RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11923
(492 letters)
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 101 bits (253), Expect = 1e-25
Identities = 66/108 (61%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Query: 137 RMTT---EDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGL 193
+ + N H+ VMKGAPERILD+CS+I + GKE LD+EM++AF NAY ELGGL
Sbjct: 104 YQLSIHEREDNPQSHVLVMKGAPERILDRCSSILVQGKEIPLDKEMQDAFQNAYLELGGL 163
Query: 194 GERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPR 241
GERVLGFC L LP+ KFP GFKFD DE NFP + FVGLMSMID
Sbjct: 164 GERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEKLCFVGLMSMIDHHH 211
Score = 57.9 bits (139), Expect = 3e-10
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 270 KIIEADTTEDQSGVQYDRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETV 329
+I EADTTEDQSG +D+ SP + AL+RIA LCNRA FK GQ+ G+ +
Sbjct: 12 QIHEADTTEDQSGATFDKRSPTWTALSRIAGLCNRAVFKAGQENISVSKRDTA--GDAS- 68
Query: 330 EDIAL-----RLNIPVSEVNPREAKAAVVH 354
+ AL V ++ R K A +
Sbjct: 69 -ESALLKCIELSCGSVRKMRDRNPKVAEIS 97
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 96.4 bits (239), Expect = 5e-24
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 3/161 (1%)
Query: 230 FVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDRTS 289
+ +DPPR V ++ CR AGI+VIM+TGD+ TA I + +
Sbjct: 11 GTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRA 70
Query: 290 PGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAK 349
+ + R + A + + + K
Sbjct: 71 YTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALK 130
Query: 350 AAVVHGSVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEG 390
A + +AMG +G+ V+K A++M+L DDNF++IV VEEG
Sbjct: 131 KAEI--GIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEG 168
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 72.2 bits (176), Expect = 6e-15
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Query: 127 SDKTGTLTQNRMTTEDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNA 186
D+ + +KGAPE ++D+C+ + + + ++E +
Sbjct: 129 RDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSV 188
Query: 187 YYELG--GLGERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSM 236
E G R L P + + D T + FVG++ M
Sbjct: 189 IKEWGTGRDTLRCLALATRDTPPKREEMVLD-DSSRFMEYETDLTFVGVVGM 239
Score = 28.7 bits (63), Expect = 1.2
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 286 DRTSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEG 325
G LA I LCN + + + + VG +E
Sbjct: 44 SGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATET 83
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 66.6 bits (162), Expect = 2e-12
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
Query: 19 MGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFF---IIAFALGYHWLDAVIF 75
+ L +++ I +I + + F + + +
Sbjct: 124 PAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKI 183
Query: 76 LIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDK--TGTL 133
+ + VA +PEGL A +T CL L +RMA KN +V++L +VETLG + +
Sbjct: 184 AVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNMKQFIRYLI 243
Query: 134 TQNRM 138
+ N
Sbjct: 244 SSNVG 248
Score = 47.4 bits (112), Expect = 3e-06
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 347 EAKAAVVHGSVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 406
E AV+ + + + ++K+ A + S+ + GR I++N+K+ I Y ++
Sbjct: 194 EGLPAVI--TTCLALGTRRMAKKNAIV-------RSLPSVETLGRAIYNNMKQFIRYLIS 244
Query: 407 SNIPEISPFLTFILLDIPLPLGTVTILCIDLGTDM 441
SN+ E+ L +P L V +L ++L TD
Sbjct: 245 SNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 279
Score = 35.0 bits (80), Expect = 0.017
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 434 CIDLGTDMELTWQGKTHIPEISPFLTFILLDIPLPLGTVTILCIDLGTDMI 484
I + + +++ E+ L +P L V +L ++L TD +
Sbjct: 230 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGL 280
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 60.9 bits (147), Expect = 5e-12
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 35/161 (21%)
Query: 228 MRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKIIEADTTEDQSGVQYDR 287
D + + AV + + GIKV M+TGD+ +A+ I + D +
Sbjct: 10 KTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLP 69
Query: 288 TSPGFKALARIATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPRE 347
E K Q + + G+ + AL +
Sbjct: 70 H-------------QKSEEVKKLQAKEV-----VAFVGDGINDAPAL-----------AQ 100
Query: 348 AKAAVVHGSVAMGIAGSDVSKQAADMILLDDNFASIVTGVE 388
A + GS GSDV+ ++ D++L+ D+ +V ++
Sbjct: 101 ADLGIAVGS------GSDVAVESGDIVLIRDDLRDVVAAIQ 135
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 54.4 bits (130), Expect = 1e-08
Identities = 22/271 (8%), Positives = 57/271 (21%), Gaps = 55/271 (20%)
Query: 134 TQNRMTTEDPNDPRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGL 193
+ ++ L + + + A + L
Sbjct: 133 PLQFLDNVKVGKNNIYAALEEFATTELH-------------VSDATLFSLKGALWTLAQE 179
Query: 194 GERVLGFCDLLLPADKFPLGFKFDCDEPNFPLTGMRFVGLMSMIDPPRAAVPDAVAKCRS 253
+ L + + ++ ++ P V + +
Sbjct: 180 VYQEWYLGSKLYEDVE---------KKIARTTFKTGYIYQEIIL-RPVDEVKVLLNDLKG 229
Query: 254 AGIKVIMVTGDHPITAK----------------IIEADTTEDQSGVQYDRTSPGFKALAR 297
AG ++ + TG I A + + G
Sbjct: 230 AGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFS 289
Query: 298 IATLCNRAEFKGGQDGAIAKSVGIISEGNETVEDIALRLNIPVSEVNPREAKAAVVHG-S 356
+ + + + V D S + A+
Sbjct: 290 YIAALYGNNRDKYESYINKQDNIVNKDDVFIVGD---------SLADLLSAQKIGATFIG 340
Query: 357 VAMGIAGSDVSKQ----AADMILLDDNFASI 383
G+ G D + + AD ++ ++ +
Sbjct: 341 TLTGLKGKDAAGELEAHHADYVI--NHLGEL 369
Score = 47.9 bits (113), Expect = 2e-06
Identities = 8/52 (15%), Positives = 13/52 (25%)
Query: 94 VCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTTEDPND 145
V L+ S + + L LG S I + +
Sbjct: 11 VFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQK 62
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 35.7 bits (81), Expect = 0.008
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 348 AKAAVVHGSVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKK 399
AK + + A ++ +Q + + D F I +E + + + L+
Sbjct: 177 AKLSDL--CFARDYLLNECREQNLNHLPYQD-FYEIRKEIENVKEVQEWLQN 225
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 115
Score = 30.4 bits (68), Expect = 0.14
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 1 MVTSTAKGVVISCGDNTVMGRIA 23
+ A G+V + G +T +G+I
Sbjct: 90 IAAGKALGIVATTGVSTEIGKIR 112
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 30.8 bits (68), Expect = 0.33
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 242 AAVPDAVAKCRSAGIKVIMVTGDHPITAKII 272
+A+ + S GI +++VTG+ A+
Sbjct: 22 EKALEAIRRAESLGIPIMLVTGNTVQFAEAA 52
>d1hc1a3 b.1.18.3 (A:399-653) Arthropod hemocyanin, C-terminal
domain {Spiny lobster (Panulirus interruptus) [TaxId:
6735]}
Length = 255
Score = 30.6 bits (69), Expect = 0.37
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 13/90 (14%)
Query: 146 PRHLEVMKGAPERILDKCSTIFINGKEKVLDEEMREAFNNAYYELGGLGERVLGFCDLLL 205
P + + K PE + +G + + + + G GE
Sbjct: 167 PDRMLLPKSKPEGMEFNLYVAVTDGDKDTEGHNGGHDYGGTHAQCGVHGEAYP------- 219
Query: 206 PADKFPLGFKFD----CDEPNFPLTGMRFV 231
D PLG+ + + ++ ++ V
Sbjct: 220 --DNRPLGYPLERRIPDERVIDGVSNIKHV 247
>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal
domain {Horseshoe crab (Limulus polyphemus) [TaxId:
6850]}
Length = 249
Score = 30.2 bits (68), Expect = 0.50
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 16/104 (15%)
Query: 121 STSTICSDKTGT-LTQNRMTTEDPND------PRHLEVMKGAPERILDKCSTIFINGKEK 173
S+ T+ T L E ++ P HL V KG + + + + +
Sbjct: 128 SSVTLSHQPTFEDLLHGVGLNEHKSEYCSCGWPSHLLVPKGNIKGMEYHLFVMLTDWDKD 187
Query: 174 VLDEEMREAFNNAYYELGGLGERVLGFCDLLLPADKFPLGFKFD 217
+D A +A G + DK P+GF FD
Sbjct: 188 KVDGSESVACVDAVSYCGARDHKYP---------DKKPMGFPFD 222
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 29.4 bits (65), Expect = 0.87
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 9 VVISCGDNTVMGRIAGLASGLDTGETPIAKEIHHFIHIITGVAVFLGVSFFIIAFALGYH 68
+++ ++ + A +H+ ++ A+ L + G+H
Sbjct: 117 TIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLA----LGLSWYGWH 172
Query: 69 WLDAVI-FLIGIIVANVPEGLL 89
DA+ IGI + +
Sbjct: 173 RADALFALGIGIYILYSALRMG 194
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase,
subunit II {Escherichia coli [TaxId: 562]}
Length = 91
Score = 27.8 bits (62), Expect = 0.89
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 34 TPIAKEIHHFIHIITGVA--VFLGVSFFIIAFALGYHW 69
I E I G+ V + + FA Y
Sbjct: 8 GQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRA 45
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 28.7 bits (63), Expect = 1.3
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 356 SVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLI 393
VAMG A DV K AAD + + I ++ +I
Sbjct: 224 GVAMGQAKEDV-KAAADYVTAPIDEDGISKAMKHFGII 260
Score = 26.4 bits (57), Expect = 7.1
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 246 DAVAKCRSAGIKVIMVTGDHPITAKIIE 273
+A+ + G+K+ + TG +
Sbjct: 26 EALEAAHAKGLKIFIATGRPKAIINNLS 53
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 28.0 bits (61), Expect = 2.2
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 244 VPDAVAKCRSAGIKVIMVTGDHPITAKII 272
+++ G+ V +++G+ +
Sbjct: 25 AIESIRSAEKKGLTVSLLSGNVIPVVYAL 53
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 27.2 bits (59), Expect = 4.9
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 237 IDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAK 270
+ PR + + GIK ++ +G+
Sbjct: 20 YNQPRFM--AQYQELKKRGIKFVVASGNQYYQLI 51
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 26.5 bits (57), Expect = 8.2
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 246 DAVAKCRSAGIKVIMVTGDHPITAKII 272
+A+A R+ G+ V++ TG
Sbjct: 28 NAIAAARARGVNVVLTTGRPYAGVHNY 54
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 26.2 bits (56), Expect = 9.2
Identities = 2/25 (8%), Positives = 9/25 (36%)
Query: 246 DAVAKCRSAGIKVIMVTGDHPITAK 270
+ + + G ++I + +
Sbjct: 24 PIIEELKDMGFEIIFNSSKTRAEQE 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.409
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,831,915
Number of extensions: 89122
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 36
Length of query: 492
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 403
Effective length of database: 1,185,626
Effective search space: 477807278
Effective search space used: 477807278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)