RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11923
(492 letters)
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 429 bits (1106), Expect = e-141
Identities = 201/344 (58%), Positives = 231/344 (67%), Gaps = 43/344 (12%)
Query: 139 TTEDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVL 198
EDP DPRHL VMKGAPERIL++CS+I I+GKE+ LDEE++EAF NAY ELGGLGERVL
Sbjct: 468 ENEDPRDPRHLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVL 527
Query: 199 GFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKV 258
GFC L LP ++FP GF+FD D+ NFP + FVGL+SMIDPPRAAVPDAV KCRSAGIKV
Sbjct: 528 GFCHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKV 587
Query: 259 IMVTGDHPITAKIIEA---------DTTED---QSGVQYDRTSPGFKALARIAT------ 300
IMVTGDHPITAK I +T ED + + + +P A A +
Sbjct: 588 IMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPR-DAKACVVHGSDLKD 646
Query: 301 ---------LCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAA 351
L E + K II EG + I V++ +P KA
Sbjct: 647 MTSEQLDEILKYHTEIVFARTSPQQKL--IIVEGCQRQGAIVAVTGDGVND-SPALKKAD 703
Query: 352 VVHGSVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPE 411
+ VAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPE
Sbjct: 704 I---GVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPE 760
Query: 412 ISPFLTFILLDIPLPLGTVTILCIDLGTDMELTWQGKTHIPEIS 455
I+PFL FI+ +IPLPLGT+TILCIDLGTDM +P IS
Sbjct: 761 ITPFLIFIIANIPLPLGTITILCIDLGTDM---------VPAIS 795
Score = 288 bits (739), Expect = 1e-87
Identities = 117/138 (84%), Positives = 126/138 (91%)
Query: 2 VTSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFII 61
V TA+G+V++ GD TVMGRIA LASGL+ G+TPIA EI HFIHIITGVAVFLGVSFFI+
Sbjct: 224 VEGTARGIVVNTGDRTVMGRIASLASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFIL 283
Query: 62 AFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETLGS 121
+ LGY WL+AVIFLIGIIVANVPEGLLATVTVCLTLTAKRMA KNCLVKNLEAVETLGS
Sbjct: 284 SLILGYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGS 343
Query: 122 TSTICSDKTGTLTQNRMT 139
TSTICSDKTGTLTQNRMT
Sbjct: 344 TSTICSDKTGTLTQNRMT 361
Score = 82.1 bits (203), Expect = 2e-16
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNET 328
+I EADTTEDQSGV +D++S + AL+RIA LCNRA FK GQ+ + + +E+
Sbjct: 370 QIHEADTTEDQSGVSFDKSSATWLALSRIAGLCNRAVFKAGQENVPILKRAVAGDASES 428
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 207 bits (529), Expect = 1e-60
Identities = 130/510 (25%), Positives = 194/510 (38%), Gaps = 160/510 (31%)
Query: 2 VTSTAKGVVISCGDNTVMGRIAGL-ASGLDTGETPIAKEIHHFIH-IITGVAVFLGVSFF 59
T VV G T +GRIA + +G +T TP+ + + I + L ++ F
Sbjct: 116 FGGTLIVVVTPTGILTTVGRIAVVVKTGFET-RTPLQSKRDRLENFIFILFLLLLALAVF 174
Query: 60 I---IAFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAV 116
+ I A++ + ++V VP L A VTV L + R+A K LV+NL A+
Sbjct: 175 LYLFIRGWDPNSIFKALLRALIVLVIVVPPALPAAVTVALAVGDARLAKKGILVRNLNAL 234
Query: 117 ETLGSTSTICSDKTGTLTQNRMTTEDPN----------------------DPRHLEVMKG 154
E LG +CSDKTGTLT+N+MT + DP ++K
Sbjct: 235 EELGKVDYLCSDKTGTLTKNKMTLQGVYIDGGKEDNSSSLVACDNNYLSGDPMEKALLKS 294
Query: 155 APERILD-------------------KCSTIFINGKEKVL-------DEEMREAFNNA-- 186
A K ++ + + E + E NN
Sbjct: 295 AELVGKADKGNKEYKILDVFPFSSVLKRMSVIVETPDGSDLLFVKGAPEFILERCNNYEE 354
Query: 187 -YYELGGLGERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVP 245
Y EL G RVL F L D + F+GL++ DP R
Sbjct: 355 KYLELARQGLRVLAFASKELEDD-------------------LEFLGLITFEDPLRPDAK 395
Query: 246 DAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRA 305
+ + + ++AGIKV+M+TGD+ +TAK
Sbjct: 396 ETIEELKAAGIKVVMITGDNVLTAK----------------------------------- 420
Query: 306 EFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVV------HGSVAM 359
AIAK +GI + V+P E K +V VAM
Sbjct: 421 --------AIAKELGIDV----------------FARVSP-EQKLQIVEALQKKGHIVAM 455
Query: 360 ----------------GIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAY 403
GIA +K AAD++LLDD+ ++IV V+EGR IF N+K +I +
Sbjct: 456 TGDGVNDAPALKKADVGIA--MGAKAAADIVLLDDDLSAIVKAVKEGRKIFSNIKSNIFW 513
Query: 404 TLTSNIPEISPFLTFILLDIPLPLGTVTIL 433
+ N+ I L I++ + LP+ L
Sbjct: 514 AIAYNLILIPLALLLIVIILLLPMLAALAL 543
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 184 bits (469), Expect = 2e-50
Identities = 104/349 (29%), Positives = 151/349 (43%), Gaps = 100/349 (28%)
Query: 137 RMTT--EDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLG 194
RM+ + L +KGAPE IL++C +I G+ + L EE A EL G
Sbjct: 454 RMSVIVKTDEGKYIL-FVKGAPEVILERCKSI---GELEPLTEEGLRTLEEAVKELASEG 509
Query: 195 ERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSA 254
RVL L + + D E + + F+GL + DPPR V +A+ + R A
Sbjct: 510 LRVLAVAYKKLDRAEKDD--EVDEIE-----SDLVFLGLTGIEDPPREDVKEAIEELREA 562
Query: 255 GIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGA 314
GIKV M+TGDH TA A
Sbjct: 563 GIKVWMITGDHVETAI-------------------------------------------A 579
Query: 315 IAKSVGIISEG---------------NETVEDIALRLNIPVSEVNPREAKAAVV-----H 354
IAK GI +E +E + ++ L++ + V+P E KA +V
Sbjct: 580 IAKECGIEAEAESALVIDGAELDALSDEELAELVEELSV-FARVSP-EQKARIVEALQKS 637
Query: 355 G---------------------SVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLI 393
G +AMG G+D +K+AAD++LLDDNFA+IV V EGR +
Sbjct: 638 GHVVAMTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRV 697
Query: 394 FDNLKKSIAYTLTSNIPEISPFLTFILLDIP-LPLGTVTILCIDLGTDM 441
+ N+KK I Y L+ N+ E+ L + L ++ LPL + +L I+L TD
Sbjct: 698 YVNIKKFILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDS 746
Score = 150 bits (381), Expect = 7e-39
Identities = 58/150 (38%), Positives = 89/150 (59%), Gaps = 1/150 (0%)
Query: 2 VTSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFII 61
V+ AKG+V++ G T G+IA L +TP+ ++++ + +A+ LG F++
Sbjct: 227 VSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQRKLNKLGKFLLVLALVLGALVFVV 286
Query: 62 AFALGYH-WLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETLG 120
G + L++ + + + VA VPEGL A VT+ L L A+RMA N +V++L A+ETLG
Sbjct: 287 GLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAIETLG 346
Query: 121 STSTICSDKTGTLTQNRMTTEDPNDPRHLE 150
S ICSDKTGTLTQN+MT + +
Sbjct: 347 SVDVICSDKTGTLTQNKMTVKKIYINGGGK 376
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 147 bits (372), Expect = 1e-37
Identities = 100/309 (32%), Positives = 156/309 (50%), Gaps = 32/309 (10%)
Query: 147 RHLEVMKGAPERILDKCSTIFINGKEKV-LDEEMREAFNNAYYELGGL-GERVLGFCDLL 204
+ +KGAPE +L++C+ I V L ++M+ + E+G R L
Sbjct: 444 GNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFKD 503
Query: 205 LPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGD 264
+P D D + + F+G++ M+DPPR V DA+ KCR+AGI+VIM+TGD
Sbjct: 504 IP-DPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGD 562
Query: 265 HPITAKII----------EADTTEDQSGVQYDRTSPGFKALARIATLC-NRAEFKGGQDG 313
+ TA+ I E T + +G ++D P + A + + +R E
Sbjct: 563 NKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHKS-- 620
Query: 314 AIAKSVGIISEGNETVEDIALRLNIPVSEVN--PREAKAAVVHGSVAMGIAGSDVSKQAA 371
+ V ++ E E V + VN P KA + +AMG +G++V+K+A+
Sbjct: 621 ---ELVELLQEQGEIVA-------MTGDGVNDAPALKKADI---GIAMG-SGTEVAKEAS 666
Query: 372 DMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGTVT 431
DM+L DDNFA+IV VEEGR I++N+K+ I Y ++SNI E+ L IP L V
Sbjct: 667 DMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFLTAALGIPEGLIPVQ 726
Query: 432 ILCIDLGTD 440
+L ++L TD
Sbjct: 727 LLWVNLVTD 735
Score = 106 bits (267), Expect = 2e-24
Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 10/149 (6%)
Query: 1 MVTSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFI 60
+V A+GVV+ G +T +G+I + +TP+ K++ F +++ V + + ++
Sbjct: 158 VVAGKARGVVVRTGMSTEIGKIRDEMRAAEQEDTPLQKKLDEFGELLSKVIGLICILVWV 217
Query: 61 I------AFALGYHWLDAVIFLIGIIVA----NVPEGLLATVTVCLTLTAKRMASKNCLV 110
I ALG W+ I+ I VA +PEGL A +T CL L ++MA KN +V
Sbjct: 218 INIGHFNDPALGGGWIQGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKKNAIV 277
Query: 111 KNLEAVETLGSTSTICSDKTGTLTQNRMT 139
+ L +VETLG T+ ICSDKTGTLT N+M+
Sbjct: 278 RKLPSVETLGCTTVICSDKTGTLTTNQMS 306
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 123 bits (310), Expect = 7e-30
Identities = 95/285 (33%), Positives = 128/285 (44%), Gaps = 43/285 (15%)
Query: 153 KGAPERILDKCSTIFINGKEKV----LDEEMREAFNNAYYELGGLGERVLGFCD-LLLPA 207
KGA ERI++ CS+ NGK+ V L++ RE L G RVL F A
Sbjct: 557 KGAFERIIECCSSS--NGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKA 614
Query: 208 DKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPI 267
D K + + + F+GL+ + DPPR AV KC AGI V M+TGD P
Sbjct: 615 DNNDDQLKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPE 674
Query: 268 TAKIIE-----------ADTTEDQS-----GVQYDRTSP----GFKALARIATLCNRAEF 307
TAK I D E G Q+D S KAL + C +
Sbjct: 675 TAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLVIARCA-PQT 733
Query: 308 KGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDVS 367
K A+ + + + V D +P A V +AMGI GSDV+
Sbjct: 734 KVKMIEALHRRKAFCAMTGDGVND------------SPSLKMANV---GIAMGINGSDVA 778
Query: 368 KQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI 412
K A+D++L DDNFASI+ +EEGR +FDN+ K + + L N+ E
Sbjct: 779 KDASDIVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEA 823
Score = 77.7 bits (191), Expect = 5e-15
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 25/153 (16%)
Query: 11 ISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFALGYHWL 70
I V G GL G TP+ +++ I+ +A+ + I+ A +
Sbjct: 255 ILKVTKKVTGAFLGLNVG-----TPLHRKLSKLAVILFCIAIIFAI---IVMAAHKFDVD 306
Query: 71 DAV-IFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDK 129
V I+ I + ++ +PE L+A +++ + + A M+ +N +V+ L+A+E LG+ + ICSDK
Sbjct: 307 KEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDK 366
Query: 130 TGTLTQNRM----------------TTEDPNDP 146
TGT+TQ +M ++D +P
Sbjct: 367 TGTITQGKMIARQIWIPRFGTISIDNSDDAFNP 399
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 118 bits (297), Expect = 3e-28
Identities = 90/314 (28%), Positives = 146/314 (46%), Gaps = 50/314 (15%)
Query: 140 TEDPNDPRHLEVMKGAPERILDKCSTIF-INGKEKVLDEEMREAFNNAYYELGGLGERVL 198
D + MKGA E++L C+ +GK L ++ R+ E+ G RV+
Sbjct: 447 CVHRQDRSEMCFMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVI 506
Query: 199 GFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKV 258
F + F+GL+ + DPPR V +AV + G+++
Sbjct: 507 AFASGPE-------------------KGQLTFLGLVGINDPPRPGVKEAVTTLITGGVRI 547
Query: 259 IMVTGDHPITAKIIEAD------TTEDQSGVQYDRTSPGFKALARIATLCN---RA--EF 307
IM+TGD TA I T++ SG + D + L++I RA E
Sbjct: 548 IMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDD--QQLSQIVPKVAVFARASPEH 605
Query: 308 KGGQDGAIAKSVGIISEGNETVED-IALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDV 366
K A+ K +++ + V D AL+L +++ VAMG G+DV
Sbjct: 606 KMKIVKALQKRGDVVAMTGDGVNDAPALKL----ADI------------GVAMGQTGTDV 649
Query: 367 SKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLP 426
+K+AADMIL DD+FA+I++ +EEG+ IF+N+K I + L++++ +S L+ P P
Sbjct: 650 AKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAALSLIALATLMGFPNP 709
Query: 427 LGTVTILCIDLGTD 440
L + IL I++ D
Sbjct: 710 LNAMQILWINILMD 723
Score = 98.0 bits (244), Expect = 2e-21
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 14/141 (9%)
Query: 6 AKGVVISCGDNTVMGRIAGLASGLDTGETPI-------AKEIHHFIHIITGVAVFLGVSF 58
KG+V+ G NT G + + ++ +TP+ K++ + GV +G
Sbjct: 208 GKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSMDLLGKQLSLVSFGVIGVICLVG--- 264
Query: 59 FIIAFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVET 118
+ G WL+ + + VA +PEGL VTV L L RM+ K +V+ L +VET
Sbjct: 265 ----WFQGKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAIVRKLPSVET 320
Query: 119 LGSTSTICSDKTGTLTQNRMT 139
LGS + ICSDKTGTLT+N MT
Sbjct: 321 LGSVNVICSDKTGTLTKNHMT 341
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 114 bits (288), Expect = 5e-27
Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 47/305 (15%)
Query: 153 KGAPERILDKCSTIF-INGKEKVLDEEMREAFNNAYYELGGLGERVLGFCDLLLPADKFP 211
KGA E +L C NG+ + ++ ++ + L R + ++FP
Sbjct: 503 KGASEIVLKPCRKRLDSNGEATPISDDDKDRCADVIEPLASDALRTICLAYRDFAPEEFP 562
Query: 212 LGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKI 271
D PN G+ +G++ + DP R V +AV +C+ AGI V MVTGD+ TAK
Sbjct: 563 -----RKDYPN---KGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKA 614
Query: 272 IEADT---TEDQSGV-----------QYDRTSPGFKALARIATLCNRAEFKGGQDGAIAK 317
I + T + + D P + LAR + L + +D + +
Sbjct: 615 IARNCGILTFGGLAMEGKEFRSLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKD--MGE 672
Query: 318 SVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDVSKQAADMILLD 377
V + +G T + AL+L A V +MGI+G++V+K+A+D+ILLD
Sbjct: 673 VVAVTGDG--TNDAPALKL-------------ADV---GFSMGISGTEVAKEASDIILLD 714
Query: 378 DNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFI--LLDIPLPLGTVTILCI 435
DNFASIV V+ GR ++DN++K + + LT N+ ++ LTF+ + PL V +L +
Sbjct: 715 DNFASIVRAVKWGRNVYDNIRKFLQFQLTVNV--VAVILTFVGSCISSTSPLTAVQLLWV 772
Query: 436 DLGTD 440
+L D
Sbjct: 773 NLIMD 777
Score = 90.6 bits (225), Expect = 3e-19
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 35/236 (14%)
Query: 3 TSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIA 62
+ + +V + G N+ G++ TP+ +++ +I + V F++
Sbjct: 243 EGSGRMLVTAVGVNSFGGKLMMELRQAGEDSTPLQEKLSELAGLIGKFGMGSAVLLFLVL 302
Query: 63 FAL----------------GYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASK 106
+LD I + I+V VPEGL VT+ L + K+M
Sbjct: 303 SLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMMKD 362
Query: 107 NCLVKNLEAVETLGSTSTICSDKTGTLTQNRMT----TEDPNDPRHLEVMKGAPER---I 159
N LV++L A ET+GS + ICSDKTGTLTQN M+ +V++ P+ I
Sbjct: 363 NNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNI 422
Query: 160 LDKCSTIFIN-GKEKVLDEEMREAFNNAYYELGGLGER-VLGFCDLLL--PADKFP 211
L + I +N E+V+D + AF +G E +L F LLL +
Sbjct: 423 LVEG--ISLNSSSEEVVDRGGKRAF------IGSKTECALLDFGLLLLRDYQEVRA 470
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 100 bits (251), Expect = 3e-24
Identities = 37/117 (31%), Positives = 66/117 (56%)
Query: 2 VTSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFII 61
++ K +V + G++T +G+IA L + +TP+ + + I+ + + L + F+I
Sbjct: 106 LSGELKVIVTATGEDTELGKIARLVEEAKSAKTPLQRLLDKLAKILVPIVLALAILVFLI 165
Query: 62 AFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVET 118
F G +L+A++ + ++VA PE L V + L + A R+A K LVKNL A+ET
Sbjct: 166 WFFRGGDFLEALLRALAVLVAACPEALPLAVPLALAVGAGRLAKKGILVKNLSALET 222
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 103 bits (258), Expect = 3e-23
Identities = 76/321 (23%), Positives = 127/321 (39%), Gaps = 72/321 (22%)
Query: 6 AKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIA--- 62
A+ VV + G NT G+ A L +TG H I++ + +FL V ++
Sbjct: 169 AEAVVTATGMNTFFGKAAALVQSTETG-------SGHLQKILSKIGLFLIVLIGVLVLIE 221
Query: 63 -----FALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVE 117
F G + + + F + ++V +P + A ++V + + A +A K +V L A+E
Sbjct: 222 LVVLFFGRGESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIE 281
Query: 118 TLGSTSTICSDKTGTLTQNRMTTEDPN------DPRHLEVM-----KGAPERILDKCSTI 166
L +CSDKTGTLT N+++ ++ D + + + + +D
Sbjct: 282 ELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTA--- 338
Query: 167 FINGKEKVLDEEMR-------------EAFNNAYYELGGLGER----------VLGFCDL 203
+ G K L E + A E G+R +L CD
Sbjct: 339 -VLGSAKDLKEARDGYKVLEFVPFDPVDKRTEATVEDPETGKRFKVTKGAPQVILDLCD- 396
Query: 204 LLPADKFPLGFKFDCDEPNFPLTGMR--------------FVGLMSMIDPPRAAVPDAVA 249
+K + K + G R F+GL+ + DPPR + +
Sbjct: 397 ----NKKEIEEKVEEKVDELASRGYRALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIE 452
Query: 250 KCRSAGIKVIMVTGDHPITAK 270
+ R G++V MVTGDH AK
Sbjct: 453 RARHLGVEVKMVTGDHLAIAK 473
Score = 31.9 bits (73), Expect = 0.88
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 360 GIA---GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 409
GIA +D ++ AAD++L + + IV + E R IF +K + Y + I
Sbjct: 555 GIAVAGATDAARSAADIVLTEPGLSVIVDAILESRKIFQRMKSYVIYRIAETI 607
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 88.4 bits (220), Expect = 1e-18
Identities = 94/455 (20%), Positives = 156/455 (34%), Gaps = 136/455 (29%)
Query: 14 GDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFII-AFALGYHWLDA 72
G +T + RI L + + PI + V + + F + G W A
Sbjct: 296 GADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGGGDWETA 355
Query: 73 VIFLIGIIVANVPEGL-LATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDKTG 131
+ + ++V P L LAT T L R A + L+K EA+E L T+ DKTG
Sbjct: 356 LYRALAVLVIACPCALGLATPTAILVGIG-RAARRGILIKGGEALERLAKVDTVVFDKTG 414
Query: 132 TLTQNRMTTEDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMR------EAFNN 185
TLT+ + D + + G + +L + + E +A
Sbjct: 415 TLTEGKPEVTD------VVALDGDEDELLALAAAL-----------EQHSEHPLAKAIVK 457
Query: 186 AYYELGGL---------GERVLGFCD---LLLPADKFPLGFKFDCDEPNFPLTGMRFVGL 233
A E G G V D +L+ + D + + + G
Sbjct: 458 AAAERGLPDVEDFEEIPGRGVEAEVDGERVLVGNARLLGEEGIDLPLLSERIEALESEGK 517
Query: 234 MSMI--------------DPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTED 279
+ D R +A+A ++ GIKV+M+TGD+ TA+
Sbjct: 518 TVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAE--------- 568
Query: 280 QSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIP 339
AIAK +GI + V
Sbjct: 569 ----------------------------------AIAKELGI-----DEV---------- 579
Query: 340 VSEVNPREAKAAVVH------GSVAM----------------GIA---GSDVSKQAADMI 374
+E+ P E KA +V VAM GIA G+DV+ +AAD++
Sbjct: 580 RAELLP-EDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVV 638
Query: 375 LLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 409
L+ D+ +++ ++ R +K+++ + N
Sbjct: 639 LMRDDLSAVPEAIDLSRATRRIIKQNLFWAFGYNA 673
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 87.0 bits (216), Expect = 3e-18
Identities = 94/445 (21%), Positives = 169/445 (37%), Gaps = 68/445 (15%)
Query: 9 VVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFALGYH 68
VV ++ + +I L + + + I F T V + + ++ +++ L
Sbjct: 134 VVTKLPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLK-R 192
Query: 69 WLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSD 128
W V + ++V P L+ + A L+K A+E L T+ D
Sbjct: 193 WPFWVYRALVLLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFD 252
Query: 129 KTGTLTQNRMTTEDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYY 188
KTGTLT R D EV++ A ++ S+ + ++D + +
Sbjct: 253 KTGTLTTGRPK---VVDVVPAEVLRLAAA--AEQASSHPL--ARAIVDYARKRENVESVE 305
Query: 189 ELGGLGERVLGFCD---LLLPADKFPLGFKFDCDEPNFP-----LTGMRFVGLMSMIDPP 240
E+ G G V D + + + E ++G + + D P
Sbjct: 306 EVPGEG--VRAVVDGGEVRIGNPRSLEAAVGARPESAGKTIVHVARDGTYLGYILLSDEP 363
Query: 241 RAAVPDAVAKCRSAGI-KVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIA 299
R +A+A+ ++ GI KV+M+TGD A+ + + D+ V + P K L +
Sbjct: 364 RPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE--VHAE-LLPEDK-LEIVK 419
Query: 300 TLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAM 359
L + V ++ +G +N A AA G +AM
Sbjct: 420 ELREKYGP-----------VAMVGDG-----------------INDAPALAAADVG-IAM 450
Query: 360 GIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFI 419
G +GSDV+ + AD++LL+D+ + + + R +K+++ L L I
Sbjct: 451 GASGSDVAIETADVVLLNDDLSRLPQAIRLARRTRRIVKQNVVIALGII-------LLLI 503
Query: 420 LLD----IPLPLGT-----VTILCI 435
LL +PL L T+L I
Sbjct: 504 LLALFGVLPLWLAVLGHEGSTVLVI 528
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 80.4 bits (199), Expect = 5e-16
Identities = 88/390 (22%), Positives = 152/390 (38%), Gaps = 81/390 (20%)
Query: 50 VAVFLGVSFFIIAFALGYHWLDAVIFLIGIIVANVPEGL-LATVTVCLTLTAKRMASKNC 108
V + + + F+I LG ++ A+ + +++ P L LAT TV T A
Sbjct: 212 VVIAIALITFVIWLILGADFVFALEVAVTVLIIACPCALGLATPTVIAVATG-LAAKNGV 270
Query: 109 LVKNLEAVETLGSTSTICSDKTGTLTQNRMT---TEDPNDPRHLEVMK--GAPERILDKC 163
L+K+ +A+E + T+ DKTGTLTQ + T + E++ A E +
Sbjct: 271 LIKDGDALERAANIDTVVFDKTGTLTQGKPTVTDVHVFGESDRDELLALAAALEAGSEHP 330
Query: 164 STIFINGKEKVLDEEMREAFNNAYYELGGLGERV--------LGFCDLLLPADKFPLGFK 215
I K + + + + + G+G LG LL G K
Sbjct: 331 LAKAIVSYAKAKGITLSQVSD--FKAIPGIGVEGTVEGHTIQLGNEKLLG-----ENGLK 383
Query: 216 FD------------CDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTG 263
D N L G+ + D + + + + GI+ +M+TG
Sbjct: 384 TDGEVEEGGGTTSVLVAVNGELAGVLALA-----DQLKPEAKEVIQALKRRGIEPVMLTG 438
Query: 264 DHPITAKII--EADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGI 321
D+ TAK + E ++ V P KA A I L + G + VG
Sbjct: 439 DNRKTAKAVAKELGIENVRAEV-----LPDDKA-ALIKKL--------QEKGKVVAMVG- 483
Query: 322 ISEGNETVEDIALRLNIPVSEVN--PREAKAAVVHGSVAMGIAGSDVSKQAADMILLDDN 379
+G +N P A+A V +A+G AG+DV+ +AAD++LL ++
Sbjct: 484 --DG-----------------INDAPALAQADV---GIAIG-AGTDVAIEAADVVLLRND 520
Query: 380 FASIVTGVEEGRLIFDNLKKSIAYTLTSNI 409
+ T ++ R +K+++ + N+
Sbjct: 521 LNDVATAIDLSRKTLRRIKQNLLWAFGYNV 550
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 77.4 bits (191), Expect = 5e-15
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 2 VTSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHF-IHIITGVAVFLGVSFFI 60
V+ TA+ VVI+ G NT G++AG S D+ + I +I + V V I
Sbjct: 251 VSGTAQAVVIATGANTWFGQLAGRVSEQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLI 310
Query: 61 IAFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETLG 120
+ G W +A +F + + V PE L VT L A +++ + +VK L+A++ G
Sbjct: 311 NGYTKG-DWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKRLDAIQNFG 369
Query: 121 STSTICSDKTGTLTQNRMTTEDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMR 180
+ +C+DKTGTLTQ+++ E H ++ ER+L
Sbjct: 370 AMDILCTDKTGTLTQDKIVLE-----NHTDISGKTSERVL-------------------H 405
Query: 181 EAFNNAYYELG 191
A+ N++Y+ G
Sbjct: 406 SAWLNSHYQTG 416
Score = 73.2 bits (180), Expect = 1e-13
Identities = 86/322 (26%), Positives = 136/322 (42%), Gaps = 75/322 (23%)
Query: 137 RMTT--EDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLG 194
RM+ + + H + KGA E IL+ CS + NG+ LD+ M L G
Sbjct: 455 RMSVVVAENTEH-HQLICKGALEEILNVCSQVRHNGEIVPLDDIMLRRIKRVTDTLNRQG 513
Query: 195 ERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSA 254
RV+ LPA + DE + L G ++ +DPP+ A+ +++
Sbjct: 514 LRVVAVATKYLPAREGDYQR---ADESDLIL-----EGYIAFLDPPKETTAPALKALKAS 565
Query: 255 GIKVIMVTGDHP-ITAKI-----IEADT----------TEDQSGVQYDRT------SPGF 292
G+ V ++TGD + AK+ ++A ++D+ +RT +P
Sbjct: 566 GVTVKILTGDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMH 625
Query: 293 KALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDI-ALRLNIPVSEVNPREAKAA 351
K RI TL + E VG + +G + D ALR AA
Sbjct: 626 K--ERIVTLL-KRE---------GHVVGFMGDG---INDAPALR--------------AA 656
Query: 352 VVHGSVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPE 411
+ SV + D++++AAD+ILL+ + + GV EGR F N+ K I T +SN
Sbjct: 657 DIGISVDGAV---DIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGN 713
Query: 412 I------SPFLTFILLDIPLPL 427
+ S FL F+ + LPL
Sbjct: 714 VFSVLVASAFLPFLPM---LPL 732
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 74.5 bits (183), Expect = 5e-14
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 1 MVTSTAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHF-IHIITGVAVFLGVSFF 59
+++ A+ VV++ G +T G +A A+ G+T K + +I + V + V
Sbjct: 216 VLSGHAQAVVLATGSSTWFGSLAIAATE-RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLM 274
Query: 60 IIAFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETL 119
I G WL+A +F + + V PE L V+ L A M+ K +VK L A++
Sbjct: 275 INGLMKG-DWLEAFLFALAVAVGLTPEMLPMIVSSNLAKGAINMSKKKVIVKELSAIQNF 333
Query: 120 GSTSTICSDKTGTLTQNRMTTEDPNDPRHLEVMKGAPERILDKCSTI---FINGKEKVLD 176
G+ +C+DKTGTLTQ+++ E +H++ ER+L K + + F G + VLD
Sbjct: 334 GAMDILCTDKTGTLTQDKIELE-----KHIDSSGETSERVL-KMAWLNSYFQTGWKNVLD 387
Score = 68.0 bits (166), Expect = 6e-12
Identities = 62/285 (21%), Positives = 107/285 (37%), Gaps = 25/285 (8%)
Query: 141 EDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGF 200
+ KGA E +L C+ G L E + + E+ G RV+
Sbjct: 427 NRAEV--TRLICKGAVEEMLTVCTHKRFGGAVVTLSESEKSELQDMTAEMNRQGIRVIAV 484
Query: 201 CDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIM 260
L + DE + G + +DPP+ + +A+A GI V +
Sbjct: 485 ATKTLKVGEADFTKT---DEEQLIIEGF-----LGFLDPPKESTKEAIAALFKNGINVKV 536
Query: 261 VTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVG 320
+TGD+ I I + D + L F ++ +G
Sbjct: 537 LTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIG 596
Query: 321 IISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDVSKQAADMILLDDNF 380
++ + TV + +N + + A V SV +D++K+A+D+ILL+ +
Sbjct: 597 LLKKAGHTVGFLGDGIN------DAPALRKADVGISVD---TAADIAKEASDIILLEKSL 647
Query: 381 ASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI------SPFLTFI 419
+ GV EGR F N+ K + T +SN + S F+ F+
Sbjct: 648 MVLEEGVIEGRNTFGNILKYLKMTASSNFGNVFSVLVASAFIPFL 692
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 71.5 bits (176), Expect = 3e-13
Identities = 96/435 (22%), Positives = 172/435 (39%), Gaps = 61/435 (14%)
Query: 14 GDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFALGYHWLDAV 73
G+++ + +I L + + PI + + + + F++ ALG A+
Sbjct: 140 GEDSTLAQIVELVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGALG--AL 197
Query: 74 IFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDKT--- 130
+ ++V P L V + + A + L+K +A+E L T+ DKT
Sbjct: 198 YRALAVLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTL 257
Query: 131 --GTLTQNRMTTEDPNDPRHLEVMK--GAPERILDKCSTIFINGKEKVLDEEMREAFNNA 186
G T + D E++ A E+ I K E+ + +
Sbjct: 258 TTGKPTVVDIEPLDDASISEEELLALAAALEQSSSHPLARAIVRYAKKRGLELPKQEDVE 317
Query: 187 YY-------ELGGLGERVLGFCDLLLPADKFPLGFKFDCDEPN-------FPLTGMRFVG 232
+ G E +G L A + +E F +G
Sbjct: 318 EVPGKGVEATVDGGEEVRIGNPRFLELAIEPISASPDLLNEGESQGKTVVFVAVDGELLG 377
Query: 233 LMSMIDPPRAAVPDAVAK-CRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPG 291
++++ D R +A+A R+ GIK++M+TGD+ A+ + A+ D+ + P
Sbjct: 378 VIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEV---HAELLPE 434
Query: 292 FKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVED-IALRLNIPVSEVNPREAKA 350
K LA + L Q+ V ++ +G + D AL A A
Sbjct: 435 DK-LAIVKEL---------QEEG--GVVAMVGDG---INDAPAL-------------AAA 466
Query: 351 AVVHGSVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIP 410
V +AMG AGSDV+ +AAD++LL+D+ +S+ T ++ R +K+++A+ L N+
Sbjct: 467 DV---GIAMG-AGSDVAIEAADIVLLNDDLSSLPTAIDLSRKTRRIIKQNLAWALGYNLV 522
Query: 411 EISPFLTFILLDIPL 425
I P LL + L
Sbjct: 523 AI-PLAAGGLLPLWL 536
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 67.4 bits (165), Expect = 8e-12
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 2 VTSTAKGVVISCGDNTVMGRIAGLASG------LDTGETPIAKEIHHFIHIITGVAVFLG 55
V+ TA VV++ G T G +A G D G ++ + F+ V +
Sbjct: 250 VSGTATAVVVATGSRTYFGSLAKSIVGTRAQTAFDRGVNSVSWLLIRFM------LVMVP 303
Query: 56 VSFFIIAFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEA 115
V I F G WL+A++F + + V PE L V+ L A MA + +VK L A
Sbjct: 304 VVLLINGFTKG-DWLEALLFALAVAVGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNA 362
Query: 116 VETLGSTSTICSDKTGTLTQNRMTTEDPNDPRHLEVMKGAPERIL 160
++ G+ +C+DKTGTLTQ+R+ E HL+V ER+L
Sbjct: 363 IQNFGAMDVLCTDKTGTLTQDRIILE-----HHLDVSGRKDERVL 402
Score = 60.0 bits (146), Expect = 2e-09
Identities = 76/283 (26%), Positives = 118/283 (41%), Gaps = 57/283 (20%)
Query: 147 RHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAF---NNAYYELGGLGERVLGFCDL 203
+HL + KGA E +L + + + LDE RE AY G RVL
Sbjct: 464 QHLLICKGAVEEMLAVATHVRDGDTVRPLDEARRERLLALAEAYNADG---FRVLLVATR 520
Query: 204 LLPADKFPLGFKFDCDEPNFPLT-----GMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKV 258
+P E + + G ++ +DPP+ + A+A R G+ V
Sbjct: 521 EIPGG-----------ESRAQYSTADERDLVIRGFLTFLDPPKESAAPAIAALRENGVAV 569
Query: 259 IMVTGDHPI-TAKIIEA---DTTEDQSGVQYDRTSPGFKALARIATLCNR-AEFKGGQDG 313
++TGD+PI TAKI + E G + + ALAR A+ Q
Sbjct: 570 KVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDD--AALAREVEERTVFAKLTPLQKS 627
Query: 314 AIAK-------SVGIISEGNETVEDI-ALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSD 365
+ K +VG + +G + D ALR A V SV +G+D
Sbjct: 628 RVLKALQANGHTVGFLGDG---INDAPALR--------------DADVGISVD---SGAD 667
Query: 366 VSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSN 408
++K++AD+ILL+ + + GV +GR F N+ K + T +SN
Sbjct: 668 IAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSN 710
>gnl|CDD|222006 pfam13246, Hydrolase_like2, Putative hydrolase of sodium-potassium
ATPase alpha subunit. This is a putative hydrolase of
the sodium-potassium ATPase alpha subunit.
Length = 91
Score = 47.2 bits (113), Expect = 6e-07
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 137 RMTT--EDPNDPRHLEVMKGAPERILDKCSTI 166
RM+T + +D + +KGAPERIL++CSTI
Sbjct: 60 RMSTVHKLEDDDGYRLFVKGAPERILERCSTI 91
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 44.3 bits (104), Expect = 1e-04
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 33 ETPIAKEIHHFIHIITGVAVFLGVSFFIIAFALGYHWLDAVIFLIGIIVANVPE---GLL 89
+TP EI F ++T +FL V + A ++ ++ LI + V +P GLL
Sbjct: 211 KTP--NEIALFTLLMTLTIIFLVVILTMYPLAKFLNFNLSIAMLIALAVCLIPTTIGGLL 268
Query: 90 ATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQ-NRMTTE 141
+ + + R+ N L K+ +VET G + + DKTGT+T NRM
Sbjct: 269 SAIGIA---GMDRVTQFNILAKSGRSVETCGDVNVLILDKTGTITYGNRMADA 318
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 44.3 bits (105), Expect = 1e-04
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 38/173 (21%)
Query: 231 VGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKII--EADTTEDQSGVQYDRT 288
L+++ DP R+ A+ + AG +++M+TGD+P TA I EA E +GV D
Sbjct: 642 AALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGK 701
Query: 289 SPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREA 348
+ K L + + V ++ +G + D P A
Sbjct: 702 AEAIKRLQ-----------------SQGRQVAMVGDG---INDA------------PALA 729
Query: 349 KAAVVHGSVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSI 401
+A V +AMG GSDV+ + A + L+ + + + R N+K+++
Sbjct: 730 QADV---GIAMG-GGSDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNL 778
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 42.0 bits (99), Expect = 8e-04
Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 36/168 (21%)
Query: 142 DPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGFC 201
++ +KGAPE I CS E + + G RVL
Sbjct: 573 TNDERSPDAFVKGAPETIQSLCSP-----------ETVPSDYQEVLKSYTREGYRVLALA 621
Query: 202 DLLLPA---DKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKV 258
LP K D E N + F+G + +P + + + + + A I+
Sbjct: 622 YKELPKLTLQKA-QDLSRDAVESN-----LTFLGFIVFENPLKPDTKEVIKELKRASIRT 675
Query: 259 IMVTGDHPITA----------------KIIEADTTEDQSGVQYDRTSP 290
+M+TGD+P+TA + EA+ E Q
Sbjct: 676 VMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVI 723
Score = 38.1 bits (89), Expect = 0.011
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 12/139 (8%)
Query: 6 AKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFAL 65
+V+ G +T G++ + S L F I+ +AV + F L
Sbjct: 332 CLAIVVRTGFSTSKGQL--VRSILYPKPRVFKFYKDSFKFILF-LAVLALIGFIYTIIEL 388
Query: 66 GYHWLDAVIFL------IGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETL 119
D + II VP L A +++ + + R+ K + +
Sbjct: 389 ---IKDGRPLGKIILRSLDIITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRINFA 445
Query: 120 GSTSTICSDKTGTLTQNRM 138
G C DKTGTLT++ +
Sbjct: 446 GKIDVCCFDKTGTLTEDGL 464
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 41.6 bits (98), Expect = 8e-04
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 108 CLVKNLEAVETLGSTSTICSDKTGTLTQNRMT 139
V+ E LG I SDKTGTLTQN M
Sbjct: 345 ASVRTSNLNEELGQVEYIFSDKTGTLTQNIME 376
Score = 33.9 bits (78), Expect = 0.25
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 226 TGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITA 269
+ +G ++ D + VP+ + R AGIK+ ++TGD TA
Sbjct: 618 KDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETA 661
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 37.6 bits (87), Expect = 0.006
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 24/146 (16%)
Query: 124 TICSDKTGTLTQNRMTTEDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAF 183
+ D GTLT + E +L+ + + + + +E
Sbjct: 3 AVVFDLDGTLTDGEPVVPEA-------------EALLEAAAALGVAIVIAAGENLTKEGR 49
Query: 184 NNAYYELGGLGERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAA 243
L + LL A + +GL+++ DP
Sbjct: 50 EELVRRLLLRALAGEELLEELLRAGATVVAVLDL-----------VVLGLIALTDPLYPG 98
Query: 244 VPDAVAKCRSAGIKVIMVTGDHPITA 269
+A+ + + AGIK+ ++TGD+ +TA
Sbjct: 99 AREALKELKEAGIKLAILTGDNRLTA 124
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 38.0 bits (89), Expect = 0.011
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 21 RIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFALGYHWLDA----VIFL 76
R+ L G + +TP EI I + +FL + FA + V L
Sbjct: 199 RMIALVEGAERQKTP--NEIALTILLSGLTLIFLLAVATLYPFA---IYSGGGAASVTVL 253
Query: 77 IGIIVANVPE---GLLATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDKTGTL 133
+ ++V +P GLL+ + + R+ N + + AVE G T+ DKTGT+
Sbjct: 254 VALLVCLIPTTIGGLLSAIGIA---GMDRVTQFNVIATSGRAVEAAGDVDTLLLDKTGTI 310
Query: 134 T-QNRMTTE 141
T NR +E
Sbjct: 311 TLGNRQASE 319
Score = 35.7 bits (83), Expect = 0.057
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 229 RFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEA 274
R +G++ + D + + + A+ R GIK +M+TGD+P+TA I A
Sbjct: 437 RILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAA 482
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 37.7 bits (88), Expect = 0.014
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 90 ATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQ 135
A +T L A+R A L+K A+E LG +T+ DKTGTLT+
Sbjct: 408 AAITSGLAAAARRGA----LIKGGAALEQLGRVTTVAFDKTGTLTE 449
Score = 37.7 bits (88), Expect = 0.015
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 229 RFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKII 272
+GL+++ D RA A+++ ++ GIK +M+TGD+P A I
Sbjct: 558 DVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAI 601
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 37.2 bits (86), Expect = 0.021
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 42/169 (24%)
Query: 227 GMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYD 286
R G++ + D + + + A+ R GIK IM+TGD+ +TA I A+ D
Sbjct: 434 DNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD------- 486
Query: 287 RTSPGFKALA----RIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSE 342
F A A +IA + Q+ A K V + +G
Sbjct: 487 ----DFIAEATPEDKIALI--------RQEQAEGKLVAMTGDGTNDA------------- 521
Query: 343 VNPREAKAAVVHGSVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGR 391
P A+A V VAM +G+ +K+AA+M+ LD + ++ V G+
Sbjct: 522 --PALAQADV---GVAMN-SGTQAAKEAANMVDLDSDPTKLIEVVHIGK 564
Score = 36.0 bits (83), Expect = 0.048
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 17 TVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFALGYHWLDAVI-- 74
T + R+ L G +TP EI I +I VFL V+ + FA + I
Sbjct: 196 TFLDRMIALVEGAQRRKTP--NEIALTILLIALTLVFLLVTATLWPFA---AYGGNAISV 250
Query: 75 -FLIGIIVANVPE---GLLATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDKT 130
L+ ++V +P GLL+ + + R+ N + + AVE G T+ DKT
Sbjct: 251 TVLVALLVCLIPTTIGGLLSAIGIA---GMDRVLGFNVIATSGRAVEACGDVDTLLLDKT 307
Query: 131 GTLT-QNRMTTE 141
GT+T NR+ +E
Sbjct: 308 GTITLGNRLASE 319
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 36.3 bits (85), Expect = 0.036
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 252 RSAGIKVIMVTGDHPITAKIIEA 274
R GIK +M+TGD+P+TA I A
Sbjct: 458 RKMGIKTVMITGDNPLTAAAIAA 480
Score = 33.2 bits (77), Expect = 0.32
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 102 RMASKNCLVKNLEAVETLGSTSTICSDKTGTLT-QNRMTTE 141
R+ N + + AVE G T+ DKTGT+T NR +E
Sbjct: 278 RVLQANVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASE 318
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 34.9 bits (81), Expect = 0.072
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 36 IAKEIHHFIHIITGVAVFLGVSFFIIAFALGYHWLDAVI-FLIGIIV 81
IA +HH ++T +AV +G ++ LG+ WLD + LI + +
Sbjct: 150 IADALHHRSDVLTSLAVLVG----LLGSLLGWPWLDPLAALLISLYI 192
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 34.9 bits (80), Expect = 0.11
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 226 TGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITA 269
+ +G ++ D + VP+A+ R+AGIKV ++TGD TA
Sbjct: 713 NNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETA 756
Score = 32.6 bits (74), Expect = 0.54
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 117 ETLGSTSTICSDKTGTLTQNRM 138
E LG + SDKTGTLT+N+M
Sbjct: 448 EDLGQIKYVFSDKTGTLTENKM 469
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 34.5 bits (80), Expect = 0.16
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 41 HHFIHIITGVAVFLGVSF----FIIAFALGYHWLDAVIFL 76
F I A+ ++ F+I WLDA+I L
Sbjct: 113 KRFKKISKWSALLFSTAYALSGFVIYNRFNLMWLDALILL 152
>gnl|CDD|182523 PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase;
Provisional.
Length = 272
Score = 32.7 bits (75), Expect = 0.39
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 246 DAVAKCRSAGIKVIMVTGDH 265
+A+A+ R AG KVI+VTG H
Sbjct: 27 EALARAREAGYKVIIVTGRH 46
>gnl|CDD|234176 TIGR03351, PhnX-like, phosphonatase-like hydrolase. This clade of
sequences are the closest homologs to the PhnX enzyme,
phosphonoacetaldehyde (Pald) hydrolase (phosphonatase,
TIGR01422). This phosphonatase-like enzyme and PhnX
itself are members of the haloacid dehalogenase (HAD)
superfamily (pfam00702) having a a number of distinctive
features that set them apart from typical HAD enzymes.
The typical HAD N-terminal motif DxDx(T/V) here is DxAGT
and the usual conserved lysine prior to the C-terminal
motif is instead an arginine. Also distinctive of
phosphonatase, and particular to its bi-catalytic
mechanism is a conserved lysine in the variable "cap"
domain. This lysine forms a Schiff base with the
aldehyde of phosphonoacetaldehyde, providing, through
the resulting positive charge, a polarization of the C-P
bond necesary for cleavage as well as a route to the
initial product of cleavage, an ene-amine. The
conservation of these elements in this
phosphonatase-like enzyme suggests that the substrate is
also, like Pald, a 2-oxo-ethylphosphonate. Despite this,
the genomic context of members of this family are quite
distinct from PhnX, which is almost invariably
associated with the 2-aminoethylphosphonate transaminase
PhnW (TIGR02326), the source of the substrate Pald.
Members of this clade are never associated with PhnW,
but rather associate with families of FAD-dependent
oxidoreductases related to deaminating amino acid
oxidases (pfam01266) as well as zinc-dependent
dehydrogenases (pfam00107). Notably, family members from
Arthrobacter aurescens TC1 and Nocardia farcinica IFM
10152 are adjacent to the PhnCDE ABC cassette
phosphonates transporter (GenProp0236) typically found
in association with the phosphonates C-P lyase system
(GenProp0232). These observations suggest two
possibilities. First, the substrate for this enzyme
family is also Pald, the non-association with PhnW not
withstanding. Alternatively, the substrate is something
very closely related such as
hydroxyphosphonoacetaldehyde (Hpald). Hpald could come
from oxidative deamination of
1-hydroxy-2-aminoethylphosphonate (HAEP) by the
associated oxidase. HAEP would not be a substrate for
PhnW due to its high specificity for AEP. HAEP has been
shown to be a constituent of the sphingophosphonolipid
of Bacteriovorax stolpii, and presumably has other
natural sources. If Hpald is the substrate, the product
would be glycoaldehyde (hydroxyacetaldehyde), and the
associated alcohol dehydrogenase may serve to convert
this to glycol.
Length = 220
Score = 32.1 bits (73), Expect = 0.51
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 239 PPRA--AVPDAVAKCRSAGIKVIMVTG-DHPITAKIIEA 274
PP A +A RS+GIKV + TG D +++E
Sbjct: 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEK 123
>gnl|CDD|216313 pfam01127, Sdh_cyt, Succinate dehydrogenase/Fumarate reductase
transmembrane subunit. This family includes a
transmembrane protein from both the Succinate
dehydrogenase and Fumarate reductase complexes.
Length = 123
Score = 30.0 bits (68), Expect = 0.91
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 40 IHHFIHIITGVAVFLGVSFFIIAFAL 65
I +H ITGVA+ + + ++ L
Sbjct: 21 ILSILHRITGVALAVLLIHLLLWLLL 46
>gnl|CDD|212801 cd11867, hSH3_ADAP, Helically extended Src Homology 3 domain of
Adhesion and Degranulation-promoting Adaptor Protein.
ADAP, also called Fyn T-binding protein (FYB) or
SLP-76-associated protein (SLAP), is expressed mainly in
hematopoietic cells but not in B cells. It is required
for the proliferation of mature T-cells and plays an
important role in T-cell activation, TCR-induced
integrin clustering, and T-cell adhesion. ADAP has been
shown to bind many partners including SLP-76, Fyn, Src,
SKAP1, SKAP2, dynein, Ena/VASP, Carma1, among others. It
is connected to cytoskeleton via its binding to Ena and
VASP, which impacts actin cytoskeletal remodeling upon
TCR ligation. The SH3 domain of ADAP adopts an altered
fold referred to as a helically extended SH3 (hSH3)
domain characterized by clusters of positive charges.
The hSH3 domain can no longer bind conventional
proline-rich peptides, instead, it functions as a novel
lipid interaction domain and can bind acidic lipids such
as phosphatidylserine, phosphatidylinositol,
phosphatidic acid, and polyphosphoinositides.
Length = 77
Score = 28.6 bits (64), Expect = 1.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 88 LLATVTVCLTLTAKRMASKNCLVK---NLEAVETLGSTSTICSDKTG 131
+L + TV TLT K+ SK+ VK +LE ++ T +C ++ G
Sbjct: 19 VLYSTTVLQTLTIKKFGSKDLQVKPGESLEVIQHTDDTKVLCRNEEG 65
>gnl|CDD|234202 TIGR03417, chol_sulfatase, choline-sulfatase.
Length = 500
Score = 30.8 bits (70), Expect = 1.7
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 201 CDLLLPADKFPLGFKFD---------CDEPNFPLTGMR-------FVGLMSMIDPPRAAV 244
C++L+P P + D CD NFP+T + + G +S ID +
Sbjct: 211 CEILMPEVAIPYA-EQDPHSQRLLDACDLRNFPITDEQIRRARRAYFGAISYIDDKIGEL 269
Query: 245 PDAVAKCRSAGIKVIMVTGDH 265
D + + R A +I+ T DH
Sbjct: 270 LDTLEETRQADDTIIVFTSDH 290
>gnl|CDD|100119 cd06171, Sigma70_r4, Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in
Escherichia coli (Ec) sigma70, the main housekeeping
sigma, and related sigma-factors (SFs). A SF is a
dissociable subunit of RNA polymerase, it directs
bacterial or plastid core RNA polymerase to specific
promoter elements located upstream of transcription
initiation points. The SR4 of Ec sigma70 and other
essential primary SFs contact promoter sequences located
35 base-pairs upstream of the initiation point,
recognizing a 6-base-pair -35 consensus TTGACA. Sigma70
related SFs also include SFs which are dispensable for
bacterial cell growth for example Ec sigmaS, SFs which
activate regulons in response to a specific signal for
example heat-shock Ec sigmaH, and a group of SFs which
includes the extracytoplasmic function (ECF) SFs and is
typified by Ec sigmaE which contains SR2 and -4 only.
ECF SFs direct the transcription of genes that regulate
various responses including periplasmic stress and
pathogenesis. Ec sigmaE SR4 also contacts the -35
element, but recognizes a different consensus (a
7-base-pair GGAACTT). Plant SFs recognize sigma70 type
promoters and direct transcription of the major plastid
RNA polymerase, plastid-encoded RNA polymerase (PEP).
Length = 55
Score = 27.8 bits (63), Expect = 1.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 328 TVEDIALRLNIPVSEVNPREAKA 350
+ E+IA L I S V R +A
Sbjct: 28 SYEEIAEILGISRSTVRQRLHRA 50
>gnl|CDD|224104 COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].
Length = 234
Score = 29.9 bits (68), Expect = 2.3
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 34 TPIAKEIHHFIHIITGVAVFLGVSFFIIAFALGYHWLDAVIFLI 77
P K ++ ++IT + +FLG I AL + A++ ++
Sbjct: 2 VPRIKRLYLLPNLITALGLFLG--LLSIVAALEGRFEAALLLIL 43
>gnl|CDD|239579 cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR)
Type C subfamily, Succinate dehydrogenase C (SdhC)
subunit; composed of bacterial SdhC and eukaryotic
large cytochrome b binding (CybL) proteins. SQR
catalyzes the oxidation of succinate to fumarate
coupled to the reduction of quinone to quinol. Members
of this family reduce high potential quinones such as
ubiquinone. SQR is also called succinate dehydrogenase
or Complex II, and is part of the citric acid cycle and
the aerobic respiratory chain. SQR is composed of a
flavoprotein catalytic subunit, an iron-sulfur protein
and one or two hydrophobic transmembrane subunits.
Proteins in this subfamily are classified as Type C
SQRs because they contain two transmembrane subunits
and one heme group. The heme and quinone binding sites
reside in the transmembrane subunits. The SdhC or CybL
protein is one of the two transmembrane subunits of
bacterial and eukaryotic SQRs. The two-electron
oxidation of succinate in the flavoprotein active site
is coupled to the two-electron reduction of quinone in
the membrane anchor subunits via electron transport
through FAD and three iron-sulfur centers. The
reversible reduction of quinone is an essential feature
of respiration, allowing transfer of electrons between
respiratory complexes.
Length = 117
Score = 28.7 bits (65), Expect = 2.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 45 HIITGVAVFLGVSFFIIAFAL 65
H ITGVA+FLG+ +
Sbjct: 22 HRITGVALFLGLPLLLWWLLA 42
>gnl|CDD|163267 TIGR03441, urea_trans_yut, urea transporter, Yersinia type.
Members of this protein family are bacterial urea
transporters, found not only is species that contain
urease, but adjacent to the urease operon. It was
characterized in Yersinia pseudotuberculosis. Members
are homologous to eukaryotic members of solute carrier
family 14, a family that includes urea transporters, and
to bacterial proteins in species with no detectable urea
degradation system [Transport and binding proteins,
Other].
Length = 292
Score = 29.6 bits (67), Expect = 3.9
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 35 PIAKEIHHFIHIITGVAVFLGVS-FFIIAFALGYHWLDAVIFLIGIIVANVPEGLLATVT 93
P+A + VA F G S F++ A+ V+ LIGI++A+ ++A +
Sbjct: 152 PVAFGGPARENFF--VAFFKGFSQVFLLDSAIA-----GVLILIGILIASRKAAIMALIG 204
Query: 94 VCLTLTA 100
+++ A
Sbjct: 205 ALISILA 211
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 29.7 bits (67), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 246 DAVAKCRSAGIKVIMVTGDHPITAKIIEA 274
D V + +AGIK+I+ G+ + I EA
Sbjct: 110 DIVYRIEAAGIKMIVCIGEDGVPEHIDEA 138
>gnl|CDD|221781 pfam12805, FUSC-like, FUSC-like inner membrane protein yccS.
This family has similarities to the fusaric acid
resistance protein family. The proteins are lodged in
the inner membrane.
Length = 284
Score = 29.1 bits (66), Expect = 4.8
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 46 IITGVAVFLGVSFFIIAFALGYHWLDAVI-----FLIGIIVA 82
++T + + S + Y WL A+ FL ++ A
Sbjct: 3 LLTLICFAI--SSLSVQLLFPYPWLFALGLALSTFLFIMLGA 42
>gnl|CDD|223505 COG0428, COG0428, Predicted divalent heavy-metal cations
transporter [Inorganic ion transport and metabolism].
Length = 266
Score = 29.2 bits (66), Expect = 4.9
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 48 TGVAVFLGVSF------FIIAFALGYHWLDAVIFLIGIIVANVPEGL 88
G + L +S I A + + + I + N+PEGL
Sbjct: 120 RGFLLALAISLHNFPEGLAIGVAFLSNPSLGIALALAIAIHNIPEGL 166
>gnl|CDD|223089 COG0010, SpeB, Arginase/agmatinase/formimionoglutamate hydrolase,
arginase family [Amino acid transport and metabolism].
Length = 305
Score = 28.9 bits (65), Expect = 5.9
Identities = 49/227 (21%), Positives = 72/227 (31%), Gaps = 46/227 (20%)
Query: 218 CDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEA--- 274
D + L G + A+ +AVA+ SAG I++ GDH IT + A
Sbjct: 72 ADLGDIELNGGDLEDAV-------DAIEEAVAELLSAGAFPIVLGGDHSITLGTVRALAR 124
Query: 275 ---------------DTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSV 319
D SG +P L R G ++ +
Sbjct: 125 KYGGPLGVIWIDAHADLRTPYSGSGNSHGTP----LRRALEEG--LIDGGPENVVQ---I 175
Query: 320 GIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGSVAMGIA-GSDVSKQAA---DMIL 375
GI S E +A I V + R+ + + I D+ +
Sbjct: 176 GIRSVDPEERAAVARERGIRV--LTARDVDELGLVDVIEEAIDELKGDGDPVYLSIDLDV 233
Query: 376 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSN------IPEISPFL 416
LD FA V E G L F L + L S + E++P L
Sbjct: 234 LDPAFAPGVGTPEPGGLTFRELLDLLERLLKSGKVVGFDVVEVNPAL 280
>gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.
Length = 176
Score = 28.5 bits (64), Expect = 6.1
Identities = 6/42 (14%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 234 MSMIDPPRAAVPDAVAKCRSAGIKVIMVT-GDHPITAKIIEA 274
+ P V + + + ++ G+K+++++ G +++E
Sbjct: 72 LESRLEPFPDVVELLRRLKAKGVKLVILSNGSREAVERLLEK 113
>gnl|CDD|234300 TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain. Members of this
highly hydrophobic probable integral membrane family
belong to two classes. In one, a single copy of the
region modeled by This model represents essentially the
full length of a strongly hydrophobic protein of about
700 to 900 residues (variable because of long inserts in
some). The domain architecture of the other class
consists of an additional N-terminal region, two copies
of the region represented by this model, and three to
four repeats of TPR, or tetratricopeptide repeat. The
unusual species range includes several Archaea, several
Chloroflexi, and Clostridium phytofermentans. An unusual
motif YYYxG is present, and we suggest the name
Chlor_Arch_YYY protein. The function is unknown.
Length = 723
Score = 29.3 bits (66), Expect = 6.2
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 24 GLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFAL-----GYHWLDAV--IFL 76
G ASG G IH F+ II G+ +FL +SF I W+ I L
Sbjct: 386 GPASGRGIGLVETRTTIHQFL-IIHGLFLFLFISFLITGLTGDSRRKKARWILLAPFIAL 444
Query: 77 IGIIVANVPE-GLLATVTV 94
+ + +P LL + V
Sbjct: 445 LLGLSLGIPLLALLLPLLV 463
>gnl|CDD|224201 COG1282, PntB, NAD/NADP transhydrogenase beta subunit [Energy
production and conversion].
Length = 463
Score = 28.9 bits (65), Expect = 6.7
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
Query: 20 GRIAGLASGLDTGETPIAKEIHHFIHIITGVA-VFLGVSF------------FIIAFALG 66
G+++G P+ H ++++ G+A + LG++F +AF +G
Sbjct: 154 GKLSGRYKFRLFQGAPVRFAGQHLLNLVLGLATIGLGIAFIATENWPAFGAMLALAFLMG 213
Query: 67 YH 68
Sbjct: 214 VL 215
>gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein.
Length = 322
Score = 28.9 bits (65), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 137 RMTTEDPNDPR---HLEVMKGAPERI 159
+ T DPNDP+ HL + GA ER+
Sbjct: 32 KATVRDPNDPKKTEHLLALDGAKERL 57
>gnl|CDD|182018 PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional.
Length = 172
Score = 28.2 bits (63), Expect = 7.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 328 TVEDIALRLNIPVSEVNPREAKA 350
T +IA +L + VS V AKA
Sbjct: 137 TYSEIAHKLGVSVSSVKKYVAKA 159
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 29.0 bits (66), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 46 IITGVAVFLGVSFFIIAFALGYHWLDAVIFLIGII 80
I V + V F+ A L WL AV FL+G +
Sbjct: 32 TIAIFGVVVAVLLFLPAGGLFLGWLTAVAFLVGAV 66
>gnl|CDD|223887 COG0817, RuvC, Holliday junction resolvasome, endonuclease subunit
[DNA replication, recombination, and repair].
Length = 160
Score = 28.0 bits (63), Expect = 7.8
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 333 ALRLNIPVSEVNPREAKAAVVHGSVAMGIAGSDVSKQAADMI 374
A R +PV E P + K AVV G +D +Q M+
Sbjct: 89 AARRGLPVFEYTPNQVKKAVV------GNGKAD-KEQVQHMV 123
>gnl|CDD|131928 TIGR02882, QoxB, cytochrome aa3 quinol oxidase, subunit I. This
family (QoxB) encodes subunit I of the aa3-type quinone
oxidase, one of several bacterial terminal oxidases.
This complex couples oxidation of reduced quinones with
the reduction of molecular oxygen to water and the
pumping of protons to form a proton gradient utilized
for ATP production. aa3-type oxidases contain two heme a
cofactors as well as copper atoms in the active site
[Energy metabolism, Electron transport].
Length = 643
Score = 28.7 bits (64), Expect = 8.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 48 TGVAVFLGVSFFIIAFALGYH-WLDAVIFLIGII 80
+GV ++G+ FFI F L + A++ GI
Sbjct: 582 SGVGFWIGIFFFIGGFFLVFETVAPAIVGAFGIF 615
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family.
Calpain-like thiol protease family (peptidase family
C2). Calcium activated neutral protease (large subunit).
Length = 318
Score = 28.4 bits (64), Expect = 9.2
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 120 GSTSTICSDKTGTLTQNRMTTEDPNDPRHL-EVMKGAPERILDKCSTIFINGKEKVLDEE 178
GST+ D TG + ++ E DP +L E + A ER +I G ++EE
Sbjct: 162 GSTTEALEDLTGGVAESIDLKEASKDPDNLFEDLFKAFERGSLMGCSI---GAGTAVEEE 218
Query: 179 MREAF----NNAY 187
++ +AY
Sbjct: 219 EQKDCGLVKGHAY 231
>gnl|CDD|181086 PRK07695, PRK07695, transcriptional regulator TenI; Provisional.
Length = 201
Score = 28.1 bits (63), Expect = 9.8
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 320 GIISEGNETVEDIALRLNIPVSEV------NPREAKAAVVHGSVAM-GIAGSDVSKQAAD 372
G+ + G E + DIA L+IPV + N R+ AA V G M GI S A
Sbjct: 132 GVPARGLEELSDIARALSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAK 191
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 28.0 bits (63), Expect = 9.9
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 40 IHHFIHIITGVAVFLGVSFFIIAFALGYHWLDAVI-FLIGIIVA 82
+H + ++ +AV +G+ ++ G D + LI +++
Sbjct: 132 LHALVDVLGSLAVLIGL---LLILLTGLPIADPLASLLIALLIL 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.409
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,630,811
Number of extensions: 2635615
Number of successful extensions: 3576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3540
Number of HSP's successfully gapped: 173
Length of query: 492
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 391
Effective length of database: 6,457,848
Effective search space: 2525018568
Effective search space used: 2525018568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)