BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11923
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 343 bits (880), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 199/366 (54%), Positives = 223/366 (60%), Gaps = 108/366 (29%)
Query: 141 EDPN--DPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVL 198
++PN +PRHL VMKGAPERILD+CS+I I+GKE+ LDEE+++AF NAY ELGGLGERVL
Sbjct: 463 KNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVL 522
Query: 199 GFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIXXXXXXXXXXXXKCRSAGIKV 258
GFC L LP ++FP GF+FD D+ NFPL + FVGL+SMI KCRSAGIKV
Sbjct: 523 GFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKV 582
Query: 259 IMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKS 318
IMVTGDHPITAK AIAK
Sbjct: 583 IMVTGDHPITAK-------------------------------------------AIAKG 599
Query: 319 VGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGS---------------------- 356
VGIISEGNETVEDIA RLNIPVS+VNPR+AKA VVHGS
Sbjct: 600 VGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVF 659
Query: 357 ---------------------VAM---GIAGSDVSKQA-----------------ADMIL 375
VA+ G+ S SK+A ADMIL
Sbjct: 660 ARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMIL 719
Query: 376 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGTVTILCI 435
LDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI+PFL FI+ +IPLPLGTVTILCI
Sbjct: 720 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCI 779
Query: 436 DLGTDM 441
DLGTDM
Sbjct: 780 DLGTDM 785
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/138 (73%), Positives = 110/138 (79%)
Query: 2 VTSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFII 61
V TA+G+V+ GD TVMGRIA LASGL+ G+TPIA EI HFIHIITGVAVFLGVSFFI+
Sbjct: 219 VEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFIL 278
Query: 62 AFALGYHWLDAVIFLIGIIVANVPEGXXXXXXXXXXXXXKRMASKNCLVKNLEAVETLGS 121
+ L Y WL+AVIFLIGIIVANVPEG KRMA KNCLVKNLEAVETLGS
Sbjct: 279 SLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGS 338
Query: 122 TSTICSDKTGTLTQNRMT 139
TSTICS KTGTLTQNRMT
Sbjct: 339 TSTICSXKTGTLTQNRMT 356
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQD 312
+I EADTTE+QSGV +D+TS + AL+RIA LCNRA F+ Q+
Sbjct: 365 QIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQE 407
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 199/366 (54%), Positives = 223/366 (60%), Gaps = 108/366 (29%)
Query: 141 EDPN--DPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVL 198
++PN +PRHL VMKGAPERILD+CS+I I+GKE+ LDEE+++AF NAY ELGGLGERVL
Sbjct: 469 KNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVL 528
Query: 199 GFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIXXXXXXXXXXXXKCRSAGIKV 258
GFC L LP ++FP GF+FD D+ NFPL + FVGL+SMI KCRSAGIKV
Sbjct: 529 GFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKV 588
Query: 259 IMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKS 318
IMVTGDHPITAK AIAK
Sbjct: 589 IMVTGDHPITAK-------------------------------------------AIAKG 605
Query: 319 VGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGS---------------------- 356
VGIISEGNETVEDIA RLNIPVS+VNPR+AKA VVHGS
Sbjct: 606 VGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVF 665
Query: 357 ---------------------VAM---GIAGSDVSKQA-----------------ADMIL 375
VA+ G+ S SK+A ADMIL
Sbjct: 666 ARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMIL 725
Query: 376 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGTVTILCI 435
LDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI+PFL FI+ +IPLPLGTVTILCI
Sbjct: 726 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCI 785
Query: 436 DLGTDM 441
DLGTDM
Sbjct: 786 DLGTDM 791
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/138 (74%), Positives = 111/138 (80%)
Query: 2 VTSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFII 61
V TA+G+V+ GD TVMGRIA LASGL+ G+TPIA EI HFIHIITGVAVFLGVSFFI+
Sbjct: 225 VEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFIL 284
Query: 62 AFALGYHWLDAVIFLIGIIVANVPEGXXXXXXXXXXXXXKRMASKNCLVKNLEAVETLGS 121
+ L Y WL+AVIFLIGIIVANVPEG KRMA KNCLVKNLEAVETLGS
Sbjct: 285 SLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGS 344
Query: 122 TSTICSDKTGTLTQNRMT 139
TSTICSDKTGTLTQNRMT
Sbjct: 345 TSTICSDKTGTLTQNRMT 362
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQD 312
+I EADTTE+QSGV +D+TS + AL+RIA LCNRA F+ Q+
Sbjct: 371 QIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQE 413
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/329 (47%), Positives = 199/329 (60%), Gaps = 32/329 (9%)
Query: 139 TTEDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVL 198
T EDP DPRH+ VMKGAPER+L++CS+I I G+E LDE+ REAF AY LGGLGERVL
Sbjct: 504 TLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVL 563
Query: 199 GFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIXXXXXXXXXXXXKCRSAGIKV 258
GFC L L +P G+ FD + NFP +G+ F GL+SMI KCR+AGI+V
Sbjct: 564 GFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRV 623
Query: 259 IMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKS 318
IMVTGDHPITAK I A G+ + + AR+ ++ K + I
Sbjct: 624 IMVTGDHPITAKAIAASV-----GIISEGSETVEDIAARLRVPVDQVNRKDARACVINGM 678
Query: 319 VGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHG----------------------- 355
+ +E VE + + + +P++ K +V
Sbjct: 679 QLKDMDPSELVEALRTHPEMVFARTSPQQ-KLVIVESCQRLGAIVAVTGDGVNDSPALKK 737
Query: 356 ---SVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI 412
VAMGIAGSD +K AADMILLDDNFASIVTGVE+GRLIFDNLKKSIAYTLT NIPE+
Sbjct: 738 ADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPEL 797
Query: 413 SPFLTFILLDIPLPLGTVTILCIDLGTDM 441
+P+L +I + +PLPLG +TIL I+L TD+
Sbjct: 798 TPYLIYITVSVPLPLGCITILFIELCTDI 826
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 102/135 (75%)
Query: 5 TAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFA 64
TA+G+V++ GD T++GRIA LASG++ +TPIA EI HF+ II G+A+ G +FFI+A
Sbjct: 263 TAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMC 322
Query: 65 LGYHWLDAVIFLIGIIVANVPEGXXXXXXXXXXXXXKRMASKNCLVKNLEAVETLGSTST 124
+GY +L A++F + I+VA VPEG KR+ASKNC+VKNLEAVETLGSTS
Sbjct: 323 IGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSV 382
Query: 125 ICSDKTGTLTQNRMT 139
ICSDKTGTLTQNRMT
Sbjct: 383 ICSDKTGTLTQNRMT 397
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 271 IIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNET 328
I ADTTEDQSG +D++S ++AL R+ TLCNRA FK GQD +I + +ET
Sbjct: 407 IHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASET 464
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/373 (43%), Positives = 201/373 (53%), Gaps = 78/373 (20%)
Query: 140 TEDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLG 199
E ++ R+L VMKGAPERILD+CSTI +NG E+ L E+M+EAF NAY ELGGLGERVLG
Sbjct: 500 NEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLG 559
Query: 200 FCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIXXXXXXXXXXXXKCRSAGIKVI 259
FC LP DK+ G+ FD DEPNFP T + FVGLM+MI KCRSAGIKVI
Sbjct: 560 FCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVI 619
Query: 260 MVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSV 319
MVTGDHPITAK AIAK V
Sbjct: 620 MVTGDHPITAK-------------------------------------------AIAKGV 636
Query: 320 GIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDVSKQAADMIL-LDD 378
GIISEGNET+EDIA RLNIP+ +VNPR+AKA VVHGS D+S + D IL
Sbjct: 637 GIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDL-----KDLSTEVLDDILHYHT 691
Query: 379 NFASIVTGVEEGRLIFDNLKKSIA-YTLTSNIPEISPFLTFILLDIPLPLGTVTILCIDL 437
T ++ +I + ++ A +T + SP L DI + +G
Sbjct: 692 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALK--KADIGVAMGISGSDVSKQ 749
Query: 438 GTDM--------------------------ELTWQGKTHIPEISPFLTFILLDIPLPLGT 471
DM + + ++IPEI+PFL FI+ ++PLPLGT
Sbjct: 750 AADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGT 809
Query: 472 VTILCIDLGTDMI 484
VTILCIDLGTDM+
Sbjct: 810 VTILCIDLGTDMV 822
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 111/138 (80%)
Query: 2 VTSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFII 61
V TA+GVV+ GD TVMGRIA LASGL+ G TPIA EI HFIHIITGVAVFLGVSFFI+
Sbjct: 255 VEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFIL 314
Query: 62 AFALGYHWLDAVIFLIGIIVANVPEGXXXXXXXXXXXXXKRMASKNCLVKNLEAVETLGS 121
+ LGY WL+AVIFLIGIIVANVPEG KRMA KNCLVKNLEAVETLGS
Sbjct: 315 SLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGS 374
Query: 122 TSTICSDKTGTLTQNRMT 139
TSTICSDKTGTLTQNRMT
Sbjct: 375 TSTICSDKTGTLTQNRMT 392
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQD 312
+I EADTTE+QSG +D+TS + AL+RIA LCNRA F+ GQD
Sbjct: 401 QIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQD 443
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 84/99 (84%), Gaps = 2/99 (2%)
Query: 141 EDPN--DPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVL 198
++PN +P+HL VMKGAPERILD+CS+I ++GKE+ LDEE+++AF NAY ELGGLGERVL
Sbjct: 112 KNPNASEPKHLLVMKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVL 171
Query: 199 GFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMI 237
GFC LLLP ++FP GF+FD DE NFP+ + FVGL+SMI
Sbjct: 172 GFCHLLLPDEQFPEGFQFDTDEVNFPVDNLCFVGLISMI 210
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDG 313
+I EADTTE+QSGV +D+TS + AL+RIA LCNRA F+ Q+
Sbjct: 14 QIHEADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQEN 57
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 78/98 (79%), Gaps = 1/98 (1%)
Query: 141 EDPNDPR-HLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLG 199
E ++P+ H+ VMKGAPERILD+CS+I + GKE LD+EM++AF NAY ELGGLGERVLG
Sbjct: 110 EREDNPQSHVLVMKGAPERILDRCSSILVQGKEIPLDKEMQDAFQNAYLELGGLGERVLG 169
Query: 200 FCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMI 237
FC L LP+ KFP GFKFD DE NFP + FVGLMSMI
Sbjct: 170 FCQLNLPSGKFPRGFKFDTDELNFPTEKLCFVGLMSMI 207
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDG 313
+I EADTTEDQSG +D+ SP + AL+RIA LCNRA FK GQ+
Sbjct: 12 QIHEADTTEDQSGATFDKRSPTWTALSRIAGLCNRAVFKAGQEN 55
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 168/371 (45%), Gaps = 51/371 (13%)
Query: 101 KRMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTTEDPNDPRHLEV--------- 151
++M N V+NL VE + C+ L + T E D + + V
Sbjct: 450 EKMNVFNTEVRNLSKVER----ANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSR 505
Query: 152 --------MKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGFCDL 203
+KGAPE ++D+C+ + + + ++E + E G G L C
Sbjct: 506 AAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWG-TGRDTLR-CLA 563
Query: 204 LLPADKFPLGFKFDCDEPNFPL---TGMRFVGLMSMIXXXXXXXXXXXXKCRSAGIKVIM 260
L D P + D+ + + T + FVG++ M+ CR AGI+VIM
Sbjct: 564 LATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIM 623
Query: 261 VTGDHPITAKII--------EADTTEDQS--GVQYDRTSPGFKALARIATLCNRAE-FKG 309
+TGD+ TA I E + D++ G ++D LA C RA F
Sbjct: 624 ITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLP-----LAEQREACRRACCFAR 678
Query: 310 GQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDVSKQ 369
+ +K I E ++ ++I V++ P KA + +AMG +G+ V+K
Sbjct: 679 VEPSHKSK----IVEYLQSYDEITAMTGDGVNDA-PALKKAEI---GIAMG-SGTAVAKT 729
Query: 370 AADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGT 429
A++M+L DDNF++IV VEEGR I++N+K+ I Y ++SN+ E+ L +P L
Sbjct: 730 ASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIP 789
Query: 430 VTILCIDLGTD 440
V +L ++L TD
Sbjct: 790 VQLLWVNLVTD 800
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 10/144 (6%)
Query: 6 AKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFAL 65
A G+V + G +T +G+I + + +TP+ +++ F ++ V + V+ ++I
Sbjct: 219 ALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 278
Query: 66 ------GYHWLDAVIFLIGIIVANV----PEGXXXXXXXXXXXXXKRMASKNCLVKNLEA 115
G W+ I+ I VA PEG +RMA KN +V++L +
Sbjct: 279 FNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 338
Query: 116 VETLGSTSTICSDKTGTLTQNRMT 139
VETLG TS ICS KTGTLT N+M+
Sbjct: 339 VETLGCTSVICSXKTGTLTTNQMS 362
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 168/371 (45%), Gaps = 51/371 (13%)
Query: 101 KRMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTTEDPNDPRHLEV--------- 151
++M N V+NL VE + C+ L + T E D + + V
Sbjct: 451 EKMNVFNTEVRNLSKVER----ANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSR 506
Query: 152 --------MKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGFCDL 203
+KGAPE ++D+C+ + + + ++E + E G G L C
Sbjct: 507 AAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWG-TGRDTLR-CLA 564
Query: 204 LLPADKFPLGFKFDCDEPNFPL---TGMRFVGLMSMIXXXXXXXXXXXXKCRSAGIKVIM 260
L D P + D+ + + T + FVG++ M+ CR AGI+VIM
Sbjct: 565 LATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIM 624
Query: 261 VTGDHPITAKII--------EADTTEDQS--GVQYDRTSPGFKALARIATLCNRAE-FKG 309
+TGD+ TA I E + D++ G ++D LA C RA F
Sbjct: 625 ITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLP-----LAEQREACRRACCFAR 679
Query: 310 GQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDVSKQ 369
+ +K I E ++ ++I V++ P KA + +AMG +G+ V+K
Sbjct: 680 VEPSHKSK----IVEYLQSYDEITAMTGDGVNDA-PALKKAEI---GIAMG-SGTAVAKT 730
Query: 370 AADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGT 429
A++M+L DDNF++IV VEEGR I++N+K+ I Y ++SN+ E+ L +P L
Sbjct: 731 ASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIP 790
Query: 430 VTILCIDLGTD 440
V +L ++L TD
Sbjct: 791 VQLLWVNLVTD 801
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 6 AKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFAL 65
A G+V + G +T +G+I + + +TP+ +++ F ++ V + V+ ++I
Sbjct: 220 ALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 279
Query: 66 ------GYHWLDAVIFLIGIIVANV----PEGXXXXXXXXXXXXXKRMASKNCLVKNLEA 115
G W+ I+ I VA PEG +RMA KN +V++L +
Sbjct: 280 FNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 339
Query: 116 VETLGSTSTICSDKTGTLTQNRMT 139
VETLG TS ICSDKTGTLT N+M+
Sbjct: 340 VETLGCTSVICSDKTGTLTTNQMS 363
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 168/371 (45%), Gaps = 51/371 (13%)
Query: 101 KRMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTTEDPNDPRHLEV--------- 151
++M N V+NL VE + C+ L + T E D + + V
Sbjct: 450 EKMNVFNTEVRNLSKVER----ANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSR 505
Query: 152 --------MKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGFCDL 203
+KGAPE ++D+C+ + + + ++E + E G G L C
Sbjct: 506 AAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWG-TGRDTLR-CLA 563
Query: 204 LLPADKFPLGFKFDCDEPNFPL---TGMRFVGLMSMIXXXXXXXXXXXXKCRSAGIKVIM 260
L D P + D+ + + T + FVG++ M+ CR AGI+VIM
Sbjct: 564 LATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIM 623
Query: 261 VTGDHPITAKII--------EADTTEDQS--GVQYDRTSPGFKALARIATLCNRAE-FKG 309
+TGD+ TA I E + D++ G ++D LA C RA F
Sbjct: 624 ITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLP-----LAEQREACRRACCFAR 678
Query: 310 GQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDVSKQ 369
+ +K I E ++ ++I V++ P KA + +AMG +G+ V+K
Sbjct: 679 VEPSHKSK----IVEYLQSYDEITAMTGDGVNDA-PALKKAEI---GIAMG-SGTAVAKT 729
Query: 370 AADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGT 429
A++M+L DDNF++IV VEEGR I++N+K+ I Y ++SN+ E+ L +P L
Sbjct: 730 ASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIP 789
Query: 430 VTILCIDLGTD 440
V +L ++L TD
Sbjct: 790 VQLLWVNLVTD 800
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 6 AKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFAL 65
A G+V + G +T +G+I + + +TP+ +++ F ++ V + V+ ++I
Sbjct: 219 ALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 278
Query: 66 ------GYHWLDAVIFLIGIIVANV----PEGXXXXXXXXXXXXXKRMASKNCLVKNLEA 115
G W+ I+ I VA PEG +RMA KN +V++L +
Sbjct: 279 FNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 338
Query: 116 VETLGSTSTICSDKTGTLTQNRMT 139
VETLG TS ICSDKTGTLT N+M+
Sbjct: 339 VETLGCTSVICSDKTGTLTTNQMS 362
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 167/370 (45%), Gaps = 50/370 (13%)
Query: 101 KRMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTTEDPNDPRHLEV--------- 151
++M N V+NL VE + C+ L + T E D + + V
Sbjct: 450 EKMNVFNTEVRNLSKVER----ANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRA 505
Query: 152 -------MKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGFCDLL 204
+KGAPE ++D+C+ + + + ++E + E G G L C L
Sbjct: 506 AVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWG-TGRDTLR-CLAL 563
Query: 205 LPADKFPLGFKFDCDEPNFPL---TGMRFVGLMSMIXXXXXXXXXXXXKCRSAGIKVIMV 261
D P + D+ + T + FVG++ M+ CR AGI+VIM+
Sbjct: 564 ATRDTPPKREEMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMI 623
Query: 262 TGDHPITAKII--------EADTTEDQ--SGVQYDRTSPGFKALARIATLCNRAE-FKGG 310
TGD+ TA I E + D+ +G ++D LA C RA F
Sbjct: 624 TGDNKGTAIAICRRIGIFGENEDVADRAYTGREFDDLP-----LAEQREACRRACCFARV 678
Query: 311 QDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDVSKQA 370
+ +K I E ++ ++I V++ P KA + +AMG +G+ V+K A
Sbjct: 679 EPTHKSK----IVEYLQSFDEITAMTGDGVNDA-PALKKAEI---GIAMG-SGTAVAKTA 729
Query: 371 ADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGTV 430
++M+L DDNF++IV VEEGR I++N+K+ I Y ++SN+ E+ L +P L V
Sbjct: 730 SEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPV 789
Query: 431 TILCIDLGTD 440
+L ++L TD
Sbjct: 790 QLLWVNLVTD 799
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 10/144 (6%)
Query: 6 AKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFAL 65
A G+V + G T +G+I + + +TP+ +++ F ++ V + V+ ++I
Sbjct: 219 AIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 278
Query: 66 ------GYHWLDAVIFLIGIIVANV----PEGXXXXXXXXXXXXXKRMASKNCLVKNLEA 115
G W+ I+ I VA PEG +RMA KN +V++L +
Sbjct: 279 FNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 338
Query: 116 VETLGSTSTICSDKTGTLTQNRMT 139
VETLG TS ICSDKTGTLT N+M+
Sbjct: 339 VETLGCTSVICSDKTGTLTTNQMS 362
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 20/145 (13%)
Query: 9 VVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFALGYH 68
V+ + GDNT +GR A L + G HF ++ G+ L ++ F L
Sbjct: 259 VITATGDNTFVGRAAALVNAASGGSG-------HFTEVLNGIGTIL---LILVIFTLLIV 308
Query: 69 WLDAVI----------FLIGIIVANVPEGXXXXXXXXXXXXXKRMASKNCLVKNLEAVET 118
W+ + F + I + VP G +A K +V+ L A+E+
Sbjct: 309 WVSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIES 368
Query: 119 LGSTSTICSDKTGTLTQNRMTTEDP 143
L +CSDKTGTLT+N+++ DP
Sbjct: 369 LAGVEILCSDKTGTLTKNKLSLHDP 393
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 7 KGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSF---FIIAF 63
+ VVI+ G +T G+ A L + ++ HF ++T + F S +I
Sbjct: 208 EAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAIGMVIEI 259
Query: 64 ALGY-----HWLDAVIFLIGIIVANVPEGXXXXXXXXXXXXXKRMASKNCLVKNLEAVET 118
+ Y + D + L+ +++ +P R++ + + K + A+E
Sbjct: 260 IVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEE 319
Query: 119 LGSTSTICSDKTGTLTQNRMTTE 141
+ +CSDKTGTLT N+++ +
Sbjct: 320 MAGMDVLCSDKTGTLTLNKLSVD 342
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 21/146 (14%)
Query: 11 ISCGDNTVMGRIAGLASGLDTGETPIAKEIH----HFIHIITGVAVFLGVSFFIIAF--- 63
+ G +T++ RI + S PI + F+ + VAV SF + A
Sbjct: 307 LHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVL---SFIVWALLGP 363
Query: 64 --ALGYHWLDAVIFLIGIIVANVPEGXXXXXXXXXXXXXKRMASKNCLVKNLEAVETLGS 121
AL Y +I + +++ P + A L+KN EA+E +
Sbjct: 364 QPALSY----GLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEK 419
Query: 122 TSTICSDKTGTLTQ-----NRMTTED 142
+T+ DKTGTLT+ R+ T+D
Sbjct: 420 VNTLVVDKTGTLTEGHPKLTRIVTDD 445
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 11/154 (7%)
Query: 13 CGDNTVMGRIAGLASGLDTGETPIA----KEIHHFIHIITGVAVFLGVSFFIIAFALGYH 68
G T++ +I L + PI K + +FI + VA+ + ++ IA A
Sbjct: 216 VGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA---P 272
Query: 69 WLDAVIFLIGIIVANVPEGXXXXXXXXXXXXXKRMASKNCLVKNLEAVETLGSTSTICSD 128
L A LI ++V P + A L+KN +A+E + + D
Sbjct: 273 LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFD 332
Query: 129 KTGTLTQNRMTTED----PNDPRHLEVMKGAPER 158
KTGTLT+ + D D R L + ER
Sbjct: 333 KTGTLTKGKPEVTDLVPLNGDERELLRLAAIAER 366
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 359 MGIA---GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 409
+GIA GSDV+ ++ D++L+ D+ +V ++ R +K++I + L N+
Sbjct: 539 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 592
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 11/154 (7%)
Query: 13 CGDNTVMGRIAGLASGLDTGETPIA----KEIHHFIHIITGVAVFLGVSFFIIAFALGYH 68
G T++ +I L + PI K + +FI + VA+ + ++ IA A
Sbjct: 294 VGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA---P 350
Query: 69 WLDAVIFLIGIIVANVPEGXXXXXXXXXXXXXKRMASKNCLVKNLEAVETLGSTSTICSD 128
L A LI ++V P + A L+KN +A+E + + D
Sbjct: 351 LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFD 410
Query: 129 KTGTLTQNRMTTED----PNDPRHLEVMKGAPER 158
KTGTLT+ + D D R L + ER
Sbjct: 411 KTGTLTKGKPEVTDLVPLNGDERELLRLAAIAER 444
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 359 MGIA---GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 409
+GIA GSDV+ ++ D++L+ D+ +V ++ R +K++I + L N+
Sbjct: 617 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 670
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 144 NDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGFCDL 203
N H V KGA + IL+ CS + NG+ LD+ M L G RV+
Sbjct: 78 NTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVATK 137
Query: 204 LLPADKFPLGFKFDCDEPNFPLTG 227
LPA + G DE + L G
Sbjct: 138 YLPARE---GDYQRADESDLILEG 158
>pdb|2VOY|K Chain K, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 32
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 389 EGRLIFDNLKKSIAYTLTSNIPEI 412
EGR I++N+K+ I Y ++SN+ E+
Sbjct: 1 EGRAIYNNMKQFIRYLISSNVGEV 24
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 101 KRMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTTED----PNDPRHLEVMKGAP 156
++ A L+KN +A+E + + DKTGTLT+ + D D R L +
Sbjct: 11 RKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIA 70
Query: 157 ER 158
ER
Sbjct: 71 ER 72
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 101 KRMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTTED----PNDPRHLEVMKGAP 156
++ A L+KN +A+E + + DKTGTLT+ + D D R L +
Sbjct: 11 RKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIA 70
Query: 157 ER 158
ER
Sbjct: 71 ER 72
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 101 KRMASKNCLVKNLEAVETLGSTSTICSDKTGTLT 134
++M K ++KN E + TI DKTGTLT
Sbjct: 7 EKMLHKGMIIKNSNVYEKIKEIDTIIFDKTGTLT 40
>pdb|2PGX|A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli,
Northeast Structural Genomics Target Er585
Length = 258
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 302 CNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGI 361
+R +F GG+ A+AK+VGI + V D L + A V SV +
Sbjct: 65 AHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLG-----------RDAFVLASVGCRV 113
Query: 362 AGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILL 421
+ + LLDD A E G + + L+ A +LT+ + +I+P + L
Sbjct: 114 --RXLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-LTDITPRPQVVYL 170
Query: 422 DIPLP 426
D P
Sbjct: 171 DPXFP 175
>pdb|2OYR|A Chain A, Crystal Structure Of Upf0341 Protein (Yhiq) From Shigella
Flexneri In Complex With S-Adenosyl Homocysteine,
Northeast Structural Genomics Target Sfr275
Length = 258
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 302 CNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGI 361
+R +F GG+ A+AK+VGI + V D L + A V SV +
Sbjct: 65 AHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLG-----------RDAFVLASVGCRV 113
Query: 362 AGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILL 421
+ + LLDD A E G + + L+ A +LT+ + +I+P + L
Sbjct: 114 --RXLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-LTDITPRPQVVYL 170
Query: 422 DIPLP 426
D P
Sbjct: 171 DPXFP 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,638,603
Number of Sequences: 62578
Number of extensions: 555444
Number of successful extensions: 1318
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 74
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)