+|||||++++.|+||+|||+|||+|+||++++|+||||||||++|+++++.+|
T Consensus 233 ~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~~ 302 (302)
T PF02171_consen 233 YLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRNNLK 302 (302)
T ss_dssp EEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC-
T ss_pred eeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.9e-50 Score=461.25 Aligned_cols=283 Identities=19% Similarity=0.299 Sum_probs=234.2
Q ss_pred hhhHHHHhh-hc---ccCceEEEEEecCCC------chhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhc
Q psy11920 552 TLSYLTALK-SM---RSDTQFVVIIFNAPR------TDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQI 621 (884)
Q Consensus 552 ~~~~~~~l~-~~---~~~~~lvl~Ilp~~~------~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lki 621 (884)
.+.+..+++ .. ..+++++||++|++. .+.|+.||++| ++.|||||||..+|+.+.++..+++.||++||
T Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i 171 (404)
T cd04659 93 AEAIIEAVDLALSESSQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALAL 171 (404)
T ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHH
Confidence 455566665 22 247899999999875 78999999985 78999999999999986545689999999999
Q ss_pred ccccCcceeEEeec-cceeEEEeeeeeecccCCCCCceEEEEecccCCc-hhhhhHHHHHhccc-ch----hhhhhhHHH
Q psy11920 622 NCKLGGSLWSVQIP-YDCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDF-TTYYSQAVIQRRGQ-EI----TDSIAQPFK 694 (884)
Q Consensus 622 N~KLGG~~w~v~~p-~~~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~-t~y~s~~~~Q~~~~-ei----~~~l~~~~~ 694 (884)
|+|+||+||.++.+ ..++||||+||+|+..++ .+++|+++..|.+. ...+. +...+ ++ .+.+.+++.
T Consensus 172 ~aKlGG~pW~l~~~~~~~~~iIGidv~~~~~~~--~~~~~~a~vf~~~g~g~~~~----~~~~~~~~~~~~~~~~~~~l~ 245 (404)
T cd04659 172 YAKLGGIPWKLDADSDPADLYIGIGFARSRDGE--VRVTGCAQVFDSDGLGLILR----GAPIEEPTEDRSPADLKDLLK 245 (404)
T ss_pred HHhcCCCceEcccCCCCCeEEEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEe----cCccCCcccccCHHHHHHHHH
Confidence 99999999999987 889999999999997652 33444444444432 11111 11111 12 368999999
Q ss_pred HHHHHhhhcCCC-CCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhhhhcc
Q psy11920 695 QALDRFIQANSV-PPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSA 773 (884)
Q Consensus 695 ~aL~~f~~~n~~-lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~~~~~ 773 (884)
++|+.|++.++. +|+||||||||+ +.++|+++|++||.++ + ++++||+|+|+|++|||..+
T Consensus 246 ~~l~~y~~~~~~~~P~rIiihrdg~-------~~~~E~~~i~~a~~~~-------~--~~i~~I~V~k~~~~R~f~~~-- 307 (404)
T cd04659 246 RVLEGYRESHRGRDPKRLVLHKDGR-------FTDEEIEGLKEALEEL-------G--IKVDLVEVIKSGPHRLFRFG-- 307 (404)
T ss_pred HHHHHHHHHcCCCCCeEEEEECCCC-------CCHHHHHHHHHHHHhh-------C--ceEEEEEEEecCCcceEEec--
Confidence 999999999988 999999999999 4678999999999987 3 89999999999999999843
Q ss_pred CCCCCCCCCCCCceeeeeecccccceEEEEeeccc--------ccccccceeEEEeccCCCCccchhhhhhhhheeeccC
Q psy11920 774 GERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVR--------QGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNW 845 (884)
Q Consensus 774 ~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~--------qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~ 845 (884)
.. ....||++|||||.. .+||||++|... +||++|+| |++|+...++|+|+++||+||||||||
T Consensus 308 ~~-~~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~ 379 (404)
T cd04659 308 TY-PNGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLNWNS 379 (404)
T ss_pred CC-CCCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCcCC
Confidence 11 112799999999953 499999999885 99999999 788988899999999999999999999
Q ss_pred Cc-eeeeCcchhhhHHHHHhhcc
Q psy11920 846 PG-TIRVPAVCQYAHRIAYLTGM 867 (884)
Q Consensus 846 ~~-~isvPaP~~YAhklA~~vg~ 867 (884)
++ ++++|+||||||++|++++.
T Consensus 380 ~~~~~~lP~ti~YA~~~a~~~~~ 402 (404)
T cd04659 380 FQFYSRLPVTIHYADRVAKLLKR 402 (404)
T ss_pred CCCCCCcceEEeHHHHHHHHHhc
Confidence 98 99999999999999999874
No 9
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.91 E-value=9.4e-25 Score=205.31 Aligned_cols=114 Identities=48% Similarity=0.809 Sum_probs=100.7
Q ss_pred chhhhHHHHHHHhhc-CcHHHHHHHhhhheeEEEeecCceeeeeccccccCccccccccCCC-cchhhhhhhhcceeecc
Q psy11920 289 STCLDLIDELKEKFG-GNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEP-KSYVDYYREAYNIEIRD 366 (884)
Q Consensus 289 ~tvld~~~~~~~~~~-~~~~~~~~k~L~Gl~V~t~ynnktyrI~~I~~~~~p~~tF~~~dG~-iSv~dYyk~~Yni~i~~ 366 (884)
.||+|+|.++++... .++++++.++|+|++|+|.||||+|+|++|+|+.+|.++|...+|. +||+|||+++||++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~Yy~~kY~i~I~~ 81 (117)
T cd02845 2 TTVLDRMHKLYRQETDERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEITD 81 (117)
T ss_pred eeHHHHHHHHHHhcccHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCCCeeeHHHHHHHHcCCcccc
Confidence 589999999988754 3689999999999999999999999999999999999999987776 99999999999999999
Q ss_pred CCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcch
Q psy11920 367 KSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLS 406 (884)
Q Consensus 367 ~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLt 406 (884)
++||||+++.+++... +... +.+|||||||.+||||
T Consensus 82 ~~qPLL~~~~k~~~~~-~~~~---~~iyL~pElC~ltglt 117 (117)
T cd02845 82 LNQPLLVSRPKRRDPR-GGEK---EPIYLIPELCFLTGLT 117 (117)
T ss_pred CCCCcEEeeccccccC-CCCC---cEEEEchHHhhhcCCC
Confidence 9999999988765322 2223 7899999999999986
No 10
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.78 E-value=5.2e-20 Score=178.75 Aligned_cols=116 Identities=31% Similarity=0.518 Sum_probs=92.5
Q ss_pred chhhhHHHHHHHhh---cCcHHHHHHHhhhheeEEEeecC--ceeeeeccccccCccccccccCCC-cchhhhhhhhcce
Q psy11920 289 STCLDLIDELKEKF---GGNFMERLSQALIGEIVLTRYNN--QTYRIDEIDFKQTPMSTFTKRGEP-KSYVDYYREAYNI 362 (884)
Q Consensus 289 ~tvld~~~~~~~~~---~~~~~~~~~k~L~Gl~V~t~ynn--ktyrI~~I~~~~~p~~tF~~~dG~-iSv~dYyk~~Yni 362 (884)
++|+|+|.++.+.. ...+.+.+.+.|+|+.|.|.|++ ++|+|.+|+++.++.++|+.++|. +||+|||+++||+
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g~~itv~eYf~~~Y~i 80 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDGKEITVAEYFKEKYNI 80 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTSEEEEHHHHHHHTCT-
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCCceEEhHHHHHhhhhc
Confidence 47999999987552 22355568999999999999998 999999999999999999998777 9999999999999
Q ss_pred eeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhhHH
Q psy11920 363 EIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQ 414 (884)
Q Consensus 363 ~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d~~ 414 (884)
+|++|+||||.++.+.+ . +.+|||||||.+++.+...+++..
T Consensus 81 ~L~~p~~Pll~~~~~~~-------~---~~~~lP~Elc~i~~~q~~~~~~~~ 122 (135)
T PF02170_consen 81 RLKYPDLPLLNVKSKKK-------K---QPIYLPPELCFIVPGQRYKKKLFT 122 (135)
T ss_dssp --SSTTSEEEEECSTTT-------T---TCEEEECCGEEEETTTBB-SS--H
T ss_pred ccccCCCCeEEeccCCC-------C---ceEEEChhHhcccCCcHHHHhccH
Confidence 99999999997764321 1 379999999999987766555544
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.73 E-value=2.6e-18 Score=161.94 Aligned_cols=105 Identities=25% Similarity=0.425 Sum_probs=88.5
Q ss_pred chhhhHHHHHHHhh------cCcHHHHHHHhhhheeEEEeec--CceeeeeccccccCccccccccCCC-cchhhhhhhh
Q psy11920 289 STCLDLIDELKEKF------GGNFMERLSQALIGEIVLTRYN--NQTYRIDEIDFKQTPMSTFTKRGEP-KSYVDYYREA 359 (884)
Q Consensus 289 ~tvld~~~~~~~~~------~~~~~~~~~k~L~Gl~V~t~yn--nktyrI~~I~~~~~p~~tF~~~dG~-iSv~dYyk~~ 359 (884)
++|+|+|.++.+.. ....++++.++|+|+.|.|.|+ +|+|+|++|+|..++.. |...+|. +||+|||+++
T Consensus 2 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~dYf~~k 80 (115)
T cd02825 2 DPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDGKEITFADYFKER 80 (115)
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCCCEEEHHHHHHHH
Confidence 57899998887541 1235678999999999999998 89999999999999888 8777787 9999999999
Q ss_pred cceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhh
Q psy11920 360 YNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLT 403 (884)
Q Consensus 360 Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~it 403 (884)
||++|+||+||||.+..++++ . +.+|||||||.++
T Consensus 81 Y~~~l~~p~~Pll~~~~~~~~------~---~~~~lp~Elc~i~ 115 (115)
T cd02825 81 YNLTLTDLNQPLLIVKFSSKK------S---YSILLPPELCVIT 115 (115)
T ss_pred cCCcccCCCCCEEEecCcccC------C---CceEEchheEEeC
Confidence 999999999999988765331 1 5789999999875
No 12
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.65 E-value=8.1e-17 Score=154.81 Aligned_cols=94 Identities=24% Similarity=0.429 Sum_probs=74.4
Q ss_pred HHHhhhheeEEEeecCceeeeeccccccCccccccccCC-C-cchhhhhhhhcceeeccCCCceeEEeeeccc-c-----
Q psy11920 310 LSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGE-P-KSYVDYYREAYNIEIRDKSQPMLITRVKRKT-R----- 381 (884)
Q Consensus 310 ~~k~L~Gl~V~t~ynnktyrI~~I~~~~~p~~tF~~~dG-~-iSv~dYyk~~Yni~i~~~~qPllv~~~k~~~-~----- 381 (884)
+.++|+|++|+|.||+|+|+|++|+ +.+|.++|..++| . +||+|||+++||++|++++||||+++.-... |
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL~~~ 105 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLLHNR 105 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceecccc
Confidence 5678999999999999999999999 9999999988776 5 9999999999999999999999998732110 0
Q ss_pred ---cCc--CcccceehhhhhhhhhHhhc
Q psy11920 382 ---RGT--NVEESHYIAAIVPELAFLTG 404 (884)
Q Consensus 382 ---~~~--~~~~~~~~~~lppELC~itg 404 (884)
.+. ...-....++||||||.+..
T Consensus 106 ~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 106 FEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred cccccccccccccceEEEeChHHhcccc
Confidence 000 00000136899999998763
No 13
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.61 E-value=4.6e-16 Score=146.63 Aligned_cols=102 Identities=24% Similarity=0.308 Sum_probs=86.5
Q ss_pred chhhhHHHHHHHhhc-----CcHHHHHHHhhhheeEEEeec---CceeeeeccccccCccccccccCC-C-cchhhhhhh
Q psy11920 289 STCLDLIDELKEKFG-----GNFMERLSQALIGEIVLTRYN---NQTYRIDEIDFKQTPMSTFTKRGE-P-KSYVDYYRE 358 (884)
Q Consensus 289 ~tvld~~~~~~~~~~-----~~~~~~~~k~L~Gl~V~t~yn---nktyrI~~I~~~~~p~~tF~~~dG-~-iSv~dYyk~ 358 (884)
++|+|++.++.+... .....++.+.|+|+.|.+.|+ +|+|+|.+|+++.++..+|..++| . |||+|||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~ 81 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKE 81 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHH
Confidence 578899888875521 245567999999999999997 799999999999998999998776 4 999999999
Q ss_pred hcceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHh
Q psy11920 359 AYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFL 402 (884)
Q Consensus 359 ~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~i 402 (884)
+||++|++|++|||++..+ . +.+|+|||||.+
T Consensus 82 ~y~~~l~~p~lP~v~~g~~---------~---~~~~~P~Elc~i 113 (114)
T cd02846 82 KYNIRLKYPNLPCLQVGRK---------G---KPNYLPMELCNI 113 (114)
T ss_pred HcCCcccCCCCCEEEeCCC---------C---CCcEecceeEEe
Confidence 9999999999999976432 1 578999999976
No 14
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=7.2e-15 Score=164.18 Aligned_cols=269 Identities=19% Similarity=0.221 Sum_probs=173.9
Q ss_pred EEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEEeec-cceeEEEeeeee
Q psy11920 569 VVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIP-YDCAMVIGIDVY 647 (884)
Q Consensus 569 vl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p-~~~tMivGiDV~ 647 (884)
+...-+.++...|+.+|+ .+.-||||+|.-.+..+ ....+++|+|.|+-||.+|+++.+... ...+-|||+||+
T Consensus 409 ~~k~e~ykdd~~YailKr---ld~~ipsqvil~~n~rk--~~Kg~~tnla~~~~~ktlgqpY~~r~~~gpvDaivGlDvs 483 (685)
T COG1431 409 LKKQEMYKDDVKYAILKR---LDETIPSQVILDPNNRK--PYKGTKTNLASKRYLKTLGQPYLKRNGLGPVDAIVGLDVS 483 (685)
T ss_pred hccccccccchHHHHHHh---hcccCcceeeeccccCC--cchhhhhHHHHHHHHHhcCCceeeeccCCCccceeeeeee
Confidence 333444566678999998 46779999999988774 357789999999999999999998643 345699999999
Q ss_pred ecccCCCCCceEEEEeccc--CCchhhhhHHHHHhcccchhhhhhhHHHHHHHHhhhcCCCCCceEEEeeccCCCCcccc
Q psy11920 648 HEGVGSQGQNIVGLVASTN--KDFTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDS 725 (884)
Q Consensus 648 H~~~~~~~~Sv~g~VaS~d--~~~t~y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDGVseGq~~~ 725 (884)
.-..+. ..+-|+..-.| ..+-+|+-.... .-|+ ......+-+...++. --..-.+|++.|||-
T Consensus 484 r~~~gn--~tV~gct~~f~seg~l~eyy~t~tp-a~GE-rl~~~g~yle~~~~~----gfe~~n~iV~lRDG~------- 548 (685)
T COG1431 484 RVSEGN--WTVEGCTSCFVSEGGLEEYYHTVTP-ALGE-RLETSGRYLEKMNWR----GFESRNLIVTLRDGK------- 548 (685)
T ss_pred EEeeCC--eEEeeeeEEEeccCceEEeeecccC-Cccc-hhhhHHHHHHHHHhh----hhhccCeeEEEecCc-------
Confidence 987443 44555433334 334455432211 1121 111111111111111 113446799999996
Q ss_pred cceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEE--
Q psy11920 726 VSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLV-- 803 (884)
Q Consensus 726 v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLv-- 803 (884)
+...|++++++.=.++ ....+++.+. +.|.+||+.. . ... |-.+..++..+. +|
T Consensus 549 l~~~E~aavkeyg~el---------gsn~ev~~i~-knNp~vf~~e---~--~i~----g~f~~~~~s~~h-----~~~~ 604 (685)
T COG1431 549 LVAGEIAAVKEYGGEL---------GSNPEVNRIL-KNNPWVFAIE---G--EIW----GAFVRLDGSTVH-----LCCS 604 (685)
T ss_pred cchHHHHHHHHHhhhc---------CCChhhheec-ccCCeEEEec---c--eee----eEEEecCCcccc-----cccC
Confidence 5556777766654443 2344555554 4577799832 1 111 333332222111 11
Q ss_pred -eecccccccccceeEEEeccCCCCccchhhhhhhhheeeccCCce--eeeCcchhhhHHHHHhhccccCCCCchhhhhc
Q psy11920 804 -SQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGT--IRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDK 880 (884)
Q Consensus 804 -Sq~~~qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~--isvPaP~~YAhklA~~vg~~i~~~p~~~L~~~ 880 (884)
+..+..||.+|... ...-+.-.-++..|.|.|+-|.|..+.. +++|||++||||+.++.+....-+|-+.-.+.
T Consensus 605 ~ynpv~~gT~~pi~~---r~~~g~l~~e~i~lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~~~~I~p~~~~~~~ 681 (685)
T COG1431 605 PYNPVRRGTPRPIAL---RRRDGKLDGELIGLVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARYGVSIGPGDPVSER 681 (685)
T ss_pred CCCceecCCCccccc---ccccCccchhhHHHHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhccCCcCCCCccCCc
Confidence 13467899999863 3333344455555999999999888777 99999999999999999988888999999999
Q ss_pred cccC
Q psy11920 881 LFYL 884 (884)
Q Consensus 881 lfyL 884 (884)
|||+
T Consensus 682 ~y~v 685 (685)
T COG1431 682 PYPV 685 (685)
T ss_pred ccCC
Confidence 9986
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.34 E-value=1.1e-12 Score=121.89 Aligned_cols=65 Identities=25% Similarity=0.521 Sum_probs=58.9
Q ss_pred HHhhhheeEEEeecC----ceeeeeccccccCccccccccCCCcchhhhhhhhcceeeccCCCceeEEee
Q psy11920 311 SQALIGEIVLTRYNN----QTYRIDEIDFKQTPMSTFTKRGEPKSYVDYYREAYNIEIRDKSQPMLITRV 376 (884)
Q Consensus 311 ~k~L~Gl~V~t~ynn----ktyrI~~I~~~~~p~~tF~~~dG~iSv~dYyk~~Yni~i~~~~qPllv~~~ 376 (884)
.+.+.|.+|+|.||| |+|+|++|+|+.+|.++|+..+ .+||+|||+++|||.|++++||||.++.
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGPE-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCCC-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 467899999999999 8999999999999999997543 5999999999999999999999996653
No 16
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.06 E-value=5.7e-11 Score=95.08 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=38.9
Q ss_pred cccccccCCCccccccccceeecCcceeeeecccCceeEEeeccceeee
Q psy11920 239 QFKDCLYDPRSKLLIPQYKLEVWPGFVTAIDEYEGGLKLQIDTSCRVLR 287 (884)
Q Consensus 239 ~iGR~ff~~~~~~~i~~~~leiw~Gf~~Sir~~e~~l~L~iDvs~k~~r 287 (884)
.+||+||.++......++|+|+|+||++|||+..++|+||+|+++++|.
T Consensus 2 ~vgrsFF~~~~~~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~ 50 (52)
T PF08699_consen 2 AVGRSFFPPSGGPVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFY 50 (52)
T ss_dssp EETTEEEE------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC
T ss_pred ccccccCCCCCCCccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEE
Confidence 5899999987644233569999999999999999999999999999774
No 17
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=89.71 E-value=0.31 Score=47.58 Aligned_cols=57 Identities=12% Similarity=-0.014 Sum_probs=47.5
Q ss_pred ccccceeEEEeccCCCCccchhhhhhhhheeeccCCceeeeCcchhhhHHHHHhhcc
Q psy11920 811 TVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGM 867 (884)
Q Consensus 811 T~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~isvPaP~~YAhklA~~vg~ 867 (884)
....+=.+|+.=...-.++.+..||+.||+++.-+...+++|.|+|+|.++...+-.
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQAKEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHHHHHccc
Confidence 445556677766556788999999999999999999999999999999998877654
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=87.49 E-value=0.37 Score=47.89 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=48.6
Q ss_pred eeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhh----cCCCCCceEE
Q psy11920 638 CAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQ----ANSVPPKQIF 712 (884)
Q Consensus 638 ~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~----~n~~lP~~II 712 (884)
+.-|-++|+||-... -.|+++|.-.|+...+ .|-++.+.. .+-.++.. +|.+.|..+++ ....+|+-|+
T Consensus 11 P~rIE~fDiSh~~G~---~~Vgs~Vvf~~G~~~k~~YR~f~i~~--~~~~dDy~-~M~Evl~RR~~~~~~~~~~lPDLil 84 (155)
T PF08459_consen 11 PRRIECFDISHIQGS---DTVGSMVVFENGKPDKSEYRRFNIKT--VDGGDDYA-AMREVLTRRFKRLKEEKEPLPDLIL 84 (155)
T ss_dssp -SEEEEEEEEECTTT---CEEEEEEEEETTEE-GGG-EEEEEE----STT-HHH-HHHHHHHHHHCCCHHHT----SEEE
T ss_pred CCEEEEEECcccCCc---ccEEEEEEEECCccChhhCceEecCC--CCCCcHHH-HHHHHHHHHHhcccccCCCCCCEEE
Confidence 456789999997433 5688888877754432 222222321 11124443 34444444443 3457999999
Q ss_pred EeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchh
Q psy11920 713 IFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTK 766 (884)
Q Consensus 713 iYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~R 766 (884)
| || |.|| +.+.+++++++ +...++.=++=.+.|.++
T Consensus 85 I--DG-G~gQ--------l~aa~~~l~~l-------gl~i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 85 I--DG-GKGQ--------LNAAKEVLKEL-------GLNIPVIGLAKNDEHKTG 120 (155)
T ss_dssp E--SS-SHHH--------HHHHHHHHHCT-------T----EEEEESSSSE---
T ss_pred E--cC-CHHH--------HHHHHHHHHHc-------CCCeEEEEEEeccccccc
Confidence 9 76 3455 34455666665 444343333333445555
No 19
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=75.39 E-value=4.7 Score=48.67 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=62.3
Q ss_pred eEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhh---hHHHHHHHHhhhcCC-CCCceEEE
Q psy11920 639 AMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIA---QPFKQALDRFIQANS-VPPKQIFI 713 (884)
Q Consensus 639 tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~---~~~~~aL~~f~~~n~-~lP~~IIi 713 (884)
.-|-++|+||-... -.|+++|.-.|+.+.+ .|-.+.+... +-.|+.. +.+...+..+.+.+. .+|+-|||
T Consensus 382 ~rIE~fDiSh~~G~---~~V~smVvf~~G~~~k~~YR~f~i~~~--~~~dDya~m~Evl~RR~~r~~~~~~~~~PDLili 456 (574)
T TIGR00194 382 KRIEIFDISHIDGS---QTVGSMVVFEDGKPLKASYRRYNINSI--TGGDDYAAMREVLRRRYSSIQKKNNLPLPDLILI 456 (574)
T ss_pred CEEEEEECCccCCC---cceEEEEEEeCCccChhhCCeeecCCC--CCCCHHHHHHHHHHHHHhhhccccCCCCCCEEEE
Confidence 66789999997543 5688888888865543 2333333221 1124443 333333333322111 58998888
Q ss_pred eeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeee--ecchhhhh
Q psy11920 714 FRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQK--RINTKIFQ 769 (884)
Q Consensus 714 YRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~K--rh~~Rff~ 769 (884)
|| |-||+ .+..++++++ +....+.+|-..| ||.+++|.
T Consensus 457 --DG-GkgQl--------~aa~~~l~~l-------g~~~~i~viglaK~~~~~~~i~~ 496 (574)
T TIGR00194 457 --DG-GKGQL--------NAALEVLKSL-------GVVNKPIVIGLAKAKRHETDIFL 496 (574)
T ss_pred --eC-CHHHH--------HHHHHHHHHc-------CCCCCCcEEEEEecCCCceEEEe
Confidence 77 45664 3455667666 3322366776666 67677776
No 20
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=63.02 E-value=16 Score=44.10 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=62.2
Q ss_pred eeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhhc--C--CCCCceEE
Q psy11920 638 CAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQA--N--SVPPKQIF 712 (884)
Q Consensus 638 ~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~--n--~~lP~~II 712 (884)
+.-|-++|+||-... -.|+++|.-.|+.+.+ .|-.+.+........|+.. +|.+.|...++. . +.+|+-||
T Consensus 358 p~rIE~fDiSh~~G~---~~V~smVvf~~G~~~k~~YRkf~ik~~~~~~~DD~a-~M~Evl~RR~~r~~~~~~~~PDLil 433 (574)
T PRK14670 358 PKTIEGFDIAHLNGQ---KTVASLVTFKMGKPFKDGYRVYKINSLLKGEIDDFK-AIKEVISRRYSKLINEQLELPNLIL 433 (574)
T ss_pred CCeEEEEECCccCCC---CceEEEEEEECCccChhhCCeeeccCCCCCCCCHHH-HHHHHHHHHHhhcccccCCCCCEEE
Confidence 457889999997543 5688888888865543 3333444321001024443 334444433322 1 25899888
Q ss_pred EeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 713 IFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 713 iYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
| || |-|| |.+..+++.++ +...++.+|-..|+- .++|.
T Consensus 434 I--DG-GkgQ--------l~aa~~vl~~l-------g~~~~i~v~gLaK~~-e~i~~ 471 (574)
T PRK14670 434 I--DG-GKGQ--------LNAAYSILKGL-------KIENKVKVCALAKKE-ETIFL 471 (574)
T ss_pred E--eC-CHHH--------HHHHHHHHHHc-------CCCCCceEEEEecCC-eEEEe
Confidence 8 77 4566 34556677666 433236777777755 33554
No 21
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=60.79 E-value=17 Score=43.46 Aligned_cols=105 Identities=25% Similarity=0.317 Sum_probs=60.3
Q ss_pred eeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHH-hhhc---CCCCCceEE
Q psy11920 638 CAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDR-FIQA---NSVPPKQIF 712 (884)
Q Consensus 638 ~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~-f~~~---n~~lP~~II 712 (884)
+.-|-|+|+||-... -.|+++|.-.|+...+ .|-++.+... +-.|+.. +|.+.|.. |.+. ++.+|+-||
T Consensus 366 p~rIE~fDiSh~~G~---~~V~smVvf~~G~p~k~~YR~f~Ik~~--~~~dDy~-~m~Evl~RR~~r~~~~~~~~PDLil 439 (519)
T PRK12306 366 PNVIECFDISHLSGT---STVGSMVQFRNGKPDKKNYRRFKIKTV--EGIDDFA-SIAEVVRRRYSRLLEENSELPDLIV 439 (519)
T ss_pred CCeEEEEECCccCCC---CceEEEEEEeCCccChhhcCeeecCCC--CCCCHHH-HHHHHHHHHHhhcccccCCCCCEEE
Confidence 345779999997543 5688888888865543 3334444321 1124443 23333333 3221 125899888
Q ss_pred EeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 713 IFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 713 iYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
| || |-||+ .+..++++++ +. .+.+|-..|+. .++|.
T Consensus 440 I--DG-GkgQl--------~aa~~~l~el-------g~--~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 440 I--DG-GKGQL--------SSAFKELRKL-------GL--KIPLISIAKRE-EEIYV 475 (519)
T ss_pred E--eC-CHHHH--------HHHHHHHHHc-------CC--CCcEEEEEcCc-eEEEe
Confidence 8 77 45663 3455677666 43 46777777865 44554
No 22
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=59.04 E-value=17 Score=44.26 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=56.4
Q ss_pred eeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhhc----CCCCCceEE
Q psy11920 638 CAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQA----NSVPPKQIF 712 (884)
Q Consensus 638 ~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~----n~~lP~~II 712 (884)
+.-|-++|+||-... -.|+++|.-.|+.+.+ .|-.+.+... +-.|+.. +|.+.|...++. .+.+|+-||
T Consensus 383 p~rIE~fDiSh~~G~---~~V~smVvf~~G~~~k~~YR~f~i~~~--~~~dDya-~m~Evl~RR~~~~~~~~~~~PDLil 456 (598)
T PRK00558 383 PYRIECFDISHIQGT---ATVASMVVFEDGGPDKSEYRRYNIKGV--TGGDDYA-AMREVLTRRYSRLLKEFGPLPDLIL 456 (598)
T ss_pred CCEEEEEECCccCCC---cceEEEEEEECCccChhhCCeeecCCC--CCCCHHH-HHHHHHHHHhhccccccCCCCCEEE
Confidence 456779999997543 5688888888865543 2333333321 1124444 333444333322 346899998
Q ss_pred EeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeee
Q psy11920 713 IFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQK 761 (884)
Q Consensus 713 iYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~K 761 (884)
| || |-||+ .+..++++++ +. .+.+|-..|
T Consensus 457 i--DG-GkgQl--------~~a~~~l~~l-------g~--~i~v~glaK 485 (598)
T PRK00558 457 I--DG-GKGQL--------NAAKEVLEEL-------GL--DIPVVGLAK 485 (598)
T ss_pred E--eC-CHHHH--------HHHHHHHHHC-------CC--CCcEEEEEe
Confidence 8 77 45664 4455677666 43 355666555
No 23
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=58.43 E-value=17 Score=44.47 Aligned_cols=105 Identities=19% Similarity=0.290 Sum_probs=61.1
Q ss_pred eeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHH-hhhc---CCCCCceEE
Q psy11920 638 CAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDR-FIQA---NSVPPKQIF 712 (884)
Q Consensus 638 ~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~-f~~~---n~~lP~~II 712 (884)
+--|-++|+||-... -.|+++|.-.|+...+ .|-.+.+... +-.|+... |.+.|.. |.+. ++.+|+-||
T Consensus 415 p~rIE~fDiSh~~G~---~~V~smVvf~~G~~~k~~YR~f~ik~~--~~~dDy~~-m~Evl~RR~~r~~~~~~~~PDLil 488 (621)
T PRK14671 415 PRRIECFDNSHFQGT---DYVSSMVCFVDGKPKKSDYRKFKLRSF--EGSDDYAA-MREVVTRRYSGSLAEELPLPDLIV 488 (621)
T ss_pred CCEEEEEECCccCCC---CceEEEEEEECCccChhhCCeeecCCC--CCCCHHHH-HHHHHHHHhhccccccCCCCCEEE
Confidence 456779999997543 5688888888865543 2333334321 11355543 3344433 3331 135899988
Q ss_pred EeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 713 IFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 713 iYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
| || |-|| |.+..++++++ +. .+.+|-..|+. .++|.
T Consensus 489 I--DG-GkgQ--------l~aa~~vl~~l-------g~--~i~viglaK~~-e~i~~ 524 (621)
T PRK14671 489 I--DG-GKGQ--------VNSAWKVLQEL-------GL--SVPVIGLAKRL-EEIFT 524 (621)
T ss_pred E--eC-CHHH--------HHHHHHHHHHc-------CC--CCcEEEEEecc-cEEEe
Confidence 8 77 4566 34456677666 43 46677777843 55554
No 24
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=55.53 E-value=23 Score=42.82 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=62.4
Q ss_pred ceeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhhc----CCCCCceE
Q psy11920 637 DCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQA----NSVPPKQI 711 (884)
Q Consensus 637 ~~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~----n~~lP~~I 711 (884)
.+.-|-++|+||-... -.|+++|.-.|+...+ .|-.+.+... +-.|+.. +|.+.|...++. ++.+|+-|
T Consensus 360 ~p~rIE~fDiSh~~G~---~~V~smVvf~~G~~~k~~YR~f~i~~~--~~~dD~~-~m~Evl~RR~~r~~~~~~~~PDLi 433 (567)
T PRK14667 360 LPERIEGFDISHFYGE---FTVGSCVVWEDGSMNKKEYRRYKIKTV--DGIDDYA-SLREVLTRRARRYKEGENPMPDLW 433 (567)
T ss_pred CCCeEEEEECcccCCC---cceEEEEEEECCccChhhCCeeecCCC--CCCCHHH-HHHHHHHHHhhhccccCCCCCCEE
Confidence 3566789999996543 5688999888865543 3333444321 1135554 334444443322 22589998
Q ss_pred EEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 712 FIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 712 IiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
|| || |-|| +.+..++++++ +. .+.+|-..|+. .++|.
T Consensus 434 li--DG-GkgQ--------l~aa~~~l~~l-------g~--~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 434 LI--DG-GKGQ--------LSVGIEVRDRL-------GL--NIKVFSLAKKE-EILYT 470 (567)
T ss_pred EE--eC-CHHH--------HHHHHHHHHHc-------CC--CCcEEEEEecC-cEEEc
Confidence 88 77 4566 34556677666 43 46677777764 44654
No 25
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=54.66 E-value=25 Score=42.67 Aligned_cols=108 Identities=17% Similarity=0.248 Sum_probs=61.8
Q ss_pred ceeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhhcC--CCCCceEEE
Q psy11920 637 DCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQAN--SVPPKQIFI 713 (884)
Q Consensus 637 ~~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n--~~lP~~IIi 713 (884)
.+.-|-++|+||-... -.|+++|.-.|+...+ .|-.+.+.. +..-...|.+.+...+..+.+.. +.+|+-|||
T Consensus 374 ~p~rIE~fDiSh~~G~---~~V~s~Vvf~~G~~~k~~YR~f~i~~-~~dD~~~m~Evl~RR~~r~~~~~~~~~~PDLili 449 (577)
T PRK14668 374 RPERIEGFDVSHAQGR---AVVGSNVCFVDGSAETADYRRKKLTE-RNDDYANMRELVRWRAERAVEGRDDRPDPDLLLI 449 (577)
T ss_pred CCCEEEEEECCccCCC---CceEEEEEEECCccCHHHcCeecCCC-CCChHHHHHHHHHHHHHhhhccccCCCCCCEEEE
Confidence 3457789999997543 5688888888865543 333444443 21111234444444444333221 258998888
Q ss_pred eeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 714 FRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 714 YRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
|| |-|| |.+..+++.++ +. .+.+|-..|+. .++|.
T Consensus 450 --DG-G~gQ--------l~aa~~~l~el-------g~--~i~v~glaK~~-e~i~~ 484 (577)
T PRK14668 450 --DG-GDGQ--------LGAARDALAET-------GW--DVPAIALAKAE-ELVVT 484 (577)
T ss_pred --eC-CHHH--------HHHHHHHHHHc-------CC--CCcEEEEEcCC-eEEEc
Confidence 76 4555 34556677666 43 46677777754 34443
No 26
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=49.99 E-value=30 Score=42.30 Aligned_cols=106 Identities=18% Similarity=0.290 Sum_probs=60.4
Q ss_pred eeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHH-hhh---cCCCCCceEE
Q psy11920 638 CAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDR-FIQ---ANSVPPKQIF 712 (884)
Q Consensus 638 ~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~-f~~---~n~~lP~~II 712 (884)
+.-|-++|+||-... -.|+++|.-.|+...+ .|-.+.+-.. +-.|+... |.+.|.. |.+ .+..+|+-||
T Consensus 396 p~rIE~fDiSh~~G~---~~V~smVvf~~G~~~k~~YRkf~Ik~~--~~~DDya~-M~Evl~RR~~r~~~~~~~~PDLil 469 (624)
T PRK14669 396 PSRIECFDISHIQGA---ETVASMVVWEDGKMKKSDYRKFIIKTV--VGVDDFAS-MREVVTRRYSRLQEEKQPMPGLVL 469 (624)
T ss_pred CCeEEEEECCccCCC---CceEEEEEEECCccChhhCCeeecCCC--CCCCHHHH-HHHHHHHHhhccccccCCCCCEEE
Confidence 456779999996543 5688888888865543 3333333221 11244443 3333333 322 1224899988
Q ss_pred EeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 713 IFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 713 iYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
| || |-||+ .+.++++.++ +.. .+.+|-..|+. .++|.
T Consensus 470 I--DG-GkgQl--------~aa~~vl~el-------gl~-~i~vigLaK~~-e~i~~ 506 (624)
T PRK14669 470 I--DG-GLGQL--------HAAAEALEAI-------GIT-DQPLASIAKRE-EIIYV 506 (624)
T ss_pred E--eC-CHHHH--------HHHHHHHHHc-------CCC-CCcEEEEecCC-eEEEC
Confidence 8 77 45663 4556677666 432 26677777765 34554
No 27
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=49.70 E-value=34 Score=42.00 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=59.1
Q ss_pred eeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhhcCCCCCceEEEeec
Q psy11920 638 CAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRD 716 (884)
Q Consensus 638 ~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRD 716 (884)
+.-|-++|++|-... -.|+|+|.-.|+...+ .|-.+.+-.. + .|+...|-.-+-+.|.+. ..+|+-|+| |
T Consensus 472 p~rIE~~DiSh~~G~---~~v~~mVvf~~G~p~k~~YR~f~i~~~--~-~dD~~~m~ev~~RR~~~~-~~~PDLili--D 542 (694)
T PRK14666 472 PHRIEAVDVSHTGGR---NTRVGMVVFEDGKPARDAYRTYAFEDG--E-GDDYGTLAAWAGRRVESG-PPWPDLLLV--D 542 (694)
T ss_pred CCEEEEEECcccCCc---CceEEEEEEECCccChhhCCeeeCCCC--C-CChHHHHHHHHHHHhcCC-CCCCCEEEE--c
Confidence 457789999997543 5688888888865543 3333333321 2 256554444344444332 358998888 7
Q ss_pred cCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeee
Q psy11920 717 GVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQK 761 (884)
Q Consensus 717 GVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~K 761 (884)
| |-||+ .+..++++++ +....+.+|-..|
T Consensus 543 G-G~gQl--------~aa~~~l~e~-------g~~~~~~v~~laK 571 (694)
T PRK14666 543 G-GRGQL--------AAVVRALEEA-------GMGGLFAVASIAK 571 (694)
T ss_pred C-CHHHH--------HHHHHHHHHc-------CCCCCccEEEEec
Confidence 6 45664 4556677766 3322367777777
No 28
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=48.78 E-value=31 Score=42.27 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=63.7
Q ss_pred ceeEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhhc---CCCCCceEE
Q psy11920 637 DCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQA---NSVPPKQIF 712 (884)
Q Consensus 637 ~~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~---n~~lP~~II 712 (884)
.+..|-++|++|-... -.|+++|.-.|+...+ .|-.+.+.... .-.|++. +|.+.|...+.. ...+|+-||
T Consensus 453 ~p~rIE~fDiSh~~G~---~~VasmVvf~~G~p~k~~YR~f~ik~~~-~~~DD~a-sM~Evl~RR~~r~~~~~~~PDLil 527 (691)
T PRK14672 453 IPTLIEGFDISHLGGK---YTVASLICFKNGAPDTKNYRLFNLRAHD-TRIDDFA-SMREAIARRYTHTPEGYTLPDLIL 527 (691)
T ss_pred CCCeEEEEECCccCCc---CceEEEEEEECCccChhhCCeeeccCCC-CCCchHH-HHHHHHHHHhhcccccCCCCCEEE
Confidence 3678899999997543 5688888888865543 33334443211 1135554 344444444332 235899888
Q ss_pred EeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 713 IFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 713 iYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
| || |-|| |.+.+++++++ +. .+.+|-..||. ..+|.
T Consensus 528 I--DG-GkgQ--------l~aa~~vl~el-------gl--~i~vigLaKr~-e~i~~ 563 (691)
T PRK14672 528 V--DG-GIGH--------VSAAQHVLDAL-------GL--SIPLVGLAKRA-EELFI 563 (691)
T ss_pred E--eC-CHHH--------HHHHHHHHHHc-------CC--CCcEEEEEecc-cEEEe
Confidence 8 76 4555 44556677666 43 46778888865 44554
No 29
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=36.92 E-value=77 Score=38.42 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=61.2
Q ss_pred eEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhhcC-CCCCceEEEeec
Q psy11920 639 AMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQAN-SVPPKQIFIFRD 716 (884)
Q Consensus 639 tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n-~~lP~~IIiYRD 716 (884)
.-|-++|.+|-... -.|+++|-..|....+ .|-++.+.- +-.|+...|..=.-+.|.+.- ..+|+-|+| |
T Consensus 380 ~rIE~~D~Sh~~g~---~~V~smvvf~~g~~~k~~YRry~i~~---~~~dDya~m~evl~RR~~~~~~~~~Pdli~i--D 451 (581)
T COG0322 380 YRIECFDISHIQGE---DTVGSMVVFEDGGPSKKDYRRYNIKI---TGGDDYASMREVLTRRYSRLLKEELPDLILI--D 451 (581)
T ss_pred eeEEEeecCccccc---cceeEEEEEcCCCCChhhcccccccC---CCCchHHHHHHHHHHHhhhccccCCCCEEEE--e
Confidence 34458999997543 5578888777765443 333332221 114555544444444565543 389977777 7
Q ss_pred cCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 717 GVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 717 GVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
| |.||+ .+.+++++++ +.... +|-+.|+-..-|++
T Consensus 452 G-GkgQl--------~~a~~vl~~l-------~~~~~--viglaK~~~~~~~~ 486 (581)
T COG0322 452 G-GKGQL--------NAAKEVLKEL-------GLDIP--VIGLAKGEEELLLP 486 (581)
T ss_pred C-CHHHH--------HHHHHHHHHc-------CCCcc--EEEEEecCceeEec
Confidence 6 56664 4556777776 44333 77788877644443
No 30
>KOG2677|consensus
Probab=36.80 E-value=56 Score=39.11 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=24.7
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11920 26 RPGSLPTTSTDDTTGSHAPGIPSPSTSSPSQASEPAP 62 (884)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (884)
.-+.++++....+||++||++|+++.+-|+...++++
T Consensus 64 ~~~~~~~~~~~~~~~t~a~~~p~~a~~~~p~~~~~~~ 100 (922)
T KOG2677|consen 64 VQELSPTPEASSSTGTSAPARPPPARPEAPKKDETAV 100 (922)
T ss_pred ccccCCCccccccccccCCCCCCCCCCCCCCcccccc
Confidence 3345666777777888888887777766665555543
No 31
>KOG4350|consensus
Probab=32.32 E-value=44 Score=37.88 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=13.4
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q psy11920 26 RPGSLPTTSTDDTTGSHAPGIPSPSTSSPS 55 (884)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (884)
..|..-|..+|.+-.||+.. ||++||.|
T Consensus 578 e~~t~~ts~sgssl~s~~~~--sps~ss~p 605 (620)
T KOG4350|consen 578 EKKTAKTSTSGSSLASGHAE--SPSTSSTP 605 (620)
T ss_pred hcccccccccccchhccccc--CCCCCCCC
Confidence 33444444455555555543 44455543
No 32
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=28.51 E-value=2e+02 Score=26.49 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=11.3
Q ss_pred HHhcCcccCCCCCCCC
Q psy11920 74 LLAKGVVPTSGTPGPG 89 (884)
Q Consensus 74 ~~~~~~~~~~~~~~~~ 89 (884)
|.-.+++.++.+++|.
T Consensus 87 Lsi~~e~s~sQaiQp~ 102 (104)
T PF12764_consen 87 LSIQQESSPSQAIQPA 102 (104)
T ss_pred HhhccCCCcccccCCC
Confidence 4337788888888764
No 33
>PRK11617 endonuclease V; Provisional
Probab=24.06 E-value=1.1e+02 Score=32.48 Aligned_cols=120 Identities=11% Similarity=0.078 Sum_probs=66.0
Q ss_pred eeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhhhhcc-----C--CCCCCCCCCCCceeeeeecccccceE
Q psy11920 728 RVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSA-----G--ERPNLANAPSGSVLDHTVTRKTLSDF 800 (884)
Q Consensus 728 ~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~~~~~-----~--~~~~~~NpppGTVVD~~it~p~~~dF 800 (884)
..|++.|.++++++ ...|.+.+|=-+=.-|.|.|-.-.. + .-+-..|..-|+.-+-. ....|+
T Consensus 81 FRE~P~~l~al~~l-------~~~PdlllvDG~G~~HPR~~GlA~HlGv~~~~PtIGVAK~~L~g~~~~~~---~~~G~~ 150 (224)
T PRK11617 81 FREYPALLAAWEQL-------SQKPDLVFVDGHGIAHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLS---EEPGSL 150 (224)
T ss_pred HhhHHHHHHHHHhc-------CcCCCEEEEcCceeECCCCcceeeEEEeecCCCEEEEEcccccCCCcCcc---ccCCce
Confidence 46999999999988 4466666665555567776531100 0 00112233344332211 011121
Q ss_pred -EEEeeccc-------ccccccceeEEEeccCCCCccchhhhhhhhheeeccCCceeeeCcchhhhHHHHHhhcc
Q psy11920 801 -FLVSQHVR-------QGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGM 867 (884)
Q Consensus 801 -yLvSq~~~-------qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~isvPaP~~YAhklA~~vg~ 867 (884)
+|.-..-. +..++|....+ -..++.|+--.++-++|- --|+|.|+..||.+|....+
T Consensus 151 ~~l~~~g~vvG~~lrt~~~~kPiyVS~---Gh~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~ 215 (224)
T PRK11617 151 QPLMDKGEQLGWVWRSKARCNPLFIST---GHRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPA 215 (224)
T ss_pred eeEeECCEEEEEEEEcCCCCCCEEEcC---CCCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhh
Confidence 22211111 12346654322 345788888888888764 33899999999999876544
No 34
>smart00553 SEP Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
Probab=23.66 E-value=1.7e+02 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=21.9
Q ss_pred ceEEEeecc--CCCCcccccceeehhhhHHHHH
Q psy11920 709 KQIFIFRDG--VSDGQLDSVSRVEIDQYQQIVD 739 (884)
Q Consensus 709 ~~IIiYRDG--VseGq~~~v~~~Ev~~i~~a~~ 739 (884)
-.|.+|||| |.||.|...-+-|=.++.++++
T Consensus 5 ~~ltlw~nGFtVdDGplr~yddP~N~~FL~~I~ 37 (93)
T smart00553 5 VVLTFWSNGFSVDDGPLRTYDDPENAEFLESIR 37 (93)
T ss_pred EEEEEecCCcEecCCCcccCCCHhHHHHHHHHH
Confidence 356799999 6699987766555556666654
No 35
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.64 E-value=69 Score=23.15 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=15.2
Q ss_pred HHHHHhhhcCCCCCceEEE
Q psy11920 695 QALDRFIQANSVPPKQIFI 713 (884)
Q Consensus 695 ~aL~~f~~~n~~lP~~IIi 713 (884)
.....|.+.||++|..|-|
T Consensus 15 ~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 15 SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHcCCCCCeeeC
Confidence 4567899999999998743
No 36
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=21.98 E-value=2.4e+02 Score=29.47 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q psy11920 82 TSGTPGPGG 90 (884)
Q Consensus 82 ~~~~~~~~~ 90 (884)
+.++.+|.+
T Consensus 181 ssPaetp~g 189 (205)
T PF12238_consen 181 SSPAETPQG 189 (205)
T ss_pred CCCCCCccc
Confidence 333333333
Done!