Query psy11920
Match_columns 884
No_of_seqs 272 out of 1121
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 22:22:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 1E-153 3E-158 1406.6 37.2 741 112-884 26-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 7E-135 2E-139 1238.5 35.1 739 115-884 21-1046(1046)
3 1u04_A Argonaute, hypothetical 100.0 2E-123 8E-128 1108.5 24.0 678 125-884 3-771 (771)
4 1yvu_A Hypothetical protein AQ 100.0 2E-113 8E-118 1023.9 19.6 661 128-884 5-706 (706)
5 3ho1_A Argonaute; argonaute, p 100.0 1.5E-97 5E-102 872.2 28.1 658 125-884 6-685 (685)
6 2yhb_A QDE-2, post-transcripti 100.0 3.7E-96 1E-100 836.2 11.9 383 495-884 2-437 (437)
7 2yha_A Post-transcriptional ge 100.0 3.4E-79 1.2E-83 688.1 11.6 334 495-884 2-388 (388)
8 2w42_A PIWI, putative uncharac 100.0 1.9E-62 6.5E-67 559.0 -1.5 384 469-884 5-427 (427)
9 3qir_A PIWI-like protein 2; st 100.0 8.7E-36 3E-40 289.5 6.2 147 287-435 1-148 (148)
10 2xfm_A MIWI, PIWI-like protein 100.0 2.1E-33 7.3E-38 275.1 7.1 148 287-437 1-150 (150)
11 3o7v_X PIWI-like protein 1; PI 100.0 8E-31 2.7E-35 246.9 3.6 122 288-412 1-124 (124)
12 4g0x_A Protein argonaute 1; MI 99.9 1.8E-25 6.3E-30 218.4 2.8 134 497-632 2-147 (147)
13 4g0o_A Protein argonaute 5; MI 99.9 2.6E-25 8.8E-30 215.3 3.1 132 497-632 2-139 (139)
14 4g0m_A Protein argonaute 2; MI 99.9 3E-24 1E-28 210.5 4.4 133 497-632 2-150 (150)
15 3luc_A Protein argonaute-2; MI 99.9 4.1E-24 1.4E-28 206.6 2.7 131 496-629 1-138 (138)
16 1vyn_A Argonaute2; nucleic aci 99.8 7.9E-20 2.7E-24 177.4 3.9 104 287-404 3-120 (143)
17 3mj0_A Protein argonaute-2; ar 99.7 1E-18 3.5E-23 165.0 3.9 103 287-403 1-117 (124)
18 2qvw_A GLP_546_48378_50642; di 99.4 1.1E-14 3.7E-19 175.3 1.4 103 305-410 145-259 (756)
19 1r6z_P Chimera of maltose-bind 99.2 5.8E-12 2E-16 147.3 3.4 108 284-404 380-500 (509)
20 2nrr_A Uvrabc system protein C 66.2 4.4 0.00015 39.0 3.9 102 639-769 18-120 (159)
21 2nrt_A Uvrabc system protein C 47.9 9.4 0.00032 38.8 2.9 102 639-769 23-125 (220)
22 3c65_A Uvrabc system protein C 47.2 16 0.00055 37.3 4.5 102 638-762 14-118 (226)
23 3qbz_A DDK kinase regulatory s 26.1 16 0.00053 35.0 0.3 69 693-764 44-119 (160)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=1e-153 Score=1406.64 Aligned_cols=741 Identities=22% Similarity=0.366 Sum_probs=634.3
Q ss_pred CCCCeeecccCCCceEEEEEeeeeeeecCCceeEEEeeeCCCCCchhhhhhHHhhHH-----hhhccc-ccccc-cceee
Q psy11920 112 PSEPVYFRGELGQPIKVMVNYIDLSVKEGSGMYEYEVKFNPPIDSRGIRNRLINSLN-----DLLGQY-KTFDG-MNLFL 184 (884)
Q Consensus 112 ~~~~~~~~Gt~G~~v~l~tN~f~l~~~~~~~iy~Y~V~~~P~~~~~~~r~~ll~~~~-----~~~g~~-~~fDG-~~L~s 184 (884)
...+++++||.|++|.|.||||+|++ +++.+|||||+|+|+.+++++++++++.+. ++||.. ++||| ++||+
T Consensus 26 ~~p~RPg~Gt~G~~i~l~aN~F~v~~-~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s 104 (861)
T 4f3t_A 26 KPPPRPDFGTSGRTIKLQANFFEMDI-PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYT 104 (861)
T ss_dssp CCCBCCCCCCCSEEEEEEESEEEEEC-CSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEE
T ss_pred cCCCCCCCCCCCcEEEEEeeeEEEEC-CCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEE
Confidence 34455689999999999999999998 678999999999999999999998887442 346543 59999 78999
Q ss_pred eeeeccc--ccccccc-cccC--Cc--eEEEEEEehhHH-------------HHhhhhHHHHHHHHHHHHHhhhcccccc
Q psy11920 185 PFKLSSD--TVNTTCQ-TREG--SD--VQITIIFKRQRQ-------------FYENLMFYNILFRKIAFLLSMVQFKDCL 244 (884)
Q Consensus 185 ~~~L~~~--~~~~~~~-~~~g--~~--i~i~~~~~~~~~-------------~~~~iq~lNii~r~~l~~l~~~~iGR~f 244 (884)
+.+|+.+ ..++... ..++ +. |+|+++++++.. .+++||+||||||+ +..+++.++||+|
T Consensus 105 ~~~L~~~~~~~~~~v~~~~~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~-~~~~~~~~vGR~F 183 (861)
T 4f3t_A 105 AMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRH-LPSMRYTPVGRSF 183 (861)
T ss_dssp SSCCSCSSCEEEEECCC-------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-HHHHHSEEETTEE
T ss_pred CCcCCCCCcceEEEEecCCCCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-hccccccccCCCc
Confidence 9999853 2333221 1122 23 999999999864 36899999999999 6778999999999
Q ss_pred cCCCcccccc-ccceeecCcceeeeecccCceeEEeecccee-eecchhhhHHHHHHHhh---------cCcHHHHHHHh
Q psy11920 245 YDPRSKLLIP-QYKLEVWPGFVTAIDEYEGGLKLQIDTSCRV-LRTSTCLDLIDELKEKF---------GGNFMERLSQA 313 (884)
Q Consensus 245 f~~~~~~~i~-~~~leiw~Gf~~Sir~~e~~l~L~iDvs~k~-~r~~tvld~~~~~~~~~---------~~~~~~~~~k~ 313 (884)
|++..+..++ ++|+|+|+||++|||+++++++||+|++|++ ++++||+|+|.++++.. ...+++++.++
T Consensus 184 f~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 263 (861)
T 4f3t_A 184 FTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKE 263 (861)
T ss_dssp ECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHHHH
T ss_pred cCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHHHH
Confidence 9987665444 5799999999999999999999999999995 68999999999887531 12356789999
Q ss_pred hhheeEEEee---cCceeeeeccccccCccccccc--cCC--C-cchhhhhhhhcceeeccCCCceeEEeeecccccCcC
Q psy11920 314 LIGEIVLTRY---NNQTYRIDEIDFKQTPMSTFTK--RGE--P-KSYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTN 385 (884)
Q Consensus 314 L~Gl~V~t~y---nnktyrI~~I~~~~~p~~tF~~--~dG--~-iSv~dYyk~~Yni~i~~~~qPllv~~~k~~~~~~~~ 385 (884)
|+|++|.|.| +||+|+|+||++..+.+.+|.+ ++| . |||+|||+++||++|+||+||||++..+
T Consensus 264 LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~-------- 335 (861)
T 4f3t_A 264 IKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQE-------- 335 (861)
T ss_dssp HTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCT--------
T ss_pred hCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCC--------
Confidence 9999998877 5799999999998888888964 345 3 9999999999999999999999976422
Q ss_pred cccceehhhhhhhhhHhh-------cchHHhhhhHHHHhhhccccccCCchhHHHHHHhhhccCCchhhhhhhhcccccc
Q psy11920 386 VEESHYIAAIVPELAFLT-------GLSDAMRNDFQVMKSIASFTRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTL 458 (884)
Q Consensus 386 ~~~~~~~~~lppELC~it-------gLtd~~r~d~~~mk~l~~~t~~~P~~R~~~i~~~~~~l~~~~~~~~~L~~~Gl~i 458 (884)
. +++|||||||.++ +|+++|++| |++.++..|++|.+.|.++++.++.+. .++|+.|||+|
T Consensus 336 -~---~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~------mik~~~~~P~~R~~~I~~~~~~l~~~~--~~~l~~fGi~i 403 (861)
T 4f3t_A 336 -Q---KHTYLPLEVCNIVAGQRCIKKLTDNQTST------MIRATARSAPDRQEEISKLMRSASFNT--DPYVREFGIMV 403 (861)
T ss_dssp -T---TTEEEEGGGEEECTTCBCCSCCCHHHHHH------HHHHHCCCHHHHHHHHHHHHHHHCGGG--CHHHHHTTCEE
T ss_pred -C---CCccccceeEEeeCCccccccCCHHHHHH------HHHHHccCHHHHHHHHHHHHHHhcCCC--chHHHHCCCEE
Confidence 1 5799999999997 799999886 344667899999999999999887654 36999999999
Q ss_pred ccchhhhcceeeeeeeEeccCccc-cCCCcccccccccCCCCceEEEecccEEEEEEec----ccccchhhhhhcccCCc
Q psy11920 459 NKSMETLNARILPVEKIYMGNNFV-APGSQEADWNRQVGTNPALTVVNFDQWVLIHIRR----DQRNADNFLNCLNRNSN 533 (884)
Q Consensus 459 ~~~~~~v~grvLp~p~I~~g~~~~-~~~~~~g~W~~~~r~~~~~~~~~l~~W~vv~~~~----~~~~~~~f~~~L~~~~~ 533 (884)
+++|++|+|||||||+|.|+++.. ...+.+|+|+ +++++|+.++++++|+++++.. +.+.+++|+++|.+.|+
T Consensus 404 ~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~--~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~ 481 (861)
T 4f3t_A 404 KDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWD--MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISR 481 (861)
T ss_dssp CSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCC--CTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHH
T ss_pred eCCeeEEEEEEecCceEEecCCcccccCCCCCcee--ccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHh
Confidence 999999999999999999997532 2357789997 7999999999999999999753 34568999999999999
Q ss_pred eeeeeeeC-ceEEEec--cchhhhHHHHhhhcccCceEEEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhh
Q psy11920 534 AIGIRVKK-PQVIALQ--EEQTLSYLTALKSMRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKM 610 (884)
Q Consensus 534 ~~Gi~i~~-P~~~~~~--~~~~~~~~~~l~~~~~~~~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~ 610 (884)
.+||.+.. |.+.... .++.+.+++.++....++||||||+|++ ++.|+.||++||++.|||||||..+++.+. .
T Consensus 482 ~~G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~--~ 558 (861)
T 4f3t_A 482 DAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRT--T 558 (861)
T ss_dssp HHTCCBCSCCSEEEECCSSSSHHHHHHHHHHHSTTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSC--C
T ss_pred hCCcccCCCCeEEEecCchHHHHHHHHHHHhhcCCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccc--c
Confidence 99999985 6655442 3566788887773335789999999964 689999999999999999999999998764 3
Q ss_pred hhHHhhhhhhcccccCcceeEEee---c---cceeEEEeeeeeecccCC-CCCceEEEEecccCCchhhhhHHHHHhccc
Q psy11920 611 KSIVMKIALQINCKLGGSLWSVQI---P---YDCAMVIGIDVYHEGVGS-QGQNIVGLVASTNKDFTTYYSQAVIQRRGQ 683 (884)
Q Consensus 611 ~~~~~nI~lkiN~KLGG~~w~v~~---p---~~~tMivGiDV~H~~~~~-~~~Sv~g~VaS~d~~~t~y~s~~~~Q~~~~ 683 (884)
.+++.||+|||||||||+||.+.. | .++|||||+||+|++++. ..||+||||||+|.++++|++.+++|.+++
T Consensus 559 ~q~~~ni~lKiN~KlGG~n~~l~~~~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~ 638 (861)
T 4f3t_A 559 PQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQ 638 (861)
T ss_dssp HHHHHHHHHHHHHHTTCBCCEECSTTSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECSSSSCCEEEEEEEESTTC
T ss_pred HHHHHHHHHHHHHhcCCcceeccccccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcCCCcceEEEEEEEcCCCc
Confidence 689999999999999999998852 2 368999999999998763 239999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHHhhhcCCCCCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeec
Q psy11920 684 EITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRI 763 (884)
Q Consensus 684 ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh 763 (884)
|++++|++|+.++|+.|++.|+.+|++|||||||||||||++|+++|+++|++||+++ .. +|+|+||||||+|||
T Consensus 639 E~i~~l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~---~~--~~~P~it~Ivv~Krh 713 (861)
T 4f3t_A 639 EIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKL---EK--DYQPGITFIVVQKRH 713 (861)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHH---CT--TCCCEEEEEEEECCS
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHh---cc--CCCCcEEEEEEEccc
Confidence 9999999999999999999999999999999999999999999999999999999999 55 789999999999999
Q ss_pred chhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEeecccccccccceeEEEeccCCCCccchhhhhhhhheeec
Q psy11920 764 NTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYY 843 (884)
Q Consensus 764 ~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~ 843 (884)
|+|||+.+..+..++.+|||||||||++||+|.+|||||+||.++|||+|||||+|||||+++++|+||+|||+|||+|+
T Consensus 714 ~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~ 793 (861)
T 4f3t_A 714 HTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYV 793 (861)
T ss_dssp CCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCT
T ss_pred cceeeecCCcccccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHHHHHHhhhhh
Confidence 99999964323346789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeCcchhhhHHHHHhhccccCC---------------------------CCchhhhhccccC
Q psy11920 844 NWPGTIRVPAVCQYAHRIAYLTGMHLQR---------------------------LPSDVLSDKLFYL 884 (884)
Q Consensus 844 ~~~~~isvPaP~~YAhklA~~vg~~i~~---------------------------~p~~~L~~~lfyL 884 (884)
||+++|||||||||||++|+|+..++.. ..|++|+|+|||.
T Consensus 794 ~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 794 RCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp TSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------CCSTTHHHHTCCCHHHHTTTTTC
T ss_pred ccCCCCCCchHHHHHHHHHHHHHHhhccccccCCccccccCCCcccchhhhhhhhhhhhhhccCceeC
Confidence 9999999999999999999986544311 2678899999994
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=7.2e-135 Score=1238.49 Aligned_cols=739 Identities=19% Similarity=0.273 Sum_probs=576.0
Q ss_pred CeeecccCCCceEEEEEeeeeeeecC--------------------CceeEEEeeeCCCCCc--------------hhhh
Q psy11920 115 PVYFRGELGQPIKVMVNYIDLSVKEG--------------------SGMYEYEVKFNPPIDS--------------RGIR 160 (884)
Q Consensus 115 ~~~~~Gt~G~~v~l~tN~f~l~~~~~--------------------~~iy~Y~V~~~P~~~~--------------~~~r 160 (884)
.++.+||.|++|.|+||||.|.+.++ ..||+|+|+|.|+... ++.+
T Consensus 21 ~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~k~ 100 (1046)
T 4f1n_A 21 NRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQELSKPKK 100 (1046)
T ss_dssp BCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-----------------CCHHHH
T ss_pred CCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCcccccchhHH
Confidence 34679999999999999999999655 2899999999986432 3455
Q ss_pred hhHHhhHH------hhhcccccccc-cceeeeeeecc-----cccccccc------cccC------------------Cc
Q psy11920 161 NRLINSLN------DLLGQYKTFDG-MNLFLPFKLSS-----DTVNTTCQ------TREG------------------SD 204 (884)
Q Consensus 161 ~~ll~~~~------~~~g~~~~fDG-~~L~s~~~L~~-----~~~~~~~~------~~~g------------------~~ 204 (884)
++|+..+- ..++...+||| ++|||..+|++ +..++... ..+| ..
T Consensus 101 ~~ii~~ll~e~~~~~~~~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1046)
T 4f1n_A 101 YELIEALLDEDEILYKYRDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQKKIDPELEEMV 180 (1046)
T ss_dssp HHHHHHHHHSCTTTGGGTTSEEECSSSEEEESSCGGGSTTCTTCCC-------------------------------CGG
T ss_pred HHHHHHHHHhcchhhhcCCceeecCccceEECCcCCccccCCCceEEeccccccccCCcccccccccccccccccccCce
Confidence 55554432 12555689999 99999999993 21111111 0111 12
Q ss_pred --eEEEEEEehhHHH------------------HhhhhHHHHHHHHHHHHH-h-hhccccc-ccCCC--cccccccccee
Q psy11920 205 --VQITIIFKRQRQF------------------YENLMFYNILFRKIAFLL-S-MVQFKDC-LYDPR--SKLLIPQYKLE 259 (884)
Q Consensus 205 --i~i~~~~~~~~~~------------------~~~iq~lNii~r~~l~~l-~-~~~iGR~-ff~~~--~~~~i~~~~le 259 (884)
|+|+++++++..+ .+.+++||+|+...+++. + ...+|+| ||... ......++|+|
T Consensus 181 ~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~~~~~~~Lg~Gle 260 (1046)
T 4f1n_A 181 SQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFAKAIPFQIGGY 260 (1046)
T ss_dssp GGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECSTTCCEEECSSSEE
T ss_pred EEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCCCCccccCCCcEE
Confidence 9999999886532 457899999999988755 2 3677765 66322 22222367999
Q ss_pred ecCcceeeeecccCceeEEeeccceeeec------------------chhhhHHHHHHHhh-----------------cC
Q psy11920 260 VWPGFVTAIDEYEGGLKLQIDTSCRVLRT------------------STCLDLIDELKEKF-----------------GG 304 (884)
Q Consensus 260 iw~Gf~~Sir~~e~~l~L~iDvs~k~~r~------------------~tvld~~~~~~~~~-----------------~~ 304 (884)
+|+||++|||+..++|+||||++|++|+. .+|+|+|.++.+.. ..
T Consensus 261 ~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1046)
T 4f1n_A 261 LLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRYNPKTAPPPSVK 340 (1046)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSSCTTTTSCCCCSS
T ss_pred EEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhccccccccccccccccCCCchh
Confidence 99999999999999999999999998874 69999998887521 01
Q ss_pred cH---H---HHHHHhhhheeEEEeecC---------------ceeeeeccccccCccccccccCC--------------C
Q psy11920 305 NF---M---ERLSQALIGEIVLTRYNN---------------QTYRIDEIDFKQTPMSTFTKRGE--------------P 349 (884)
Q Consensus 305 ~~---~---~~~~k~L~Gl~V~t~ynn---------------ktyrI~~I~~~~~p~~tF~~~dG--------------~ 349 (884)
++ + .+++++|+|++|.+.|.+ +.|+|.+|+...+.+.+|..++| .
T Consensus 341 d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~~~~~~~g~~~~ 420 (1046)
T 4f1n_A 341 DLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKKNSAPKPNEKPI 420 (1046)
T ss_dssp HHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC---------------------
T ss_pred hhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCcccccccccCCcCce
Confidence 22 1 569999999999887743 36999999977777788987543 4
Q ss_pred -cchhhhhhhhcceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhh-c------chHHhhhhHHHHhhhcc
Q psy11920 350 -KSYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLT-G------LSDAMRNDFQVMKSIAS 421 (884)
Q Consensus 350 -iSv~dYyk~~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~it-g------Ltd~~r~d~~~mk~l~~ 421 (884)
|||+|||+++||++|+||++|||. .|+ +.+|||+|||.|. | |++ ..+|++
T Consensus 421 ~iTVadYFk~kYni~LkyP~LPcV~--------VG~------~~~ylPmElC~I~pGQr~~kKL~~--------ts~MIK 478 (1046)
T 4f1n_A 421 NINTIDYFKRKYDITLKYPDMKLVN--------LGG------KNDVVPPECLTIVPGQKLKGQIFD--------TKTYID 478 (1046)
T ss_dssp --CHHHHHHHHSCCCCSCTTSCCEE--------CST------TTCEECGGGCCBCTTCBCCSCCCC--------HHHHHH
T ss_pred EEEHHHHHHHHhCcccCCCCCCEEE--------ECC------CCcccccceEEecCCccccccccc--------HHHHHH
Confidence 999999999999999999999993 233 2379999999998 3 333 146778
Q ss_pred ccccCCchhHHHHHHhhhc-cC--CchhhhhhhhccccccccchhhhcceeeeeeeEeccCcccc---------CCCccc
Q psy11920 422 FTRVDPNQKLQAISKYINN-VN--NNKETSELLKGWGLTLNKSMETLNARILPVEKIYMGNNFVA---------PGSQEA 489 (884)
Q Consensus 422 ~t~~~P~~R~~~i~~~~~~-l~--~~~~~~~~L~~~Gl~i~~~~~~v~grvLp~p~I~~g~~~~~---------~~~~~g 489 (884)
+++..|.+|.+.|.+.... +. .+....+.|+.|| +|+.+|++|+|||||||+|.|+++... ..+.+|
T Consensus 479 fAa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G 557 (1046)
T 4f1n_A 479 FSAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKG 557 (1046)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTT
T ss_pred HHccCcHHHHHHHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCC
Confidence 8999999999999987532 21 1112346899999 999999999999999999999986531 235679
Q ss_pred ccccccCCCCceEEEe-cccEEEEEEecc--------cccchhhhhhcccCCceeeeeeeC---ceEEE--------ecc
Q psy11920 490 DWNRQVGTNPALTVVN-FDQWVLIHIRRD--------QRNADNFLNCLNRNSNAIGIRVKK---PQVIA--------LQE 549 (884)
Q Consensus 490 ~W~~~~r~~~~~~~~~-l~~W~vv~~~~~--------~~~~~~f~~~L~~~~~~~Gi~i~~---P~~~~--------~~~ 549 (884)
.|+ |++++|+.++. +.+|.+++.... .+.++.|++.|.+.++.+||.+.. |.++. +..
T Consensus 558 ~Wn--m~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~ 635 (1046)
T 4f1n_A 558 NWN--MKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQG 635 (1046)
T ss_dssp BCC--CTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC----
T ss_pred ccc--CCCCEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCccccccccccccccc
Confidence 998 78999999774 567766654321 246789999999999999999986 33221 100
Q ss_pred -----------------------------chhhhHH-HHhhhcccCceEEEEEecCC-CchhHHhhhhhccccCCCcccc
Q psy11920 550 -----------------------------EQTLSYL-TALKSMRSDTQFVVIIFNAP-RTDRYQAVKKYCCCERPIPSQV 598 (884)
Q Consensus 550 -----------------------------~~~~~~~-~~l~~~~~~~~lvl~Ilp~~-~~~~Y~~IK~~~~~~~gI~SQ~ 598 (884)
+..+..+ +.++.. .+++|||||||++ +.+.|+.||++||+++||+|||
T Consensus 636 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQc 714 (1046)
T 4f1n_A 636 GGRGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSC 714 (1046)
T ss_dssp ------------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEE
T ss_pred cccccccccccccccccccccccccccccchHHHHHHHHHHhc-CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEE
Confidence 1122222 222232 4689999999998 6789999999999999999999
Q ss_pred cccccccchhhhhhHHhhhhhhcccccCcceeEEeecc----------ceeEEEeeeeeecccCCCCCceEEEEecccCC
Q psy11920 599 INSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPY----------DCAMVIGIDVYHEGVGSQGQNIVGLVASTNKD 668 (884)
Q Consensus 599 i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p~----------~~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~ 668 (884)
|..+|+.+. ..+|++||+|||||||||+||.|+.+. .+|||||+||+|++.+.. +||+|||||+|.+
T Consensus 715 v~~~t~~k~--~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~l~~~~~~~ptMiiG~DVtH~p~~~~-~SiaavVaS~d~~ 791 (1046)
T 4f1n_A 715 VVWDNFKKN--SIQYNSNVVMKMNLKLLGSNHSLSIENNKLLIDKESNLPILVLGSDVTHYPEKDQ-NSIASLVGSYDDK 791 (1046)
T ss_dssp EEHHHHTTC--CHHHHHHHHHHHHHHTTCBCCEECTTGGGGGEETTTTEECEEEEEEEECCSSTTC-EEEEEEEECCSSS
T ss_pred Eehhhhccc--cHHHHHHHHHHHHHhcCCeeeeccccccccccccccCCceEEEeeeeecCCCCCC-CeeeEEEEEECCC
Confidence 999998775 367999999999999999999998651 259999999999544444 7999999999999
Q ss_pred chhhhhHHHHHhc-ccchhhhhhhHHHHHHHHhhhc-CCCCCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhc--
Q psy11920 669 FTTYYSQAVIQRR-GQEITDSIAQPFKQALDRFIQA-NSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTT-- 744 (884)
Q Consensus 669 ~t~y~s~~~~Q~~-~~ei~~~l~~~~~~aL~~f~~~-n~~lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~-- 744 (884)
+++|++.+++|.. ++|++++|++||.++|+.|++. |+.+|++|||||||||||||++|+++||++|++||.++...
T Consensus 792 ~t~y~s~~~~Q~~~~~Eii~~L~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~~~~~~ 871 (1046)
T 4f1n_A 792 FTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLN 871 (1046)
T ss_dssp CCCCCEEEEEEEEETCCSCTTGGGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHHTHHHH
T ss_pred cCeEeeEEEEecCCCccHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999998 9999999999999999999998 79999999999999999999999999999999999987321
Q ss_pred -CCCCCCCcceeEEeeeeecchhhhhhhcc--CCCC------CCCCCCCCceeeeeecccccceEEEEeecccccccccc
Q psy11920 745 -LPSCSYAPKITAIIVQKRINTKIFQLLSA--GERP------NLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPS 815 (884)
Q Consensus 745 -~~~~~~~pklt~IvV~Krh~~Rff~~~~~--~~~~------~~~NpppGTVVD~~it~p~~~dFyLvSq~~~qGT~rPt 815 (884)
.. +|+|+||||||+||||+|||+.+.. +..+ ..+||+||||||++||+|.+|||||+||.++|||+|||
T Consensus 872 ~~~--~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPt 949 (1046)
T 4f1n_A 872 GGN--KYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPC 949 (1046)
T ss_dssp TSC--CCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSSCCCE
T ss_pred ccc--CCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEccccCCCcccCc
Confidence 23 7899999999999999999985311 1111 36899999999999999999999999999999999999
Q ss_pred eeEEEeccCCCCccchhhhhhhhheeeccCCceeeeCcchhhhHHHHHhhccccC-------------------------
Q psy11920 816 HYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQ------------------------- 870 (884)
Q Consensus 816 hY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~isvPaP~~YAhklA~~vg~~i~------------------------- 870 (884)
||+|||||+++++|+||+|||+|||+|+||+++|||||||||||++|+|+..+++
T Consensus 950 hY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1046)
T 4f1n_A 950 HYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQPTVSKN 1029 (1046)
T ss_dssp EEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC----------CCCHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHHHHhhhhccccccccccCCccccccCcc
Confidence 9999999999999999999999999999999999999999999999999765542
Q ss_pred ---CCCchhhhhccccC
Q psy11920 871 ---RLPSDVLSDKLFYL 884 (884)
Q Consensus 871 ---~~p~~~L~~~lfyL 884 (884)
-..|+++++.|||+
T Consensus 1030 ~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1030 VLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp HHSCCCCGGGTTSCTTC
T ss_pred cccchhhhhhccceeeC
Confidence 11278999999996
No 3
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=2.2e-123 Score=1108.48 Aligned_cols=678 Identities=16% Similarity=0.195 Sum_probs=542.7
Q ss_pred ceEEEEEeeeeee--ecCCceeEEEeeeCCCCCchhhhhhHHhhHHhhhcccccccccc--eeeeeeecccccccccccc
Q psy11920 125 PIKVMVNYIDLSV--KEGSGMYEYEVKFNPPIDSRGIRNRLINSLNDLLGQYKTFDGMN--LFLPFKLSSDTVNTTCQTR 200 (884)
Q Consensus 125 ~v~l~tN~f~l~~--~~~~~iy~Y~V~~~P~~~~~~~r~~ll~~~~~~~g~~~~fDG~~--L~s~~~L~~~~~~~~~~~~ 200 (884)
++.|.+|||+|.. .|+ .+|||+|+|+|+++++ +|.++|+.|++.+| .++|||+. ||++++|+ .
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~~~~~~~g-~~~fdg~~~~l~~~~~l~----------~ 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIYRLAYENV-GIVIDPENLIIATTKELE----------Y 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHHHHHHHTT-EEEEETTTTEEEESSCCC----------C
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-HHHHHHHHHHhhcC-cEEecCcceeeeccceec----------c
Confidence 5789999999998 688 9999999999999988 99999999999999 79999988 99999986 3
Q ss_pred cCCc--eEEEEEEehhHHHHhhhhHHHHHHHHHHHHHh-----hhcccccccCCCccccccccceeecCcceeeeecccC
Q psy11920 201 EGSD--VQITIIFKRQRQFYENLMFYNILFRKIAFLLS-----MVQFKDCLYDPRSKLLIPQYKLEVWPGFVTAIDEYEG 273 (884)
Q Consensus 201 ~g~~--i~i~~~~~~~~~~~~~iq~lNii~r~~l~~l~-----~~~iGR~ff~~~~~~~i~~~~leiw~Gf~~Sir~~e~ 273 (884)
+|+. |+++++++++ +|++|+|+|++|+.++ +.++||+||+| +.++ .+++|+||.+||+++|+
T Consensus 70 ~~~~~~~~~~~~~~~~------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~~~~---~~~~--~~~~~~~~~tsi~~~e~ 138 (771)
T 1u04_A 70 EGEFIPEGEISFSELR------NDYQSKLVLRLLKENGIGEYELSKLLRKFRKP---KTFG--DYKVIPSVEMSVIKHDE 138 (771)
T ss_dssp SSCCEEEEEECGGGSC------HHHHHHHHHHHHHHTTCSHHHHHHHHTTTSCC---EEET--TEEEEEEEEEEEEECSS
T ss_pred CCCeEEEEEEEcceec------HHHHHHHHHHHHHHcccchHHHHHHhhhcCCC---cccc--ccEEEECceeeEEecCC
Confidence 5655 7777788776 9999999999999998 99999999998 4444 56788888999999999
Q ss_pred ceeEEeeccceeeecchhhhHHHHHHHhhcCcHHHHHHHhhhheeEEEe--------e--cCceeeeeccccccCccc--
Q psy11920 274 GLKLQIDTSCRVLRTSTCLDLIDELKEKFGGNFMERLSQALIGEIVLTR--------Y--NNQTYRIDEIDFKQTPMS-- 341 (884)
Q Consensus 274 ~l~L~iDvs~k~~r~~tvld~~~~~~~~~~~~~~~~~~k~L~Gl~V~t~--------y--nnktyrI~~I~~~~~p~~-- 341 (884)
+++||+|++||++|++||+|+|.++. ++++.+.+.+.|..|+|. | |+++|++++ +|+..|.+
T Consensus 139 ~~ll~~di~hkv~r~~t~~d~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~ 212 (771)
T 1u04_A 139 DFYLVIHIIHQIQSMKTLWELVNKDP-----KELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVK 212 (771)
T ss_dssp CEEEEEEEEEEEEESSCHHHHTTTCH-----HHHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHH
T ss_pred ceEEEEEeeeeEeehhHHHHHHHHHH-----HHHHHHHHhccCcEEeeeccccceeEeecccceeecCC-ccccCCCChh
Confidence 99999999999999999999998775 366777888899999999 8 899999999 99999987
Q ss_pred cc---cccC--CCcchhhhhhhhcceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhhHHHH
Q psy11920 342 TF---TKRG--EPKSYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQVM 416 (884)
Q Consensus 342 tF---~~~d--G~iSv~dYyk~~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d~~~m 416 (884)
+| .+++ |++++.+||+++||+ +|.+||||+++++++ .+++. + +.++|+||||++|| +.|+.||++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~~~~-~~~~~-~---~~i~LiPELc~~TG--~~~~~~~~~M 283 (771)
T 1u04_A 213 YWYNYHIERYWNTPEAKLEFYRKFGQ--VDLKQPAILAKFASK-IKKNK-N---YKIYLLPQLVVPTY--NAEQLESDVA 283 (771)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHCS--CCTTSCEEEEEESCC-------C---CCEEECTTTEEEEE--EGGGC----C
T ss_pred heeceeecCCCCCcchhHHHHHhcCc--CcCCCCeEEecchhh-ccCCC-C---ceeeechHhhhhcC--chhhhhHHHH
Confidence 77 6554 557777777799995 899999999998765 22221 3 68999999999999 5677788999
Q ss_pred hhhccccccCCchhHHHHHHhhhcc-----CCchhhhhhhhccccccccchhhhcceeeeeeeEeccCccccCCCccccc
Q psy11920 417 KSIASFTRVDPNQKLQAISKYINNV-----NNNKETSELLKGWGLTLNKSMETLNARILPVEKIYMGNNFVAPGSQEADW 491 (884)
Q Consensus 417 k~l~~~t~~~P~~R~~~i~~~~~~l-----~~~~~~~~~L~~~Gl~i~~~~~~v~grvLp~p~I~~g~~~~~~~~~~g~W 491 (884)
|+|+++|+++|++|.+.|.+|+++| +.++++.++|+.|| .++.. +.|.+++..+..|.+++- . .+..++|
T Consensus 284 K~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~~--~-~~~~adW 358 (771)
T 1u04_A 284 KEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLNV--Q-KSQLLLW 358 (771)
T ss_dssp CHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC-----------CG
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHhhhh-ccCcC-cccccccccccceeecCc--C-CCccCCc
Confidence 9999999999999999999999999 88888899998888 58766 777777777766776652 1 3456999
Q ss_pred ccccCCCCceEEEe----ccc-----EEEEEEecccccchhhh---------hhcccCCceee-----------eeeeC-
Q psy11920 492 NRQVGTNPALTVVN----FDQ-----WVLIHIRRDQRNADNFL---------NCLNRNSNAIG-----------IRVKK- 541 (884)
Q Consensus 492 ~~~~r~~~~~~~~~----l~~-----W~vv~~~~~~~~~~~f~---------~~L~~~~~~~G-----------i~i~~- 541 (884)
++++++.+++.+.. +++ |.+|+..++.+.+++|+ ++|.++++.+| |.+..
T Consensus 359 ~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~ 438 (771)
T 1u04_A 359 TNYSRKYPVILPYEVPEKFRKIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFL 438 (771)
T ss_dssp GGGSCCCCCCCCSBCCTHHHHCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHHCC------------------------
T ss_pred chhhCCCcceecccchhhhhcccccceEEEEeCCchHHHHHHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCc
Confidence 99999999977654 555 44444446688899999 88988775444 44443
Q ss_pred -----ceEEEecc---chhhhHHHHhh-h-cccCceEEEEEe-cCCCchhHHhhhhhccccCCCcccccccccccch---
Q psy11920 542 -----PQVIALQE---EQTLSYLTALK-S-MRSDTQFVVIIF-NAPRTDRYQAVKKYCCCERPIPSQVINSRTISRE--- 607 (884)
Q Consensus 542 -----P~~~~~~~---~~~~~~~~~l~-~-~~~~~~lvl~Il-p~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~--- 607 (884)
+.++..+. ++.+.+++.+. . .+.++++|||++ |.++.+.|+.||++| ++.|||||||..+|+.+.
T Consensus 439 ~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k 517 (771)
T 1u04_A 439 DFRGKEKVITEDLNSDKGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDK 517 (771)
T ss_dssp -----CEEEEECTTSHHHHHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEET
T ss_pred ccccCcceecccccchHHHHHHHHHHHHhccCCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCcccc
Confidence 22233321 12233444443 2 245679987777 555678999999986 799999999999998653
Q ss_pred ---hhh-hhHHhhhhhhcccccCcceeEEeeccceeEEEeeeeeecccCCCCCceEEEEecccCCchhhhhHHHHHhccc
Q psy11920 608 ---DKM-KSIVMKIALQINCKLGGSLWSVQIPYDCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTTYYSQAVIQRRGQ 683 (884)
Q Consensus 608 ---~~~-~~~~~nI~lkiN~KLGG~~w~v~~p~~~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~y~s~~~~Q~~~~ 683 (884)
+++ +++++||++||||||||+||.++.|.+++||||+||+|++.+++.++++|.|+|.|..+.+|++.+..|.+++
T Consensus 518 ~~~~~l~~sia~NIalqIn~KLGG~pW~L~~p~~~tmiIGiDV~H~~~~~~svs~~A~V~s~dg~~~~~~s~~~~~~~~E 597 (771)
T 1u04_A 518 YDRNRLDLFVRHNLLFQVLSKLGVKYYVLDYRFNYDYIIGIDVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGE 597 (771)
T ss_dssp TEEEEECHHHHHHHHHHHHHHTTCBCCEESCCCSSSEEEEEEEEEECCTTTCEEEEEEEEETTSCEEEEEEEECCCCSSS
T ss_pred ccccchhHHHHHHHHHHHHHHhCCcceeecCCCCCEEEEEEEEEcCCCCCCceEEEEEEECCCCCEEEEEEEEeecCCcc
Confidence 134 7899999999999999999999999999999999999986443336677788888888888876544455555
Q ss_pred chhhhhhhHHHHHHHHhhhc-CCCCCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeee
Q psy11920 684 EITDSIAQPFKQALDRFIQA-NSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKR 762 (884)
Q Consensus 684 ei~~~l~~~~~~aL~~f~~~-n~~lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Kr 762 (884)
++ + +..++.++|.+|++. ++.+|+||||||||+ |.++|+++|++||++. +|+++||+|+||
T Consensus 598 ~i-~-l~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~---------~p~itfIvV~Kr 659 (771)
T 1u04_A 598 SV-D-MNEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF---------DIEVVTMDVIKN 659 (771)
T ss_dssp SC-C-HHHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH---------TCEEEEEEEESC
T ss_pred EE-c-HHHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHHHHHhc---------CCCEEEEEEEec
Confidence 54 3 888999999999998 588999999999997 7889999999999765 579999999999
Q ss_pred cchhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEeeccc--cccccccee--EEEeccCCCC----ccchhhh
Q psy11920 763 INTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVR--QGTVTPSHY--IVLRNDNNVK----VDHLQRL 834 (884)
Q Consensus 763 h~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~--qGT~rPthY--~Vl~d~~~l~----~d~lq~L 834 (884)
||+|||. + ++|||||| + ||||+||.+. |||++|||| +|++|+++++ +|+||++
T Consensus 660 h~tRfF~----~-------~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~l 720 (771)
T 1u04_A 660 HPVRAFA----N-------MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLD 720 (771)
T ss_dssp CCCCBSS----C-------SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHH
T ss_pred Cceeeec----C-------CCCeeEEe-------C-CEEEEeccccCCCCCCCCEEEEEEEEecCCCCCCCCCHHHHHHH
Confidence 9999994 1 36899993 3 9999999754 999999999 9999999999 9999999
Q ss_pred hhhhheeeccCCc-eeeeCcchhhhHHHHHhhccccCCCCchhhhhccccC
Q psy11920 835 SYKLCHLYYNWPG-TIRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDKLFYL 884 (884)
Q Consensus 835 Ty~LC~ly~~~~~-~isvPaP~~YAhklA~~vg~~i~~~p~~~L~~~lfyL 884 (884)
||+||||||||++ ++|+||||||||++|+++|+++|.+++..+++.||||
T Consensus 721 ty~Lchlyyn~~~~svrvPAP~~YAhklA~lvgq~~~~~~~~~~~~~L~fl 771 (771)
T 1u04_A 721 IFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEWKIKEEFLAEGFLYFV 771 (771)
T ss_dssp HHHHHTCCTTCSSCCCCSCHHHHHHHHHHHHHHTTCCCCHHHHTTTCCTTC
T ss_pred HHHhhhhcccCCCCCccCCchHHHHHHHHHHHHhhhccChHHhhcCceeeC
Confidence 9999999999999 9999999999999999999999999999999999998
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=2.3e-113 Score=1023.89 Aligned_cols=661 Identities=17% Similarity=0.222 Sum_probs=518.7
Q ss_pred EEEEeeeeeeecCCceeEEEeeeCCC--CCchhhhhhHHhhHHhhhcccccccc-cceeeeeeecccccccccccccCCc
Q psy11920 128 VMVNYIDLSVKEGSGMYEYEVKFNPP--IDSRGIRNRLINSLNDLLGQYKTFDG-MNLFLPFKLSSDTVNTTCQTREGSD 204 (884)
Q Consensus 128 l~tN~f~l~~~~~~~iy~Y~V~~~P~--~~~~~~r~~ll~~~~~~~g~~~~fDG-~~L~s~~~L~~~~~~~~~~~~~g~~ 204 (884)
..-|.|++..+|...-| . .|.|. +...++..--+...- .-| ...|-. .-.|...+++.+. +.-...+|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 77 (706)
T 1yvu_A 5 ALLNLYRIEYRPKDTTF--T-VFKPTHEIQKEKLNKVRWRVFL-QTG-LPTFRREDEFWCAGKVEKDT--LYLTLSNGEI 77 (706)
T ss_dssp CEESEEEEEECCSSCEE--B-CCEESSCCCHHHHHHHHHHHHH-HHC-SCEEEETTEEEESSCCTTCC--CEEEECSSSC
T ss_pred hhhhhheeeeccCCcee--E-eecchHHHHHHhhhheeeEeee-ecC-Cccccccccceeccccccce--EEEEcCCCCE
Confidence 35688888887754332 1 24453 333333222111100 012 345555 5567777775443 3334456777
Q ss_pred eEEEEEEehh----HHHHhhhhHHHHHHHHHHHHHhhhcccccccCCCcccccc--ccceeecCcceeeeeccc-CceeE
Q psy11920 205 VQITIIFKRQ----RQFYENLMFYNILFRKIAFLLSMVQFKDCLYDPRSKLLIP--QYKLEVWPGFVTAIDEYE-GGLKL 277 (884)
Q Consensus 205 i~i~~~~~~~----~~~~~~iq~lNii~r~~l~~l~~~~iGR~ff~~~~~~~i~--~~~leiw~Gf~~Sir~~e-~~l~L 277 (884)
|+|+++++++ +++++|+|+||++||++ .|++++||||||+|..++.++ +|+||+||||.+||+++| ++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L 155 (706)
T 1yvu_A 78 VELKRVGEEEFRGFQNERECQELFRDFLTKT--KVKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLL 155 (706)
T ss_dssp EEEEECCCEECCCCSCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEE
T ss_pred EEEEEEEEeeccCCCCCHHHHHHHHHHHHHc--CChHhhhCccccCccccccccCCCCcEEEccCeEEEEEeccCCCeEE
Confidence 9999999999 99999999999998876 577779999999999999996 677999999999999998 99999
Q ss_pred EeeccceeeecchhhhHHHHHHHhhcCcHHHHHHHhhhheeEEEeecCcee--eeecc-ccccCccccccccCCC-cchh
Q psy11920 278 QIDTSCRVLRTSTCLDLIDELKEKFGGNFMERLSQALIGEIVLTRYNNQTY--RIDEI-DFKQTPMSTFTKRGEP-KSYV 353 (884)
Q Consensus 278 ~iDvs~k~~r~~tvld~~~~~~~~~~~~~~~~~~k~L~Gl~V~t~ynnkty--rI~~I-~~~~~p~~tF~~~dG~-iSv~ 353 (884)
|+|++|||+|++||+|+|.+ ++..+ ..+.+.|+|++| ||+|| +|+.+|.++|.. |. +|
T Consensus 156 ~~DvshKvlr~~Tvld~l~~-~~~~~-------------~~~~~~y~n~ty~~riddi~~~~~~P~~~f~~--g~~iS-- 217 (706)
T 1yvu_A 156 HLDLKFRIQPFETLQTLLER-NDFNP-------------KRIRVKPIGIDFVGRVQDVFKAKEKGEEFFRL--CMERS-- 217 (706)
T ss_dssp EEEEEEEEEESSCHHHHHHH-CCCCC-------------TTCEEEETTCCCCEEEEEEEESTTSCHHHHHH--HHHTC--
T ss_pred EEEeeeeecccchHHHHHHH-hhhcc-------------hhHHhhcccceeccccCcccccCCCcceEecC--CCCcc--
Confidence 99999999999999999988 43211 356789999999 99999 999999999973 55 89
Q ss_pred hhhhhhccee--------eccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhhHHHHhhhcccccc
Q psy11920 354 DYYREAYNIE--------IRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQVMKSIASFTRV 425 (884)
Q Consensus 354 dYyk~~Yni~--------i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d~~~mk~l~~~t~~ 425 (884)
||+++|++. .+++.+|+++.+. . . ..+++|+| ||+++||+|+|++ +|+++|++
T Consensus 218 -Yyk~~~~~~q~ll~~r~~~~~~~~~~v~~~-------~--~--~p~~lL~p-lc~~t~Ltd~q~~------~mik~t~~ 278 (706)
T 1yvu_A 218 -THKSSKKAWEELLKNRELREKAFLVVLEKG-------Y--T--YPATILKP-VLTYENLEDEERN------EVADIVRM 278 (706)
T ss_dssp -SSHHHHHHHHHHHHCHHHHHHCEEEEETTS-------C--E--EEGGGEEE-CCCCC------HH------HHTSTTSC
T ss_pred -eEecccCcchhhhhccccccCCceEEeccC-------C--C--CCceeecc-ccccCCCCHHHHH------HHHHHHcc
Confidence 999999775 3333444443221 1 1 02567777 9999999999984 58999999
Q ss_pred CCchhHHHHHHhhhccCCchhhhhhhhccccccccchhhhcceeeeeeeEeccCcc--ccCCCcccccccccCCCCceEE
Q psy11920 426 DPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARILPVEKIYMGNNF--VAPGSQEADWNRQVGTNPALTV 503 (884)
Q Consensus 426 ~P~~R~~~i~~~~~~l~~~~~~~~~L~~~Gl~i~~~~~~v~grvLp~p~I~~g~~~--~~~~~~~g~W~~~~r~~~~~~~ 503 (884)
+|++|++.|.++++.+ .++|+.|||+|+++|++++|||||+|+|.++++. ......++.|. ++ .+|+.+
T Consensus 279 ~P~~R~~~i~~~~~~~------~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~--~~-~~~~~~ 349 (706)
T 1yvu_A 279 EPGKRLNLIRYILRRY------VKALRDYGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLE--LC-RPFVKK 349 (706)
T ss_dssp CHHHHHHHHHHHHHHH------HHHHHTTTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHH--HC-CCCCSC
T ss_pred CHHHHHHHHHHHHHHH------HHHHHHcCCEECCceeecccEEcCCceeecCCCCcceeccCCccccc--cc-Cceecc
Confidence 9999999999999853 4689999999999999999999999999854322 22123334454 34 467788
Q ss_pred Eeccc---EEEEEEecccccchhhhhhcccCCceeeeeeeCceEEEeccchhhhHHHHhh-hc--ccCceEEEEEecCC-
Q psy11920 504 VNFDQ---WVLIHIRRDQRNADNFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK-SM--RSDTQFVVIIFNAP- 576 (884)
Q Consensus 504 ~~l~~---W~vv~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~P~~~~~~~~~~~~~~~~l~-~~--~~~~~lvl~Ilp~~- 576 (884)
+.+++ |++++..++. .+++|+++|.++|+.+||.++.|.......++.+.+++.+. .+ ..++++||||+|++
T Consensus 350 ~~l~~~~lW~~i~~~~~~-~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~qlvlvIlp~~~ 428 (706)
T 1yvu_A 350 DVLSVEIISVSVYKKLEW-RKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYP 428 (706)
T ss_dssp SEEEEEEEEEEC-----C-HHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTTTSSCSEEEEEEC---
T ss_pred cccccceEEEEEecchhH-HHHHHHHHHHHHHHHcCceecCCccccccchhHHHHHHHHHHHhcccCCCcEEEEEECCcc
Confidence 88899 9777765543 78999999999999999999988554444567788888877 33 56799999999998
Q ss_pred ------CchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEEeec-cceeEEEeeeeeec
Q psy11920 577 ------RTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIP-YDCAMVIGIDVYHE 649 (884)
Q Consensus 577 ------~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p-~~~tMivGiDV~H~ 649 (884)
+.+.|+.||++ |.+.|||||||..+|+.+. +..++++||++||||||||+||.++.| ..+|||||+||+|+
T Consensus 429 ~~~~~~~~~~Y~~IK~~-~~~~GI~TQcv~~~tl~~~-~~~q~~~NI~lkiN~KLGG~nw~L~~~~~~~tmiIGiDVsH~ 506 (706)
T 1yvu_A 429 KVDPYKSFLLYDFVKRE-LLKKMIPSQVILNRTLKNE-NLKFVLLNVAEQVLAKTGNIPYKLKEIEGKVDAFVGIDISRI 506 (706)
T ss_dssp -------CHHHHHHHHH-HHHTTCCCEEEEHHHHHHS-CHHHHHHHHHHHHHHHTTCCSCEESCCTTCCSEEEEECEEEC
T ss_pred ccccccCccHHHHHHHH-HhcCCCceEEEehhhcccc-chHHHHHHHHHHHHHHhCCeeeeeccCCCCceEEEEEEEecc
Confidence 78899999998 5599999999999999764 357999999999999999999999987 46899999999999
Q ss_pred ccCCCCCceEEEEecccCC--chhhhhHHHHHhcccchhhhhhhHHHHHHHHhhhcCCCCCceEEEeeccCCCCcccccc
Q psy11920 650 GVGSQGQNIVGLVASTNKD--FTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVS 727 (884)
Q Consensus 650 ~~~~~~~Sv~g~VaS~d~~--~t~y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDGVseGq~~~v~ 727 (884)
+.++..+|++|+|||+|.. +++|.+....| .++|++++ ++..+|+.|.+.++.+|++||||||||||
T Consensus 507 ~~~~~~pSv~g~vas~d~~g~~~~~~~~~~~q-~~~ei~~~---l~~~~l~~~~~~~~~~P~rIIiyRDGVse------- 575 (706)
T 1yvu_A 507 TRDGKTVNAVAFTKIFNSKGELVRYYLTSYPA-FGEKLTEK---AIGDVFSLLEKLGFKKGSKIVVHRDGRLY------- 575 (706)
T ss_dssp CCSSSCCCEEEEEEEECTTSCEEEEEEEEECS-CTTHHHHH---HHHHHHHHHHHTTCCTTCEEEEEESSCCC-------
T ss_pred CCCCCCceEEEEEEEEcCCCCEEEEEEEeccc-ccchHHHH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCc-------
Confidence 7554348999999999843 67887765433 47788765 45666778888888999999999999999
Q ss_pred eeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEee-c
Q psy11920 728 RVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQ-H 806 (884)
Q Consensus 728 ~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq-~ 806 (884)
++|+++|++||++. .|++|||||+||||+|||+. .||+||||||. + .+||||++| .
T Consensus 576 ~~El~~Ik~A~~~~---------~pkit~IvV~Krh~tRfF~~---------~np~pGTvVD~----~-~~~ffL~ss~~ 632 (706)
T 1yvu_A 576 RDEVAAFKKYGELY---------GYSLELLEIIKRNNPRFFSN---------EKFIKGYFYKL----S-EDSVILATYNQ 632 (706)
T ss_dssp HHHHHHHHHHHHHH---------TCEEEEEEEECSSCCCEECS---------CSCCTTEEEEB----S-SSEEEECCSCC
T ss_pred HHHHHHHHHHHHHc---------CCcEEEEEEEeccCeeEECC---------CCCCCeEEEEc----C-CCeEEEEecCC
Confidence 68999999999764 68999999999999999992 26999999994 3 367777765 4
Q ss_pred ccccccccceeEEEeccCCCCccchhhhhhhhheeeccCCceeeeCcchhhhHHHHHhhccccCCCCchhhhhccccC
Q psy11920 807 VRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDKLFYL 884 (884)
Q Consensus 807 ~~qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~~~~~~isvPaP~~YAhklA~~vg~~i~~~p~~~L~~~lfyL 884 (884)
+.|||+|||||+|+++|. ++|+||+|||+|||+|+||+++||+||||||||++|++++++++ |+..+.|.||||
T Consensus 633 ~~qGT~rPthY~vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~--p~~~~~~~lfyl 706 (706)
T 1yvu_A 633 VYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE--PIKKEGDIMYWL 706 (706)
T ss_dssp CSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSS--CCEEEESCCTTC
T ss_pred ccCCCCCCEEEEEEeCCC--CHHHHHHHHHHHHHhccccCCCcccChHHHHHHHHHHHHHhcCC--ccccccCccccC
Confidence 599999999999555554 89999999999999999999999999999999999999999987 999999999998
No 5
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1.5e-97 Score=872.22 Aligned_cols=658 Identities=15% Similarity=0.156 Sum_probs=513.2
Q ss_pred ceEEEEEeeeeeee--cCCceeEEEeeeCCCCCchhhhhhHHhhHHhhhcccccccccceeeeeeeccc-cccccccccc
Q psy11920 125 PIKVMVNYIDLSVK--EGSGMYEYEVKFNPPIDSRGIRNRLINSLNDLLGQYKTFDGMNLFLPFKLSSD-TVNTTCQTRE 201 (884)
Q Consensus 125 ~v~l~tN~f~l~~~--~~~~iy~Y~V~~~P~~~~~~~r~~ll~~~~~~~g~~~~fDG~~L~s~~~L~~~-~~~~~~~~~~ 201 (884)
.+.|.-|-|.|+-. ++...|.|+|.++|+.+.....++|-.-..++ |...+-=|+.|.+-++ |+. ..|=......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRA-GGVTVRMGDGLASWSP-PEVLVLEGTLARMG 83 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHHHHHHHHHHT-CSSEEEETTEEEESSC-TTTSCCEEEEECSS
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHHHHHHHHHHh-CCeEEeecCceecccC-chhhhccchhcccc
Confidence 47899999999863 46889999999999888777766665544443 4333444677776665 332 1111111111
Q ss_pred CCc---eEEEEEEehhHHHHhhhhHHHHHHHHHHHHHhhhcc------cccccCCCccccccccceeecCcceeeeeccc
Q psy11920 202 GSD---VQITIIFKRQRQFYENLMFYNILFRKIAFLLSMVQF------KDCLYDPRSKLLIPQYKLEVWPGFVTAIDEYE 272 (884)
Q Consensus 202 g~~---i~i~~~~~~~~~~~~~iq~lNii~r~~l~~l~~~~i------GR~ff~~~~~~~i~~~~leiw~Gf~~Sir~~e 272 (884)
+.. +.-.-.+.+++.++..-++|+.+-|+.+.. ++.+. |.-.+..+. ..+.|+|+.+|+...|.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~v~~~~ 159 (685)
T 3ho1_A 84 QTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQE-RLRRLEGVWVEGLAVYRREH---ARGPGWRVLGGAVLDLWVSD 159 (685)
T ss_dssp CEEEEEEEEEEECCCCTTSHHHHHHHHHHHHHHHHH-HHHTCSSSEEETTEEEEEEE---EEETTEEEEEEEEEEEEECS
T ss_pred CCcceeeeecccccCCCCChHHHHHHHHHHHHHHHH-HHHhhhceEEccEEEEeecC---CCCCceEEecceEEEEEECC
Confidence 221 333445678889999999999999998862 22222 222233322 34789999999999999885
Q ss_pred -CceeEEeeccceeeecchhhhHHHHHHHhhcCcHHHHHHHhhhheeEEEeecCceeeeeccccccCccccccccCCCcc
Q psy11920 273 -GGLKLQIDTSCRVLRTSTCLDLIDELKEKFGGNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEPKS 351 (884)
Q Consensus 273 -~~l~L~iDvs~k~~r~~tvld~~~~~~~~~~~~~~~~~~k~L~Gl~V~t~ynnktyrI~~I~~~~~p~~tF~~~dG~iS 351 (884)
++++|.+|+.|+|++++|+.+++++.+ . |. .+|.|.||.++|.|++|+ +++|.+.|... .||
T Consensus 160 ~~~~~l~vd~~~r~~~~~~~~~~l~~~~------------~-~~-~~v~~~y~~~~~~~~~~~-~~~p~~~~l~~--~~s 222 (685)
T 3ho1_A 160 SGAFLLEVDPAYRILCEMSLEAWLAQGH------------P-LP-KRVRNAYDRRTWELLRLG-EEDPKELPLPG--GLS 222 (685)
T ss_dssp SSEEEEEEEEEEEEEECSCHHHHHHHSC------------C-CC-SEEEESSSCCEECCCEEE-CCCTTCC--------C
T ss_pred CCcEEEEEeeheeecChhhHHHHHHhCC------------C-cc-HHHhhhcccceEEEeecc-cCCchheecCC--Ccc
Confidence 999999999999999999999987643 1 44 689999999999999999 89999999754 499
Q ss_pred hhhhhhhhcceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhhHHHHhhhccccccCCchhH
Q psy11920 352 YVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQVMKSIASFTRVDPNQKL 431 (884)
Q Consensus 352 v~dYyk~~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d~~~mk~l~~~t~~~P~~R~ 431 (884)
++|||+++|.+ ++.+||+||...+.+. .+.. .....++|.|||| |+||++.+++ .+|+++|++|+
T Consensus 223 ~~~y~~~k~~~--~~~~~~~vv~~~~~~~-~~~~--i~~~~~~l~p~l~-m~~l~~~~~~---------~~trlsP~~R~ 287 (685)
T 3ho1_A 223 LLDYHASKGRL--QGREGGRVAWVADPKD-PRKP--IPHLTGLLVPVLT-LEDLHEEEGS---------LALSLPWEERR 287 (685)
T ss_dssp STTTTTTTSTT--TTSCCCSEEEECSCC----CC--EEEETTSEEEECC-TTTTSSCSSC---------CCCCCCHHHHH
T ss_pred HHHHHhhcccc--cccCCceEEEEecccc-CCCc--ceeeeeeechHhH-HHHHhhhhhh---------ccccCCHHHHH
Confidence 99999999998 8999999999876542 1221 1125689999999 9999987664 79999999999
Q ss_pred HHHHHhhhccCCchhhhhhhhccccccccchhhhcceeeeeeeEeccCccccCCCcccccccccCCCCceEEEecccEEE
Q psy11920 432 QAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARILPVEKIYMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVL 511 (884)
Q Consensus 432 ~~i~~~~~~l~~~~~~~~~L~~~Gl~i~~~~~~v~grvLp~p~I~~g~~~~~~~~~~g~W~~~~r~~~~~~~~~l~~W~v 511 (884)
+.+.+|++. .++.|||+ +++|++++||+||||+| +++.... . .|. +++.+|+.+... .|++
T Consensus 288 ~~l~~~~~~---------i~~~~Gl~-~~~~i~v~gRvLppp~I-~g~~~~~-~----~~d--~~~~~~~~~~~~-~~ai 348 (685)
T 3ho1_A 288 RRTREIASW---------IGRRLGLG-TPEAVRAQAYRLSIPKL-MGRRAVS-K----PAD--ALRVGFYRAQET-ALAL 348 (685)
T ss_dssp HHHHHHHHH---------HHHTTCSC-CCEEEEEEEEECCCCCE-ESSSBCS-S----GGG--HHHHCCSSCCCE-EEEE
T ss_pred HHHHHHHHH---------HHHhcCCC-CCCcceEEEEEcCHHHh-cCCCCcC-C----chh--hccCcceeccCc-eEEE
Confidence 999999875 56789999 99999999999999999 8765432 1 121 223345554443 7999
Q ss_pred EEEecccccchhhhhhcccCCceeeeeeeCceEEEeccchhhhHHHHhh-hcccCceEEEEEecCCCchhHHhhhhhccc
Q psy11920 512 IHIRRDQRNADNFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK-SMRSDTQFVVIIFNAPRTDRYQAVKKYCCC 590 (884)
Q Consensus 512 v~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~P~~~~~~~~~~~~~~~~l~-~~~~~~~lvl~Ilp~~~~~~Y~~IK~~~~~ 590 (884)
++..++.+.+++|+++|.++|+.+||+|+.|......+++. +|.++++ ..+.++|+||||+|+++++.|+.||++ |+
T Consensus 349 l~l~~~~~~~~~f~~~L~~va~~~G~~i~~~~~~~~~~d~~-~~~~~l~~~~~~~~qlvvvIlp~~~~~~y~~IKk~-~~ 426 (685)
T 3ho1_A 349 LRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGL-AFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKAL-LL 426 (685)
T ss_dssp EECSSCCSCCHHHHHHHHHHHHSSSSCEEEEECCCCGGGTH-HHHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHH-HH
T ss_pred EeccCchHHHHHHHHHHHHHHHhCCcEeccceeecCCCchH-HHHHHHHHhhhcCCCEEEEEECCCCccHHHHHHHH-Hh
Confidence 99877678899999999999999999999876655544443 6778888 566789999999999999999999997 58
Q ss_pred cCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEEeeccceeEEEeeeeeecccCCCCCceEEEEec--ccCC
Q psy11920 591 ERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPYDCAMVIGIDVYHEGVGSQGQNIVGLVAS--TNKD 668 (884)
Q Consensus 591 ~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p~~~tMivGiDV~H~~~~~~~~Sv~g~VaS--~d~~ 668 (884)
++|||||||. +++.+ +.+++++||++||||||||+||.|+.|.+++||||+||+|++. .+++|++++ .|..
T Consensus 427 ~~GIpTQcV~-~tl~k--~~~~ia~NIaLkINaKLGG~pW~L~~P~~~tmiIGiDVsH~~~----~~~~~~aav~~~dg~ 499 (685)
T 3ho1_A 427 REGLPSQILN-VPLRE--EERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRES----FRFGGAACAVGGDGG 499 (685)
T ss_dssp HTTCCEEEEE-SSCCT--TCHHHHHHHHHHHHHHHTCCCCEECSCCSCSEEEEEEEEETTE----EEEEEEEEEECC--C
T ss_pred cCCCccEEEe-ccccc--ccHhHHHHHHHHHHHHhCCeeEEecCCCCCeEEEEEEEEcCCC----CccceEEEEEECCCC
Confidence 9999999999 77765 3578999999999999999999999999999999999999862 445554444 4555
Q ss_pred chhhhhHHHHHhcccchhhhhhhHHHHHHHHhhhcCCCCCceEEEeeccC-CCCcccccceeehhhhHHHHHHHHhcCCC
Q psy11920 669 FTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGV-SDGQLDSVSRVEIDQYQQIVDTIMTTLPS 747 (884)
Q Consensus 669 ~t~y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDGV-seGq~~~v~~~Ev~~i~~a~~~~~~~~~~ 747 (884)
..+|. .+..|...++.+++|..+|.++|+.|++.|+.+|+||||||||| +|| |+++|++||+++
T Consensus 500 ~~~~~-~~~~Q~~e~l~~~~L~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~--------E~~~I~eAl~~~------ 564 (685)
T 3ho1_A 500 HLLWT-LPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQD--------EFALALEALARE------ 564 (685)
T ss_dssp CCEEE-CCCCCCSCCCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSG--------GGHHHHHHHHHT------
T ss_pred EEEeE-EEEccCCcEecHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHH--------HHHHHHHHHHhc------
Confidence 55653 34455443334579999999999999999999999999999999 565 677888999876
Q ss_pred CCCCcceeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEee-cccccccccceeEEEeccCCC
Q psy11920 748 CSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQ-HVRQGTVTPSHYIVLRNDNNV 826 (884)
Q Consensus 748 ~~~~pklt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq-~~~qGT~rPthY~Vl~d~~~l 826 (884)
.+++|||||+||||+|||+. + .+|.+||+|+ ++++||||+++ ++.|||++||||+ +|++++
T Consensus 565 ---~~~~t~IvVqKRh~tRfF~~----n----~pp~~Gt~v~-----~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~ 626 (685)
T 3ho1_A 565 ---GIAYDLVSVRKSGGGRVYPV----Q----GRLADGLYVP-----LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDT 626 (685)
T ss_dssp ---TCEEEEEEEESSCCCCEEES----S----SCCCSSEEEE-----CSTTEEEEECCCCCSSSCCCCEEEE--EEEECS
T ss_pred ---CCCEEEEEEEecCCceEecC----C----CCCCCeEEEe-----CCCCEEEEEecCCCCccCCceEEEE--ECCCCC
Confidence 46899999999999999992 1 3566676664 34566666554 5789999999997 999999
Q ss_pred CccchhhhhhhhheeeccCC-ceeeeCcchhhhHHHH---HhhccccCCCCchhhhhccccC
Q psy11920 827 KVDHLQRLSYKLCHLYYNWP-GTIRVPAVCQYAHRIA---YLTGMHLQRLPSDVLSDKLFYL 884 (884)
Q Consensus 827 ~~d~lq~LTy~LC~ly~~~~-~~isvPaP~~YAhklA---~~vg~~i~~~p~~~L~~~lfyL 884 (884)
++|+||++||+|||||+||+ +++||||||||||++| .++|++ .|+.-|+++||||
T Consensus 627 s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~YAhklAk~~~r~g~~---~~~~~~~~kl~fl 685 (685)
T 3ho1_A 627 PLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIR---HLKEVDREKLFFV 685 (685)
T ss_dssp CHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHHHHHHTTCS---CCCSSCTTCCTTC
T ss_pred CHHHHHHHHHHHHHhhccCCCCCCCcChHHHHHHHHHHHHHHhccc---cccccchhheeeC
Confidence 99999999999999999998 9999999999999999 556664 7899999999997
No 6
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=3.7e-96 Score=836.21 Aligned_cols=383 Identities=22% Similarity=0.359 Sum_probs=281.3
Q ss_pred cCCCCceE-EEecccEEEEEEe--cccccchhhhhhcccCCceeeeeeeCce---EEEeccchhhhHHHHhh-hc-ccCc
Q psy11920 495 VGTNPALT-VVNFDQWVLIHIR--RDQRNADNFLNCLNRNSNAIGIRVKKPQ---VIALQEEQTLSYLTALK-SM-RSDT 566 (884)
Q Consensus 495 ~r~~~~~~-~~~l~~W~vv~~~--~~~~~~~~f~~~L~~~~~~~Gi~i~~P~---~~~~~~~~~~~~~~~l~-~~-~~~~ 566 (884)
+++++|+. ++++++|++|++. ++.+.+++|++.|.+.++.+||.+..|. .....++..+.| .++ .. ..++
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELMSSH 79 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHHHTC
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH--HHHHhhccCCC
Confidence 57889999 7889999999994 4677899999999999999999998874 334433443444 455 22 3589
Q ss_pred eEEEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEEeecc-----ceeEE
Q psy11920 567 QFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPY-----DCAMV 641 (884)
Q Consensus 567 ~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p~-----~~tMi 641 (884)
||||||+|+++.+.|+.||++||++.|||||||..+|+.+.+..+++++||+|||||||||+||.|+.|. .+|||
T Consensus 80 ~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~~~~~~~~~tmi 159 (437)
T 2yhb_A 80 QFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKTMV 159 (437)
T ss_dssp SEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSCCHHHHTTCEEE
T ss_pred cEEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccccccccCCCCEEE
Confidence 9999999999888999999999999999999999999977644355999999999999999999998643 58999
Q ss_pred Eeeeeeecc---cC---CCCCceEEEEecccCCchhhhhHHHHHh-cccchhhhhhhHHHHHHHHhhh---cCCCCCceE
Q psy11920 642 IGIDVYHEG---VG---SQGQNIVGLVASTNKDFTTYYSQAVIQR-RGQEITDSIAQPFKQALDRFIQ---ANSVPPKQI 711 (884)
Q Consensus 642 vGiDV~H~~---~~---~~~~Sv~g~VaS~d~~~t~y~s~~~~Q~-~~~ei~~~l~~~~~~aL~~f~~---~n~~lP~~I 711 (884)
||+||+|++ ++ ...||++|||||+|.++++|++.+++|. .++|++++|++||.++|+.|++ .++.+|++|
T Consensus 160 iG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rI 239 (437)
T 2yhb_A 160 VGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENI 239 (437)
T ss_dssp EEEEECCCSCCCTTCCSTTSCEEEEEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCGGGTTCCCSEE
T ss_pred EEEEEeccccccCCCcCCCCCEEEEEEEecCCCcCeeeeEEEEcCCcchhHHHHHHHHHHHHHHHHHhhhhhcCCCCceE
Confidence 999999998 54 1239999999999999999999999999 9999999999999999999999 889999999
Q ss_pred EEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCC-CcceeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeee
Q psy11920 712 FIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSY-APKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDH 790 (884)
Q Consensus 712 IiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~-~pklt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~ 790 (884)
||||||||||||.+|+++|+++|++||+++ .+ ++ +|+||||||+||||+|||+.+..+.+++.+|||||||||+
T Consensus 240 iiyRDGVseGqf~~V~~~El~~i~~a~~~~---~~--~~~~p~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~ 314 (437)
T 2yhb_A 240 LIFRDGVSEGQFQMVIKDELPLVRAACKLV---YP--AGKLPRITLIVSVKRHQTRFFPTDPKHIHFKSKSPKEGTVVDR 314 (437)
T ss_dssp EEEEESCCTTTHHHHHHHTHHHHHHHHHHH---SC--TTCCCEEEEEEEC------------------------------
T ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHh---hc--ccCCCCEEEEEEEecccceeccCCccccccccCCCCCceEecc
Confidence 999999999999999999999999999999 44 56 7999999999999999999652222236789999999999
Q ss_pred eecccccceEEEEeecccccccccceeEEEeccC------CCCccchhhhhhhhheeeccCCceeeeCcchhhhHHHHHh
Q psy11920 791 TVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDN------NVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYL 864 (884)
Q Consensus 791 ~it~p~~~dFyLvSq~~~qGT~rPthY~Vl~d~~------~l~~d~lq~LTy~LC~ly~~~~~~isvPaP~~YAhklA~~ 864 (884)
+||+|.+|||||+||.++|||+|||||+||+||+ ++++|+||+|||+|||+|+||+++|||||||||||++|+|
T Consensus 315 ~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVsipaP~yYAh~~a~R 394 (437)
T 2yhb_A 315 GVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDR 394 (437)
T ss_dssp -------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred cccCCCCceEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred hccccC-----------------------CCCchhhhhccccC
Q psy11920 865 TGMHLQ-----------------------RLPSDVLSDKLFYL 884 (884)
Q Consensus 865 vg~~i~-----------------------~~p~~~L~~~lfyL 884 (884)
++++++ .+||.+|+++||||
T Consensus 395 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 395 ARIHQKELFDALDENDSVKTDDFARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp HHHHCHHHHHHHHHTSCCCHHHHHHHHHHTSCCGGGTTSCTTC
T ss_pred HHHHhhhhccCCCCCCccCCCCccccccccccCHhhcCCceeC
Confidence 877765 47999999999997
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=3.4e-79 Score=688.09 Aligned_cols=334 Identities=21% Similarity=0.355 Sum_probs=281.6
Q ss_pred cCCCCceE-EEecccEEEEEEe--cccccchhhhhhcccCCceeeeeeeCce---EEEeccchhhhHHHHhh-hc-ccCc
Q psy11920 495 VGTNPALT-VVNFDQWVLIHIR--RDQRNADNFLNCLNRNSNAIGIRVKKPQ---VIALQEEQTLSYLTALK-SM-RSDT 566 (884)
Q Consensus 495 ~r~~~~~~-~~~l~~W~vv~~~--~~~~~~~~f~~~L~~~~~~~Gi~i~~P~---~~~~~~~~~~~~~~~l~-~~-~~~~ 566 (884)
+++++|+. ++++++|++|++. ++.+.+++|++.|.+.++.+||.+..|. .....++..+.| .++ .. ..++
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELMSSH 79 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHHHTC
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHh--HHHHhhccCCC
Confidence 57889999 7889999999994 4677899999999999999999998874 334433443444 555 32 3589
Q ss_pred eEEEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEEeecc-----ceeEE
Q psy11920 567 QFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPY-----DCAMV 641 (884)
Q Consensus 567 ~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p~-----~~tMi 641 (884)
||||||+|+++.+.|+.||++||++.|||||||..+|+.+.+..+++++||+|||||||||+||.|+.|. .+|||
T Consensus 80 ~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~~~~~~~~~tmi 159 (388)
T 2yha_A 80 QFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKTMV 159 (388)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSCCHHHHTSCEEE
T ss_pred eEEEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccccccccCCCCEEE
Confidence 9999999999888999999999999999999999999977643355999999999999999999998643 58999
Q ss_pred Eeeeeeecc---cC--C-CCCceEEEEecccCCchhhhhHHHHHh-cccchhhhhhhHHHHHHHHhhh---cCCCCCceE
Q psy11920 642 IGIDVYHEG---VG--S-QGQNIVGLVASTNKDFTTYYSQAVIQR-RGQEITDSIAQPFKQALDRFIQ---ANSVPPKQI 711 (884)
Q Consensus 642 vGiDV~H~~---~~--~-~~~Sv~g~VaS~d~~~t~y~s~~~~Q~-~~~ei~~~l~~~~~~aL~~f~~---~n~~lP~~I 711 (884)
||+||+|++ ++ . ..||++|||||+|.++++|++.+++|. .++|++++|++|+.++|+.|++ .|+.+|+||
T Consensus 160 iG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rI 239 (388)
T 2yha_A 160 VGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENI 239 (388)
T ss_dssp EEEEEECSCCCSSSSCCTTSCEEEEEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHHSGGGTTCCCSEE
T ss_pred EEEEEecccccCCCCcCCCCCEEEEEEEEcCCCCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHhhhhcCCCCceE
Confidence 999999998 55 2 239999999999999999999999999 9999999999999999999999 889999999
Q ss_pred EEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCC-CcceeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeee
Q psy11920 712 FIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSY-APKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDH 790 (884)
Q Consensus 712 IiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~-~pklt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~ 790 (884)
||||||||||||++|+++|+++|++||+++ .. ++ .|+||||||+||
T Consensus 240 iiyRDGVseGQf~~V~~~El~~i~~a~~~~---~~--~~~~P~it~Ivv~Kr---------------------------- 286 (388)
T 2yha_A 240 LIFRDGVSEGQFQMVIKDELPLVRAACKLV---YP--AGKLPRITLIVSVKG---------------------------- 286 (388)
T ss_dssp EEEEESCCGGGHHHHHHHTHHHHHHHHHHH---SC--TTCCCEEEEEEEC------------------------------
T ss_pred EEEecCcChhHHHHHHHHHHHHHHHHHHHh---hc--ccCCCcEEEEEeccc----------------------------
Confidence 999999999999999999999999999999 44 56 899999999999
Q ss_pred eecccccceEEEEeecccccccccceeEEEeccC------CCCccchhhhhhhhheeeccCCceeeeCcchhhhHHHHHh
Q psy11920 791 TVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDN------NVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYL 864 (884)
Q Consensus 791 ~it~p~~~dFyLvSq~~~qGT~rPthY~Vl~d~~------~l~~d~lq~LTy~LC~ly~~~~~~isvPaP~~YAhklA~~ 864 (884)
+|||||+||+||+ ++++|+||+|||+|||+|+||+++|||||||||||++|+|
T Consensus 287 ---------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~yYAh~~a~R 345 (388)
T 2yha_A 287 ---------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDR 345 (388)
T ss_dssp -------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHHHHHHHHHHH
T ss_pred ---------------------cCCceEEEEeCCccccccCCCCHHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHHHHHH
Confidence 9999999999998 9999999999999999999999999999999999999998
Q ss_pred hccccC-----------------------CCCchhhhhccccC
Q psy11920 865 TGMHLQ-----------------------RLPSDVLSDKLFYL 884 (884)
Q Consensus 865 vg~~i~-----------------------~~p~~~L~~~lfyL 884 (884)
++++++ .+||.+|+|+||||
T Consensus 346 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 346 ARIHQKELFDALDENDSVKTDDFARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp HHHHCHHHHHHHTTCSCCCHHHHHHHHHHTCCCGGGTTSCTTC
T ss_pred HHHHhhhhccCCCcccccCCCcccccccccccCHHhcCCceeC
Confidence 877765 57999999999997
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=1.9e-62 Score=558.96 Aligned_cols=384 Identities=13% Similarity=0.115 Sum_probs=275.8
Q ss_pred eeeeeeEecc--CccccCCCcccccccccCCCCceEEEec--ccEEEEEEecccccchhhhhhcccCCceeeeeeeCceE
Q psy11920 469 ILPVEKIYMG--NNFVAPGSQEADWNRQVGTNPALTVVNF--DQWVLIHIRRDQRNADNFLNCLNRNSNAIGIRVKKPQV 544 (884)
Q Consensus 469 vLp~p~I~~g--~~~~~~~~~~g~W~~~~r~~~~~~~~~l--~~W~vv~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~P~~ 544 (884)
.|..|.+.|+ ++....-...++=.+.++..+.++.... .+|+||+++++.+.++.|.+.+... ..+++.+..|.
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~gl~~~gpy~~~~~~~~~w~vI~~~~~~~~l~~l~~~~~~~-~g~~f~~~~~~- 82 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKGLRNYGPYEVPSLKYNQIALIHNNQFSSLINQLKSQISSK-IDEVWHIHNIN- 82 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHHHHHHCCSBCCCCSSSEEEEEESCTTCHHHHHHHHHHHHH-HHHTTCCCSCE-
T ss_pred ccCCCcceeeccCCCcccccccCCHHHHHHhcCCCccCCCCCCEEEEEECcccHHHHHHHHHhhhhc-CCCceeecCCc-
Confidence 3556667777 4332100011222223555555555444 7999999998776444444443322 12556665553
Q ss_pred EEeccchhhhHHHHhh-hcccCceEEEEEe--------cCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHh
Q psy11920 545 IALQEEQTLSYLTALK-SMRSDTQFVVIIF--------NAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVM 615 (884)
Q Consensus 545 ~~~~~~~~~~~~~~l~-~~~~~~~lvl~Il--------p~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~ 615 (884)
++.+.|.++++ .+..++++||||+ |+++++.|+ +|+ +++++|||||||..+|+.+ ++.+++++
T Consensus 83 -----~~~~~y~~~i~~~l~~~~~lvlvilp~~~~~~~~~~~~~~y~-~K~-~~~~~gvptQ~I~~~tl~~-~~~~~~~~ 154 (427)
T 2w42_A 83 -----ISEFIYDSPHFDSIKSQVDNAIDTGVDGIMLVLPEYNTPLYY-KLK-SYLINSIPSQFMRYDILSN-RNLTFYVD 154 (427)
T ss_dssp -----EEEEECSSSSHHHHHHHHHHHHHHCCSEEEEEESSCCHHHHH-HHH-HHHHTTSCEEEEEGGGCCT-TTHHHHHH
T ss_pred -----CChHHHHHHHHHHhcCCCCEEEEEEEccccccCCCCCcchHH-HHH-HHhCCCcCcEEEEhhhccc-ccchhHHH
Confidence 22334555555 4445789999999 666655665 776 6789999999999999984 35688999
Q ss_pred hhhhhcccccCcceeEEee--ccceeEEEeeeeeecccCCCCCceEEE--EecccCCchhhhhHHHHHhcccchhhhhhh
Q psy11920 616 KIALQINCKLGGSLWSVQI--PYDCAMVIGIDVYHEGVGSQGQNIVGL--VASTNKDFTTYYSQAVIQRRGQEITDSIAQ 691 (884)
Q Consensus 616 nI~lkiN~KLGG~~w~v~~--p~~~tMivGiDV~H~~~~~~~~Sv~g~--VaS~d~~~t~y~s~~~~Q~~~~ei~~~l~~ 691 (884)
||++||||||||+||.|+. |.+++||||+||+|++.+ +++|+ |++.|+.+..+ .+..|.+++|++++|+.
T Consensus 155 nIalqi~~KlGG~pW~l~~~~~~~~~miiGidv~h~~~~----~v~g~a~v~~~~g~~~~~--~~~~~~~~~E~~~~l~~ 228 (427)
T 2w42_A 155 NLLVQFVSKLGGKPWILNVDPEKGSDIIIGTGATRIDNV----NLFCFAMVFKKDGTMLWN--EISPIVTSSEYLTYLKS 228 (427)
T ss_dssp HHHHHHHHHTTCBCCEECCCTTSSCSEEEEEEEEESSSS----EEEEEEEEECTTSCEEEE--EECCCEEGGGHHHHHHH
T ss_pred HHHHHHHHHhCCcceecccCCCCCCeEEEEEEEEEcCCC----cEEEEEEEEcCCCCEEEE--EEEecCChhHHHHHHHH
Confidence 9999999999999999997 778999999999998754 56776 44555554323 22335578899999999
Q ss_pred HHHHHHHHhhh-cCCCCCc--eEEEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecc-hhh
Q psy11920 692 PFKQALDRFIQ-ANSVPPK--QIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRIN-TKI 767 (884)
Q Consensus 692 ~~~~aL~~f~~-~n~~lP~--~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~-~Rf 767 (884)
+|.++|+.|++ .|+.+|+ ||||| ||+..+.++|+++|++||+++..++ ..+++|+|+||+|+|||| .|+
T Consensus 229 ~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~~~~~-~~~~~~~l~~IvV~Kr~~~~r~ 301 (427)
T 2w42_A 229 TIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEELKKQE-MVSRDVKYAILHLNETHPFWVM 301 (427)
T ss_dssp HHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHHHHTT-SSCTTCEEEEEEEEECCCEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHHHHhcccc-ccCCCCCEEEEEEEccccceee
Confidence 99999999999 9999998 66887 9999999999999999999972100 014689999999999999 888
Q ss_pred hhhhccCCCCCCCCCCCCceeeeeecccccceEEEEeec------ccccccccceeEEEec----cCCC-Cccchhhhhh
Q psy11920 768 FQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQH------VRQGTVTPSHYIVLRN----DNNV-KVDHLQRLSY 836 (884)
Q Consensus 768 f~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~------~~qGT~rPthY~Vl~d----~~~l-~~d~lq~LTy 836 (884)
|.. . ..+||+||||||. +.+++++|++.+|. +.+|+. ||||+|+|| ++++ ++|+||++||
T Consensus 302 f~~----~--~~~nP~~GTvVd~--~~~~~l~~~~g~q~~~~~~~~~~~~~-Pt~y~vi~d~~~~~~~~~~~d~lq~lty 372 (427)
T 2w42_A 302 GDP----N--NRFHPYEGTKVKL--SSKRYLLTLLQPYLKRNGLEMVTPIK-PLSVEIVSDNWTSEEYYHNVHEILDEIY 372 (427)
T ss_dssp C--------------CCSEEEES--SSSEEEEEEEC---------CEEEEE-EEEEEEEEECCCTTTHHHHHHHHHHHHH
T ss_pred ecC----C--CCCCCCCceEEEc--CCCeEEEEEEeeeccccccccccCCC-CEEEEEEecCCcCcccCCCHHHHHHHHH
Confidence 862 1 1359999999997 46677777777776 444344 999999995 3444 5899999999
Q ss_pred hhheeeccCCceeeeCcchhhhHHHHHhhccccCCCC-------chhhhhccccC
Q psy11920 837 KLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRLP-------SDVLSDKLFYL 884 (884)
Q Consensus 837 ~LC~ly~~~~~~isvPaP~~YAhklA~~vg~~i~~~p-------~~~L~~~lfyL 884 (884)
+|||||+|++.++|+||||||||++|+++|+..+-+- ...|++++|||
T Consensus 373 ~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~~~~~~~~~~~~~~~~~~wfl 427 (427)
T 2w42_A 373 YLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGGYPINPEGNRSLQTNPWFL 427 (427)
T ss_dssp HHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHTTCCCC-----CHHHHSCTTC
T ss_pred HhhCcccCCCCCCCcCcchHhHHHHHHHHhhhhhcCCCccChhHhhhhccCCCcC
Confidence 9999999999999999999999999999988532211 26888999998
No 9
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=100.00 E-value=8.7e-36 Score=289.53 Aligned_cols=147 Identities=32% Similarity=0.657 Sum_probs=100.7
Q ss_pred ecchhhhHHHHHHHhhcCcHHHHHHHhhhheeEEEeecCceeeeeccccccCccccccccCCC-cchhhhhhhhcceeec
Q psy11920 287 RTSTCLDLIDELKEKFGGNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEP-KSYVDYYREAYNIEIR 365 (884)
Q Consensus 287 r~~tvld~~~~~~~~~~~~~~~~~~k~L~Gl~V~t~ynnktyrI~~I~~~~~p~~tF~~~dG~-iSv~dYyk~~Yni~i~ 365 (884)
|++||+|+|.++++++..+|++++.++|+|++|+|.||||+|+|+||+|+.+|.++|..+||. +||+|||+++|||+|+
T Consensus 1 r~~tvld~m~~~~~~~~~~~~~~~~k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg~~iT~~eYf~~kY~i~I~ 80 (148)
T 3qir_A 1 RNDCVLDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVK 80 (148)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTTSCEEEHHHHHHHHHCCCCS
T ss_pred CcchHHHHHHHHHhhCcHHHHHHHHHHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCCCCcccHHHHHHHHcCCeec
Confidence 679999999999876556799999999999999999999999999999999999999998898 9999999999999999
Q ss_pred cCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhhHHHHhhhccccccCCchhHHHHH
Q psy11920 366 DKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQVMKSIASFTRVDPNQKLQAIS 435 (884)
Q Consensus 366 ~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d~~~mk~l~~~t~~~P~~R~~~i~ 435 (884)
|++||||+++.|++...++... .+++|||||||+++||+|+||+||++||+|+++|+++|++|++.|+
T Consensus 81 ~~~qPlL~~~~k~~~~~~~~~~--~~~~yL~pELC~ltgLtd~~r~d~~~mk~l~~~tr~~P~~R~~~l~ 148 (148)
T 3qir_A 81 EEDQPLLIHRPSERQDNHGMLL--KGEILLLPELSFMTGIPEKMKKDFRAMKDLAQQINLSPKQHHSALE 148 (148)
T ss_dssp CTTCCEEEECCTTCCCC---CC--SCCEEECGGGEECC--------------------------------
T ss_pred CCCCceEEeecccccCCCCCCc--cceeeecHHHhhhcCCCHHHHhhhHHHHHHHHHHCCCHHHHHHhhC
Confidence 9999999999876543222210 1579999999999999999999999999999999999999998763
No 10
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.98 E-value=2.1e-33 Score=275.06 Aligned_cols=148 Identities=45% Similarity=0.778 Sum_probs=102.9
Q ss_pred ecchhhhHHHHHHHhhc-CcHHHHHHHhhhheeEEEeecCceeeeeccccccCccccccccCCC-cchhhhhhhhcceee
Q psy11920 287 RTSTCLDLIDELKEKFG-GNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEP-KSYVDYYREAYNIEI 364 (884)
Q Consensus 287 r~~tvld~~~~~~~~~~-~~~~~~~~k~L~Gl~V~t~ynnktyrI~~I~~~~~p~~tF~~~dG~-iSv~dYyk~~Yni~i 364 (884)
|++||+|+|.++++... .++++++.++|+|++|+|.||||+|+|+||+|+.+|.++|+..+|. +||+|||+++||++|
T Consensus 1 r~~tvld~~~~~~~~~~~~~~~~~~~~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~g~~~T~~eYf~~~Y~i~i 80 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEI 80 (150)
T ss_dssp CCCBHHHHHHHHHHHSCHHHHHHHHHHHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSSSCCCCHHHHHHTTCCCCC
T ss_pred CCccHHHHHHHHHccccchHHHHHHHHHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCCCceeeHHHHHHHHcCCcc
Confidence 57899999999886532 3588899999999999999999999999999999999999987777 999999999999999
Q ss_pred ccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhhHHHHhhhccccccCCchhHHHHHHh
Q psy11920 365 RDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQVMKSIASFTRVDPNQKLQAISKY 437 (884)
Q Consensus 365 ~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d~~~mk~l~~~t~~~P~~R~~~i~~~ 437 (884)
+|++||||+++.+++...++... +++|||||||.++||+|+||+||++|++|+++|+++|++|++.|.+|
T Consensus 81 ~~~~qPlL~~~~~~~~~~~~~~~---~~~~LppELC~i~~L~d~~rs~~~~mk~l~~~t~~~P~~R~~~i~~f 150 (150)
T 2xfm_A 81 TDLKQPVLVSQPKRRRGPGGTLP---GPAMLIPELCYLTGLTDKMRNDFNVMKDLAVHTRLTPEQRQREVGRL 150 (150)
T ss_dssp CCSSSCEEEECSSCTTCCSSCSS---CCEEECGGGEEECSTTC------------------------------
T ss_pred CCCCCCeEEeccccccccccccc---ceEEecHHHhccCCCCHHHHhhHHHHHHHHHHHccCHHHHHHHHhcC
Confidence 99999999998775532222211 46999999999999999999999999999999999999999988764
No 11
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.96 E-value=8e-31 Score=246.88 Aligned_cols=122 Identities=46% Similarity=0.779 Sum_probs=99.0
Q ss_pred cchhhhHHHHHHHh-hcCcHHHHHHHhhhheeEEEeecCceeeeeccccccCccccccccCCC-cchhhhhhhhcceeec
Q psy11920 288 TSTCLDLIDELKEK-FGGNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEP-KSYVDYYREAYNIEIR 365 (884)
Q Consensus 288 ~~tvld~~~~~~~~-~~~~~~~~~~k~L~Gl~V~t~ynnktyrI~~I~~~~~p~~tF~~~dG~-iSv~dYyk~~Yni~i~ 365 (884)
++||+|+|.++.++ +..+|++++.++|+|++|+|.||||+|+|++|+|+.+|.++|..+||. +||+|||+++||++|+
T Consensus 1 ~~tvld~~~~~~~~~~~~~~~~~~~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg~~~T~~eYyk~kY~i~I~ 80 (124)
T 3o7v_X 1 SETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT 80 (124)
T ss_dssp -CBHHHHHHHSCCCSSHHHHHHHHHHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTTSCEEEHHHHHHHHHCCCCC
T ss_pred CccHHHHHHHHHHhcccHHHHHHHHHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCCCCeeeHHHHHHHHhCceec
Confidence 47999999998754 445799999999999999999999999999999999999999988888 9999999999999999
Q ss_pred cCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhh
Q psy11920 366 DKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRND 412 (884)
Q Consensus 366 ~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d 412 (884)
+++||||+++.|++...++.+. +++|||||||++|||||+||+|
T Consensus 81 ~~~QPLL~~~~k~~~~~~~~~~---~~iyLipELC~ltGltd~~r~d 124 (124)
T 3o7v_X 81 DLKQPMLVSQPKRRRGPGGTLP---GPAMLIPELCYLTGLTDKMRND 124 (124)
T ss_dssp CSSCCEEEECCC-------------CCEEECGGGEECCCCC------
T ss_pred CCCcceEEEeeecccCCCCCCc---ceEEechhheeccCCChHhccC
Confidence 9999999999876543333222 6899999999999999999986
No 12
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.90 E-value=1.8e-25 Score=218.45 Aligned_cols=134 Identities=19% Similarity=0.304 Sum_probs=114.9
Q ss_pred CCCceEEEecccEEEEEEecc--cccchhhhhhcccCCceeeeeeeCceEEEeccchhhhHHHHhh-hc---------cc
Q psy11920 497 TNPALTVVNFDQWVLIHIRRD--QRNADNFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK-SM---------RS 564 (884)
Q Consensus 497 ~~~~~~~~~l~~W~vv~~~~~--~~~~~~f~~~L~~~~~~~Gi~i~~P~~~~~~~~~~~~~~~~l~-~~---------~~ 564 (884)
+++|++++++++|++|++.++ ++.+++|++.|.+.|+.+||.+..|.++.+..++++++.++|+ .. +.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCC
Confidence 568999999999999999764 3578899999999999999999988766554455666666665 21 36
Q ss_pred CceEEEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEE
Q psy11920 565 DTQFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSV 632 (884)
Q Consensus 565 ~~~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v 632 (884)
+++|||||+|+++.+.|+.||++||++.|||||||..+|+.+. ..+|++||+||||+||||+||.+
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~--~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHC--CHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCC--CHHHHHHHHHHHHHhhCcccccC
Confidence 7999999999998899999999999999999999999998764 37899999999999999999864
No 13
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.90 E-value=2.6e-25 Score=215.27 Aligned_cols=132 Identities=20% Similarity=0.297 Sum_probs=114.3
Q ss_pred CCCceEEEecccEEEEEEe--cccccchhhhhhcccCCceeeeeeeCceEE---EeccchhhhHHHHhh-hcccCceEEE
Q psy11920 497 TNPALTVVNFDQWVLIHIR--RDQRNADNFLNCLNRNSNAIGIRVKKPQVI---ALQEEQTLSYLTALK-SMRSDTQFVV 570 (884)
Q Consensus 497 ~~~~~~~~~l~~W~vv~~~--~~~~~~~~f~~~L~~~~~~~Gi~i~~P~~~---~~~~~~~~~~~~~l~-~~~~~~~lvl 570 (884)
+++|++++++++|++|++. ++.+.+++|++.|.+.|+.+||.+.+|.++ ....++.+.+++.+. .. .++||||
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~-~~~qlv~ 80 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRA-PGLQLLI 80 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHC-TTCSEEE
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhc-CCCcEEE
Confidence 4579999999999999983 467889999999999999999999987543 233456677777776 44 6799999
Q ss_pred EEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEE
Q psy11920 571 IIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSV 632 (884)
Q Consensus 571 ~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v 632 (884)
||+|+++.+ |+.||++||++.|||||||..+|+.+. .++|++||+||||+||||+||.+
T Consensus 81 ~ilp~~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~--~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 81 VILPDVTGS-YGKIKRICETELGIVSQCCQPRQVNKL--NKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp EECCSSSSC-HHHHHCCCCCCCCCCEEEECHHHHHHT--CHHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEECCCCCc-HHHHHHHHhccCCcceEEechhhhcCC--CHHHHHHHHHHHhhhhCcccCcC
Confidence 999998888 999999999999999999999998764 47899999999999999999864
No 14
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.89 E-value=3e-24 Score=210.53 Aligned_cols=133 Identities=14% Similarity=0.239 Sum_probs=98.9
Q ss_pred CCCceEEEecccEEEEEEeccc---ccchhhhhhcccCCceeeeeeeCceEEEec----cchhhhHHHHhh--------h
Q psy11920 497 TNPALTVVNFDQWVLIHIRRDQ---RNADNFLNCLNRNSNAIGIRVKKPQVIALQ----EEQTLSYLTALK--------S 561 (884)
Q Consensus 497 ~~~~~~~~~l~~W~vv~~~~~~---~~~~~f~~~L~~~~~~~Gi~i~~P~~~~~~----~~~~~~~~~~l~--------~ 561 (884)
+++|++++++++|++|++.++. +.+++|++.|.++++.+||.+++|.++... .++.+++.++|+ .
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 4689999999999999987643 488999999999999999999999876532 234444444443 1
Q ss_pred cc-cCceEEEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcceeEE
Q psy11920 562 MR-SDTQFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSV 632 (884)
Q Consensus 562 ~~-~~~~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v 632 (884)
.. ..+||||||+|+++ +.|+.||++||++.||+||||..+|+.+. .++|++||+||||+||||+||.+
T Consensus 82 ~~~~~pqlv~~ilp~~~-~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~--~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 82 HGGARPTLVLCAMSRKD-DGYKTLKWIAETKLGLVTQCFLTGPATKG--GDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TTTCCCCEEEEEESSCC-THHHHHHHCCCCCSCCEEEEEEHHHHSSS--CHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCcEEEEEECCCC-ccHHHHHHHHhhccCcceEEeehhhccCC--CHHHHHHHHHHHhhccCCccCcC
Confidence 11 36799999999987 46999999999999999999999999874 48999999999999999999864
No 15
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.88 E-value=4.1e-24 Score=206.63 Aligned_cols=131 Identities=20% Similarity=0.328 Sum_probs=108.4
Q ss_pred CCCCceEEEecccEEEEEEec----ccccchhhhhhcccCCceeeeeeeC-ceEEEec--cchhhhHHHHhhhcccCceE
Q psy11920 496 GTNPALTVVNFDQWVLIHIRR----DQRNADNFLNCLNRNSNAIGIRVKK-PQVIALQ--EEQTLSYLTALKSMRSDTQF 568 (884)
Q Consensus 496 r~~~~~~~~~l~~W~vv~~~~----~~~~~~~f~~~L~~~~~~~Gi~i~~-P~~~~~~--~~~~~~~~~~l~~~~~~~~l 568 (884)
|+++|++++++++|++|++.. +.+.+++|++.|.++|+.+||.+.. |.+.... .++.+.+++.+.....++||
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~~~~ql 80 (138)
T 3luc_A 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQL 80 (138)
T ss_dssp --CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHCTTCCE
T ss_pred CcCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcCCCCcE
Confidence 467899999999999999852 5678999999999999999999986 4444432 24556777776622257999
Q ss_pred EEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhhhhHHhhhhhhcccccCcce
Q psy11920 569 VVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSL 629 (884)
Q Consensus 569 vl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~ 629 (884)
||||+|+ +.+.|+.||++||++.|||||||..+|+.+. .++|++||+||||+||||+|
T Consensus 81 v~~ilp~-~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~--~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 81 VVVILPG-KTPVYAEVKRVGDTVLGMATQCVQMKNVQRT--TPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp EEEEECS-SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSC--CHHHHHHHHHHHHHHHSCC-
T ss_pred EEEEECC-CChHHHHHHHHhccCCCcceEEeCchhccCC--CHHHHHHHHHHHhhccCCcC
Confidence 9999996 6789999999999999999999999998765 37899999999999999987
No 16
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.77 E-value=7.9e-20 Score=177.43 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=88.1
Q ss_pred ecchhhhHHHHHHHh-------hcCcHHHHHHHhhhheeEEEee------cCceeeeeccccccCccccccccCCC-cch
Q psy11920 287 RTSTCLDLIDELKEK-------FGGNFMERLSQALIGEIVLTRY------NNQTYRIDEIDFKQTPMSTFTKRGEP-KSY 352 (884)
Q Consensus 287 r~~tvld~~~~~~~~-------~~~~~~~~~~k~L~Gl~V~t~y------nnktyrI~~I~~~~~p~~tF~~~dG~-iSv 352 (884)
.+++|+|||.++... ..+.++.+++++|+|++|.|.| ++|+|+|+||+|+.+++.+|+. +|. |||
T Consensus 3 ~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~-~g~~isv 81 (143)
T 1vyn_A 3 MAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH-DGKKVTI 81 (143)
T ss_dssp -CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEES-SSCEEEH
T ss_pred CcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEc-CCCEEEH
Confidence 467999999997622 1124677899999999999999 7899999999999999999987 455 999
Q ss_pred hhhhhhhcceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhc
Q psy11920 353 VDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTG 404 (884)
Q Consensus 353 ~dYyk~~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itg 404 (884)
+|||+++ |++|+||+||||++..+. +++|||||||.|++
T Consensus 82 ~~Yf~~~-~~~l~~p~lP~l~~g~~~------------k~~ylP~ElC~i~~ 120 (143)
T 1vyn_A 82 ASYFHSR-NYPLKFPQLHCLNVGSSI------------KSILLPIELCSIEE 120 (143)
T ss_dssp HHHHHHT-TCCCSSTTSEEEEEECSS------------SEEEEEGGGEEECC
T ss_pred HHHHHHc-CCCCCCCCCCeEEecCCC------------CCeEeccEeEEccC
Confidence 9999998 999999999999876431 56999999999984
No 17
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.73 E-value=1e-18 Score=164.95 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=87.4
Q ss_pred ecchhhhHHHHHHHh-------hcCcHHHHHHHhhhheeEEEee------cCceeeeeccccccCccccccccCCC-cch
Q psy11920 287 RTSTCLDLIDELKEK-------FGGNFMERLSQALIGEIVLTRY------NNQTYRIDEIDFKQTPMSTFTKRGEP-KSY 352 (884)
Q Consensus 287 r~~tvld~~~~~~~~-------~~~~~~~~~~k~L~Gl~V~t~y------nnktyrI~~I~~~~~p~~tF~~~dG~-iSv 352 (884)
+.++|+|||.++... .-++++++++++|+|++|.|.| ++|+|+|+||+|+.+++.+|.. ||. |||
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~-~g~~isV 79 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH-DGKKVTI 79 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCGGGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEES-SSSEEEH
T ss_pred CCccHHHHHHHHhhhcccccccCCHHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEee-CCcEEEH
Confidence 357999999998631 1135678999999999999988 5789999999999999999998 577 999
Q ss_pred hhhhhhhcceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhh
Q psy11920 353 VDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLT 403 (884)
Q Consensus 353 ~dYyk~~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~it 403 (884)
+|||+++ |++|++|+||||.+.. . . +++|||||||.++
T Consensus 80 ~~Yf~~~-~~~l~~p~lP~l~~g~--------~-~---~~~ylP~Elc~i~ 117 (124)
T 3mj0_A 80 ASYFHSR-NYPLKFPQLHCLNVGS--------S-I---KSILLPIELCSIE 117 (124)
T ss_dssp HHHHHTT-TCCCSCSSSEEEECCB--------T-T---BCCEECGGGEEEE
T ss_pred HHHHHHc-CCcccCCCCCeEeecC--------C-C---CceEecceeEEEC
Confidence 9999998 9999999999996531 1 2 6799999999987
No 18
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.44 E-value=1.1e-14 Score=175.34 Aligned_cols=103 Identities=26% Similarity=0.344 Sum_probs=82.7
Q ss_pred cHHH--HHHHhhhheeEEEeecC-ceeeeeccccccCccccccccCCCcchhhhhhhhcceeeccCCCceeEEeeecc--
Q psy11920 305 NFME--RLSQALIGEIVLTRYNN-QTYRIDEIDFKQTPMSTFTKRGEPKSYVDYYREAYNIEIRDKSQPMLITRVKRK-- 379 (884)
Q Consensus 305 ~~~~--~~~k~L~Gl~V~t~ynn-ktyrI~~I~~~~~p~~tF~~~dG~iSv~dYyk~~Yni~i~~~~qPllv~~~k~~-- 379 (884)
++++ .+.+.|+|.+|+|.||| |+|+|++|+|+.+|.++|..+++.+||.|||+++||++|++++||||+++.+++
T Consensus 145 ~~~d~~~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~ 224 (756)
T 2qvw_A 145 EYTDYSTLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRANESITYMRYYATAHNIHLRAADLPLVAAVRLDDLK 224 (756)
T ss_dssp C------CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEETTEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTT
T ss_pred ccccchhhHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCCCCCCCCHHHHHHHHcCcccccCCCCeEEEEeccccc
Confidence 3554 57789999999999999 999999999999999999976533999999999999999999999999987531
Q ss_pred -------cccCcCcccceehhhhhhhhhHhhcchHHhh
Q psy11920 380 -------TRRGTNVEESHYIAAIVPELAFLTGLSDAMR 410 (884)
Q Consensus 380 -------~~~~~~~~~~~~~~~lppELC~itgLtd~~r 410 (884)
+..++... +.++||||||.++||+..+.
T Consensus 225 ~~r~~~~~~~~~~~~---~~v~L~PELC~vt~Lp~sl~ 259 (756)
T 2qvw_A 225 DHQIPAPGSWDDLAP---KLRFLPPELCLLLPDEFDLI 259 (756)
T ss_dssp TCCCCSTTC-CCSCS---SCEEECTTTCEECCTTSCTT
T ss_pred ccccccccccccCCc---cceeeCHHHheeecCchhHH
Confidence 01011112 56899999999999987653
No 19
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.17 E-value=5.8e-12 Score=147.26 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=86.1
Q ss_pred eeeecchhhhHHHHHHHh-h-----cCcHH-HHHHHhhhheeEEEee------cCceeeeeccccccCccccccccCCCc
Q psy11920 284 RVLRTSTCLDLIDELKEK-F-----GGNFM-ERLSQALIGEIVLTRY------NNQTYRIDEIDFKQTPMSTFTKRGEPK 350 (884)
Q Consensus 284 k~~r~~tvld~~~~~~~~-~-----~~~~~-~~~~k~L~Gl~V~t~y------nnktyrI~~I~~~~~p~~tF~~~dG~i 350 (884)
+|+.+.+++|+|.+++.. + ..++. .++.+.|+|+.|.+.| .+|.|+|.++.+..+.+.+|+.++.+|
T Consensus 380 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~~~~~~ 459 (509)
T 1r6z_P 380 SFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKV 459 (509)
T ss_dssp CSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEETTEEE
T ss_pred ccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEeccCCeEE
Confidence 467788999999997632 1 11222 4588999999999888 478899999998788888998854339
Q ss_pred chhhhhhhhcceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhc
Q psy11920 351 SYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTG 404 (884)
Q Consensus 351 Sv~dYyk~~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itg 404 (884)
||+|||+ +||++|++|++|||.+..+ . +++|||+|||.|.+
T Consensus 460 sv~~yf~-~~~~~l~~p~lp~v~~~~~---------~---~~~~~P~e~~~i~~ 500 (509)
T 1r6z_P 460 TIASYFH-SRNYPLKFPQLHCLNVGSS---------I---KSILLPIELCSIEE 500 (509)
T ss_dssp EHHHHHH-HTTCCCSCTTSEEEECSCT---------T---SCCEECGGGEEEEC
T ss_pred EHHHHHH-HcCCcccCCCCCeEecCCC---------C---CCceecceeeEecC
Confidence 9999999 8999999999999954311 1 57999999999984
No 20
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=66.19 E-value=4.4 Score=39.03 Aligned_cols=102 Identities=18% Similarity=0.264 Sum_probs=54.7
Q ss_pred eEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhhcCCCCCceEEEeecc
Q psy11920 639 AMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDG 717 (884)
Q Consensus 639 tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDG 717 (884)
.-|=++|+||-... .+|+++|.-.|..+.+ -|-++.+.. +-.|+.. +|.+.|..-++.- .+|+-|+| ||
T Consensus 18 ~RIE~fDiSh~~G~---~~VasmVVf~~g~p~K~~YRrf~I~~---~g~DDya-~M~Evl~RR~~r~-~~PDLilI--DG 87 (159)
T 2nrr_A 18 YRIEGIDISHLQGK---YTVASLVVFEDGFPKKGDYRRYKIEQ---DHPDDYE-SIRTVVKRRYSKH-PLPNLLFV--DG 87 (159)
T ss_dssp CEEEEEEEECC------CCEEEEEEEETTEECGGGCEEEEC--------CHHH-HHHHHHHHHHTTS-CCCSEEEE--SS
T ss_pred CEEEEEECCccCCc---cceEEEEEEeCCccChhhCceeecCC---CCCCHHH-HHHHHHHHHhccC-CCCCEEEE--eC
Confidence 45668999997543 6688888887754432 111111211 1124444 4455554443322 79999988 87
Q ss_pred CCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 718 VSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 718 VseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
|.|| +.+.++++.++ +. .+.+|-+-|+ ..++|.
T Consensus 88 -GkgQ--------l~aA~~vl~el-------g~--~i~v~glAK~-~e~l~~ 120 (159)
T 2nrr_A 88 -GIGQ--------VNAAIEALKEI-------GK--DCPVVGLAKK-EETVVF 120 (159)
T ss_dssp -CHHH--------HHHHHHHHHHT-------TC--CCCEEEEC-----CEEE
T ss_pred -CHHH--------HHHHHHHHHHc-------CC--CccEEEEEcC-CcEEEe
Confidence 5676 44556777777 32 3567777786 344544
No 21
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=47.87 E-value=9.4 Score=38.81 Aligned_cols=102 Identities=18% Similarity=0.264 Sum_probs=59.0
Q ss_pred eEEEeeeeeecccCCCCCceEEEEecccCCchh-hhhHHHHHhcccchhhhhhhHHHHHHHHhhhcCCCCCceEEEeecc
Q psy11920 639 AMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDG 717 (884)
Q Consensus 639 tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~-y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDG 717 (884)
.-|=++|+||-... -.|+++|.-.|..+.+ -|-++.+.. +-.|+.. +|.+.|..-+..- .+|+-|+| ||
T Consensus 23 ~rIE~fDiSh~~G~---~~V~smVvf~~g~p~k~~YRrf~i~~---~g~DDya-~m~Evl~RR~~r~-~~PDLili--DG 92 (220)
T 2nrt_A 23 YRIEGIDISHLQGK---YTVASLVVFEDGFPKKGDYRRYKIEQ---DHPDDYE-SIRTVVKRRYSKH-PLPNLLFV--DG 92 (220)
T ss_dssp CEEEEEEEEEETTT---EEEEEEEEEETTEECGGGCEEEEEEC---SSCCHHH-HHHHHHHHHHTTS-CCCSEEEE--SS
T ss_pred CEEEEEECCccCCc---cceEEEEEEeCCccChhhCceeeCCC---CCCCHHH-HHHHHHHHHhccC-CCCCEEEE--eC
Confidence 34568999997533 5688888877754432 111112211 1124544 4445554433322 79999988 87
Q ss_pred CCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhh
Q psy11920 718 VSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQ 769 (884)
Q Consensus 718 VseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~ 769 (884)
|.|| +.+.++++.++ +. .+.+|-+-|+ ..++|.
T Consensus 93 -GkgQ--------l~~a~~vl~~l-------g~--~i~v~glaK~-~e~l~~ 125 (220)
T 2nrt_A 93 -GIGQ--------VNAAIEALKEI-------GK--DCPVVGLAKK-EETVVF 125 (220)
T ss_dssp -SHHH--------HHHHHHHHHHT-------TC--CCCEEEECTT-TCCEEE
T ss_pred -CHHH--------HHHHHHHHHHc-------CC--CCeEEEEECC-CcEEEe
Confidence 5677 44556777777 32 3567777786 334443
No 22
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=47.25 E-value=16 Score=37.29 Aligned_cols=102 Identities=13% Similarity=0.219 Sum_probs=53.6
Q ss_pred eeEEEeeeeeecccCCCCCceEEEEecccCCchhh-hhHHHHHh-cccchhhhhhhHHHHHHHHhhhcCCCCCceEEEee
Q psy11920 638 CAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTTY-YSQAVIQR-RGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFR 715 (884)
Q Consensus 638 ~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~y-~s~~~~Q~-~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYR 715 (884)
+.-|=++|+||-... -+|+++|.-.|..+.+- |-++.+.. .+..--..|.+.+........+....+|+-|+|
T Consensus 14 p~rIE~fDiSh~~G~---~~V~smVvf~~g~p~k~~YR~f~i~~~~g~DDya~m~Evl~RR~~r~~~e~~~~PDLili-- 88 (226)
T 3c65_A 14 PRRIEAFDNSNIYGA---DPVSALVVFLDGKPAKKEYRKYKVKTVAGPNDYETMREVVRRRYTRVLKEGLPLPDLIII-- 88 (226)
T ss_dssp CSEEEEEEEEESSSS---SCEEEEEEEETTEECGGGCEEEECCCCCTTCHHHHHHHHHHHHHHHHHHHTCCCCSEEEE--
T ss_pred CCEEEEEECCccCCc---CceEEEEEEeCCccChhhCceeecCCCCCCcHHHHHHHHHHHHHhhhhcccCCCCCEEEE--
Confidence 345568999997433 67888888877544321 11111211 111111233444443333333333469999998
Q ss_pred ccCCCCcccccceeehhhhHHHH-HHHHhcCCCCCCCcceeEEeeeee
Q psy11920 716 DGVSDGQLDSVSRVEIDQYQQIV-DTIMTTLPSCSYAPKITAIIVQKR 762 (884)
Q Consensus 716 DGVseGq~~~v~~~Ev~~i~~a~-~~~~~~~~~~~~~pklt~IvV~Kr 762 (884)
|| |-|| |.+.++++ .++ +. .+.+|-+-|.
T Consensus 89 DG-GkgQ--------l~~a~~vl~~~l-------g~--~i~v~glaK~ 118 (226)
T 3c65_A 89 DG-GKGH--------LSAVRDVLENEL-------GL--DVPLAGLAKD 118 (226)
T ss_dssp SS-CHHH--------HHHHHHHHHHTS-------CC--CCCEEEC---
T ss_pred eC-CHHH--------HHHHHHHHHHhc-------CC--CceEEEEEcC
Confidence 87 5677 44556777 466 32 3567777774
No 23
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=26.07 E-value=16 Score=35.04 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=44.4
Q ss_pred HHHHHHHhhhc-CCCCCceEEEeeccCCCCcccccceeehhh----hHHHHHHHHhcCCC--CCCCcceeEEeeeeecc
Q psy11920 693 FKQALDRFIQA-NSVPPKQIFIFRDGVSDGQLDSVSRVEIDQ----YQQIVDTIMTTLPS--CSYAPKITAIIVQKRIN 764 (884)
Q Consensus 693 ~~~aL~~f~~~-n~~lP~~IIiYRDGVseGq~~~v~~~Ev~~----i~~a~~~~~~~~~~--~~~~pklt~IvV~Krh~ 764 (884)
..+.|..|+++ .+.+|...+||-|+++|.+.......|+.- ++.++..+ +.. .=+.-.+|+||......
T Consensus 44 ~~~eL~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~L---GA~I~~FFd~~VTiVIT~R~i~ 119 (160)
T 3qbz_A 44 TPKELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTL---GAQITQFFDTTVTIVITRRSVE 119 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTT---TCEEESSCCTTCCEEEESSCSS
T ss_pred CHHHHHHHHHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHc---CCEeeeeccCCeEEEEecCcCc
Confidence 35677788775 357887778899999998776665556554 34555555 320 12456788777654433
Done!