RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11920
(884 letters)
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 392
Score = 283 bits (725), Expect = 6e-88
Identities = 65/396 (16%), Positives = 129/396 (32%), Gaps = 53/396 (13%)
Query: 504 VNFDQWVLIHI---RRDQRNADNFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK 560
+ +I + ++ + + FL L GI++K + + L
Sbjct: 35 KDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLI 94
Query: 561 S---MRSDTQFVVIIFN-------APRTDRYQAVKKYCCCERPIPSQVINSRTISREDKM 610
D V++ Y VK+ ++ IPSQVI +RT+ + +
Sbjct: 95 PVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKN-ENL 152
Query: 611 KSIVMKIALQINCKLGGSLWSVQ-IPYDCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDF 669
K +++ +A Q+ K G + ++ I +GID+ + N V N
Sbjct: 153 KFVLLNVAEQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKG 212
Query: 670 TT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSR 728
Y G+++T+ + +I + RDG
Sbjct: 213 ELVRYYLTSYPAFGEKLTEKA---IGDVFSLLEKLGFKKGSKIVVHRDGRLYRD------ 263
Query: 729 VEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVL 788
E+ +++ + Y + + + KR N + F + G
Sbjct: 264 -EVAAFKKYGE---------LYGYSLELLEIIKRNNPRFF---------SNEKFIKGYFY 304
Query: 789 DHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGT 848
+ S V +GT P + + V + L L + Y+
Sbjct: 305 KLSED----SVILATYNQVYEGTHQPIKVRKVYGELPV--EVLCSQILSLTLMNYSSFQP 358
Query: 849 IRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDKLFYL 884
I++PA Y+ +I L ++ P D +++L
Sbjct: 359 IKLPATVHYSDKITKLMLRGIE--PIKKEGDIMYWL 392
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 322
Score = 262 bits (671), Expect = 4e-81
Identities = 40/333 (12%), Positives = 116/333 (34%), Gaps = 39/333 (11%)
Query: 126 IKVMVNYIDLSVK-EGSGMYEYEVKFNPPIDSRGIRNRLINSLNDLLGQYKTFDGMNLFL 184
V++N + ++ K +Y Y + +P + + + + +G + + +
Sbjct: 2 AIVVINLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIAT 61
Query: 185 PFKLSSDTVNTTCQTREGSDVQITIIFKRQRQFYENLMFYNILFRKIAFLLSMVQFKDCL 244
+L + + I F R Y++ + +L + +
Sbjct: 62 TKELEYE---------GEFIPEGEISFSELRNDYQSKLVLRLLKENGIGEYELSKLLRKF 112
Query: 245 YDPRSKLLIPQYKLEVWPGFVTAIDEYEGGLKLQIDTSCRVLRTSTCLDLIDELKEKFG- 303
P++ +V P ++ +++ L I ++ T +L+++ ++
Sbjct: 113 RKPKTF-----GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQSMKTLWELVNKDPKELEE 167
Query: 304 ---------GNFMERLSQALIGEIVLTRYNNQTYRID---EIDFKQTPMSTFTKRGEPKS 351
+ + Y + + + P++
Sbjct: 168 FLMTHKENLMLKDIASPLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWNT-PEA 226
Query: 352 YVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRN 411
+++YR+ + D QP ++ + K ++ N Y ++P+L T ++ + +
Sbjct: 227 KLEFYRKFGQV---DLKQPAILAKFASKIKKNKN-----YKIYLLPQLVVPTYNAEQLES 278
Query: 412 DFQVMKSIASFTRVDPNQKLQAISKYINNVNNN 444
D V K I +T++ P ++ + + + V+++
Sbjct: 279 D--VAKEILEYTKLMPEERKELLENILAEVDSD 309
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
{Pyrococcus furiosus [TaxId: 2261]}
Length = 447
Score = 266 bits (681), Expect = 6e-81
Identities = 56/381 (14%), Positives = 124/381 (32%), Gaps = 66/381 (17%)
Query: 524 FLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALKSMRSDTQF---VVIIFNAPRTDR 580
FL+ + +I + E + S + + N +++
Sbjct: 113 FLDFRGKEKVITEDLNSDKGIIEVVE--------QVSSFMKGKELGLAFIAARNKLSSEK 164
Query: 581 YQAVKKYCCCERPIPSQVINSRTISREDKMK-------SIVMKIALQINCKLGGSLWSVQ 633
++ +K+ + SQV+N T+ + + + Q+ KLG + +
Sbjct: 165 FEEIKRRLF-NLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLD 223
Query: 634 IPYDCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTTYYSQAVIQRRGQEITDSIAQPF 693
++ +IGIDV +G V ++ + I + E D + + F
Sbjct: 224 YRFNYDYIIGIDVAPMKRS-EGYIGGSAVMFDSQGYIRKIVPIKIGEQRGESVD-MNEFF 281
Query: 694 KQALDRFIQANS-VPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAP 752
K+ +D+F + N + K+I + RDG ++ E + + I + +
Sbjct: 282 KEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISE---------MFDI 325
Query: 753 KITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTV 812
++ + V K + F + + +L+ ++Q
Sbjct: 326 EVVTMDVIKNHPVRAF-------------------ANMKMYFNLGGAIYLIPHKLKQAKG 366
Query: 813 TPSHYIVLR--------NDNNVKVDHLQRLSYKLCHLYYNWP-GTIRVPAVCQYAHRIAY 863
TP + + + + L L Y +R+PA YAH+ A
Sbjct: 367 TPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFAN 426
Query: 864 LTGMHLQRLPSDVLSDKLFYL 884
+ + L+++
Sbjct: 427 AIRNEWKIKEEFLAEGFLYFV 447
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 316
Score = 239 bits (610), Expect = 2e-72
Identities = 48/333 (14%), Positives = 108/333 (32%), Gaps = 34/333 (10%)
Query: 556 LTALKSM-----RSDTQFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKM 610
++KS + ++++ T Y +K Y IPSQ + +S +
Sbjct: 1 FDSIKSQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLI--NSIPSQFMRYDILSN-RNL 57
Query: 611 KSIVMKIALQINCKLGGSLWSVQI--PYDCAMVIGIDVYHEGVGSQGQNIVGLVASTNKD 668
V + +Q KLGG W + + ++IG N+ KD
Sbjct: 58 TFYVDNLLVQFVSKLGGKPWILNVDPEKGSDIIIGTGATRID----NVNLFCFAMVFKKD 113
Query: 669 FTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQAN-SVPPKQIFIFRDGVSDGQLDSVS 727
T +++ E + K+ + F ++N +++ + G D
Sbjct: 114 GTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKD--- 170
Query: 728 RVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSV 787
E ++ V+ + S K + + + + + P G+
Sbjct: 171 -GETKILKETVEELKKQE-MVSRDVKYAILHLNETHPFWVMGDPNNRFHP-----YEGTK 223
Query: 788 LDHTVTRKTLS--DFFLVSQHVRQGT-VTPSHYIVLRNDNNVK-----VDHLQRLSYKLC 839
+ + R L+ +L + T + P ++ ++ + V + Y L
Sbjct: 224 VKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLS 283
Query: 840 HLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRL 872
+ + + +P Y +A + ++ R
Sbjct: 284 KMNWRGFRSRNLPVTVNYPKLVAGIIA-NVNRY 315
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C
1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 63.0 bits (153), Expect = 2e-12
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 279 IDTSCRVLRTSTCLDLIDELKEKFGGNFMERLSQALIGEIVLTRYNNQ---TYRIDEIDF 335
I+ C VL IDE + + R ++ + G V + Q YR+ +
Sbjct: 6 IEFMCEVLDIRN----IDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTR 61
Query: 336 KQTPMSTFTKR-----GEPKSYVDYYREAYNIEIRDKSQPMLITRVKRK 379
+ TF + + Y+++ YN++++ P L ++K
Sbjct: 62 RPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQK 110
>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI
{Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 31.6 bits (72), Expect = 0.16
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 178 DGMNLFLPFKLSSDTVNTTCQTREGSDVQITIIFKRQRQFYENLMFYNILFRK 230
+ L L L S + +EG + +I I F+ R+ + + +RK
Sbjct: 20 GPLELDLTGDLESFK-KQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRK 71
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 29.8 bits (67), Expect = 0.61
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 325 NQTYRIDEIDFKQTPMSTFTKRGEPKSYVDYYREAYNIEIRDKSQPMLITRVKRK 379
+ YR++ + TF G+ + + Y + N ++ L K
Sbjct: 54 PRVYRVNGLSRAPASSETFEHDGKKVT-IASYFHSRNYPLKFPQLHCLNVGSSIK 107
>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus
[TaxId: 63363]}
Length = 126
Score = 28.8 bits (64), Expect = 1.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 516 RDQRNADNFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALKSMR 563
R +NA+ FL + R +G+ V +VI ++E +YL S++
Sbjct: 85 RRAKNAEEFLERVKR---EVGLVV---EVITPEQEGRYAYLAVAYSLK 126
>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI
{Human (Homo sapiens) [TaxId: 9606]}
Length = 179
Score = 28.9 bits (65), Expect = 1.9
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 200 REGSDVQITIIFKRQRQFYENLMFYNILFRK 230
+EGS+ ++ I FK R L + +R
Sbjct: 81 KEGSEYRVKIHFKVNRDIVSGLKYVQHTYRT 111
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 28.4 bits (63), Expect = 5.1
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 151 NPPIDSRGIRNRLINSLNDLLG 172
NPPIDS +R R + SL LG
Sbjct: 86 NPPIDS--LRERRVMSLKTRLG 105
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 28.0 bits (62), Expect = 5.7
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 151 NPPIDSRGIRNRLINSLNDLLG 172
NPPID +R L+ SL LG
Sbjct: 74 NPPIDP--LRENLVMSLAMFLG 93
>d2q3za1 b.1.18.9 (A:15-145) Transglutaminase N-terminal domain
{Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Length = 131
Score = 26.8 bits (59), Expect = 5.9
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 13/51 (25%)
Query: 672 YYSQAVIQRRGQEITDSI---AQPFKQALDRFIQANSVPPKQIFIFRDGVS 719
+ ++ RRGQ ++ + ++ ++D F G +
Sbjct: 12 LCREKLVVRRGQPFWLTLHFEGRNYQASVDSL----------TFSVVTGPA 52
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 347
Score = 27.3 bits (60), Expect = 8.7
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 343 FTKRGEPKSYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFL 402
+ + + Y+ N+ K PML ++++ + + + + FL
Sbjct: 20 QSSTSIRYNLEELYQAVENL-CSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFL 78
Query: 403 TGLSDAMRNDFQVMKSIASF 422
++ ++ + M I S
Sbjct: 79 KKINTCWQDHCRQMIMIRSI 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,226,353
Number of extensions: 153809
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 13
Length of query: 884
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 791
Effective length of database: 1,130,706
Effective search space: 894388446
Effective search space used: 894388446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)