BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11925
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution
Using Crystals Grown At Ph 6.5
Length = 691
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 152/337 (45%), Gaps = 47/337 (13%)
Query: 97 KPIRWC-VSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLD 154
+ ++WC VS+PE +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCTVSNPEA-TKCFQWQRNM--RRVRGPPVSCVKRDSPTQCIQAIAENRADAVTLD 60
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTA 208
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 61 GGFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASL 263
RT GW P+ L P VA FF+ SCVPG D+ + + +
Sbjct: 119 LRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 178 ENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAER------- 224
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 --------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 275 QEKFGKDKSPAFQLFGSPSGQKDLLFKDSAIGFSRVP 311
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 329 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 378
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y +++
Sbjct: 379 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLA 437
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 438 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 489
Query: 244 TGGSCVPGIDEEEKDAPASL------EKICPKATRVTY---TPLQCLKSGDGDVAFIKQV 294
+ SC PG D + K P + Y +CL GDVAF+K V
Sbjct: 490 S-QSCAPGRDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDV 548
Query: 295 KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVP 354
V L TD + A K D+ + LC G R PV++A C+L + P
Sbjct: 549 TV-------LQNTDGN----NNEAWAKDLKLADFAL--LCLDGKRKPVTEARSCHLAMAP 595
Query: 355 PHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 596 NHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 636
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 691
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 152/337 (45%), Gaps = 47/337 (13%)
Query: 97 KPIRWC-VSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLD 154
+ ++WC VS+PE +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSNPEA-TKCFQWQRNM--RKVRGPPVSCLKRDSPIQCIQAIAENRADAVTLD 60
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTA 208
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 61 GGFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASL 263
RT GW P+ L P VA FF+ SCVPG D+ + + +
Sbjct: 119 LRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C +++ Y +CLK G GDVAFI++ V + + +DE E
Sbjct: 178 ENKCAFSSQEPYFSYSGAFKCLKDGAGDVAFIRESTVFEDL------SDEAER------- 224
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 --------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 275 QEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 329 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 378
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y +++
Sbjct: 379 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLA 437
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 438 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 489
Query: 244 TGGSCVPGIDEEEKDAPASL------EKICPKATRVTY---TPLQCLKSGDGDVAFIKQV 294
+ SC PG D + K P + Y +CL GDVAF+K V
Sbjct: 490 S-QSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDV 548
Query: 295 KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVP 354
V L TD + A K D+ + LC G R PV++A C+L + P
Sbjct: 549 TV-------LQNTDGN----NNEAWAKDLKLADFAL--LCLDGKRKPVTEARSCHLAMAP 595
Query: 355 PHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 596 NHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 636
>pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 148/336 (44%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 5 RSVQWCAVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 62
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 63 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 120
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 121 RRTAGWNVPIGTLRPFLDWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 179
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFIK+ V + + +DE E
Sbjct: 180 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIKESTVFEDL------SDEAE--------- 224
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 276
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 277 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 312
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin
Length = 691
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 152/337 (45%), Gaps = 47/337 (13%)
Query: 97 KPIRWC-VSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLD 154
+ ++WC VS+PE +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSNPEA-TKCFQWQRNM--RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLD 60
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTA 208
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 61 GGFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASL 263
RT GW P+ L P VA FF+ SCVPG D+ + + +
Sbjct: 119 LRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C +++ Y +CLK G GDVAFI++ V + + +DE E
Sbjct: 178 ENKCAFSSQEPYFSYSGAFKCLKDGAGDVAFIRESTVFEDL------SDEAER------- 224
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 --------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 275 QEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 135/351 (38%), Gaps = 76/351 (21%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 329 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 378
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y + +
Sbjct: 379 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSAQSSDPDPNCVDRPVEGYLA 437
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 438 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 489
Query: 244 TGGSCVPGIDE--------------EEKDAPASLEKICPKATRVTYT-PLQCLKSGDGDV 288
+ SC PG D E K P S E+ YT +CL GDV
Sbjct: 490 S-QSCAPGSDPASNLCALCIGDEEGENKCVPNSNERY------YGYTGAFRCLAENAGDV 542
Query: 289 AFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADC 348
AF+K V V L TD + A K D+ + LC G R PV++A C
Sbjct: 543 AFVKDVTV-------LQNTDGN----NNEAWAKDLKLADFAL--LCLDGKRKPVTEARSC 589
Query: 349 NLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
+L + P H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 590 HLAMAPNHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 636
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of
Apolactoferrin, A Protein Displaying Large-Scale
Conformational Change
Length = 691
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 152/337 (45%), Gaps = 47/337 (13%)
Query: 97 KPIRWC-VSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLD 154
+ ++WC VS+PE +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSNPEA-TKCFQWQRNM--RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLD 60
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTA 208
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 61 GGFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASL 263
RT GW P+ L P VA FF+ SCVPG D+ + + +
Sbjct: 119 LRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C +++ Y +CLK G GDVAFI++ V + + +DE E
Sbjct: 178 ENKCAFSSQEPYFSYSGAFKCLKDGAGDVAFIRESTVFEDL------SDEAER------- 224
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 --------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 275 QEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 329 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 378
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y +++
Sbjct: 379 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLA 437
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 438 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 489
Query: 244 TGGSCVPGIDEEEKDAPASL------EKICPKATRVTY---TPLQCLKSGDGDVAFIKQV 294
+ SC PG D + K P + Y +CL GDVAF+K V
Sbjct: 490 S-QSCAPGSDPRSNLCALCIGDEEGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDV 548
Query: 295 KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVP 354
V L TD + A K D+ + LC G R PV++A C+L + P
Sbjct: 549 TV-------LQNTDGN----NNEAWAKDLKLADFAL--LCLDGKRKPVTEARSCHLAMAP 595
Query: 355 PHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 596 NHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 636
>pdb|1LCT|A Chain A, Structure Of The Recombinant N-Terminal Lobe Of Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 333
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 152/337 (45%), Gaps = 47/337 (13%)
Query: 97 KPIRWC-VSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLD 154
+ ++WC VS+PE +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSNPEA-TKCFQWQRNM--RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLD 60
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTA 208
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 61 GGFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASL 263
RT GW P+ L P VA FF+ SCVPG D+ + + +
Sbjct: 119 LRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 178 ENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAE-------- 223
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 224 -------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 275 QEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
>pdb|2PMS|A Chain A, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
pdb|2PMS|B Chain B, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
Length = 344
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 148/336 (44%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 5 RSVQWCAVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 62
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 63 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 120
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 121 RRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 179
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 180 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAE--------- 224
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 276
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 277 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 312
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure
Of Human Copper-lactoferrin At 2.1 Angstroms Resolution
Length = 691
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 152/337 (45%), Gaps = 47/337 (13%)
Query: 97 KPIRWC-VSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLD 154
+ ++WC VS+PE +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSNPEA-TKCFQWQRNM--RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLD 60
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTA 208
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 61 GGFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASL 263
RT GW P+ L P VA FF+ SCVPG D+ + + +
Sbjct: 119 LRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 178 ENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAER------- 224
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 --------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 275 QEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 329 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 378
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y +++
Sbjct: 379 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLA 437
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 438 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 489
Query: 244 TGGSCVPGIDEEEKDAPASL------EKICPKATRVTY---TPLQCLKSGDGDVAFIKQV 294
+ SC PG D + K P + Y +CL GDVAF+K V
Sbjct: 490 S-QSCAPGSDPRSNLCALCIGDEEGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDV 548
Query: 295 KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVP 354
V L TD + A K D+ + LC G R PV++A C+L + P
Sbjct: 549 TV-------LQNTDGN----NNEAWAKDLKLADFAL--LCLDGKRKPVTEARSCHLAMAP 595
Query: 355 PHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 596 NHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 636
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin
Length = 691
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 148/336 (44%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCTVSQPEATKCFQWQRNM--RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 61
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 62 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 120 RRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 178
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 179 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAER-------- 224
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 -------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 275
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 276 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 329 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 378
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y +++
Sbjct: 379 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLA 437
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 438 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 489
Query: 244 TGGSCVPGIDEEEKDAPASL------EKICPKATRVTY---TPLQCLKSGDGDVAFIKQV 294
+ SC PG D + K P + Y +CL GDVAF+K V
Sbjct: 490 S-QSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDV 548
Query: 295 KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVP 354
V L TD + A K D+ + LC G R PV++A C+L + P
Sbjct: 549 TV-------LQNTDGN----NNEAWAKDLKLADFAL--LCLDGKRKPVTEARSCHLAMAP 595
Query: 355 PHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 596 NHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 636
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin
Length = 692
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 152/337 (45%), Gaps = 47/337 (13%)
Query: 97 KPIRWC-VSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLD 154
+ ++WC VS+PE +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 5 RSVQWCAVSNPEA-TKCFQWQRNM--RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLD 61
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTA 208
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 62 GGFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTG 119
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASL 263
RT GW P+ L P VA FF+ SCVPG D+ + + +
Sbjct: 120 LRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTG 178
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 179 ENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAER------- 225
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 226 --------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQA 275
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 276 QEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 312
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 330 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 379
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y +++
Sbjct: 380 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLA 438
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 439 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 490
Query: 244 TGGSCVPGIDEEEKDAPASL------EKICPKATRVTY---TPLQCLKSGDGDVAFIKQV 294
+ SC PG D + K P + Y +CL GDVAF+K V
Sbjct: 491 S-QSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDV 549
Query: 295 KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVP 354
V L TD + A K D+ + LC G R PV++A C+L + P
Sbjct: 550 TV-------LQNTDGN----NNEAWAKDLKLADFAL--LCLDGKRKPVTEARSCHLAMAP 596
Query: 355 PHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 597 NHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 637
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution.
pdb|1BKA|A Chain A, Oxalate-Substituted Diferric Lactoferrin
Length = 691
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 148/336 (44%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSQPEATKCFQWQRNM--RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 61
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 62 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 120 RRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 178
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 179 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAER-------- 224
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 -------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 275
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 276 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 329 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 378
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y +++
Sbjct: 379 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLA 437
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 438 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 489
Query: 244 TGGSCVPGIDEEEKDAPASL------EKICPKATRVTY---TPLQCLKSGDGDVAFIKQV 294
+ SC PG D + K P + Y +CL GDVAF+K V
Sbjct: 490 S-QSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDV 548
Query: 295 KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVP 354
V L TD + A K D+ + LC G R PV++A C+L + P
Sbjct: 549 TV-------LQNTDGN----NNEAWAKDLKLADFAL--LCLDGKRKPVTEARSCHLAMAP 595
Query: 355 PHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 596 NHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 636
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A
Resolution
Length = 690
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 148/336 (44%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 3 RSVQWCTVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 60
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 61 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 118
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 119 RRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 177
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 178 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAER-------- 223
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 224 -------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 274
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 275 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 310
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 328 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 377
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y +++
Sbjct: 378 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLA 436
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 437 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 488
Query: 244 TGGSCVPGIDEEEKDAPASL------EKICPKATRVTY---TPLQCLKSGDGDVAFIKQV 294
+ SC PG D + K P + Y +CL GDVAF+K V
Sbjct: 489 S-QSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDV 547
Query: 295 KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVP 354
V L TD + A K D+ + LC G R PV++A C+L + P
Sbjct: 548 TV-------LQNTDGN----NNDAWAKDLKLADFAL--LCLDGKRKPVTEARSCHLAMAP 594
Query: 355 PHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 595 NHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 635
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The
Milk Of Transgenic Cows
Length = 692
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 148/336 (44%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 5 RSVQWCAVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 62
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 63 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 120
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 121 RRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 179
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 180 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAER-------- 225
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 226 -------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 276
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 277 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 312
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSK 137
Q L+K+ E+V R + + WC + + KC + + C+ +++
Sbjct: 330 QNLRKSE-EEVAARRARVV----WCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTE 379
Query: 138 VCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD--------------LXX 183
C+ L+ G AD ++LD K L P+L E Y +++
Sbjct: 380 DCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLA 438
Query: 184 XXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFF 243
+KG KSCHTA RT GW P+ L + SC + E+F
Sbjct: 439 VAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFN----QTGSCKF----DEYF 490
Query: 244 TGGSCVPGIDEEEKDAPASL------EKICPKATRVTY---TPLQCLKSGDGDVAFIKQV 294
+ SC PG D + K P + Y +CL GDVAF+K V
Sbjct: 491 S-QSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDV 549
Query: 295 KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVP 354
V L TD + A K D+ + LC G R PV++A C+L + P
Sbjct: 550 TV-------LQNTDGN----NNDAWAKDLKLADFAL--LCLDGKRKPVTEARSCHLAMAP 596
Query: 355 PHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
H VV+ K ++ ++ +L F + P+ F LF S
Sbjct: 597 NHAVVSRMDK----VERLKQVLLHQQAKFGRNGSDCPDKFCLFQS 637
>pdb|1H43|A Chain A, R210e N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 148/336 (44%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 5 RSVQWCAVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 62
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 63 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 120
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 121 RRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 179
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 180 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIEESTVFEDL------SDEAE--------- 224
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 276
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 277 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 312
>pdb|1H45|A Chain A, R210g N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 147/336 (43%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 5 RSVQWCAVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 62
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 63 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 120
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 121 RRTAGWNVPIGTLRPFLDWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 179
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI + V + + +DE E
Sbjct: 180 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIGESTVFEDL------SDEAE--------- 224
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 276
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 277 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 312
>pdb|1H44|A Chain A, R210l N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 147/336 (43%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 5 RSVQWCAVSQPEATKCFQWQRNM--RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 62
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 63 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 120
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 121 RRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 179
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI + V + + +DE E
Sbjct: 180 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFILESTVFEDL------SDEAE--------- 224
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 225 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 276
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 277 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 312
>pdb|1DSN|A Chain A, D60s N-Terminal Lobe Human Lactoferrin
Length = 333
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 147/336 (43%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TL
Sbjct: 4 RSVQWCAVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLSG 61
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 62 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 120 RRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 178
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 179 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAE--------- 223
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 224 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 275
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 276 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
>pdb|1VFE|A Chain A, Human Lactoferrin, N-terminal Lobe Mutant With Arg 121
Replaced By Ser (r121s)
Length = 333
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 147/336 (43%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 61
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 62 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
T GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 120 RSTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 178
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 179 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAE--------- 223
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 224 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 275
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 276 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
>pdb|1VFD|A Chain A, Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121
Replaced By Glu (R121e)
Length = 330
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 147/336 (43%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 61
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 62 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
T GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 120 RETAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 178
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 179 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAE--------- 223
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 224 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 275
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 276 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
>pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form.
pdb|1L5T|B Chain B, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form
Length = 332
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 147/336 (43%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSQPEATKCFQWQRNM--RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 61
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 62 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
T GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 120 RDTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 178
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 179 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAE--------- 223
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP H VV + N + D I + + A
Sbjct: 224 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQAQ 275
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 276 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
>pdb|1HSE|A Chain A, H253m N Terminal Lobe Of Human Lactoferrin
Length = 334
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 147/336 (43%), Gaps = 45/336 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
+ ++WC S +KC ++ R +R PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSQPEATKCFQWQRNM--RRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 61
Query: 156 T---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTAY 209
EA G LRP+ E YG E+ EL+GLKSCHT
Sbjct: 62 GFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASLE 264
RT GW P+ L P VA FF+ SCVPG D+ + + + E
Sbjct: 120 RRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTGE 178
Query: 265 KICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI++ V + + +DE E
Sbjct: 179 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAE--------- 223
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E E LC R PV K DC+L VP VV + N + D I + + A
Sbjct: 224 ------RDEYELLCPDNTRKPVDKFKDCHLARVPSMAVVARS--VNGKEDAIWNLLRQAQ 275
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K F+LFGS G+ D+LF + A G +P
Sbjct: 276 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 311
>pdb|1DTZ|A Chain A, Structure Of Camel Apo-Lactoferrin Demonstrates Its Dual
Role In Sequestering And Transporting Ferric Ions
Simultaneously:crystal Structure Of Camel
Apo-Lactoferrin At 2.6a Resolution.
pdb|1I6Q|A Chain A, Formation Of A Protein Intermediate And Its Trapping By
The Simultaneous Crystallization Process: Crystal
Structure Of An Iron-Saturated Intermediate In The Fe3+
Binding Pathway Of Camel Lactoferrin At 2.7 Resolution
Length = 689
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 154/348 (44%), Gaps = 46/348 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLDA 155
K +RWC +SP KC ++ + +R P C ++ S C++ I+ AD +TLD
Sbjct: 4 KSVRWCTTSPAESKKCAQWQRRM--KKVRGPSVTCVKKTSRFECIQAISTEKADAVTLDG 61
Query: 156 TEAV-LGRKNLNLRPILKEKYGNE---KDLXXXXXXXXXXXXXXXEELKGLKSCHTAYMR 211
G LRPI E YG E + +L+GLKSCHT R
Sbjct: 62 GLVYDAGLDPYKLRPIAAEVYGTENQPQTHYYAVAIAKKGTNFQLNQLQGLKSCHTGLGR 121
Query: 212 TTGWVAPVYNLLEKGL-IKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASL-----EK 265
+ GW P+ LL L P K VA+FF+ SCVP +D +E L E
Sbjct: 122 SAGWNIPM-GLLRPFLDWTGPPEPLQKAVAKFFS-ASCVPCVDGKEYPNLCQLCAGTGEN 179
Query: 266 ICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
C +++ Y +CL+ G GDVAF+K V +++ K D +Y
Sbjct: 180 KCACSSQEPYFGYSGAFKCLQDGAGDVAFVKDSTVFESLPA---KADRDQY--------- 227
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
E LC R PV +C+L VP H VV + N + D I ++ A +
Sbjct: 228 ---------ELLCPNNTRKPVDAFQECHLARVPSHAVVARS--VNGKEDLIWKLLVKAQE 276
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP---DQATDVETNY 425
F + KP F+LFGS G+ D+LF + A G+ +P D + +NY
Sbjct: 277 KFGRGKPSAFQLFGSPAGQKDLLFKDSALGLLRIPKKIDSGLYLGSNY 324
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 126/325 (38%), Gaps = 63/325 (19%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158
+ WC + KC +SR C +++ C+ L+ G AD ++LD
Sbjct: 345 VVWCAVGSDEQLKC-----QEWSRQSNQSVVCATASTTEDCIALVLKGEADALSLDGGYI 399
Query: 159 VLGRKNLNLRPILKEKYGNE------------KDLXXXXXXXXXXXXXXXEELKGLKSCH 206
+ K L P+L E + K L+G KSCH
Sbjct: 400 YIAGK-CGLVPVLAESQQSPESSGLDCVHRPVKGYLAVAVVRKANDKITWNSLRGKKSCH 458
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEK-------DA 259
TA RT GW P+ L + DSC + EFF+ SC PG D K +
Sbjct: 459 TAVDRTAGWNIPMGPLFKD----TDSCRF----DEFFSQ-SCAPGSDPRSKLCALCAGNE 509
Query: 260 PASLEKICPKATRVTYT---PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSK 316
L K P ++ Y +CL GDVAF+K V V L TD K
Sbjct: 510 EGQL-KCVPNSSERLYGYTGAFRCLAENVGDVAFVKDVTV-------LDNTD------GK 555
Query: 317 GGR--APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRH 374
G A K GD+E+ LC G R PV++A C+L V P H VV+ K + +R
Sbjct: 556 GTEQWAKDLKLGDFEL--LCLNGTRKPVTEAESCHLPVAPNHAVVSRIDK----VAHLRQ 609
Query: 375 AILSAADLFSKK----PEIFKLFGS 395
+L F + P F LF S
Sbjct: 610 VLLRQQAHFGRNGEDCPGKFCLFQS 634
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms
Resolution
Length = 689
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 160/368 (43%), Gaps = 52/368 (14%)
Query: 95 PIKPIRWC-VSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITL 153
P K +RWC +S PE KC ++ + P C R + C++ IA+ AD +TL
Sbjct: 2 PRKNVRWCTISQPEWF-KCRRWQ-WRMKKLGAPSITCVRRAFALECIRAIAEKKADAVTL 59
Query: 154 DATEAV-LGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTAY 209
D GR LRP+ E YG ++ ++L+G KSCHT
Sbjct: 60 DGGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQLDQLQGRKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSC-PYYKGVAEFFTGGSCVPGIDEEEKDAPASL----- 263
R+ GW+ P+ +L L +S P VA+FF+ SCVP ID + L
Sbjct: 120 GRSAGWIIPM-GILRPYLSWTESLEPLQGAVAKFFSA-SCVPCIDRQAYPNLCQLCKGEG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C ++R Y +CL+ G GDVAF+K+ V + + E K D +Y
Sbjct: 178 ENQCACSSREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPE---KADRDQY------- 227
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E LC RAPV +C+L VP H VV + + D I + A
Sbjct: 228 -----------ELLCLNNSRAPVDAFKECHLAQVPSHAVVARSVDG--KEDLIWKLLSKA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP---DQATDVETNYSNNM------ 429
+ F K K F+LFGS G+ D+LF + A G +P D A + + Y +
Sbjct: 275 QEKFGKNKSRSFQLFGSPPGQRDLLFKDSALGFLRIPSKVDSALYLGSRYLTTLKNLRET 334
Query: 430 LSKVHARY 437
+V ARY
Sbjct: 335 AEEVKARY 342
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 126/351 (35%), Gaps = 72/351 (20%)
Query: 72 KTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECN 131
K L T KA Y V+ WC PE KC +S+ C
Sbjct: 329 KNLRETAEEVKARYTRVV-----------WCAVGPEEQKKC-----QQWSQQSGQNVTCA 372
Query: 132 REKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD----------- 180
++ C+ L+ G AD + LD K L P+L E + K
Sbjct: 373 TASTTDDCIVLVLKGEADALNLDGGYIYTAGK-CGLVPVLAENRKSSKHSSLDCVLRPTE 431
Query: 181 -LXXXXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYK 237
LK KSCHTA RT GW P+ GLI + SC +
Sbjct: 432 GYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPM------GLIVNQTGSCAF-- 483
Query: 238 GVAEFFTGGSCVPGIDEEEKDAP------ASLEKICPKATRVTY---TPLQCLKSGDGDV 288
EFF+ SC PG D + + L+K P + Y +CL GDV
Sbjct: 484 --DEFFS-QSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDV 540
Query: 289 AFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADC 348
AF+K N + E ++ + LC G R PV++A C
Sbjct: 541 AFVK----NDTVWENTNGESTADW---------AKNLNREDFRLLCLDGTRKPVTEAQSC 587
Query: 349 NLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
+L V P H VV+ + ++ ++ +L LF K P+ F LF S
Sbjct: 588 HLAVAPNHAVVSRSDRAA----HVKQVLLHQQALFGKNGKNCPDKFCLFKS 634
>pdb|1JW1|A Chain A, Crystallization And Structure Determination Of Goat
Lactoferrin At 4.0 Resolution: A New Form Of Packing In
Lactoferrins With A High Solvent Content In Crystals
Length = 689
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 148/343 (43%), Gaps = 51/343 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIR----PPFECNREKSSKVCLKLIADGAADV 150
P K +RWC S SKC ++ R +R P C R S C++ IA AD
Sbjct: 2 PRKNVRWCAISLPEWSKCYQWQ-----RRMRKLGAPSITCVRRTSVLECIRAIAGKNADA 56
Query: 151 ITLDATEAV-LGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXXXXXX---EELKGLKSCH 206
+TLD GR LRP+ E YG EK ++L+G KSCH
Sbjct: 57 VTLDDGMVFEAGRDPYKLRPVAAEIYGTEKSPQTHYYAVAVVKKGSNFKLDQLQGQKSCH 116
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASL--- 263
R+ GW PV L + + P VA FF+ SCVP +D + L
Sbjct: 117 MGLGRSAGWNIPVGILRPPLSWTESAEPLQGAVARFFSA-SCVPCVDGKAYPNLCQLCKG 175
Query: 264 --EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKG 317
E C +++ Y +CL+ G GDVAF+K+ V + + E K D +Y
Sbjct: 176 VGENKCACSSQEPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPE---KADRDQY----- 227
Query: 318 GRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVV--TSNSKSNVEIDTIRHA 375
E LC RAPV +C+L VP H VV + + K N+ + +R
Sbjct: 228 -------------ELLCLNNTRAPVDAFKECHLAQVPSHAVVARSVDGKENLIWELLRK- 273
Query: 376 ILSAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQ 417
A + F K K + F+LFGS G+ D+LF + A G +P +
Sbjct: 274 ---AQEKFGKNKSQRFQLFGSPEGRRDLLFKDSALGFLRIPSK 313
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 123/337 (36%), Gaps = 65/337 (19%)
Query: 86 EDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIAD 145
E+V R + + WC PE SKC + + + C ++ C+ L+
Sbjct: 336 EEVKARCTRVV----WCAVGPEEQSKCQQWSEQSGQN-----VTCATASTTDDCIALVLK 386
Query: 146 GAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD------------LXXXXXXXXXXXX 193
G AD ++LD K L P++ E + K
Sbjct: 387 GEADALSLDGGYIYTAGK-CGLVPVMAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEG 445
Query: 194 XXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPG 251
LKG KSCHTA RT GW P+ GLI + SC + EFF+ SC PG
Sbjct: 446 LTWNSLKGKKSCHTAVDRTAGWNIPM------GLIANQTGSCAF----DEFFS-QSCAPG 494
Query: 252 IDEEEKDAP------ASLEKICPKATRVTY---TPLQCLKSGDGDVAFIKQVKVNKAIEE 302
D + L+K P + Y +CL GDVAF+K N + E
Sbjct: 495 ADPKSSLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVK----NDTVWE 550
Query: 303 GLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSN 362
++ + LC G PV++A C L V P H VV+ +
Sbjct: 551 NTNGESSADW---------AKNLNREDFRLLCLDGTTKPVTEAQSCYLAVAPNHAVVSRS 601
Query: 363 SKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
++ + +L LF K P+ F LF S
Sbjct: 602 DRAA----HVEQVLLHQQALFGKNGKNCPDKFCLFKS 634
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 693
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 154/344 (44%), Gaps = 50/344 (14%)
Query: 88 VIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSR--DIRPPFECNREKSSKVCLKLIAD 145
+ GRV P K +RWC S +KC +F+D S P C ++ S C++ IA
Sbjct: 11 IEGRV--PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAA 68
Query: 146 GAADVITLDAT---EAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEEL 199
AD +TLDA +A L NL +P++ E YG+++D +L
Sbjct: 69 NEADAVTLDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQL 126
Query: 200 KGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDA 259
+G KSCHT R+ GW P+ LL L + P K VA FF+G SC P D D
Sbjct: 127 RGKKSCHTGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDF 181
Query: 260 PASLEKICPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEY 312
P L ++CP T +CLK G GDVAF+K + E
Sbjct: 182 P-QLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FEN 227
Query: 313 LCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTI 372
L +K R + E LC R PV + DC+L VP H VV + S E D I
Sbjct: 228 LANKADRD--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLI 277
Query: 373 RHAILSAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ A + F K K + F+LF S GK D+LF + A G +P
Sbjct: 278 WELLNQAQEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 320
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 135/348 (38%), Gaps = 66/348 (18%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC + + + EC ++++ C+ I +G AD ++LD
Sbjct: 354 KPVKWCALSHHERLKCDEWSVNSVGK-----IECVSAETTEDCIAKIMNGEADAMSLDGG 408
Query: 157 EAVLGRKNLNLRPILKEKYGN--------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
+ K L P+L E Y E + LKG KSCHTA
Sbjct: 409 FVYIAGK-CGLVPVLAENYDKSDNCEDTPEAGFFAVAVVKKSASDLTWDNLKGKKSCHTA 467
Query: 209 YMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
RT GW P+ GL+ K + C + EFF+ G C PG +KD +SL K+
Sbjct: 468 VGRTAGWNIPM------GLLYNKINHCRF----DEFFSEG-CAPG---SKKD--SSLCKL 511
Query: 267 CPKATRVTYTP------------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
C + P +CL GDVAF+K V +
Sbjct: 512 CMGSGLNLCEPNNKEGYYGFTGAFRCLVE-KGDVAFVKHQTVPQ---------------- 554
Query: 315 SKGGRAP---VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDT 371
+ GG+ P + + E LC G R PV + A+C+L P H VVT K
Sbjct: 555 NTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKI 614
Query: 372 IRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+R + F LF S D+LF + + L D+ T
Sbjct: 615 LRQQQHLFGSDVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 660
>pdb|1FQF|A Chain A, Crystal Structures Of Mutant (K296a) That Abolish The
Dilysine Interaction In The N-Lobe Of Human Transferrin
Length = 331
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFADSAHGFLKVP 306
>pdb|1N7X|A Chain A, Human Serum Transferrin, N-Lobe Y45e Mutant
Length = 331
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASELDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin
Length = 679
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSR--DIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDAT---EAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 136/348 (39%), Gaps = 66/348 (18%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC + + + EC ++++ C+ I +G AD ++LD
Sbjct: 340 KPVKWCALSHHERLKCDEWSVNSVGK-----IECVSAETTEDCIAKIMNGEADAMSLDGG 394
Query: 157 EAVLGRKNLNLRPILKEKYGN--------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
+ K L P+L E Y E + LKG KSCHTA
Sbjct: 395 FVYIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAIAVVKKSASDLTWDNLKGKKSCHTA 453
Query: 209 YMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
RT GW P+ GL+ K + C + EFF+ G C PG +KD +SL K+
Sbjct: 454 VGRTAGWNIPM------GLLYNKINHCRF----DEFFSEG-CAPG---SKKD--SSLCKL 497
Query: 267 C-----------PKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
C K YT +CL GDVAF+K V +
Sbjct: 498 CMGSGLNLCEPNNKEGYYGYTGAFRCLVE-KGDVAFVKHQTVPQ---------------- 540
Query: 315 SKGGRAP---VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDT 371
+ GG+ P + + E LC G R PV + A+C+L P H VVT K
Sbjct: 541 NTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKI 600
Query: 372 IRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+R + F LF S D+LF + + L D+ T
Sbjct: 601 LRQQQHLFGSNVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 646
>pdb|1N84|A Chain A, Human Serum Transferrin, N-Lobe
Length = 331
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|1RYO|A Chain A, Human Serum Transferrin, N-Lobe Bound With Oxalate
Length = 327
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADGT--DFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin
Length = 679
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSR--DIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDAT---EAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 136/348 (39%), Gaps = 66/348 (18%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC + + + EC ++++ C+ I +G AD ++LD
Sbjct: 340 KPVKWCALSHHERLKCDEWSVNSVGK-----IECVSAETTEDCIAKIMNGEADAMSLDGG 394
Query: 157 EAVLGRKNLNLRPILKEKYGN--------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
+ K L P+L E Y E + LKG KSCHTA
Sbjct: 395 FVYIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 453
Query: 209 YMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
RT GW P+ GL+ K + C + EFF+ G C PG +KD +SL K+
Sbjct: 454 VGRTAGWNIPM------GLLYNKINHCRF----DEFFSEG-CAPG---SKKD--SSLCKL 497
Query: 267 C-----------PKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
C K YT +CL GDVAF+K V +
Sbjct: 498 CMGSGLNLCEPNNKEGYYGYTGAFRCLVE-KGDVAFVKHQTVPQ---------------- 540
Query: 315 SKGGRAP---VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDT 371
+ GG+ P + + E LC G R PV + A+C+L P H VVT K
Sbjct: 541 NTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKI 600
Query: 372 IRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+R + F LF S D+LF + + L D+ T
Sbjct: 601 LRQQQHLFGSNVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 646
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|B Chain B, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|C Chain C, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|D Chain D, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|E Chain E, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|F Chain F, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V8X|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 698
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSR--DIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 21 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 80
Query: 153 LDAT---EAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 81 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 138
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 139 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 192
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 193 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 239
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 240 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 289
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 290 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 325
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 136/348 (39%), Gaps = 66/348 (18%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC + + + EC ++++ C+ I +G AD ++LD
Sbjct: 359 KPVKWCALSHHERLKCDEWSVNSVGK-----IECVSAETTEDCIAKIMNGEADAMSLDGG 413
Query: 157 EAVLGRKNLNLRPILKEKYGN--------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
+ K L P+L E Y E + LKG KSCHTA
Sbjct: 414 FVYIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 472
Query: 209 YMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
RT GW P+ GL+ K + C + EFF+ G C PG +KD +SL K+
Sbjct: 473 VGRTAGWNIPM------GLLYNKINHCRF----DEFFSEG-CAPG---SKKD--SSLCKL 516
Query: 267 C-----------PKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
C K YT +CL GDVAF+K V +
Sbjct: 517 CMGSGLNLCEPNNKEGYYGYTGAFRCLVE-KGDVAFVKHQTVPQ---------------- 559
Query: 315 SKGGRAP---VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDT 371
+ GG+ P + + E LC G R PV + A+C+L P H VVT K
Sbjct: 560 NTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKI 619
Query: 372 IRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+R + F LF S D+LF + + L D+ T
Sbjct: 620 LRQQQHLFGSNVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 665
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|D Chain D, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
Length = 679
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSR--DIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDAT---EAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 136/348 (39%), Gaps = 66/348 (18%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC + + + EC ++++ C+ I +G AD ++LD
Sbjct: 340 KPVKWCALSHHERLKCDEWSVNSVGK-----IECVSAETTEDCIAKIMNGEADAMSLDGG 394
Query: 157 EAVLGRKNLNLRPILKEKYGN--------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
+ K L P+L E Y E + LKG KSCHTA
Sbjct: 395 FVYIAGK-CGLVPVLAENYDKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 453
Query: 209 YMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
RT GW P+ GL+ K + C + EFF+ G C PG +KD +SL K+
Sbjct: 454 VGRTAGWNIPM------GLLYNKINHCRF----DEFFSEG-CAPG---SKKD--SSLCKL 497
Query: 267 C-----------PKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
C K YT +CL GDVAF+K V +
Sbjct: 498 CMGSGLNLCEPNNKEGYYGYTGAFRCLVE-KGDVAFVKHQTVPQ---------------- 540
Query: 315 SKGGRAP---VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDT 371
+ GG+ P + + E LC G R PV + A+C+L P H VVT K
Sbjct: 541 NTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKI 600
Query: 372 IRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+R + F LF S D+LF + + L D+ T
Sbjct: 601 LRQQQHLFGSDVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 646
>pdb|1BP5|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|B Chain B, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|C Chain C, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|D Chain D, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BTJ|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form, Crystal Form 2
pdb|1BTJ|B Chain B, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form, Crystal Form 2
Length = 337
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|1D4N|A Chain A, Human Serum Transferrin
Length = 329
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 150/335 (44%), Gaps = 48/335 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC S +KC +F+D S P C ++ S C++ IA AD +TLD
Sbjct: 2 KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLD 61
Query: 155 A---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCHTA 208
A +A L NL +P++ E YG+++D +L+G KSCHT
Sbjct: 62 AGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTG 119
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP 268
R+ GW P+ LL L + P K VA FF+G SC P D D P L ++CP
Sbjct: 120 LGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQLCP 173
Query: 269 KATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
T +CLK G GDVAF+K+ + E L +K R
Sbjct: 174 GCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKESTI-------------FENLANKADRD- 219
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ E LC R PV + DC+L VP H VV + S E D I + A +
Sbjct: 220 -------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQAQE 270
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 HFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 304
>pdb|3FGS|A Chain A, Crystal Structure Of G65rK206E DOUBLE MUTANT OF THE N-Lobe
Human Transferrin
Length = 337
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDAT---EAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDARLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF++ + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVEHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated)
pdb|2HAV|B Chain B, Apo-Human Serum Transferrin (Glycosylated)
Length = 676
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 149/335 (44%), Gaps = 48/335 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSR--DIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC S +KC +F+D S P C ++ S C++ IA AD +TLD
Sbjct: 1 KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLD 60
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCHTA 208
A +A L NL +P++ E YG+++D +L+G KSCHT
Sbjct: 61 AGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP 268
R+ GW P+ LL L + P K VA FF+G SC P D D P L ++CP
Sbjct: 119 LGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQLCP 172
Query: 269 KATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
T +CLK G GDVAF+K + E L +K R
Sbjct: 173 GCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADRD- 218
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ E LC R PV + DC+L VP H VV + S E D I + A +
Sbjct: 219 -------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQAQE 269
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
F K K + F+LF S GK D+LF + A G +P
Sbjct: 270 HFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 303
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 136/348 (39%), Gaps = 66/348 (18%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC + + + EC ++++ C+ I +G AD ++LD
Sbjct: 337 KPVKWCALSHHERLKCDEWSVNSVGK-----IECVSAETTEDCIAKIMNGEADAMSLDGG 391
Query: 157 EAVLGRKNLNLRPILKEKYGN--------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
+ K L P+L E Y E + LKG KSCHTA
Sbjct: 392 FVYIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 450
Query: 209 YMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
RT GW P+ GL+ K + C + EFF+ G C PG +KD +SL K+
Sbjct: 451 VGRTAGWNIPM------GLLYNKINHCRF----DEFFSEG-CAPG---SKKD--SSLCKL 494
Query: 267 C-----------PKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
C K YT +CL GDVAF+K V +
Sbjct: 495 CMGSGLNLCEPNNKEGYYGYTGAFRCLVE-KGDVAFVKHQTVPQ---------------- 537
Query: 315 SKGGRAP---VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDT 371
+ GG+ P + + E LC G R PV + A+C+L P H VVT K
Sbjct: 538 NTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKI 597
Query: 372 IRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+R + F LF S D+LF + + L D+ T
Sbjct: 598 LRQQQHLFGSNVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 643
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated)
pdb|2HAU|B Chain B, Apo-Human Serum Transferrin (Non-Glycosylated)
Length = 676
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 149/335 (44%), Gaps = 48/335 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSR--DIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC S +KC +F+D S P C ++ S C++ IA AD +TLD
Sbjct: 1 KTVRWCAVSEHEATKCQSFRDHXKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLD 60
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCHTA 208
A +A L NL +P++ E YG+++D +L+G KSCHT
Sbjct: 61 AGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQXNQLRGKKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP 268
R+ GW P+ LL L + P K VA FF+G SC P D D P L ++CP
Sbjct: 119 LGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQLCP 172
Query: 269 KATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
T +CLK G GDVAF+K + E L +K R
Sbjct: 173 GCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADRD- 218
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ E LC R PV + DC+L VP H VV + + D I + A +
Sbjct: 219 -------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSXGG--KEDLIWELLNQAQE 269
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
F K K + F+LF S GK D+LF + A G +P
Sbjct: 270 HFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 303
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 134/348 (38%), Gaps = 66/348 (18%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC + + + EC ++++ C+ I +G AD +LD
Sbjct: 337 KPVKWCALSHHERLKCDEWSVNSVGK-----IECVSAETTEDCIAKIXNGEADAXSLDGG 391
Query: 157 EAVLGRKNLNLRPILKEKYGN--------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
+ K L P+L E Y E + LKG KSCHTA
Sbjct: 392 FVYIAGK-CGLVPVLAENYDKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 450
Query: 209 YMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
RT GW P GL+ K + C + EFF+ G C PG +KD+ SL K+
Sbjct: 451 VGRTAGWNIPX------GLLYNKINHCRF----DEFFSEG-CAPG---SKKDS--SLCKL 494
Query: 267 CP-----------KATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
C K YT +CL GDVAF+K V +
Sbjct: 495 CXGSGLNLCEPNNKEGYYGYTGAFRCLVE-KGDVAFVKHQTVPQ---------------- 537
Query: 315 SKGGRAP---VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDT 371
+ GG+ P + + E LC G R PV + A+C+L P H VVT K
Sbjct: 538 NTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKI 597
Query: 372 IRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+R + F LF S D+LF + + L D+ T
Sbjct: 598 LRQQQHLFGSDVTDCSGNFCLFRSET--KDLLFRDDTVCLAKLHDRNT 643
>pdb|2O7U|B Chain B, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|A Chain A, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|C Chain C, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|D Chain D, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|E Chain E, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|F Chain F, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|G Chain G, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|H Chain H, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|I Chain I, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
Length = 337
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF++ + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVEHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFEDSAHGFLKVP 306
>pdb|2O84|X Chain X, Crystal Structure Of K206e Mutant Of N-Lobe Human
Transferrin
Length = 337
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF++ + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVEHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|1SUV|C Chain C, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|D Chain D, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1A8E|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe
pdb|1A8F|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe
Length = 329
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 149/335 (44%), Gaps = 48/335 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC S +KC +F+D S P C ++ S C++ IA AD +TLD
Sbjct: 2 KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLD 61
Query: 155 A---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCHTA 208
A +A L NL +P++ E YG+++D +L+G KSCHT
Sbjct: 62 AGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTG 119
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP 268
R+ GW P+ LL L + P K VA FF+G SC P D D P L ++CP
Sbjct: 120 LGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQLCP 173
Query: 269 KATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
T +CLK G GDVAF+K + E L +K R
Sbjct: 174 GCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADRD- 219
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ E LC R PV + DC+L VP H VV + S E D I + A +
Sbjct: 220 -------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQAQE 270
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 HFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 304
>pdb|1N7W|A Chain A, Crystal Structure Of Human Serum Transferrin, N-Lobe L66w
Mutant
Length = 331
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 149/335 (44%), Gaps = 48/335 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC S +KC +F+D S P C ++ S C++ IA AD +TLD
Sbjct: 4 KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLD 63
Query: 155 A---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCHTA 208
A +A L NL +P++ E YG+++D +L+G KSCHT
Sbjct: 64 AGWVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTG 121
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP 268
R+ GW P+ LL L + P K VA FF+G SC P D D P L ++CP
Sbjct: 122 LGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQLCP 175
Query: 269 KATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
T +CLK G GDVAF+K + E L +K R
Sbjct: 176 GCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADRD- 221
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ E LC R PV + DC+L VP H VV + S E D I + A +
Sbjct: 222 -------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQAQE 272
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
F K K + F+LF S GK D+LF + A G +P
Sbjct: 273 HFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|1B3E|A Chain A, Human Serum Transferrin, N-Terminal Lobe, Expressed In
Pichia Pastoris
Length = 330
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 151/335 (45%), Gaps = 48/335 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC S +KC +F+D S P C ++ S C++ IA AD +TLD
Sbjct: 1 KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLD 60
Query: 155 A---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCHTA 208
A +A L NL +P++ E YG+++D +L+G KSCHT
Sbjct: 61 AGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP 268
R+ GW P+ LL L + P K VA FF+G SC P D D P L ++CP
Sbjct: 119 LGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQLCP 172
Query: 269 KATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
T +CLK G GDVAF+K + E L +K R
Sbjct: 173 GCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR-- 217
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+YE+ LC R PV + DC+L VP H VV + S E D I + A +
Sbjct: 218 ----DNYEL--LCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQAQE 269
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
F K K + F+LF S GK D+LF + A G +P
Sbjct: 270 HFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 303
>pdb|1FQE|A Chain A, Crystal Structures Of Mutant (K206a) That Abolish The
Dilysine Interaction In The N-Lobe Of Human Transferrin
Length = 331
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 149/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+ + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVAHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|1OQG|A Chain A, Crystal Structure Of The D63e Mutant Of The N-Lobe Human
Transferrin
Length = 337
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 150/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
L+A +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LEAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|1D3K|A Chain A, Human Serum Transferrin
Length = 329
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 149/335 (44%), Gaps = 48/335 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC S +KC +F+D S P C ++ S C++ IA AD +TLD
Sbjct: 2 KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLD 61
Query: 155 A---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCHTA 208
A +A L NL +P++ E YG+++D +L+G KSCHT
Sbjct: 62 AGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTG 119
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP 268
R+ GW P+ LL L + P K VA FF+G SC P D D P L ++CP
Sbjct: 120 LGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQLCP 173
Query: 269 KATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
T +CLK G GDVAF++ + E L +K R
Sbjct: 174 GCGCSTLNQYFGYSGAFKCLKDGAGDVAFVQHSTI-------------FENLANKADRD- 219
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ E LC R PV + DC+L VP H VV + S E D I + A +
Sbjct: 220 -------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQAQE 270
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 HFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 304
>pdb|1B1X|A Chain A, Structure Of Diferric Mare Lactoferrin At 2.62a Resolution
pdb|1B7Z|A Chain A, Structure Of Oxalate Substituted Diferric Mare Lactoferrin
From Colostrum
pdb|1B7U|A Chain A, Structure Of Mare Apolactoferrin: The N And C Lobes Are In
The Closed Form
pdb|1QJM|A Chain A, Crystal Structure Of A Complex Of Lactoferrin With A
Lanthanide Ion (Sm3+) At 3.4 Anstrom Resolution
pdb|1I6B|A Chain A, Structure Of Equine Apolactoferrin At 3.2 A Resolution
Using Crystals Grown At 303k
pdb|3CR9|A Chain A, Crystal Structure Of The Complex Of Lactoferrin With 6-
(Hydroxymethyl)oxane-2,3,4,5-Tetrol At 3.49 A Resolution
Length = 689
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 144/341 (42%), Gaps = 47/341 (13%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIR----PPFECNREKSSKVCLKLIADGAADV 150
P K +RWC SP +KC A F R+++ P C R+ SS C++ IA AD
Sbjct: 2 PRKSVRWCTISPAEAAKC-----AKFQRNMKKVRGPSVSCIRKTSSFECIQAIAANKADA 56
Query: 151 ITLDATEAV-LGRKNLNLRPILKEKY---GNEKDLXXXXXXXXXXXXXXXEELKGLKSCH 206
+TLD G LRP+ E Y G + +L+G+KSCH
Sbjct: 57 VTLDGGLVYEAGLHPYKLRPVAAEVYQTRGKPQTRYYAVAVVKKGSGFQLNQLQGVKSCH 116
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPA 261
T R+ GW P+ L P K VA FF+ SCVP D ++ +
Sbjct: 117 TGLGRSAGWNIPIGTLRPYLNWTGPPEPLQKAVANFFS-ASCVPCADGKQYPNLCRLCAG 175
Query: 262 SLEKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKG 317
+ C +++ Y +CL++G GDVAF+K V + + DE E
Sbjct: 176 TEADKCACSSQEPYFGYSGAFKCLENGAGDVAFVKDSTVFENL------PDEAER----- 224
Query: 318 GRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAIL 377
YE+ LC R PV +C+L VP H VV + D I +
Sbjct: 225 --------DKYEL--LCPDNTRKPVDAFKECHLARVPSHAVVARSVDGRE--DLIWKLLH 272
Query: 378 SAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQ 417
A + F + K F+LFGS G+ D+LF + A G +P Q
Sbjct: 273 RAQEEFGRNKSSAFQLFGSTPGEQDLLFKDSALGFVRIPSQ 313
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 127/360 (35%), Gaps = 64/360 (17%)
Query: 37 RNYISQLNKLGESSGNDWLI---NVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVV 93
RN S G + G L+ + LG + +D+ L N + V
Sbjct: 280 RNKSSAFQLFGSTPGEQDLLFKDSALGFVRIPSQIDSGLYLGANYLTATQNLRETAAEVA 339
Query: 94 KPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITL 153
+ + WC PE KC + D + +R + C +++ C+ L+ G AD + L
Sbjct: 340 ARRERVVWCAVGPEEERKCKQWSDVS-NRKV----ACASASTTEECIALVLKGEADALNL 394
Query: 154 DATEAVLGRKNLNLRPILKEKYGNE------------KDLXXXXXXXXXXXXXXXEELKG 201
D + K L P+L E ++ + L G
Sbjct: 395 DGGFIYVAGK-CGLVPVLAENQKSQNSNAPDCVHRPPEGYLAVAVVRKSDADLTWNSLSG 453
Query: 202 LKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGID-------- 253
KSCHT RT W P+ L + SC + K F SC PG D
Sbjct: 454 KKSCHTGVGRTAAWNIPMGLLFNQ----TGSCKFDK-----FFSQSCAPGADPQSSLCAL 504
Query: 254 ------EEEKDAPASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFK 306
E K P S E+ YT +CL GDVAF+K V V L
Sbjct: 505 CVGNNENENKCMPNSEERY------YGYTGAFRCLAEKAGDVAFVKDVTV-------LQN 551
Query: 307 TDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSN 366
TD K + E LC G R PV++A C+L P H VV+ + ++
Sbjct: 552 TD------GKNSEPWAKDLKQEDFELLCLDGTRKPVAEAESCHLARAPNHAVVSQSDRAQ 605
>pdb|1OQH|A Chain A, Crystal Structure Of The R124a Mutant Of The N-lobe Human
Transferrin
Length = 337
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 149/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T + GW P+ LL L + P K VA FF+G SC P D D P L ++
Sbjct: 120 TGLGASAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFSG-SCAPCADG--TDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP H VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSHTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|1JQF|A Chain A, Human Transferrin N-Lobe Mutant H249q
Length = 334
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 149/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+ GSC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFS-GSCAPCAD--GTDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ E LC R PV + DC+L VP VV + S E D I + A
Sbjct: 221 D--------QYELLCLDNTRKPVDEYKDCHLAQVPSQTVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resolution
Length = 676
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 148/335 (44%), Gaps = 48/335 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAA--FSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC + SKC F+D+ + P C ++ S C+K IA AD +TLD
Sbjct: 4 KTVRWCAVNDHEASKCANFRDSMKKVLPEDGPRIICVKKASYLDCIKAIAAHEADAVTLD 63
Query: 155 A---TEAVLGRKNLNLRPILKEKYG---NEKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
A EA G NL+P++ E YG N K EL+G KSCHT
Sbjct: 64 AGLVHEA--GLTPNNLKPVVAEFYGSKENPKTFYYAVALVKKGSNFQLNELQGKKSCHTG 121
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP 268
R+ GW P+ LL + + P K VA FF+ GSCVP D D P L ++CP
Sbjct: 122 LGRSAGWNIPIGLLLCD--LPEPRKPLEKAVASFFS-GSCVPCAD--GADFP-QLCQLCP 175
Query: 269 KATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
+ P +CLK G GDVAF+KQ + I E L DE +
Sbjct: 176 GCGCSSVQPYFGYSGAFKCLKDGLGDVAFVKQ----ETIFENLPSKDERD---------- 221
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ E LC R PV + C+L VP H VV + + D I + A +
Sbjct: 222 -------QYELLCLDNTRKPVDEYEQCHLARVPSHAVVARSVDG--KEDLIWELLNQAQE 272
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
F K K F+LF S GK ++LF + A G +P
Sbjct: 273 HFGKDKSGDFQLFSSPHGK-NLLFKDSAYGFFKVP 306
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 111/286 (38%), Gaps = 51/286 (17%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
K ++WC KC +S EC ++ + C+ I +G AD ++LD
Sbjct: 340 KAVKWCALGHHERLKC-----DEWSVTSGGLIECESAETPEDCIAKIMNGEADAMSLDGG 394
Query: 157 EAVLGRKNLNLRPILKEKYGN-------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTAY 209
+ + L P+L E Y + E+ L+G KSCHTA
Sbjct: 395 YVYIAGQ-CGLVPVLAENYESTDCKKAPEEGYLSVAVVKKSNPDINWNNLEGKKSCHTAV 453
Query: 210 MRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASL-EKI 266
RT GW P+ GL+ + + C + EFF G C PG + + +
Sbjct: 454 DRTAGWNIPM------GLLYNRINHCRF----DEFFRQG-CAPGSQKNSSLCELCVGPSV 502
Query: 267 CPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPV 322
C R Y +CL GDVAF+K V L + GGR
Sbjct: 503 CAPNNREGYYGYTGAFRCLVE-KGDVAFVKSQTV----------------LQNTGGRNSE 545
Query: 323 SKAGDY---EIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKS 365
A D + E LC G R PVS+A +C+L P H VV+ K+
Sbjct: 546 PWAKDLKEEDFELLCLDGTRKPVSEAHNCHLAKAPNHAVVSRKDKA 591
>pdb|1DTG|A Chain A, Human Transferrin N-Lobe Mutant H249e
Length = 334
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 151/337 (44%), Gaps = 48/337 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFS--RDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D S P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDA---TEAVLGRKNLNLRPILKEKYGNEKD---LXXXXXXXXXXXXXXXEELKGLKSCH 206
LDA +A L NL +P++ E YG+++D +L+G KSCH
Sbjct: 62 LDAGLVYDAYLAPNNL--KPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH 119
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
T R+ GW P+ LL L + P K VA FF+ GSC P D D P L ++
Sbjct: 120 TGLGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVANFFS-GSCAPCAD--GTDFP-QLCQL 173
Query: 267 CPKATRVTYT-------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
CP T +CLK G GDVAF+K + E L +K R
Sbjct: 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTI-------------FENLANKADR 220
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+YE+ LC R PV + DC+L VP VV + S E D I + A
Sbjct: 221 ------DNYEL--LCLDNTRKPVDEYKDCHLAQVPSETVV-ARSMGGKE-DLIWELLNQA 270
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
+ F K K + F+LF S GK D+LF + A G +P
Sbjct: 271 QEHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVP 306
>pdb|1CE2|A Chain A, Structure Of Diferric Buffalo Lactoferrin At 2.5a
Resolution
Length = 689
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 147/339 (43%), Gaps = 43/339 (12%)
Query: 95 PIKPIRWC-VSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITL 153
P K +RWC +S PE + KC ++ + P C R S C++ I + AD +TL
Sbjct: 2 PRKNVRWCTISQPEWL-KCHRWQ-WRMKKLGAPSITCVRRASVLECIRAITEKKADAVTL 59
Query: 154 DATEAV-LGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTAY 209
D GR LRP+ E YG ++ ++L+G SCHT
Sbjct: 60 DGGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQLDQLQGRNSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSC-PYYKGVAEFFTGGSCVPGIDEEEKDAPASL----- 263
R+ GW P+ +L L +S P VA+FF+ SCVP +D + L
Sbjct: 120 GRSAGWNIPM-GILRPYLSWTESLEPLQGAVAKFFSA-SCVPCVDRQAYPNLCQLCKGEG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C + R Y +CL+ G GDVAF+K+ V + + E K D +Y
Sbjct: 178 ENQCACSPREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPE---KADRDQY------- 227
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E LC RAPV +C+L VP H VV + + D I + A
Sbjct: 228 -----------ELLCLNNTRAPVDAFKECHLAQVPSHAVVARSVDG--KEDLIWKLLSKA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQ 417
+ F K K F+LFGS G+ D+LF + A G +P +
Sbjct: 275 QEKFGKNKSGSFQLFGSPPGQRDLLFKDSALGFLRIPSK 313
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 125/337 (37%), Gaps = 65/337 (19%)
Query: 86 EDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIAD 145
E+V R + + WC PE KC +S+ C ++ C+ L+
Sbjct: 336 EEVQARRARVV----WCAVGPEEQKKC-----QQWSQQSGQIVTCATASTTDDCIALVLK 386
Query: 146 GAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD------------LXXXXXXXXXXXX 193
G AD ++LD K L P+L E + K
Sbjct: 387 GEADALSLDGGYIYTAGK-CGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEG 445
Query: 194 XXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPG 251
LKG KSCHTA RT GW P+ GLI + SC + EFF+ SC PG
Sbjct: 446 LTWNSLKGKKSCHTAVDRTAGWNIPM------GLIANQTGSCAF----DEFFS-QSCAPG 494
Query: 252 IDEEEKDAP------ASLEKICPKATRVTY---TPLQCLKSGDGDVAFIKQVKVNKAIEE 302
D + + L+K P + Y +CL GDVAF+K N + E
Sbjct: 495 ADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVK----NDTVWE 550
Query: 303 GLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSN 362
++ + LC G R PV++A C+L V P H VV+ +
Sbjct: 551 NTNGESTADW---------AKNLNREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSLS 601
Query: 363 SKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
++ + +L LF + P+ F LF S
Sbjct: 602 ERAA----HVEQVLLHQQALFGENGKNCPDKFCLFKS 634
>pdb|1TFD|A Chain A, High-Resolution X-Ray Studies On Rabbit Serum Transferrin:
Preliminary Structure Analysis Of The N-Terminal Half-
Molecule At 2.3 Angstroms Resolution
Length = 304
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 146/330 (44%), Gaps = 48/330 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAA--FSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC + SKC F+D+ + P C ++ S C+K IA AD +TLD
Sbjct: 4 KTVRWCAVNDHEASKCANFRDSMKKVLPEDGPRIICVKKASYLDCIKAIAAHEADAVTLD 63
Query: 155 A---TEAVLGRKNLNLRPILKEKYG---NEKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
A EA G NL+P++ E YG N K EL+G KSCHT
Sbjct: 64 AGLVHEA--GLTPNNLKPVVAEFYGSKENPKTFYYAVALVKKGSNFQLNELQGKKSCHTG 121
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP 268
R+ GW P+ LL L + P K VA FF+ GSCVP D D P L ++CP
Sbjct: 122 LGRSAGWNIPI-GLLYCDLPEPRK-PLEKAVASFFS-GSCVPCAD--GADFP-QLCQLCP 175
Query: 269 KATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
+ P +CLK G GDVAF+KQ + I E L DE +
Sbjct: 176 GCGCSSSQPYFGYSGAFKCLKDGLGDVAFVKQ----ETIFENLPSKDERD---------- 221
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ E LC R PV + C+L VP H VV + + D I + A +
Sbjct: 222 -------QYELLCLDNTRKPVDEYEQCHLARVPSHAVVARSVDG--KEDLIWELLNQAQE 272
Query: 382 LFSK-KPEIFKLFGSFMGKPDVLFLNPATG 410
F K K F+LF S GK ++LF + A G
Sbjct: 273 HFGKDKSGDFQLFSSPHGK-NLLFKDSAYG 301
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum
Transferrin
Length = 696
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 147/343 (42%), Gaps = 56/343 (16%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIR--PPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC S + +KC +F++ S+ ++ P C ++ S C+K I D AD +TLD
Sbjct: 4 KTVRWCTISNQEANKCSSFREN-MSKAVKNGPLVSCVKKSSYLDCIKAIRDKEADAVTLD 62
Query: 155 ATEAV-LGRKNLNLRPILKEKYG---NEKDLXXXXXXXXXXXXXXXEELKGLKSCHTAYM 210
A G NL+P++ E YG N + +L+G +SCHT
Sbjct: 63 AGLVFEAGLAPYNLKPVVAEFYGQKDNPQTHYYAVAVVKKGSNFQWNQLQGKRSCHTGLG 122
Query: 211 RTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICP-- 268
R+ GW+ P+ L ++ + + P K VA FF+ SCVP D P + K+C
Sbjct: 123 RSAGWIIPMGLLYDQ--LPEPRKPIEKAVASFFS-SSCVPCAD------PVNFPKLCQQC 173
Query: 269 ------KATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315
K + P CLK GDVAF+K V +E K D +Y
Sbjct: 174 AGKGAEKCACSNHEPYFGYAGAFNCLKEDAGDVAFVKHSTV---LENLPDKADRDQY--- 227
Query: 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHA 375
E LC R PV +C L VP H VV + + D+I
Sbjct: 228 ---------------ELLCRDNTRRPVDDYENCYLAQVPSHAVVARSVDG--QEDSIWEL 270
Query: 376 ILSAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQ 417
+ A + F + K F+LF S GK D+LF + A G +P +
Sbjct: 271 LNQAQEHFGRDKSPDFQLFSSSHGK-DLLFKDSANGFLKIPSK 312
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 117/295 (39%), Gaps = 63/295 (21%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
K +RWC E KC A+S + EC ++++ C+ I G AD ++LD
Sbjct: 344 KKVRWCAIGHEETQKC-----DAWSINSGGKIECVSAENTEDCIAKIVKGEADAMSLDGG 398
Query: 157 EAVLGRKNLNLRPILKEKYGNEKD----------LXXXXXXXXXXXXXXXEELKGLKSCH 206
+ K L P+L E Y E + L LKG KSCH
Sbjct: 399 YIYIAGK-CGLVPVLAENYKTEGENCVNTPEKGYLAVAVVKKSSGPDLNWNNLKGKKSCH 457
Query: 207 TAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLE 264
TA RT GW P+ GL+ K +SC + + F G C PG +SL
Sbjct: 458 TAVDRTAGWNIPM------GLLYNKINSCKF-----DQFFGEGCAPGSQRN-----SSLC 501
Query: 265 KICPKATRV--------------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDE 309
+C + R YT +CL GDVAF+K V + + G K D
Sbjct: 502 ALCIGSERAPGRECLANNHERYYGYTGAFRCLVE-KGDVAFVKDQVVQQNTD-GKNKDDW 559
Query: 310 IEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSK 364
+ L K D+E+ LC G R PV A +C+L P H VV + K
Sbjct: 560 AKDL----------KQMDFEL--LCQNGAREPVDNAENCHLARAPNHAVVARDDK 602
>pdb|1F9B|A Chain A, Melanin Protein Interaction: X-Ray Structure Of The
Complex Of Mare Lactoferrin With Melanin Monomers
Length = 695
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 143/344 (41%), Gaps = 47/344 (13%)
Query: 92 VVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIR----PPFECNREKSSKVCLKLIADGA 147
+ P K +RWC SP +KC A F R+++ P C R+ SS C++ IA
Sbjct: 5 LAAPRKSVRWCTISPAEAAKC-----AKFQRNMKKVRGPSVSCIRKTSSFECIQAIAANK 59
Query: 148 ADVITLDATEAV-LGRKNLNLRPILKEKY---GNEKDLXXXXXXXXXXXXXXXEELKGLK 203
AD +TLD G LRP+ E Y G + +L+G+K
Sbjct: 60 ADAVTLDGGLVYEAGLHPYKLRPVAAEVYQTRGKPQTRYYAVAVVKKGSGFQLNQLQGVK 119
Query: 204 SCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KD 258
SCHT R+ GW P+ L P K VA FF+ SCVP D ++ +
Sbjct: 120 SCHTGLGRSAGWNIPIGTLRPYLNWTGPPEPLQKAVANFFS-ASCVPCADGKQYPNLCRL 178
Query: 259 APASLEKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
+ C +++ Y +CL++G GDVAF+K V + + DE E
Sbjct: 179 CAGTEADKCACSSQEPYFGYSGAFKCLENGAGDVAFVKDSTVFENL------PDEAER-- 230
Query: 315 SKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRH 374
YE+ LC R PV +C+L VP H VV + D I
Sbjct: 231 -----------DKYEL--LCPDNTRKPVDAFKECHLARVPSHAVVARSVDGRE--DLIWK 275
Query: 375 AILSAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQ 417
+ A + F + K F+LF S + D+LF + A G +P Q
Sbjct: 276 LLHRAQEEFGRNKSSAFQLFKSTPEEQDLLFKDSALGFVRIPSQ 319
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 119/337 (35%), Gaps = 61/337 (18%)
Query: 57 NVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFK 116
+ LG + +D+ L N + V + + WC PE KC +
Sbjct: 309 SALGFVRIPSQIDSGLYLGANYLTATQNLRETAAEVAARRERVVWCAVGPEEERKCKQWS 368
Query: 117 DAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYG 176
D + +R + C +++ C+ L+ G AD + LD + K L P+L E
Sbjct: 369 DVS-NRKV----ACASASTTEECIALVLKGEADALNLDGGFIYVAGK-CGLVPVLAENQK 422
Query: 177 NE------------KDLXXXXXXXXXXXXXXXEELKGLKSCHTAYMRTTGWVAPVYNLLE 224
++ + L G KSCHT RT W P+ L
Sbjct: 423 SQNSNAPDCVHRPPEGYLAVAVVRKSDADLTWNSLSGKKSCHTGVGRTAAWNIPMGLLFN 482
Query: 225 KGLIKKDSCPYYKGVAEFFTGGSCVPGID--------------EEEKDAPASLEKICPKA 270
+ SC + K F SC PG D E K P S E+
Sbjct: 483 Q----TGSCKFDK-----FFSQSCAPGADPQSSLCALCVGNNENENKCMPNSEERY---- 529
Query: 271 TRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYE 329
YT +CL GDVAF+K V V L TD K +
Sbjct: 530 --YGYTGAFRCLAEKAGDVAFVKDVTV-------LQNTD------GKNSEPWAKDLKQED 574
Query: 330 IEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSN 366
E LC G R PV++A C+L P H VV+ + ++
Sbjct: 575 FELLCLDGTRKPVAEAESCHLARAPNHAVVSQSDRAQ 611
>pdb|3MC2|A Chain A, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
pdb|3MC2|B Chain B, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
pdb|3MC2|C Chain C, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
pdb|3MC2|D Chain D, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
Length = 687
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 148/339 (43%), Gaps = 52/339 (15%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKD--AAFSRDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K IRWCV S +KC +F+D P C R+ S C++ I+ D +T
Sbjct: 8 PEKTIRWCVVSDHEATKCSSFRDNMKKVLPAGGPAVTCVRKMSHPECIRDISANKVDAVT 67
Query: 153 LDATEAVLGRKNL---NLRPILKEKYGNEKDLXXX---XXXXXXXXXXXXEELKGLKSCH 206
+D A++ +L +L+PI+ E YG++ D +L+G KSCH
Sbjct: 68 VDG--ALVAEADLPHHSLKPIMAEYYGSKDDPKTHYYVVAMAKKGTGFQLNQLRGKKSCH 125
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASL--- 263
T + GW P+ LL G + A FF+ SCVP D + + L
Sbjct: 126 TGLGWSAGWYVPLSTLLPSGSRE-------TAAATFFS-SSCVPCADGKMFPSLCQLCAG 177
Query: 264 --EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKG 317
C ++R Y L+CL+ G DV+F+K + V +A+ K D +Y
Sbjct: 178 KGTDKCACSSREPYFGSWGALKCLQDGTADVSFVKHLTVFEAMPT---KADRDQY----- 229
Query: 318 GRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAIL 377
E LC R PV + C L VP H+VV + + D+I+ +
Sbjct: 230 -------------ELLCMDNTRRPVEEYEQCYLARVPSHVVVARSVDG--KEDSIQELLR 274
Query: 378 SAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
A + F K K F+LFGS G+ D+LF + A G+ +P
Sbjct: 275 VAQEHFGKDKSSPFQLFGSPHGE-DLLFTDAAHGLLRVP 312
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 140/362 (38%), Gaps = 70/362 (19%)
Query: 89 IGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAA 148
+ R ++ + ++WC + +KC + + C E++ + C+ G A
Sbjct: 332 LKRGLEDSQRVKWCAVGQQERTKCDQWSAVSGG-----ALACATEETPEDCIAATMKGEA 386
Query: 149 DVITLDATEAVLGRKNLNLRPILKEKY---------GNE------KDLXXXXXXXXXXXX 193
D ++LD A + + L P+L E Y G++ +
Sbjct: 387 DAMSLDGGFAYVA-GHCGLVPVLAENYLSTHSSGRLGSKCVNAPLEGYYVVAVVKKSDVG 445
Query: 194 XXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPG 251
+ L+G KSCHTA + GW P+ GLI + SC + + F SC PG
Sbjct: 446 ITWKSLQGKKSCHTAVGTSEGWNVPM------GLIYDQTGSCKF-----DAFFSRSCAPG 494
Query: 252 IDEEE--------KDAPASLEKICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKA 299
D + + PA + C Y L+CL GDVAF+K V
Sbjct: 495 SDPDSPLCALCVGGNNPAHM---CAANNAEGYHGSSGALRCLVE-KGDVAFMKHPTV--- 547
Query: 300 IEEGLFKTDEIEYLCSKGGRAPVSKAGDYE-IEYLCSKGGRAPVSKAADCNLGVVPPHMV 358
L TD P +K +E E LC G R PV++A C+L VP V
Sbjct: 548 ----LQNTD-------GKNPEPWAKGLKHEDFELLCLDGTRKPVTEAQSCHLARVPNRAV 596
Query: 359 VTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKP-DVLFLNPATGVEVLPDQ 417
+ K+ D +R + + +LF + + +F F D+LF + + L D+
Sbjct: 597 FSRKDKA----DFVRRILFNQQELFGRNGFEYMMFQMFESSAKDLLFSDDTECLSNLQDK 652
Query: 418 AT 419
T
Sbjct: 653 TT 654
>pdb|1BIY|A Chain A, Structure Of Diferric Buffalo Lactoferrin
Length = 689
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 145/339 (42%), Gaps = 43/339 (12%)
Query: 95 PIKPIRWC-VSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITL 153
P K +RWC +S PE + KC ++ + P C R C++ I + AD +TL
Sbjct: 2 PRKNVRWCTISQPEWL-KCHRWQ-WRMKKLGAPSITCVRRAFVLECIRAITEKKADAVTL 59
Query: 154 DATEAV-LGRKNLNLRPILKEKYGNEKDLXX---XXXXXXXXXXXXXEELKGLKSCHTAY 209
D G LRP+ E YG ++ ++L+G SCHT
Sbjct: 60 DGGMVFEAGLDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQLDQLQGRNSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSC-PYYKGVAEFFTGGSCVPGIDEEEKDAPASL----- 263
R+ GW P+ +L L +S P VA+FF+ SCVP +D + L
Sbjct: 120 GRSAGWNIPM-GILRPYLSWTESLEPLQGAVAKFFSA-SCVPCVDRQAYPNLCQLCKGEG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
E C + R Y +CL+ G GDVAF+K+ V + + E K D +Y
Sbjct: 178 ENQCACSPREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPE---KADRDQY------- 227
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E LC RAPV +C+L VP H VV + + D I + A
Sbjct: 228 -----------ELLCLNNTRAPVDAFKECHLAQVPSHAVVARSVDG--KEDLIWKLLSKA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQ 417
+ F K K F+LFGS G+ D+LF + A G +P +
Sbjct: 275 QEKFGKNKSGSFQLFGSPPGQRDLLFKDSALGFLRIPSK 313
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 125/337 (37%), Gaps = 65/337 (19%)
Query: 86 EDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIAD 145
E+V R + + WC PE KC +S+ C ++ C+ L+
Sbjct: 336 EEVQARRARVV----WCAVGPEEQKKC-----QQWSQQSGQIVTCATASTTDDCIALVLK 386
Query: 146 GAADVITLDATEAVLGRKNLNLRPILKEKYGNEKD------------LXXXXXXXXXXXX 193
G AD ++LD K L P+L E + K
Sbjct: 387 GEADALSLDGGYIYTAGK-CGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEG 445
Query: 194 XXXEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPG 251
LKG KSCHTA RT GW P+ GLI + SC + EFF+ SC PG
Sbjct: 446 LTWNSLKGKKSCHTAVDRTAGWNIPM------GLIANQTGSCAF----DEFFS-QSCAPG 494
Query: 252 IDEEEKDAP------ASLEKICPKATRVTY---TPLQCLKSGDGDVAFIKQVKVNKAIEE 302
D + + L+K P + Y +CL GDVAF+K N + E
Sbjct: 495 ADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVK----NDTVWE 550
Query: 303 GLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSN 362
++ + LC G R PV++A C+L V P H VV+ +
Sbjct: 551 NTNGESTADW---------AKNLNREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSLS 601
Query: 363 SKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGS 395
++ + +L LF + P+ F LF S
Sbjct: 602 ERAA----HVEQVLLHQQALFGENGKNCPDKFCLFKS 634
>pdb|1NNT|A Chain A, Structural Evidence For A Ph-Sensitive Di-Lysine Trigger
In The Hen Ovotransferrin N-Lobe: Implications For
Transferrin Iron Release
Length = 328
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 113/269 (42%), Gaps = 50/269 (18%)
Query: 99 IRWC-VSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATE 157
IRWC +SSPE KC +D ++ R C ++ + C+K IA+ AD I+LD +
Sbjct: 3 IRWCTISSPE-EKKCNNLRD--LTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQ 59
Query: 158 AV-LGRKNLNLRPILKEKYGNEKDLXXXXXXXXXX---XXXXXEELKGLKSCHTAYMRTT 213
A G L+PI E Y + + +L+G SCHT R+
Sbjct: 60 AFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSA 119
Query: 214 GWVAPVYNLLEKGLIKKD---SCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKIC--- 267
GW P+ LL +G I+ + S + VA+FF+ SCVPG E+K L + C
Sbjct: 120 GWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSA-SCVPGATIEQK-----LCRQCKGD 173
Query: 268 PKATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
PK P CLK G GDVAF+K VN+ A
Sbjct: 174 PKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNE--------------------NA 213
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCN 349
P K E E LC G R PV CN
Sbjct: 214 PDQKD---EYELLCLDGSRQPVDNYKTCN 239
>pdb|1IEJ|A Chain A, Ovotransferrin, N-Terminal Lobe, Holo Form, At 1.65 A
Resolution
Length = 332
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 113/273 (41%), Gaps = 50/273 (18%)
Query: 95 PIKPIRWC-VSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITL 153
P IRWC +SSPE KC +D ++ R C ++ + C+K IA+ AD ITL
Sbjct: 3 PKSVIRWCTISSPE-EKKCNNLRD--LTQQERISLTCVQKATYLDCIKAIANNEADAITL 59
Query: 154 DATEAV-LGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXXXXXX---EELKGLKSCHTAY 209
D + G L+PI E Y + + +L+G SCHT
Sbjct: 60 DGGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKD---SCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
R+ GW P+ LL +G I+ + S + VA+FF+ SCVPG E+K L +
Sbjct: 120 GRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSA-SCVPGATIEQK-----LCRQ 173
Query: 267 C---PKATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSK 316
C PK P CLK G GDVAF+K VN+
Sbjct: 174 CKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNE------------------ 215
Query: 317 GGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCN 349
AP K E E LC G R PV CN
Sbjct: 216 --NAPDQKD---EYELLCLDGSRQPVDNYKTCN 243
>pdb|1N04|A Chain A, Diferric Chicken Serum Transferrin At 2.8 A Resolution.
pdb|1RYX|A Chain A, Crystal Structure Of Hen Serum Transferrin In Apo- Form
pdb|1AIV|A Chain A, Apo Ovotransferrin
pdb|1OVT|A Chain A, Refined Crystallographic Structure Of Hen Ovotransferrin
At 2.4 Angstroms Resolution
Length = 686
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 114/273 (41%), Gaps = 50/273 (18%)
Query: 95 PIKPIRWC-VSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITL 153
P IRWC +SSPE KC +D ++ R C ++ + C+K IA+ AD I+L
Sbjct: 3 PKSVIRWCTISSPE-EKKCNNLRD--LTQQERISLTCVQKATYLDCIKAIANNEADAISL 59
Query: 154 DATEAV-LGRKNLNLRPILKEKYGNEKDLXXX---XXXXXXXXXXXXEELKGLKSCHTAY 209
D +A G L+PI E Y + + +L+G SCHT
Sbjct: 60 DGGQAFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKD---SCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
R+ GW P+ LL +G I+ + S + VA+FF+ SCVPG E+K L +
Sbjct: 120 GRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSA-SCVPGATIEQK-----LCRQ 173
Query: 267 C---PKATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSK 316
C PK P CLK G GDVAF+K VN+
Sbjct: 174 CKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNE------------------ 215
Query: 317 GGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCN 349
AP K E E LC G R PV CN
Sbjct: 216 --NAPDQKD---EYELLCLDGSRQPVDNYKTCN 243
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 128/331 (38%), Gaps = 89/331 (26%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDA--- 155
I+WC + SKC + + D+ EC +K C+ I G AD + LD
Sbjct: 345 IQWCAVGKDEKSKCDRWS-VVSNGDV----ECTVVDETKDCIIKIMKGEADAVALDGGLV 399
Query: 156 -TEAVLGRKNLNLRPILKEKYGNEKDLXX---------XXXXXXXXXXXXXEELKGLKSC 205
T V G L P++ E+Y +E LKG KSC
Sbjct: 400 YTAGVCG-----LVPVMAERYDDESQCSKTDERPASYFAVAVARKDSNVNWNNLKGKKSC 454
Query: 206 HTAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEE-------- 255
HTA RT GWV P+ GLI + +C + E+F+ G C PG
Sbjct: 455 HTAVGRTAGWVIPM------GLIHNRTGTCNF----DEYFSEG-CAPGSPPNSRLCQLCQ 503
Query: 256 -------EKDAPASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKT 307
EK +S EK YT L+CL GDVAFI+ V +
Sbjct: 504 GSGGIPPEKCVASSHEKY------FGYTGALRCLVE-KGDVAFIQHSTVEE--------- 547
Query: 308 DEIEYLCSKGGRAPVSKAGDYEI---EYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSK 364
+ GG+ A + ++ E LC+ G RA V +CNL VP H VV K
Sbjct: 548 -------NTGGKNKADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVRPEK 600
Query: 365 SNVEIDTIRHAILSAADLFSKKPEIFKLFGS 395
+N IR DL ++ + F + GS
Sbjct: 601 AN----KIR-------DLLERQEKRFGVNGS 620
>pdb|1NFT|A Chain A, Ovotransferrin, N-Terminal Lobe, Iron Loaded Open Form
pdb|1TFA|A Chain A, Ovotransferrin, N-Terminal Lobe, Apo Form
Length = 329
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 112/269 (41%), Gaps = 50/269 (18%)
Query: 99 IRWC-VSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATE 157
IRWC VSSPE KC +D ++ R C ++ + C+K IA+ AD I+LD +
Sbjct: 4 IRWCTVSSPE-EKKCNNLRD--LTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQ 60
Query: 158 AV-LGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXXXXXX---EELKGLKSCHTAYMRTT 213
G L+PI E Y + + +L+G SCHT R+
Sbjct: 61 VFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSA 120
Query: 214 GWVAPVYNLLEKGLIKKD---SCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKIC--- 267
GW P+ L+ +G I+ + S + VA+FF+ SCVPG E+K L + C
Sbjct: 121 GWNIPIGTLIHRGAIEWEGIESGSVEQAVAKFFSA-SCVPGATIEQK-----LCRQCKGD 174
Query: 268 PKATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
PK P CLK G GDVAF+K VN+ A
Sbjct: 175 PKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNE--------------------NA 214
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCN 349
P K E E LC G R PV CN
Sbjct: 215 PDQKD---EYELLCLDGSRQPVDNYKTCN 240
>pdb|2D3I|A Chain A, Crystal Structure Of Aluminum-Bound Ovotransferrin At 2.15
Angstrom Resolution
Length = 686
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 113/273 (41%), Gaps = 50/273 (18%)
Query: 95 PIKPIRWC-VSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITL 153
P IRWC +SSPE KC +D ++ R C ++ + C+K IA+ AD I+L
Sbjct: 3 PKSVIRWCTISSPE-EKKCNNLRD--LTQQERISLTCVQKATYLDCIKAIANNEADAISL 59
Query: 154 DATEAV-LGRKNLNLRPILKEKYGNEKDLXXX---XXXXXXXXXXXXEELKGLKSCHTAY 209
D + G L+PI E Y + + +L+G SCHT
Sbjct: 60 DGGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKD---SCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
R+ GW P+ L+ +G I+ + S + VA+FF+ SCVPG E+K L +
Sbjct: 120 GRSAGWNIPIGTLIHRGAIEWEGIESGSVEQAVAKFFSA-SCVPGATIEQK-----LCRQ 173
Query: 267 C---PKATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSK 316
C PK P CLK G GDVAF+K VN+
Sbjct: 174 CKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNE------------------ 215
Query: 317 GGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCN 349
AP K E E LC G R PV CN
Sbjct: 216 --NAPDQKD---EYELLCLDGSRQPVDNYKTCN 243
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 128/331 (38%), Gaps = 89/331 (26%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDA--- 155
I+WC + SKC + + D+ EC +K C+ I G AD + LD
Sbjct: 345 IQWCAVGKDEKSKCDRWS-VVSNGDV----ECTVVDETKDCIIKIMKGEADAVALDGGLV 399
Query: 156 -TEAVLGRKNLNLRPILKEKYGNEKDLXX---------XXXXXXXXXXXXXEELKGLKSC 205
T V G L P++ E+Y +E LKG KSC
Sbjct: 400 YTAGVCG-----LVPVMAERYDDESQCSKTDERPASYFAVAVARKDSNVNWNNLKGKKSC 454
Query: 206 HTAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEE-------- 255
HTA RT GWV P+ GLI + +C + E+F+ G C PG
Sbjct: 455 HTAVGRTAGWVIPM------GLIHNRTGTCNF----DEYFSEG-CAPGSPPNSRLCQLCQ 503
Query: 256 -------EKDAPASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKT 307
EK +S EK YT L+CL GDVAFI+ V +
Sbjct: 504 GSGGIPPEKCVASSHEKY------FGYTGALRCLVE-KGDVAFIQHSTVEE--------- 547
Query: 308 DEIEYLCSKGGRAPVSKAGDYEI---EYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSK 364
+ GG+ A + ++ E LC+ G RA V +CNL VP H VV K
Sbjct: 548 -------NTGGKNKADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVRPEK 600
Query: 365 SNVEIDTIRHAILSAADLFSKKPEIFKLFGS 395
+N IR DL ++ + F + GS
Sbjct: 601 AN----KIR-------DLLERQEKRFGVNGS 620
>pdb|1AOV|A Chain A, Apo Duck Ovotransferrin
pdb|1DOT|A Chain A, Crystallographic Structure Of Duck Ovotransferrin At 2.3
Angstroms Resolution
Length = 686
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 137/341 (40%), Gaps = 50/341 (14%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
P +RWC S KC + KD + R C ++ + C+K I++ AD I+LD
Sbjct: 3 PKTTVRWCTISSAEEKKCNSLKD--HMQQERVTLSCVQKATYLDCIKAISNNEADAISLD 60
Query: 155 ATEAV-LGRKNLNLRPILKEKY---GNEKDLXXXXXXXXXXXXXXXEELKGLKSCHTAYM 210
+ G L+PI E Y G ++L+G SCHT
Sbjct: 61 GGQVFEAGLAPYKLKPIAAEVYERSGGSTTSYYAVAVVKKGTDFMIKDLRGKTSCHTGLG 120
Query: 211 RTTGWVAPVYNLLEKGLIKKD---SCPYYKGVAEFFTGGSCVPGIDEEEK-------DAP 260
R+ GW P+ L+ + I+ + S + VA+FF+ SCVPG E+K DA
Sbjct: 121 RSAGWNIPIGTLIHREDIEWEGIESGISEQAVAKFFSA-SCVPGATIEQKLCRQCKGDAK 179
Query: 261 ASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
+ P + QCLK G GDVAF+K V + A
Sbjct: 180 TKCLRNGPYSGYSG--AFQCLKDGKGDVAFVKHTTVQE--------------------NA 217
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAI-LSA 379
P K E E LC G R PV CN V H VV + + +ID I + + A
Sbjct: 218 PEEKD---EYELLCLDGSRQPVDSYKTCNWARVAAHAVVARD---DSKIDDIWSFLGMQA 271
Query: 380 ADLFSKKPEIFKLFGSFMGK----PDVLFLNPATGVEVLPD 416
L F LFG K D+LF + A ++ +P+
Sbjct: 272 YSLGVDTTSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPE 312
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 127/334 (38%), Gaps = 69/334 (20%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDA--- 155
I+WC + SKC +S EC +K C+ I G AD I+LD
Sbjct: 345 IQWCAVGKDEKSKC-----DRWSVVSNGEVECTILDDNKDCIVKITKGEADAISLDGGFV 399
Query: 156 -TEAVLGRKNLNLRPILKEKYGNEKDLXX---------XXXXXXXXXXXXXEELKGLKSC 205
T V G L P++ E Y +E L+G KSC
Sbjct: 400 YTAGVCG-----LVPVVGESYEDETQCSKDEEQPAYYFAVAVVKKSSAITWNNLQGKKSC 454
Query: 206 HTAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEK------ 257
HTA RT GW P+ GLI K SC + ++F+ G C PG +
Sbjct: 455 HTAVGRTAGWNIPM------GLIHNKTGSCDF----DDYFSEG-CAPGSPPNSRLCKLCQ 503
Query: 258 DAPASLEKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYL 313
+ +L + C ++ Y L+CL GDVAFIK V + + G K D + L
Sbjct: 504 GSGENLLEKCVASSHEKYYGYTGALRCLVE-QGDVAFIKHSTVGENVS-GSNKDDWAKGL 561
Query: 314 CSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIR 373
+ E LC+ G RA C+L VP H VV K+N IR
Sbjct: 562 TRD------------DFELLCTNGKRAKTMDYKTCHLAKVPTHAVVARPEKAN----KIR 605
Query: 374 HAILSAADLF---SKKPEIFKLFGSFMGKPDVLF 404
+ LF + E F +F S D+LF
Sbjct: 606 ELLEGQEKLFGLHGTEKERFMMFQS--QTKDLLF 637
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 343
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 136/348 (39%), Gaps = 66/348 (18%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC +S + EC ++++ C+ I +G AD ++LD
Sbjct: 4 KPVKWCALSHHERLKC-----DEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGG 58
Query: 157 EAVLGRKNLNLRPILKEKYGN--------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
+ K L P+L E Y E + LKG KSCHTA
Sbjct: 59 FVYIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 117
Query: 209 YMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
RT GW P+ GL+ K + C + EFF+ G C PG +KD +SL K+
Sbjct: 118 VGRTAGWNIPM------GLLYNKINHCRF----DEFFSEG-CAPG---SKKD--SSLCKL 161
Query: 267 C-----------PKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
C K YT +CL GDVAF+K V +
Sbjct: 162 CMGSGLNLCEPNNKEGYYGYTGAFRCLVE-KGDVAFVKHQTVPQ---------------- 204
Query: 315 SKGGRAP---VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDT 371
+ GG+ P + + E LC G R PV + A+C+L P H VVT K
Sbjct: 205 NTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKI 264
Query: 372 IRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+R + F LF S D+LF + + L D+ T
Sbjct: 265 LRQQQHLFGSNVTDCSGNFCLFRSET--KDLLFRDDTVCLAKLHDRNT 310
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound
Sulfate Ions
Length = 342
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 136/348 (39%), Gaps = 66/348 (18%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC +S + EC ++++ C+ I +G AD ++LD
Sbjct: 3 KPVKWCALSHHERLKC-----DEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGG 57
Query: 157 EAVLGRKNLNLRPILKEKYGN--------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTA 208
+ K L P+L E Y E + LKG KSCHTA
Sbjct: 58 FVYIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 116
Query: 209 YMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
RT GW P+ GL+ K + C + EFF+ G C PG +KD +SL K+
Sbjct: 117 VGRTAGWNIPM------GLLYNKINHCRF----DEFFSEG-CAPG---SKKD--SSLCKL 160
Query: 267 C-----------PKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLC 314
C K YT +CL GDVAF+K V +
Sbjct: 161 CMGSGLNLCEPNNKEGYYGYTGAFRCLVE-KGDVAFVKHQTVPQ---------------- 203
Query: 315 SKGGRAP---VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDT 371
+ GG+ P + + E LC G R PV + A+C+L P H VVT K
Sbjct: 204 NTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKI 263
Query: 372 IRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+R + F LF S D+LF + + L D+ T
Sbjct: 264 LRQQQHLFGSNVTDCSGNFCLFRSET--KDLLFRDDTVCLAKLHDRNT 309
>pdb|1SDX|A Chain A, Crystal Structure Of The Zinc Saturated C-Terminal Half Of
Bovine Lactoferrin At 2.0 A Resolution Reveals Two
Additional Zinc Binding Sites
pdb|3TOD|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With 1- Butyl-1h-Pyrazole-5-Carboxylic Acid At
1.38 A Resolution
pdb|3U72|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Isoniazid At 2.2 A Resolution
pdb|3U8Q|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Phenyl-Propanolamine At 1.97 A Resolution
pdb|3UGW|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Deoxycytidine At 1.87 A Resolution
pdb|3UK4|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With 1,2, 5-Pentanetriol At 1.98 A Resolution
pdb|3USD|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Imidazol (1,2 A) Pyridine3-Yl-Acitic Acid
At 2.4 A Resolution
pdb|3V5A|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Gamma Amino Butyric Acid At 1.44 A
Resolution
pdb|3VDF|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Diaminopimelic Acid At 1.46 A Resolution
pdb|4DIG|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With N- Acetylmuramyl L-Alanyl D-Isoglutamine
At 1.8 A Resolution
pdb|4DXU|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Aminocaproic Acid At 1.46 A Resolution
pdb|4FIM|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Celecoxib Acid At 1.80 A Resolution
pdb|4FJP|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Naproxen At 1.68 A Resolution
pdb|4FOR|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Flurbiprofen At 1.58 A Resolution
pdb|4G2Z|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Mefenamic Acid At 1.90 A Resolution
pdb|4GRK|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Ketorolac At 1.68 A Resolution
Length = 335
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 122/324 (37%), Gaps = 61/324 (18%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158
+ WC PE KC +S+ C ++ C+ L+ G AD + LD
Sbjct: 4 VVWCAVGPEEQKKC-----QQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYI 58
Query: 159 VLGRKNLNLRPILKEKYGNEKD------------LXXXXXXXXXXXXXXXEELKGLKSCH 206
K L P+L E + K LK KSCH
Sbjct: 59 YTAGK-CGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCH 117
Query: 207 TAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAP---- 260
TA RT GW P+ GLI + SC + EFF+ SC PG D + +
Sbjct: 118 TAVDRTAGWNIPM------GLIVNQTGSCAF----DEFFS-QSCAPGADPKSRLCALCAG 166
Query: 261 --ASLEKICPKATRVTY---TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315
L+K P + Y +CL GDVAF+K N + E ++
Sbjct: 167 DDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVK----NDTVWENTNGESTADW--- 219
Query: 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHA 375
A K D+ + LC G R PV++A C+L V P H VV+ + ++ +
Sbjct: 220 ----AKNLKREDFRL--LCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAA----HVEQV 269
Query: 376 ILSAADLFSKK----PEIFKLFGS 395
+L LF K P+ F LF S
Sbjct: 270 LLHQQALFGKNGKNCPDKFCLFKS 293
>pdb|1NKX|A Chain A, Crystal Structure Of A Proteolytically Generated
Functional Monoferric C-Lobe Of Bovine Lactoferrin At
1.9a Resolution
pdb|2ALU|A Chain A, Detection Of New Binding Site In The C-Terminal Lobe Of
Lactoferrin:crystal Structure Of The Complex Formed
Between Bovine Lactoferrin And A Tetrasaccharide At 2.1a
Resolution
pdb|2AYS|A Chain A, A Conserved Non-Metallic Binding Site In The C-Terminal
Lobe Of Lactoferrin: Structure Of The Complex Of
C-Terminal Lobe Of Bovine Lactoferrin With N-Acetyl
Galactosamine At 1.86 A Resolution
pdb|2Q8J|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Bovine
Lactoferrin With Mannitol And Mannose At 2.7 A
Resolution
pdb|2QJE|A Chain A, Crystal Structure Of The Complex Of Bovine C-Lobe With
Amygdalin At 2.3a Resolution
Length = 348
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 122/324 (37%), Gaps = 61/324 (18%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158
+ WC PE KC +S+ C ++ C+ L+ G AD + LD
Sbjct: 4 VVWCAVGPEEQKKC-----QQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYI 58
Query: 159 VLGRKNLNLRPILKEKYGNEKD------------LXXXXXXXXXXXXXXXEELKGLKSCH 206
K L P+L E + K LK KSCH
Sbjct: 59 YTAGK-CGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCH 117
Query: 207 TAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAP---- 260
TA RT GW P+ GLI + SC + EFF+ SC PG D + +
Sbjct: 118 TAVDRTAGWNIPM------GLIVNQTGSCAF----DEFFS-QSCAPGADPKSRLCALCAG 166
Query: 261 --ASLEKICPKATRVTY---TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315
L+K P + Y +CL GDVAF+K N + E ++
Sbjct: 167 DDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVK----NDTVWENTNGESTADW--- 219
Query: 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHA 375
A K D+ + LC G R PV++A C+L V P H VV+ + ++ +
Sbjct: 220 ----AKNLKREDFRL--LCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAA----HVEQV 269
Query: 376 ILSAADLFSKK----PEIFKLFGS 395
+L LF K P+ F LF S
Sbjct: 270 LLHQQALFGKNGKNCPDKFCLFKS 293
>pdb|2B65|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Bovine
Lactoferrin With Maltose At 1.5a Resolution
pdb|2FA7|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoferrin
C-Lobe With A Pentasaccharide At 2.38 A Resolution
pdb|2DOJ|A Chain A, Crystal Structure Of The Complex Of C-Terminal Lobe Of
Bovine Lactoferrin With Adenosine At 2.4 A Resolution
pdb|2DP8|A Chain A, Carbohydrate Recognition By Lactoferrin: Crystal Structure
Of The Complex Of C-Terminal Lobe Of Bovine Lactoferrin
With Trisaccharide At 2.5 A Resolution
pdb|2G93|A Chain A, Ligand Recognition Site In C-Lobe Of Lactoferrin: Crystal
Structure Of The Complex Of C-Lobe Of Bovine Lactoferrin
With Methyl Alpha-D- Mannopyranoside At 1.9 A Resolution
pdb|2H4I|A Chain A, Crystal Structure Of The Complex Of Proteolytically
Produced C- Terminal Half Of Bovine Lactoferrin With
Lactose At 2.55 A Resolution
pdb|2HCA|A Chain A, Crystal Structure Of Bovine Lactoferrin C-Lobe Liganded
With Glucose At 2.8 A Resolution
pdb|2DQV|A Chain A, Structure Of The C-Terminal Lobe Of Bovine Lactoferrin In
Complex With Galactose At 2.7 A Resolution
pdb|2DS9|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Mannose At 2.8 A Resolution
pdb|2DSF|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Xylose At 2.8a Resolution
pdb|2DVC|A Chain A, Structure Of The Bovine Lactoferrin C-Lobe Complex With
Sucrose At 3.0 A Resolution
pdb|2DWA|A Chain A, Structure Of The Complex Of Lactoferrin C-Terminal Half
With Fucose At 2.07 A Resolution
pdb|2DWH|A Chain A, Crystal Structure Of N-Acetylglucosamine Complex Of Bovine
Lactoferrin C-Lobe At 2.8 A Resolution
pdb|2DWI|A Chain A, Crystal Structure Of The Complex Formed Between C-Terminal
Half Of Bovine Lactoferrin And Cellobiose At 2.2 A
Resolution
pdb|2DWJ|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Raffinose At 2.3 A Resolution
pdb|2DXR|A Chain A, Crystal Structure Of The Complex Formed Between C-Terminal
Half Of Bovine Lactoferrin And Sorbitol At 2.85 A
Resolution
pdb|2DXY|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Trehalose At 2.0 A Resolution
pdb|2DYX|A Chain A, Structure Of The Complex Of Lactoferrin C-lobe With
Melibiose At 2.0 A Resolution
pdb|2E0S|A Chain A, Carbohydrate Recognition Of C-Terminal Half Of
Lactoferrin: Crystal Structure Of The Complex Of C-Lobe
With Rhamnose At 2.15 A Resolution
pdb|2E1S|A Chain A, Crystal Structure Of The Complex Of C-Terminal Half Of
Bovine Lactoferrin And Arabinose At 2.7 A Resolution
pdb|2NWJ|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Disaccharide At 1.75 A Resolution
pdb|2NUV|A Chain A, Crystal Structure Of The Complex Of C-Terminal Lobe Of
Bovine Lactoferrin With Atenolol At 2.25 A Resolution
pdb|2O1L|A Chain A, Structure Of A Complex Of C-terminal Lobe Of Bovine
Lactoferrin With Disaccharide At 1.97 A Resolution
pdb|2O51|A Chain A, Crystal Structure Of Bovine C-Lobe With Fructose At 3.0 A
Resolution
pdb|2OCU|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With N-(4-Hydroxyphenyl) Acetamide At 2.38 A
Resolution
pdb|2PX1|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoferrin
C-Lobe With Ribose At 2.5 A Resolution
pdb|2R71|A Chain A, Crystal Structure Of The Complex Of Bovine C-lobe With
Inositol At 2.1a Resolution
pdb|2R9J|A Chain A, Ligand Recognition In C-Lobe: The Crystal Structure Of The
Complex Of Lactoferrin C-Lobe With Nicotinamide At 2.5 A
Resolution
pdb|3CFL|A Chain A, Crystal Structure Of The Complex Formed Between C-lobe Of
Bovine Lactoferrin And
5-chloro-6'-methyl-3-[4-(methylsulfonyl)phenyl]-2,3'-
Bipyridine At 2.25 A Resolution
pdb|3CI8|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Lactoferrin
With Vitamin B3 (Niacin) At 2.4 A Resolution
pdb|3CRB|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Lactoferrin
With 2- Chromenone At 2.6 A Resolution
pdb|2ZMB|A Chain A, Crystal Structure Of The Complex Of C-Terminal Lobe Of
Bovine Lactoferrin With Parecoxib At 2.9 A Resolution
pdb|3E9X|A Chain A, Crystal Structure Of The Complex Of C-lobe Of Lactoferrin
With Nimesulide At 2.7 A Resolution
pdb|3IB2|A Chain A, Structure Of The Complex Of C-Terminal Half (C-Lobe) Of
Bovine Lactoferrin With Alpha-Methyl-4-(2-Methylpropyl)
Benzene Acetic Acid
pdb|3IAZ|A Chain A, Structural Basis Of The Prevention Of Nsaid-induced Damage
Of The Gastrointestinal Tract By C-terminal Half
(c-lobe) Of Bovine Colostrum Protein Lactoferrin:
Binding And Structural Studies Of The C-lobe Complex
With Aspirin
pdb|3IB0|A Chain A, Structural Basis Of The Prevention Of Nsaid-Induced Damage
Of The Gastrointestinal Tract By C-Terminal Half
(C-Lobe) Of Bovine Colostrum Protein Lactoferrin:
Binding And Structural Studies Of C- Lobe Complex With
Diclofenac
pdb|3IB1|A Chain A, Structural Basis Of The Prevention Of Nsaid-Induced Damage
Of The Gastrointestinal Tract By C-Terminal Half
(C-Lobe) Of Bovine Colostrum Protein Lactoferrin:
Binding And Structural Studies Of C- Lobe Complex With
Indomethacin
pdb|3K0V|A Chain A, Removal Of Sugars And Sugars-Like Molecules From The
Solution By C- Lobe Of Lactoferrin: Crystal Structure Of
The Complex Of C-Lobe With
Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1-
>4)-Alpha-D- Glucopyranose At 1.9 A Resolution
pdb|3KJ7|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Bovine
Lactoferrin With Dextrin At 1.9 A Resolution
pdb|3MJN|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Lactoferrin
With Isopropylamino-3-(1-Naphthyloxy)propan-2-Ol At 2.38
A Resolution
pdb|3O97|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Lactoferrin
With Indole Acetic Acid At 2.68 A Resolution
pdb|3RGY|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Lipopolysaccharide At 2.0 A Resolution
pdb|3SDF|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Lipoteichoic Acid At 2.1 A Resolution
pdb|3TAJ|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Nabumetone At 1.7a Resolution
pdb|3TTR|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Lidocaine At 2.27 A Resolution
pdb|3TUS|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Meta- Hydroxy Benzoic Acid At 2.5 A
Resolution
pdb|4G77|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Tolfenamic Acid At 1.98 A Resolution
pdb|4G8H|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Licofelone At 1.88 A Resolution
Length = 345
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 122/324 (37%), Gaps = 61/324 (18%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158
+ WC PE KC +S+ C ++ C+ L+ G AD + LD
Sbjct: 4 VVWCAVGPEEQKKC-----QQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYI 58
Query: 159 VLGRKNLNLRPILKEKYGNEKD------------LXXXXXXXXXXXXXXXEELKGLKSCH 206
K L P+L E + K LK KSCH
Sbjct: 59 YTAGK-CGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCH 117
Query: 207 TAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAP---- 260
TA RT GW P+ GLI + SC + EFF+ SC PG D + +
Sbjct: 118 TAVDRTAGWNIPM------GLIVNQTGSCAF----DEFFS-QSCAPGADPKSRLCALCAG 166
Query: 261 --ASLEKICPKATRVTY---TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315
L+K P + Y +CL GDVAF+K N + E ++
Sbjct: 167 DDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVK----NDTVWENTNGESTADW--- 219
Query: 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHA 375
A K D+ + LC G R PV++A C+L V P H VV+ + ++ +
Sbjct: 220 ----AKNLKREDFRL--LCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAA----HVEQV 269
Query: 376 ILSAADLFSKK----PEIFKLFGS 395
+L LF K P+ F LF S
Sbjct: 270 LLHQQALFGKNGKNCPDKFCLFKS 293
>pdb|2P1S|A Chain A, Crystal Structure Of The C-Terminal Lobe Of Bovine
Lactoferrin Complexed With O-Alpha-D-Glucopyranosyl-(1
3)-Alpha-D- Fructofuranosyl- (2 1)-
Alpha-D-Glucopyranoside At 1.93 A Resolution
Length = 344
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 122/324 (37%), Gaps = 61/324 (18%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158
+ WC PE KC +S+ C ++ C+ L+ G AD + LD
Sbjct: 4 VVWCAVGPEEQKKC-----QQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYI 58
Query: 159 VLGRKNLNLRPILKEKYGNEKD------------LXXXXXXXXXXXXXXXEELKGLKSCH 206
K L P+L E + K LK KSCH
Sbjct: 59 YTAGK-CGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCH 117
Query: 207 TAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAP---- 260
TA RT GW P+ GLI + SC + EFF+ SC PG D + +
Sbjct: 118 TAVDRTAGWNIPM------GLIVNQTGSCAF----DEFFS-QSCAPGADPKSRLCALCAG 166
Query: 261 --ASLEKICPKATRVTY---TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315
L+K P + Y +CL GDVAF+K N + E ++
Sbjct: 167 DDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVK----NDTVWENTNGESTADW--- 219
Query: 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHA 375
A K D+ + LC G R PV++A C+L V P H VV+ + ++ +
Sbjct: 220 ----AKNLKREDFRL--LCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAA----HVEQV 269
Query: 376 ILSAADLFSKK----PEIFKLFGS 395
+L LF K P+ F LF S
Sbjct: 270 LLHQQALFGKNGKNCPDKFCLFKS 293
>pdb|1IQ7|A Chain A, Ovotransferrin, C-Terminal Lobe, Apo Form
Length = 345
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 126/331 (38%), Gaps = 89/331 (26%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDA--- 155
I+WC + SKC +S EC +K C+ I G AD + LD
Sbjct: 4 IQWCAVGKDEKSKC-----DRWSVVSNGDVECTVVDETKDCIIKIMKGEADAVALDGGLV 58
Query: 156 -TEAVLGRKNLNLRPILKEKYGNEKDLXXX---------XXXXXXXXXXXXEELKGLKSC 205
T V G L P++ E+Y +E LKG KSC
Sbjct: 59 YTAGVCG-----LVPVMAERYDDESQCSKTDERPASYFAVAVARKDSNVNWNNLKGKKSC 113
Query: 206 HTAYMRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEE-------- 255
HTA RT GWV P+ GLI + +C + E+F+ G C PG
Sbjct: 114 HTAVGRTAGWVIPM------GLIHNRTGTCNF----DEYFSEG-CAPGSPPNSRLCQLCQ 162
Query: 256 -------EKDAPASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKT 307
EK +S EK YT L+CL GDVAFI+ V +
Sbjct: 163 GSGGIPPEKCVASSHEKY------FGYTGALRCLVE-KGDVAFIQHSTVEE--------- 206
Query: 308 DEIEYLCSKGGRAPVSKAGDYEI---EYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSK 364
+ GG+ A + ++ E LC+ G RA V +CNL VP H VV K
Sbjct: 207 -------NTGGKNKADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVRPEK 259
Query: 365 SNVEIDTIRHAILSAADLFSKKPEIFKLFGS 395
+N IR DL ++ + F + GS
Sbjct: 260 AN----KIR-------DLLERQEKRFGVNGS 279
>pdb|1GV8|A Chain A, 18 Kda Fragment Of N-Ii Domain Of Duck Ovotransferrin
Length = 159
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 197 EELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKK---DSCPYYKGVAEFFTGGSCVPGID 253
++L+G SCHT R+ GW P+ L+ +G I+ +S + VA+FF+ SCVPG
Sbjct: 17 KDLRGKTSCHTGLGRSAGWNIPIGTLIHRGDIEWEGIESGSVEQAVAKFFS-ASCVPGAT 75
Query: 254 EEEK-------DAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFK 306
E+K DA + P + QCLK G GDVAF+K V + E +
Sbjct: 76 TEQKLCRQCKGDAKTKCLRNAPYSGYS--GAFQCLKDGKGDVAFVKHTTVQENAPE---E 130
Query: 307 TDEIEYLCSKGGRAPV 322
DE E LC G R PV
Sbjct: 131 KDEYELLCLDGTRQPV 146
>pdb|1GVC|A Chain A, 18kda N-Ii Domain Fragment Of Duck Ovotransferrin + Nta
Length = 157
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 197 EELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKK---DSCPYYKGVAEFFTGGSCVPGID 253
++L+G SCHT R+ GW P+ L+ +G I+ +S + VA+FF+ SCVPG
Sbjct: 17 KDLRGKTSCHTGLGRSAGWNIPIGTLIHRGDIEWEGIESGSVEQAVAKFFS-ASCVPGAT 75
Query: 254 EEEK-------DAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFK 306
E+K DA + P + QCLK G GDVAF+K V + E +
Sbjct: 76 TEQKLCRQCKGDAKTKCLRNAPYSGYS--GAFQCLKDGKGDVAFVKHTTVQENAPE---E 130
Query: 307 TDEIEYLCSKGGRAPV 322
DE E LC G R PV
Sbjct: 131 KDEYELLCLDGTRQPV 146
>pdb|1SUV|E Chain E, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|F Chain F, Structure Of Human Transferrin Receptor-transferrin
Complex
Length = 345
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 111/286 (38%), Gaps = 51/286 (17%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
K ++WC KC +S EC ++ + C+ I +G AD ++LD
Sbjct: 9 KAVKWCALGHHERLKC-----DEWSVTSGGLIECESAETPEDCIAKIMNGEADAMSLDGG 63
Query: 157 EAVLGRKNLNLRPILKEKYGN-------EKDLXXXXXXXXXXXXXXXEELKGLKSCHTAY 209
+ + L P+L E Y + E+ L+G KSCHTA
Sbjct: 64 YVYIAGQ-CGLVPVLAENYESTDCKKAPEEGYLSVAVVKKSNPDINWNNLEGKKSCHTAV 122
Query: 210 MRTTGWVAPVYNLLEKGLI--KKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASL-EKI 266
RT GW P+ GL+ + + C + EFF G C PG + + +
Sbjct: 123 DRTAGWNIPM------GLLYNRINHCRF----DEFFRQG-CAPGSQKNSSLCELCVGPSV 171
Query: 267 CPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPV 322
C R Y +CL GDVAF+K V L + GGR
Sbjct: 172 CAPNNREGYYGYTGAFRCLVE-KGDVAFVKSQTV----------------LQNTGGRNSE 214
Query: 323 SKAGDY---EIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKS 365
A D + E LC G R PVS+A +C+L P H VV+ K+
Sbjct: 215 PWAKDLKEEDFELLCLDGTRKPVSEAHNCHLAKAPNHAVVSRKDKA 260
>pdb|1LGB|C Chain C, Interaction Of A Legume Lectin With The N2 Fragment Of
Human Lactotransferrin Or With The Isolated Biantennary
Glycopeptide: Role Of The Fucose Moiety
Length = 159
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 198 ELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE- 256
EL+GLKSCHT RT GW P+ L P VA FF+ SCVPG D+ +
Sbjct: 18 ELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQF 76
Query: 257 ----KDAPASLEKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTD 308
+ + E C +++ Y +CLK G GDVAFI++ V + + + + D
Sbjct: 77 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLKDGAGDVAFIRESTVFEDLSDEA-ERD 135
Query: 309 EIEYLCSKGGRAPVSKAGDYEI 330
E E LC R PV K D +
Sbjct: 136 EYELLCPDNTRKPVDKFKDCHL 157
>pdb|1OVB|A Chain A, The Mechanism Of Iron Uptake By Transferrins: The
Structure Of An 18kd Nii-Domain Fragment At 2.3
Angstroms Resolution
Length = 159
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 197 EELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKK---DSCPYYKGVAEFFTGGSCVPGID 253
++L+G SCHT R+ GW P+ L+ + I+ +S + VA+FF+ SCVPG
Sbjct: 17 KDLRGKTSCHTGLGRSAGWNIPIGTLIHREDIEWEGIESGSVEQAVAKFFS-ASCVPGAT 75
Query: 254 EEEK-------DAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFK 306
E+K DA + P + QCLK G GDVAF+K V + E +
Sbjct: 76 IEQKLCRQCKGDAKTKCLRNAPYSGYS--GAFQCLKDGKGDVAFVKHTTVQENAPE---E 130
Query: 307 TDEIEYLCSKGGRAPV 322
DE E LC G R PV
Sbjct: 131 KDEYELLCLDGSRQPV 146
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 28/117 (23%)
Query: 286 GDVAFIKQV-KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSK 344
GDV FI ++ ++NKA+EE L+ E D++I+ + KG P +K
Sbjct: 103 GDVLFIDEIHRLNKAVEELLYSAIE-----------------DFQIDIMIGKG---PSAK 142
Query: 345 AADCNLGVVPPHMVVTSNSKSNVEIDTIRHA--ILSAADLFSKKP--EIFKLFGSFM 397
+ + + P +V + ++S + +R A I+ D ++ K EI K S M
Sbjct: 143 SIRID---IQPFTLVGATTRSGLLSSPLRSAFGIILELDFYTVKELKEIIKRAASLM 196
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 28/117 (23%)
Query: 286 GDVAFIKQV-KVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSK 344
GDV FI ++ ++NKA+EE L+ E D++I+ + KG P +K
Sbjct: 103 GDVLFIDEIHRLNKAVEELLYSAIE-----------------DFQIDIMIGKG---PSAK 142
Query: 345 AADCNLGVVPPHMVVTSNSKSNVEIDTI--RHAILSAADLFSKKP--EIFKLFGSFM 397
+ + + P +V S ++S + + R I+ D ++ K EI K S M
Sbjct: 143 SIRID---IQPFTLVGSTTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM 196
>pdb|2X8S|A Chain A, Crystal Structure Of The Abn2 D171a Mutant In Complex With
Arabinotriose
pdb|2X8S|B Chain B, Crystal Structure Of The Abn2 D171a Mutant In Complex With
Arabinotriose
Length = 470
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 363 SKSNVEIDTIRHA-ILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDV 421
S D +H +++ F K +++ ++GS+ G +L +NP TG LP Q
Sbjct: 155 SSDGTPYDATKHPNVVAPHTFFDKDGKLWMVYGSYSGGIFILEMNPKTGFP-LPGQG--- 210
Query: 422 ETNYSNNMLSKVHAR 436
Y +L H+R
Sbjct: 211 ---YGKKLLGGNHSR 222
>pdb|2X8F|A Chain A, Native Structure Of Endo-1,5-Alpha-L-Arabinanases From
Bacillus Subtilis
pdb|2X8F|B Chain B, Native Structure Of Endo-1,5-Alpha-L-Arabinanases From
Bacillus Subtilis
Length = 470
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 363 SKSNVEIDTIRHA-ILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDV 421
S D +H ++ F K +++ ++GS+ G +L +NP TG LP Q
Sbjct: 155 SSDGTPYDATKHPNVVDPHTFFDKDGKLWMVYGSYSGGIFILEMNPKTGFP-LPGQG--- 210
Query: 422 ETNYSNNMLSKVHAR 436
Y +L H+R
Sbjct: 211 ---YGKKLLGGNHSR 222
>pdb|2X8T|A Chain A, Crystal Structure Of The Abn2 H318a Mutant
pdb|2X8T|B Chain B, Crystal Structure Of The Abn2 H318a Mutant
Length = 471
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 363 SKSNVEIDTIRHA-ILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDV 421
S D +H ++ F K +++ ++GS+ G +L +NP TG LP Q
Sbjct: 155 SSDGTPYDATKHPNVVDPHTFFDKDGKLWMVYGSYSGGIFILEMNPKTGFP-LPGQG--- 210
Query: 422 ETNYSNNMLSKVHAR 436
Y +L H+R
Sbjct: 211 ---YGKKLLGGNHSR 222
>pdb|3IWZ|A Chain A, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|B Chain B, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|C Chain C, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|D Chain D, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
Length = 230
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 70 NKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFE 129
+K+ L T+ + + DV R+V+ + + PE MS + +++
Sbjct: 142 SKRLLDTTRKASRLAFLDVTDRIVRTLHDL---SKEPEAMSHPQGTQLRVSRQELARLVG 198
Query: 130 CNREKSSKVCLKLIADG 146
C+RE + +V KL ADG
Sbjct: 199 CSREMAGRVLKKLQADG 215
>pdb|2RDN|A Chain A, Crystal Structure Of Ptlh With Akg And Ent-1pl Bound
pdb|2RDQ|A Chain A, Crystal Structure Of Ptlh With FeALPHA KETOGLUTARATE BOUND
pdb|2RDR|A Chain A, Crystal Structure Of Ptlh With Fe/oxalylglycine Bound
pdb|2RDS|A Chain A, Crystal Structure Of Ptlh With FeOXALYLGLYCINE AND ENT-1-
Deoxypentalenic Acid Bound
Length = 288
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 350 LGVVPPHMVVTSNSKSNVE-IDTIRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPA 408
LG PH + + + E +D + D F P K+F G+P +FL +
Sbjct: 59 LGAADPHATLEELTIDSFESVDEVAMHDYVKYDAFWNNPSTIKVFEQVFGEPVFVFL--S 116
Query: 409 TGVEVLPDQATDVETNY 425
T + P QA E ++
Sbjct: 117 TTIRYYPSQAGSEEPSF 133
>pdb|3GCZ|A Chain A, Yokose Virus Methyltransferase In Complex With Adomet
Length = 282
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 53 DWLINVLGIDSNSTAVDNKKTLH----PTQYLQKANYEDVIGRVVKPIKPI 99
D L+ +G S S AV+ ++TL Q+LQ+ NY + +V+ P P+
Sbjct: 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPL 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,600,471
Number of Sequences: 62578
Number of extensions: 576299
Number of successful extensions: 1806
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 137
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)