RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11923
(492 letters)
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 386 bits (994), Expect = e-124
Identities = 208/372 (55%), Positives = 231/372 (62%), Gaps = 110/372 (29%)
Query: 137 RMTT----EDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGG 192
+ E ++ R+L VMKGAPERILD+CSTI +NG E+ L E+M+EAF NAY ELGG
Sbjct: 493 YQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGG 552
Query: 193 LGERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCR 252
LGERVLGFC LP DK+ G+ FD DEPNFP T + FVGLM+MIDPPRAAVPDAV KCR
Sbjct: 553 LGERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCR 612
Query: 253 SAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQD 312
SAGIKVIMVTGDHPITAK
Sbjct: 613 SAGIKVIMVTGDHPITAK------------------------------------------ 630
Query: 313 GAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGS---------------- 356
AIAK VGIISEGNET+EDIA RLNIP+ +VNPR+AKA VVHGS
Sbjct: 631 -AIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHY 689
Query: 357 ---------------------------VAM--------------------GIAGSDVSKQ 369
VA+ GI+GSDVSKQ
Sbjct: 690 HTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQ 749
Query: 370 AADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGT 429
AADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI+PFL FI+ ++PLPLGT
Sbjct: 750 AADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGT 809
Query: 430 VTILCIDLGTDM 441
VTILCIDLGTDM
Sbjct: 810 VTILCIDLGTDM 821
Score = 259 bits (665), Expect = 5e-77
Identities = 117/140 (83%), Positives = 123/140 (87%), Gaps = 1/140 (0%)
Query: 1 MVTS-TAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFF 59
TA+GVV+ GD TVMGRIA LASGL+ G TPIA EI HFIHIITGVAVFLGVSFF
Sbjct: 253 NCVEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFF 312
Query: 60 IIAFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETL 119
I++ LGY WL+AVIFLIGIIVANVPEGLLATVTVCLTLTAKRMA KNCLVKNLEAVETL
Sbjct: 313 ILSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETL 372
Query: 120 GSTSTICSDKTGTLTQNRMT 139
GSTSTICSDKTGTLTQNRMT
Sbjct: 373 GSTSTICSDKTGTLTQNRMT 392
Score = 50.7 bits (122), Expect = 8e-07
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGII 322
+I EADTTE+QSG +D+TS + AL+RIA LCNRA F+ GQD +
Sbjct: 401 QIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVA 453
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 386 bits (993), Expect = e-124
Identities = 180/372 (48%), Positives = 216/372 (58%), Gaps = 110/372 (29%)
Query: 137 RMTT----EDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGG 192
+ EDP DPRH+ VMKGAPER+L++CS+I I G+E LDE+ REAF AY LGG
Sbjct: 498 FQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGG 557
Query: 193 LGERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCR 252
LGERVLGFC L L +P G+ FD + NFP +G+ F GL+SMIDPPRA VPDAV KCR
Sbjct: 558 LGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCR 617
Query: 253 SAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQD 312
+AGI+VIMVTGDHPITAK
Sbjct: 618 TAGIRVIMVTGDHPITAK------------------------------------------ 635
Query: 313 GAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHGS---------------- 356
AIA SVGIISEG+ETVEDIA RL +PV +VN ++A+A V++G
Sbjct: 636 -AIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRT 694
Query: 357 ---------------------------VAM--------------------GIAGSDVSKQ 369
VA+ GIAGSD +K
Sbjct: 695 HPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKN 754
Query: 370 AADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGT 429
AADMILLDDNFASIVTGVE+GRLIFDNLKKSIAYTLT NIPE++P+L +I + +PLPLG
Sbjct: 755 AADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGC 814
Query: 430 VTILCIDLGTDM 441
+TIL I+L TD+
Sbjct: 815 ITILFIELCTDI 826
Score = 259 bits (663), Expect = 8e-77
Identities = 93/140 (66%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Query: 1 MVTS-TAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFF 59
M TA+G+V++ GD T++GRIA LASG++ +TPIA EI HF+ II G+A+ G +FF
Sbjct: 258 MCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFF 317
Query: 60 IIAFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETL 119
I+A +GY +L A++F + I+VA VPEGLLATVTVCL+LTAKR+ASKNC+VKNLEAVETL
Sbjct: 318 IVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETL 377
Query: 120 GSTSTICSDKTGTLTQNRMT 139
GSTS ICSDKTGTLTQNRMT
Sbjct: 378 GSTSVICSDKTGTLTQNRMT 397
Score = 51.1 bits (123), Expect = 6e-07
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGII 322
I ADTTEDQSG +D++S ++AL R+ TLCNRA FK GQD +I
Sbjct: 406 HIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVI 458
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 275 bits (705), Expect = 2e-83
Identities = 83/541 (15%), Positives = 169/541 (31%), Gaps = 158/541 (29%)
Query: 1 MVTS-TAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHI-ITGVAVFLGVSF 58
+ VVI+ G +T G+ A L + K + + I +A+ + +
Sbjct: 201 TCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ-VGHFQKVLTAIGNFCICSIAIGMVIEI 259
Query: 59 FIIAFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVET 118
++ + D + L+ +++ +P + ++V + + + R++ + + K + A+E
Sbjct: 260 IVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEE 319
Query: 119 LGSTSTICSDKTGTLTQNRMTTEDPNDPRHL------EVMKGA----------------- 155
+ +CSDKTGTLT N+++ + +V+ A
Sbjct: 320 MAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDAIDAAMV 379
Query: 156 -----PERILDKC---------------STIFINGKEKVL----------------DEEM 179
P+ + +I+G ++
Sbjct: 380 GMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKASNDL 439
Query: 180 REAFNNAYYELGGLGERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDP 239
+ + + G R L A + + FVGL+ + DP
Sbjct: 440 SKKVLSIIDKYAERGLRSLAV------ARQVVPEKTKESPG-----APWEFVGLLPLFDP 488
Query: 240 PRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIA 299
PR + + + + G+ V M+TGD K
Sbjct: 489 PRHDSAETIRRALNLGVNVKMITGDQLAIGK----------------------------- 519
Query: 300 TLCNRAEFKGGQDGAIAKSVGII-----------SEGNETVEDIALRLNIPV----SEVN 344
+ +G+ + + + I + I + V
Sbjct: 520 --------------ETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVF 565
Query: 345 PREAKAAVVHG------SVAM----------------GIA---GSDVSKQAADMILLDDN 379
P E K +V V M GIA +D ++ A+D++L +
Sbjct: 566 P-EHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPG 624
Query: 380 FASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGTVTILCIDLGT 439
+ I++ V R IF +K Y ++ I + F+ L+ +L I +
Sbjct: 625 LSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALI-WEFDFSAFMVLIIAILN 683
Query: 440 D 440
D
Sbjct: 684 D 684
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 234 bits (599), Expect = 4e-68
Identities = 86/354 (24%), Positives = 136/354 (38%), Gaps = 94/354 (26%)
Query: 137 RMTT------EDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAF--NNAYY 188
M+ + +KGAPE ++D+C+ + + + ++E +
Sbjct: 494 SMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEW 553
Query: 189 ELGGLGERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAV 248
G R L P + + D T + FVG++ M+DPPR V ++
Sbjct: 554 GTGRDTLRCLALATRDTPPKREEMVLD-DSSRFMEYETDLTFVGVVGMLDPPRKEVMGSI 612
Query: 249 AKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFK 308
CR AGI+VIM+TGD+ TA
Sbjct: 613 QLCRDAGIRVIMITGDNKGTAI-------------------------------------- 634
Query: 309 GGQDGAIAKSVGIISEGNETVE------------DIALR---LNIPV-SEVNPREAKAAV 352
AI + +GI E E + R + V P K+ +
Sbjct: 635 -----AICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEP-SHKSKI 688
Query: 353 V-----HGS-VAM----------------GIA---GSDVSKQAADMILLDDNFASIVTGV 387
V + AM GIA G+ V+K A++M+L DDNF++IV V
Sbjct: 689 VEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAV 748
Query: 388 EEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGTVTILCIDLGTDM 441
EEGR I++N+K+ I Y ++SN+ E+ L +P L V +L ++L TD
Sbjct: 749 EEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 802
Score = 163 bits (415), Expect = 2e-43
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 11/150 (7%)
Query: 1 MVTS-TAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFF 59
+ + A G+V + G +T +G+I + + +TP+ +++ F ++ V + V+ +
Sbjct: 214 NIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVW 273
Query: 60 IIAFALGYHWLDAVI--------FLIGI--IVANVPEGLLATVTVCLTLTAKRMASKNCL 109
+I + F I + VA +PEGL A +T CL L +RMA KN +
Sbjct: 274 LINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAI 333
Query: 110 VKNLEAVETLGSTSTICSDKTGTLTQNRMT 139
V++L +VETLG TS ICSDKTGTLT N+M+
Sbjct: 334 VRSLPSVETLGCTSVICSDKTGTLTTNQMS 363
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 216 bits (552), Expect = 6e-62
Identities = 103/536 (19%), Positives = 173/536 (32%), Gaps = 153/536 (28%)
Query: 2 VTS-TAKGVVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFI 60
V A V+ + GDNT +GR A L + G + ++ I+ + +F + ++
Sbjct: 251 VKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWV 310
Query: 61 IAFALGYHWLDAVIFLIGIIVANVPEGL------------------------------LA 90
+F + + F + I + VP GL LA
Sbjct: 311 SSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLA 370
Query: 91 TVTV-CL----TLTAKRMASKNCLVKNLEAVETLGSTSTICSD-KTGT------------ 132
V + C TLT +++ + E L T+ + + K
Sbjct: 371 GVEILCSDKTGTLTKNKLSLHDPYTVAGVDPEDLMLTACLAASRKKKGIDAIDKAFLKSL 430
Query: 133 ---------LTQNRMTTEDPNDP--------------RHLEVMKGAPERILDKCSTIFIN 169
L++ ++ P DP + +KGAP +L
Sbjct: 431 KYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEED--- 487
Query: 170 GKEKVLDEEMREAFNNAYYELGGLGERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMR 229
+ EE+ +A+ N E G R LG A K E
Sbjct: 488 ---HPIPEEVDQAYKNKVAEFATRGFRSLGV------ARKR--------GE-----GSWE 525
Query: 230 FVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTS 289
+G+M +DPPR V + ++ G+ + M+TGD A+
Sbjct: 526 ILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARET----------------- 568
Query: 290 PGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAK 349
+ L + N G G + S E + VE +EV P + K
Sbjct: 569 --SRQLGLGTNIYNAERLGLGGGGDMPGS-----EVYDFVEAADG-----FAEVFP-QHK 615
Query: 350 AAVVHG------SVAM----------------GIA---GSDVSKQAADMILLDDNFASIV 384
VV VAM GIA SD ++ AAD++ L +I+
Sbjct: 616 YNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADIVFLAPGLGAII 675
Query: 385 TGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLTFILLDIPLPLGTVTILCIDLGTD 440
++ R IF + + Y + +I FL + + L ++ I + D
Sbjct: 676 DALKTSRQIFHRMYAYVVYRIALSIHLEI-FLGLWIAILNRSLNIELVVFIAIFAD 730
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 87.3 bits (217), Expect = 2e-20
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 137 RMTT--EDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLG 194
RM+ + + L V KGA + IL+ CS + NG+ LD+ M L G
Sbjct: 70 RMSVVVAENTEHHQL-VCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQG 128
Query: 195 ERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRA 242
RV+ LPA + DE + + G ++ +D
Sbjct: 129 LRVVAVATKYLPAREGDYQRA---DE-----SDLILEGYIAFLDHHHH 168
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 68.6 bits (169), Expect = 3e-13
Identities = 51/336 (15%), Positives = 102/336 (30%), Gaps = 121/336 (36%)
Query: 102 RMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTTEDPNDPRHLEVMKGAPER--- 158
+M K ++KN E + TI +KTGTLT + E
Sbjct: 8 KMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFIGDSLSLAYAASVEALSS 67
Query: 159 ------ILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGFCD----LLLPAD 208
I+ KE+ + + F + G+G V G + A+
Sbjct: 68 HPIAKAIVKY-------AKEQGVKILEVKDFKE----ISGIG--VRGKISDKIIEVKKAE 114
Query: 209 -KFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPI 267
+ + + ++ D PR + D + K ++ G+K+I+++GD
Sbjct: 115 NNNDIAVYIN----------GEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKED 164
Query: 268 TAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNE 327
K ++K + I +
Sbjct: 165 KVK-------------------------------------------ELSKELNI-----Q 176
Query: 328 TVEDIALRLNIPVSEVNPREAKAAVVH------GSVAM----------------GIA--- 362
S ++P E K ++ V M +A
Sbjct: 177 EY----------YSNLSP-EDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMGN 225
Query: 363 GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK 398
G D+SK AD+IL+ ++ +++ ++ + + + +
Sbjct: 226 GVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAIP 261
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 68.3 bits (168), Expect = 5e-13
Identities = 63/339 (18%), Positives = 112/339 (33%), Gaps = 119/339 (35%)
Query: 109 LVKNLEAVETLGSTSTICSDKTGTLTQNRMTTED----PNDPRHLEVMKGAPER------ 158
L+KN +A+E + + DKTGTLT+ + D D R L + ER
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHPI 78
Query: 159 ---ILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLG---ERVLGFCDLLLPADKFPL 212
I+ K E ++ E + G G + +L L+ +
Sbjct: 79 AEAIVKK-------ALEHGIELGEPEKVEV----IAGEGVVADGILVGNKRLMEDFGVAV 127
Query: 213 GFKFDCDEPNFPLTGM---------RFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTG 263
+ + R G++++ D + + AV + + GIKV M+TG
Sbjct: 128 SNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITG 187
Query: 264 DHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIIS 323
D+ +A+ AI++ + +
Sbjct: 188 DNWRSAE-------------------------------------------AISRELNL-- 202
Query: 324 EGNETVEDIALRLNIPVSEVNPREAKAAVVH-----GSVAM----------------GIA 362
+ V ++EV P K+ V VA GIA
Sbjct: 203 ---DLV----------IAEVLP-HQKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIA 248
Query: 363 ---GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK 398
GSDV+ ++ D++L+ D+ +V ++ R +K
Sbjct: 249 VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 69.5 bits (171), Expect = 1e-12
Identities = 63/339 (18%), Positives = 112/339 (33%), Gaps = 119/339 (35%)
Query: 109 LVKNLEAVETLGSTSTICSDKTGTLTQNRMTTED----PNDPRHLEVMKGAPER------ 158
L+KN +A+E + + DKTGTLT+ + D D R L + ER
Sbjct: 391 LIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHPI 450
Query: 159 ---ILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLG---ERVLGFCDLLLPADKFPL 212
I+ K E ++ E + G G + +L L+ +
Sbjct: 451 AEAIVKK-------ALEHGIELGEPEKVEV----IAGEGVVADGILVGNKRLMEDFGVAV 499
Query: 213 GFKFDCDEPNFPLTGM---------RFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTG 263
+ + R G++++ D + + AV + + GIKV M+TG
Sbjct: 500 SNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITG 559
Query: 264 DHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIIS 323
D+ +A+ AI++ + +
Sbjct: 560 DNWRSAE-------------------------------------------AISRELNL-- 574
Query: 324 EGNETVEDIALRLNIPVSEVNPREAKAAVV-----HGSVAM----------------GIA 362
+ V ++EV P K+ V VA GIA
Sbjct: 575 ---DLV----------IAEVLP-HQKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIA 620
Query: 363 ---GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK 398
GSDV+ ++ D++L+ D+ +V ++ R +K
Sbjct: 621 VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 659
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 69.1 bits (170), Expect = 1e-12
Identities = 77/402 (19%), Positives = 134/402 (33%), Gaps = 116/402 (28%)
Query: 43 FIHIITGVAVFLGVSFFIIAFALGYHWLDAVIFLIGIIVANVPEGL-LATVTVCLTLTAK 101
FI + VA+ +F F L A LI ++V P LAT T
Sbjct: 250 FIPTVLLVAI---SAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMG- 305
Query: 102 RMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTTEDPNDPRHLEVMKGAPERIL- 160
+ A L+KN +A+E + + DKTGTLT+ + D L + G +L
Sbjct: 306 KGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTD------LVPLNGDERELLR 359
Query: 161 -----DKCS------TIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGFCDLLLPADK 209
++ S I E ++ E G + + +L L+
Sbjct: 360 LAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVE-VIAGEGVVADGILVGNKRLMEDFG 418
Query: 210 FPLGFKFDCDEPNFPLTGM---------RFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIM 260
+ + + R G++++ D + + AV + + GIKV M
Sbjct: 419 VAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGM 478
Query: 261 VTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVG 320
+TGD+ +A+ AI++ +
Sbjct: 479 ITGDNWRSAE-------------------------------------------AISRELN 495
Query: 321 IISEGNETVEDIALRLNIPVSEVNPREAKAAVV-----HGSVAM---------------- 359
+ + V ++EV P K+ V VA
Sbjct: 496 L-----DLV----------IAEVLP-HQKSEEVKKLQAKEVVAFVGDGINDAPALAQADL 539
Query: 360 GIA---GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK 398
GIA GSDV+ ++ D++L+ D+ +V ++ R +K
Sbjct: 540 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 581
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 56.7 bits (138), Expect = 4e-09
Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 83/194 (42%)
Query: 229 RFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRT 288
G++++ D R +A++K ++ GIK +M+TGD+ AK
Sbjct: 134 EVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAK------------------ 175
Query: 289 SPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREA 348
+A+ +G+ + +EV P
Sbjct: 176 -------------------------WVAEELGL-----DDY----------FAEVLP-HE 194
Query: 349 KAAVVH-----GSVAM----------------GIA---GSDVSKQAADMILLDDNFASIV 384
KA V AM GIA G+DV+ + AD++L+ ++ +
Sbjct: 195 KAEKVKEVQQKYVTAMVGDGVNDAPALAQADVGIAIGAGTDVAVETADIVLVRNDPRDVA 254
Query: 385 TGVEEGRLIFDNLK 398
VE R +
Sbjct: 255 AIVELSRKTYSKFH 268
Score = 35.9 bits (84), Expect = 0.018
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 110 VKNLEAVETLGSTSTICSDKTGTLTQNRMT 139
+++ +A E + DKTGTLT+ R
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFG 30
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 57.6 bits (140), Expect = 6e-09
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 84/185 (45%)
Query: 229 RFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRT 288
+ V L+ + DP +++ P+ + + + +GI+++M+TGD TA+
Sbjct: 544 KTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAE------------------ 585
Query: 289 SPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREA 348
A+A ++GI + V V+E+ P E
Sbjct: 586 -------------------------AVAGTLGI-----KKV----------VAEIMP-ED 604
Query: 349 KAAVV------HGSVAM----------------GIA---GSDVSKQAADMILLDDNFASI 383
K+ +V VAM GIA G+DV+ ++A + LL + I
Sbjct: 605 KSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMGTGTDVAIESAGVTLLHGDLRGI 664
Query: 384 VTGVE 388
Sbjct: 665 AKARR 669
Score = 38.3 bits (90), Expect = 0.006
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 102 RMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQ 135
+ A L+KN EA+E + +T+ DKTGTLT+
Sbjct: 400 KGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTE 433
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 3e-07
Identities = 54/398 (13%), Positives = 107/398 (26%), Gaps = 131/398 (32%)
Query: 134 TQNRMTTEDP-----NDPR---HLEVMKGAPERILDKCSTIFING-----K-----EKVL 175
++R+ ++ N R +L++ + E L + I+G K + L
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 176 DEEMREAFNNAYYELGGLGERVLGFC----DLLLPADKFPLGFKFDCD-------EPNFP 224
+++ + + L L C +L K L ++ D + N
Sbjct: 173 SYKVQCKMDFKIFWLN------LKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIK 224
Query: 225 LT----GMRFVGLMSMIDPPRA-AVPDAVA----------KCRSAGIKVIMVTGDHPITA 269
L L+ V V C K+++ T +T
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-----KILLTTRFKQVTD 279
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETV 329
+ A TT + D S +E
Sbjct: 280 FLSAATTTH----ISLDHHSMTL-------------------------------TPDEVK 304
Query: 330 EDIALRLNIPVSEVNPREAKAAVVHGS-VAMGIAGSDVSKQAADMILLDDNFASIVTGVE 388
+ L+ ++ PRE + + I + D + DN+
Sbjct: 305 SLLLKYLDCRPQDL-PREVLT----TNPRRLSIIAESIR----DGLATWDNWK------- 348
Query: 389 EGRLIFDNLKKSIAYTLTSNIP-EISP-FLTFILL--DIPLPLGTVTILCIDLGTDMELT 444
+ D L I +L P E F + +P ++++
Sbjct: 349 --HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI----------- 395
Query: 445 W-QGKTHIPE--ISPFLTFILLDIPLPLGTVTILCIDL 479
W ++ + L++ T++I I L
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.003
Identities = 52/280 (18%), Positives = 84/280 (30%), Gaps = 81/280 (28%)
Query: 177 EEMREAFNNAYYELGGLGERVLGFCDLLLPADKFPLGFKFDCDEPN--FPLTGMRFVGLM 234
E + A L +G R C P P D E N P + M +
Sbjct: 290 ESFFVSVRKAITVLFFIGVR----CYEAYPNTSLPPSILEDSLENNEGVP-SPM-----L 339
Query: 235 SMIDPPRAAVPDAVAKCRSA-------------GIKVIMVTGDHP-------ITAKIIEA 274
S+ + + V D V K S G K ++V+G P +T + +A
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-PPQSLYGLNLTLRKAKA 398
Query: 275 DTTEDQSGVQYDRTSPGFKA--LARIAT-----LCNRAEFKGGQDGAIAKSVGIISEGNE 327
+ DQS + + F L +A+ L A +D + +
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFL-PVASPFHSHLLVPASDLINKD---LVKNNVSFNAKD 454
Query: 328 TVEDIALRLNIPV----SEVNPREAKAAVVHGSVAMGIAGSDVSKQAADMI----LLDDN 379
+ IPV + R ++ V I V + +LD
Sbjct: 455 --------IQIPVYDTFDGSDLRVLSGSISERIVDC-IIRLPVKWETTTQFKATHILD-- 503
Query: 380 F--------ASIVTGVEEG---RLIFDNLKKSIAYTLTSN 408
F + ++G R+I +A TL N
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVI-------VAGTLDIN 536
Score = 38.1 bits (88), Expect = 0.008
Identities = 42/259 (16%), Positives = 75/259 (28%), Gaps = 94/259 (36%)
Query: 207 ADKF---PLGFK-FDCDEPNFPLTGMRFVG---------LMSMIDPPRAAVPDAVAKCRS 253
AD GF D N + F G +MI + D K
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI---FETIVDGKLKTEK 1705
Query: 254 AGIKVIMVTGDHPITAKIIEADT-----TEDQSGVQYDRTSPGFKALARIATLCNRAEF- 307
I + T+ ++ T Q+ T P AL TL +A F
Sbjct: 1706 -----IFKEINEHSTSYTFRSEKGLLSAT------QF--TQP---AL----TLMEKAAFE 1745
Query: 308 ----KGGQD----------G---AIAKSVGIISEGNETVEDIALRL----------NIPV 340
KG G A+A ++S +E + + +P
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMS-----IES-LVEVVFYRGMTMQVAVPR 1799
Query: 341 SEVNPRE-AKAAVVHGSVAMGIAGSDVSKQAADMI------LLD---DNFAS---IVTG- 386
E+ A+ G VA + + + + + L++ N + + G
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEAL-QYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
Query: 387 ---VEEGRLIFDNLK-KSI 401
++ + + +K + I
Sbjct: 1859 LRALDTVTNVLNFIKLQKI 1877
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 32.5 bits (75), Expect = 0.28
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 41 HHFIHIITGVAVFLGVSFFIIAFALGYHWLDAVIFLIGIIVA 82
H+ ++ A+ L + G+H DA+ + +
Sbjct: 146 HYQSDVMMNGAILLA----LGLSWYGWHRADAL---FALGIG 180
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A
{Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A*
1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Length = 306
Score = 31.7 bits (72), Expect = 0.46
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 12/100 (12%)
Query: 237 IDPP-RAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKAL 295
I P VAK R +KVI V D + + V T G +
Sbjct: 63 ICTPDPKLGSAIVAKARGYDMKVIAV--DDQFVNA--KGKPMDTVPLVMLAATKIGERQG 118
Query: 296 ARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALR 335
+ + G K +++ ++ R
Sbjct: 119 QELYKEM-------QKRGWDVKESAVMAITANELDTARRR 151
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A
{Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Length = 1003
Score = 32.1 bits (72), Expect = 0.55
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 202 DLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVP----DAVAKCRSAGIK 257
D++L K PL DE + + G R V + P R VP D K ++ G
Sbjct: 12 DIILDDAKGPLQNIVTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFN 71
Query: 258 VI 259
+
Sbjct: 72 TV 73
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.24.1.1
Length = 663
Score = 32.0 bits (73), Expect = 0.55
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 32 GETPIAKEIHHFIHI--ITGVAVFLGVSFFIIAFALGYH-WLDAVIFLIGIIVA 82
GE + + IH+ +G + + I FA+ +H W A++ G+I+
Sbjct: 571 GEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIIT 624
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C*
2wu5_C* 2wu2_C*
Length = 129
Score = 28.1 bits (63), Expect = 3.5
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 45 HIITGVAVFLGVSFFIIAFALGYHWLDAVIFLIGIIVANVPEGLLATVTVCLTLT 99
H ++GV F+ V + + LG F + + L
Sbjct: 30 HRVSGVITFVAVGI--LLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALA 82
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 29.1 bits (64), Expect = 3.9
Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 4/49 (8%)
Query: 145 DPRHL----EVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYE 189
D L E + + +C+ + + + N Y+
Sbjct: 440 DINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFL 488
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding
protein, MOLY binding protein, metal transport; 1.50A
{Haemophilus influenzae} PDB: 3psa_A
Length = 326
Score = 28.9 bits (65), Expect = 4.3
Identities = 12/122 (9%), Positives = 37/122 (30%), Gaps = 19/122 (15%)
Query: 245 PDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGFKALARIATLCNR 304
+ + + I V+ ++ + + + T Y+ + + IA + +
Sbjct: 96 SEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGL--KQGIELIAEVFEK 153
Query: 305 AEFKGGQDGAIAKSVGIISEGNETVEDIALRL-NIPVSEVNPREAKAAVVHGSVAMGIAG 363
+ ++ + +A RL ++ + + + +G G
Sbjct: 154 KQ--------QGDE--LVKAAFANRKLLADRLGDVSADK------RVRTYMANPDLGTYG 197
Query: 364 SD 365
S
Sbjct: 198 SG 199
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose
binding protein, periplasmic binding protein, GBP; HET:
BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Length = 313
Score = 28.5 bits (64), Expect = 5.2
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 37/112 (33%)
Query: 233 LMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTSPGF 292
++ DP AV + K GI V+ + D SP
Sbjct: 62 AIAPSDP--TAVIPTIKKALEMGIPVVTL------------------------DTDSPDS 95
Query: 293 KALARIATLCNRAEFKGGQDGA--IAKSVG-----IISEGNETVEDIALRLN 337
I T ++ G + + +G +I G+ T + R+
Sbjct: 96 GRYVYIGT----DNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQ 143
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase;
2.50A {Escherichia coli} SCOP: c.55.3.6
Length = 158
Score = 27.1 bits (61), Expect = 7.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 333 ALRLNIPVSEVNPREAKAAVV 353
A+ +PV E R+ K VV
Sbjct: 91 AVNQELPVFEYAARQVKQTVV 111
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 27.5 bits (62), Expect = 9.8
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 241 RAAVPDAVAKCRSAGIKVIMVTGDHPI 267
R V V + AG K I +T D P
Sbjct: 135 RNVVAQLVRRAERAGFKAIALTVDTPR 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.409
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,819,294
Number of extensions: 513827
Number of successful extensions: 1620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1605
Number of HSP's successfully gapped: 92
Length of query: 492
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,993,456
Effective search space: 1577415120
Effective search space used: 1577415120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)