Query psy11925
Match_columns 458
No_of_seqs 230 out of 678
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:29:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mc2_A Inhibitor of carbonic a 100.0 2.8E-99 1E-103 822.0 26.7 390 3-448 240-677 (687)
2 3v83_A Serotransferrin; iron b 100.0 6.4E-98 2E-102 814.3 27.0 392 3-450 253-690 (698)
3 2d3i_A Ovotransferrin; aluminu 100.0 1E-93 3.5E-98 781.5 28.1 390 3-450 235-677 (686)
4 1blf_A Lactoferrin; transferri 100.0 8.3E-93 2.8E-97 776.1 29.7 394 2-449 237-680 (689)
5 1cb6_A Protein (lactoferrin); 100.0 3.3E-93 1.1E-97 778.1 23.8 392 4-449 239-682 (691)
6 3tod_A Lactotransferrin; C-LOB 100.0 1.7E-86 5.8E-91 670.7 24.9 300 97-444 2-334 (335)
7 3skp_A Serotransferrin; iron b 100.0 2E-86 6.8E-91 671.8 23.4 304 97-449 3-333 (342)
8 1iej_A Ovotransferrin; iron, m 100.0 1.3E-81 4.3E-86 637.2 24.8 299 97-430 5-329 (332)
9 1h45_A Lactoferrin; metal tran 100.0 4.5E-80 1.5E-84 626.6 22.5 305 95-430 3-330 (334)
10 1ryo_A Serotransferrin; iron t 100.0 1.1E-78 3.8E-83 614.8 20.5 301 95-430 2-324 (327)
11 1cb6_A Protein (lactoferrin); 100.0 7.6E-78 2.6E-82 657.0 24.6 303 97-430 4-329 (691)
12 2d3i_A Ovotransferrin; aluminu 100.0 2E-77 6.9E-82 653.3 25.4 300 95-430 3-329 (686)
13 3mc2_A Inhibitor of carbonic a 100.0 4.2E-77 1.4E-81 648.1 26.4 299 95-429 8-329 (687)
14 3v83_A Serotransferrin; iron b 100.0 5.7E-77 1.9E-81 649.5 23.0 304 95-430 21-343 (698)
15 1blf_A Lactoferrin; transferri 100.0 1.8E-76 6.2E-81 647.2 25.6 305 95-430 2-329 (689)
16 1iej_A Ovotransferrin; iron, m 99.3 1.8E-12 6.2E-17 131.0 4.3 84 3-92 235-331 (332)
17 3tod_A Lactotransferrin; C-LOB 99.2 1.9E-12 6.6E-17 130.7 2.1 84 3-93 239-332 (335)
18 3skp_A Serotransferrin; iron b 99.2 3.1E-12 1.1E-16 129.5 3.0 83 4-93 234-326 (342)
19 1h45_A Lactoferrin; metal tran 99.2 5.7E-12 1.9E-16 127.6 4.5 84 4-93 240-333 (334)
20 1ryo_A Serotransferrin; iron t 99.1 1.2E-11 4.1E-16 124.8 3.2 83 3-92 234-326 (327)
21 3p7i_A PHND, subunit of alkylp 99.1 3.6E-10 1.2E-14 113.3 11.1 187 125-380 45-238 (321)
22 2j4u_S Lactotransferrin, lacto 99.0 2.7E-12 9.3E-17 92.7 -5.0 44 95-139 2-45 (45)
23 3n5l_A Binding protein compone 99.0 1.1E-09 3.9E-14 108.8 8.8 186 126-379 36-228 (310)
24 3ksx_A Nitrate transport prote 97.8 0.00013 4.3E-09 71.6 12.0 131 127-298 59-191 (324)
25 3qsl_A Putative exported prote 97.5 0.0006 2.1E-08 66.4 12.3 192 126-386 64-263 (346)
26 3ix1_A N-formyl-4-amino-5-amin 97.5 0.00055 1.9E-08 66.1 10.9 95 127-227 35-130 (302)
27 3uif_A Sulfonate ABC transport 97.4 0.00094 3.2E-08 66.2 12.2 127 127-295 45-176 (348)
28 3un6_A Hypothetical protein sa 97.4 0.00038 1.3E-08 68.8 8.7 132 125-298 81-215 (341)
29 4ddd_A Immunogenic protein; ss 97.3 0.00092 3.1E-08 66.5 10.8 228 95-385 30-291 (327)
30 1us5_A Putative GLUR0 ligand b 97.2 0.0015 5.3E-08 63.0 10.1 125 127-293 51-188 (314)
31 2x26_A Periplasmic aliphatic s 97.0 0.003 1E-07 60.8 10.4 131 127-298 33-165 (308)
32 3del_B Arginine binding protei 96.7 0.01 3.5E-07 54.2 11.3 119 127-299 51-172 (242)
33 2vha_A Periplasmic binding tra 96.5 0.029 1E-06 52.9 12.9 122 127-299 64-189 (287)
34 3kzg_A Arginine 3RD transport 96.5 0.014 4.7E-07 53.4 10.1 121 127-299 44-165 (237)
35 4eq9_A ABC transporter substra 96.4 0.0067 2.3E-07 55.3 7.5 128 126-299 47-176 (246)
36 3h7m_A Sensor protein; histidi 96.2 0.042 1.4E-06 49.4 11.9 120 127-299 51-172 (234)
37 3qax_A Probable ABC transporte 96.2 0.022 7.6E-07 52.5 10.2 119 127-299 71-193 (268)
38 2qpq_A Protein BUG27; alpha/be 96.1 0.098 3.3E-06 51.5 14.9 213 95-380 6-254 (301)
39 2f5x_A BUGD; periplasmic bindi 96.0 0.1 3.5E-06 51.7 14.3 213 95-380 15-263 (312)
40 3hv1_A Polar amino acid ABC up 96.0 0.0083 2.8E-07 56.0 6.0 125 127-299 61-189 (268)
41 2yjp_A Putative ABC transporte 95.8 0.018 6.2E-07 55.0 7.8 121 127-299 98-219 (291)
42 1ii5_A SLR1257 protein; membra 95.8 0.044 1.5E-06 49.2 10.0 117 127-299 45-169 (233)
43 4esw_A Pyrimidine biosynthesis 95.8 0.013 4.5E-07 57.9 6.9 95 127-227 39-134 (342)
44 1wdn_A GLNBP, glutamine bindin 95.7 0.074 2.5E-06 47.3 11.0 117 128-299 43-164 (226)
45 2pvu_A ARTJ; basic amino acid 95.7 0.04 1.4E-06 51.6 9.6 121 127-299 81-203 (272)
46 2dvz_A BUGE, putative exported 95.5 0.15 5.2E-06 50.5 13.4 213 95-380 17-267 (314)
47 4f3p_A Glutamine-binding perip 95.4 0.094 3.2E-06 48.1 10.7 118 127-299 63-185 (249)
48 3tql_A Arginine-binding protei 95.3 0.063 2.2E-06 47.8 9.0 122 127-299 42-165 (227)
49 2yln_A Putative ABC transporte 95.3 0.035 1.2E-06 52.8 7.6 120 127-299 97-217 (283)
50 2v25_A Major cell-binding fact 95.1 0.036 1.2E-06 50.6 6.8 120 127-298 82-206 (259)
51 2y7i_A STM4351; arginine-bindi 95.0 0.13 4.5E-06 46.0 10.1 120 127-299 46-167 (229)
52 3mpk_A Virulence sensor protei 94.6 0.19 6.4E-06 46.9 10.6 121 127-299 72-194 (267)
53 3k4u_A Binding component of AB 94.6 0.22 7.6E-06 45.3 10.6 118 127-299 45-170 (245)
54 2pyy_A Ionotropic glutamate re 94.1 0.13 4.3E-06 45.9 7.8 117 127-299 41-165 (228)
55 2g29_A Nitrate transport prote 93.6 0.45 1.6E-05 48.4 11.8 129 127-296 64-215 (417)
56 3myu_A High affinity transport 92.5 0.25 8.4E-06 49.5 7.4 32 194-225 175-206 (344)
57 4dz1_A DALS D-alanine transpor 91.8 0.25 8.6E-06 45.8 6.4 73 127-207 69-143 (259)
58 1xs5_A 29 kDa protein, membran 91.8 0.24 8.2E-06 47.2 6.3 94 126-229 30-127 (241)
59 3hn0_A Nitrate transport prote 91.8 1.2 4.1E-05 42.6 11.4 120 127-297 34-155 (283)
60 2q88_A EHUB, putative ABC tran 91.1 0.39 1.3E-05 43.9 6.8 118 128-299 54-180 (257)
61 2nxo_A Hypothetical protein SC 91.0 0.19 6.6E-06 48.4 4.8 87 133-226 39-126 (291)
62 2czl_A Hypothetical protein TT 90.7 0.073 2.5E-06 50.2 1.4 175 127-387 31-208 (272)
63 3eki_A High affinity transport 90.6 0.63 2.1E-05 47.4 8.1 32 194-225 238-269 (403)
64 2x7q_A Ca3427, possible thiami 90.5 0.69 2.4E-05 44.8 8.3 81 127-212 45-129 (321)
65 2xxp_A CPS2A; replication, pep 90.1 0.3 1E-05 50.1 5.4 73 182-294 17-91 (398)
66 4i62_A Amino acid ABC transpor 89.6 0.19 6.6E-06 46.1 3.3 121 127-299 82-205 (269)
67 1p99_A Hypothetical protein PG 89.0 0.26 8.8E-06 48.4 3.8 94 126-229 65-163 (295)
68 1zbm_A Hypothetical protein AF 87.9 0.11 3.8E-06 49.2 0.3 74 127-212 39-114 (280)
69 2iee_A ORF2, probable ABC tran 87.7 0.23 8E-06 46.4 2.5 72 127-206 64-137 (271)
70 4gvo_A LMO2349 protein; struct 87.6 0.74 2.5E-05 42.2 5.8 65 134-207 56-124 (243)
71 1xt8_A Putative amino-acid tra 87.2 0.36 1.2E-05 45.5 3.5 121 127-299 87-208 (292)
72 3g3k_A Glutamate receptor, ion 83.5 0.37 1.3E-05 44.3 1.6 61 133-203 68-131 (259)
73 3kbr_A Cyclohexadienyl dehydra 83.0 0.47 1.6E-05 42.7 2.0 118 127-299 55-180 (239)
74 1lst_A Lysine, arginine, ornit 82.9 0.33 1.1E-05 43.7 0.9 122 127-298 44-167 (239)
75 4h5g_A Amino acid ABC superfam 82.6 8.8 0.0003 34.8 10.6 115 134-299 61-178 (243)
76 2de3_A Dibenzothiophene desulf 80.4 1.5 5.3E-05 43.7 4.9 26 183-208 101-126 (365)
77 1mqi_A Glutamate receptor 2; G 80.3 0.75 2.6E-05 42.3 2.4 64 135-208 70-136 (263)
78 2i49_A Bicarbonate transporter 78.9 3.7 0.00013 42.0 7.4 129 127-296 67-223 (429)
79 1sw5_A Osmoprotection protein 77.8 2.2 7.7E-05 40.6 5.0 74 126-203 34-135 (275)
80 4ef1_A Pheromone COB1/lipoprot 77.3 2.6 9E-05 40.4 5.2 94 126-229 31-128 (246)
81 3tmg_A Glycine betaine, L-prol 73.4 3.2 0.00011 39.9 4.8 112 97-216 16-135 (280)
82 4ib2_A Putative lipoprotein; p 71.9 3.4 0.00012 39.7 4.5 94 126-229 38-135 (252)
83 2vpn_A Periplasmic substrate b 68.5 5 0.00017 39.0 5.0 32 125-156 31-65 (316)
84 2hzl_A Trap-T family sorbitol/ 68.0 4.8 0.00017 39.9 4.8 32 126-157 66-100 (365)
85 2pfz_A Putative exported prote 67.6 4.5 0.00015 39.1 4.4 76 125-207 33-144 (301)
86 2pfy_A Putative exported prote 65.4 6 0.0002 38.1 4.8 75 126-207 35-145 (301)
87 2v3u_A Glutamate receptor delt 64.3 1.8 6E-05 39.5 0.7 64 133-204 64-127 (265)
88 3fxq_A LYSR type regulator of 63.2 45 0.0015 30.8 10.4 106 95-211 90-199 (305)
89 3tqw_A Methionine-binding prot 63.0 7.7 0.00026 37.0 4.9 94 126-229 31-128 (240)
90 2h98_A HTH-type transcriptiona 61.0 79 0.0027 29.6 11.9 100 95-208 89-196 (313)
91 3jv9_A OXYR, transcriptional r 60.4 73 0.0025 26.9 10.7 100 96-209 3-109 (219)
92 2xwv_A Sialic acid-binding per 59.3 8.1 0.00028 37.6 4.5 31 126-156 36-69 (312)
93 2i6e_A Hypothetical protein; N 58.4 9 0.00031 37.1 4.6 87 132-227 43-129 (301)
94 1yae_A Glutamate receptor, ion 58.3 4.1 0.00014 38.7 2.2 20 133-152 77-96 (312)
95 2hpg_A ABC transporter, peripl 58.2 5.7 0.0002 39.0 3.2 22 135-156 54-75 (327)
96 3ho7_A OXYR; beta-alpha-barrel 58.0 43 0.0015 28.9 8.8 101 95-208 9-115 (232)
97 3i6v_A Periplasmic His/Glu/Gln 57.8 8.4 0.00029 34.5 4.1 114 127-299 45-159 (232)
98 3k2d_A ABC-type metal ION tran 56.6 7.3 0.00025 37.1 3.5 94 126-229 34-131 (237)
99 2zzv_A ABC transporter, solute 54.7 2.1 7.3E-05 42.5 -0.6 22 135-156 79-100 (361)
100 3gxa_A Outer membrane lipoprot 50.3 11 0.00037 36.7 3.6 94 126-229 51-148 (275)
101 2rin_A Putative glycine betain 49.5 7.3 0.00025 37.6 2.3 81 127-217 36-131 (298)
102 2rc8_A Glutamate [NMDA] recept 49.4 5.7 0.0002 37.5 1.5 65 132-206 101-175 (294)
103 3oxn_A Putative transcriptiona 47.8 1.1E+02 0.0037 26.7 9.9 101 95-209 17-123 (241)
104 2a5s_A N-methyl-D-aspartate re 45.6 8.9 0.00031 35.9 2.2 59 133-201 91-152 (284)
105 4ab5_A Transcriptional regulat 44.5 1.1E+02 0.0037 25.9 9.1 100 96-209 7-113 (222)
106 1al3_A Cys regulon transcripti 43.8 77 0.0026 29.6 8.6 118 95-226 91-215 (324)
107 1i6a_A OXYR, hydrogen peroxide 41.9 1.6E+02 0.0056 25.1 10.2 98 96-206 4-107 (219)
108 3up9_A Putative uncharacterize 41.8 16 0.00055 34.8 3.3 94 126-229 35-132 (245)
109 3del_B Arginine binding protei 41.0 26 0.00087 31.0 4.4 33 126-158 137-169 (242)
110 1twy_A ABC transporter, peripl 40.2 1.1E+02 0.0038 27.3 8.9 58 96-155 27-84 (290)
111 1pb7_A N-methyl-D-aspartate re 38.0 14 0.00048 34.8 2.3 80 112-202 67-167 (292)
112 1atg_A MODA, periplasmic molyb 37.5 64 0.0022 27.8 6.5 74 127-210 28-113 (231)
113 2h9b_A HTH-type transcriptiona 36.9 2.5E+02 0.0085 25.7 11.3 98 98-208 91-196 (312)
114 4dz1_A DALS D-alanine transpor 36.1 18 0.00063 32.8 2.7 58 99-158 138-195 (259)
115 2y7p_A LYSR-type regulatory pr 35.1 47 0.0016 29.0 5.2 96 96-205 7-108 (218)
116 3qax_A Probable ABC transporte 34.3 30 0.001 30.9 3.8 34 126-159 158-191 (268)
117 1ixc_A CBNR, LYSR-type regulat 33.8 2.6E+02 0.0089 25.0 12.2 101 95-208 89-195 (294)
118 4f3p_A Glutamine-binding perip 32.2 29 0.00099 31.0 3.3 52 99-158 131-182 (249)
119 3ir1_A Outer membrane lipoprot 31.4 38 0.0013 32.3 4.0 93 126-229 29-126 (245)
120 1r9l_A Glycine betaine-binding 31.2 16 0.00054 35.4 1.4 63 134-201 44-116 (309)
121 2ql3_A Probable transcriptiona 30.8 1.1E+02 0.0038 25.8 6.8 72 126-208 32-110 (209)
122 3fzv_A Probable transcriptiona 28.3 2E+02 0.0069 25.9 8.6 118 95-226 93-216 (306)
123 2fyi_A HTH-type transcriptiona 28.0 2.9E+02 0.0098 23.7 9.3 103 95-209 12-120 (228)
124 3l6g_A Betaine ABC transporter 27.6 1E+02 0.0036 28.7 6.5 84 127-217 31-119 (256)
125 2esn_A Probable transcriptiona 26.3 2.6E+02 0.0089 25.3 9.0 102 95-209 99-208 (310)
126 4h5g_A Amino acid ABC superfam 24.7 49 0.0017 29.6 3.5 50 99-156 124-173 (243)
127 3mpk_A Virulence sensor protei 23.9 51 0.0017 29.9 3.4 52 98-157 139-190 (267)
128 2y7i_A STM4351; arginine-bindi 23.6 60 0.0021 28.0 3.7 52 99-158 113-164 (229)
129 2hxr_A HTH-type transcriptiona 23.3 3.5E+02 0.012 23.1 9.0 99 96-209 29-135 (238)
130 3k4u_A Binding component of AB 22.2 62 0.0021 28.6 3.6 52 98-157 115-166 (245)
131 3kzg_A Arginine 3RD transport 21.5 68 0.0023 28.1 3.7 52 99-158 111-162 (237)
132 3kbr_A Cyclohexadienyl dehydra 21.5 56 0.0019 28.6 3.1 53 98-158 125-177 (239)
133 3mn5_S Protein spire, actin, a 20.4 56 0.0019 21.7 2.0 25 122-147 4-28 (38)
No 1
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=100.00 E-value=2.8e-99 Score=821.97 Aligned_cols=390 Identities=25% Similarity=0.418 Sum_probs=342.0
Q ss_pred CCCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-cC--------CCCCccccccceeeecccccc-cCCC
Q psy11925 3 LLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-LG--------ESSGNDWLINVLGIDSNSTAV-DNKK 72 (458)
Q Consensus 3 ~~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~g--------~~sS~~~~~k~LlF~Dst~~v-~~~~ 72 (458)
-++.+++||||++|||+||+|++.. ..+.||++|.++|+ || .++|+. ++||||+|+|..+ ..+.
T Consensus 240 pv~~~~~C~la~~P~~aVv~r~~~~----~~~~i~~~L~~~q~~fg~~~~~~f~lF~s~~--gkdLlF~Dst~~L~~ip~ 313 (687)
T 3mc2_A 240 PVEEYEQCYLARVPSHVVVARSVDG----KEDSIQELLRVAQEHFGKDKSSPFQLFGSPH--GEDLLFTDAAHGLLRVPR 313 (687)
T ss_dssp ETTCGGGSCSEEEECCEEEEESSSS----CHHHHHHHHHHHHHHSSSSSSSSCCSSCCSS--SSSCSSCTTCCEEEECCT
T ss_pred CCCCCCCCceecccCceEEEccCcc----hHHHHHHHHHHHHHHhccCCCccceeecCCC--CceeeecccccccccCCC
Confidence 4677899999999999999999642 35779999999985 44 344443 4999999999964 4555
Q ss_pred CCChhhhhccccchhhhccCCC---CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCcc
Q psy11925 73 TLHPTQYLQKANYEDVIGRVVK---PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAAD 149 (458)
Q Consensus 73 ~~~~~~YLg~a~Y~~ai~~~~~---p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD 149 (458)
.++++.||| ++|+++|++++. |.++|||||+|+.|++||++|+.+ ++|.|+|++++|+++||++|++|+||
T Consensus 314 ~~~~~~yLg-~~Y~~~i~~l~~~~~~~~~vrWCv~s~~E~~KC~~~~~~-----~~p~~~Cv~~~s~~dCi~~I~~g~AD 387 (687)
T 3mc2_A 314 KIDISLYLG-YEFLSAFRNLKRGLEDSQRVKWCAVGQQERTKCDQWSAV-----SGGALACATEETPEDCIAATMKGEAD 387 (687)
T ss_dssp TCCHHHHHH-HHHHHHHHHHCC----CCCEEEEEESSHHHHHHHHHHHH-----TTTSEEEEEESSHHHHHHHHHHTSSC
T ss_pred CCCHHHhhC-HHHHHHHHhccccCCCCCceEEccCCHHHHHHHHHHHhh-----cCCceEEEeCCCHHHHHHHHhCCCCC
Confidence 689999999 799999997665 457899999999999999999874 47899999999999999999999999
Q ss_pred EEEeCCcceEEeccCCCceEEEEEeecCC--------------cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCc
Q psy11925 150 VITLDATEAVLGRKNLNLRPILKEKYGNE--------------KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTG 214 (458)
Q Consensus 150 ~~~ld~~~~y~A~~~~~L~pil~E~y~~~--------------~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taG 214 (458)
++++|++++|+|++ |+|+|||+|.|+.. ... |+||||||++...+|++||||||||||++++||
T Consensus 388 a~tldgg~vy~Ag~-~~L~Pv~~E~y~~~~~~~~~~~~c~~~~~~~YyaVAVVkks~~~~~~~~LrGkkSCHtg~g~tAG 466 (687)
T 3mc2_A 388 AMSLDGGFAYVAGH-CGLVPVLAENYLSTHSSGRLGSKCVNAPLEGYYVVAVVKKSDVGITWKSLQGKKSCHTAVGTSEG 466 (687)
T ss_dssp BEEECHHHHHHHHH-TTCEEEEECCBCCCSCSSCCSTTSTTCCCCCEEEEEEEESSCSCCCTTCCTTSCEEESCTTCCCC
T ss_pred EEEECchHheehhh-cCcEEEeeecccccccccccccccccCCCceEEEEEEEecCCCCCCHhHcCCCCCCCCCCCCccc
Confidence 99999999999998 99999999999741 223 999999997666799999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCC----CCC---------Chh-hhhh
Q psy11925 215 WVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKA----TRV---------TYT-PLQC 280 (458)
Q Consensus 215 w~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~----~~C---------Gy~-A~rC 280 (458)
|++||+.|+++ ..+| ++++||+ +||+||++. +++||+||.|. ++| ||+ ||||
T Consensus 467 WniP~g~L~~~----~~~c----~~~~FFs-~sC~PGa~~-----~~~LC~lC~g~~~~~~kC~~~~~e~Y~Gy~GAfrC 532 (687)
T 3mc2_A 467 WNVPMGLIYDQ----TGSC----KFDAFFS-RSCAPGSDP-----DSPLCALCVGGNNPAHMCAANNAEGYHGSSGALRC 532 (687)
T ss_dssp CCTHHHHHHTT----SCCS----CHHHHSS-SEECTTSCT-----TSTTBSSCCCCSSTTCTTCSSSSSTTCHHHHHHHH
T ss_pred hhhhHhhhhcC----CCCC----CHHHhcc-ccccCCCCC-----CcchHHhcCCCCCCCCcCCCCCCCcCcCCchhHHh
Confidence 99999999876 2467 7899998 999999965 57999999994 678 899 9999
Q ss_pred cccCCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEE
Q psy11925 281 LKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVT 360 (458)
Q Consensus 281 L~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~ 360 (458)
|+|| ||||||||+||.+| ++|+ ++++||++++++||| ||||||+|+||++|++|||+++|+||||+
T Consensus 533 L~eg-GDVAFVkh~tV~en-------~~g~----~~~~wa~~l~~~dye--LLC~dgtr~pv~~~~~C~La~vP~haVv~ 598 (687)
T 3mc2_A 533 LVEK-GDVAFMKHPTVLQN-------TDGK----NPEPWAKGLKHEDFE--LLCLDGTRKPVTEAQSCHLARVPNRAVFS 598 (687)
T ss_dssp HHHT-CSEEEECTTCSTTT-------STTS----CCSGGGSSCCTTTEE--EECSSSCEEETTCTTTSCSEEECCCEEEE
T ss_pred hccC-CeEEEEeCCcHHhh-------cCCC----CchhhhhccCccceE--EECCCCCcCCCCCCCcceeEeccCCeEEE
Confidence 9999 99999999999998 8998 899999999999999 99999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhcCC---CccccccccCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhhhhhH
Q psy11925 361 SNSKSNVEIDTIRHAILSAADLFSKK---PEIFKLFGSFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNMLSKVH 434 (458)
Q Consensus 361 r~~~~~~~~~~i~~~l~~~~~~fg~~---~~~F~lF~s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~~~~~ 434 (458)
|+++. +.|+++|+++|++||++ .+.|+||+| ++|||||||+|++|++|| +.+|+.|. +|...|.
T Consensus 599 r~~~~----~~i~~~L~~~q~~fg~~~~~~~~F~lF~S--~~kdLLFkDst~~L~~~~~~~~~~~~LG~~y~~a~~---- 668 (687)
T 3mc2_A 599 RKDKA----DFVRRILFNQQELFGRNGFEYMMFQMFES--SAKDLLFSDDTECLSNLQDKTTYKTYLGPQYLTLMD---- 668 (687)
T ss_dssp CSSSH----HHHHHHHHHHHHHHSTTCCSSSSCCSSCC--SSSCSSSCTTBCCCEECTTCCSHHHHHHHHHHHHTT----
T ss_pred CCCcH----HHHHHHHHHHHHHhCcCCCCCCCceeccC--CCCCcccccccccceeCCCCCCHHHHhhHHHHHHHH----
Confidence 99853 46999999999999985 347999999 369999999999999998 67999996 7766654
Q ss_pred HHHHhhcccCccee
Q psy11925 435 ARYLFGLKSFNFYT 448 (458)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (458)
.+|.|..-.
T Consensus 669 -----~l~~c~~~~ 677 (687)
T 3mc2_A 669 -----NFRQCLSSE 677 (687)
T ss_dssp -----SSGGGCCCH
T ss_pred -----HhhhcCchh
Confidence 566665443
No 2
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=100.00 E-value=6.4e-98 Score=814.26 Aligned_cols=392 Identities=29% Similarity=0.458 Sum_probs=342.7
Q ss_pred CCCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-cC--------CCCCccccccceeeecccccc-cCCC
Q psy11925 3 LLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-LG--------ESSGNDWLINVLGIDSNSTAV-DNKK 72 (458)
Q Consensus 3 ~~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~g--------~~sS~~~~~k~LlF~Dst~~v-~~~~ 72 (458)
-++.+++||||++||||||+|++. ...+.||++|.++|+ || .++|+. ++||||+|+|+.+ ..+.
T Consensus 253 pv~~~~~C~la~vP~~aVv~r~~~----~~~~~i~~~L~~~q~~fg~~~~~~F~lF~s~~--~kdLlF~Dst~~L~~i~~ 326 (698)
T 3v83_A 253 PVDEYKDCHLAQVPSHTVVARSMG----GKEDLIWELLNQAQEHFGKDKSKEFQLFSSPH--GKDLLFKDSAHGFLKVPP 326 (698)
T ss_dssp CGGGGGGSCSEEEECCEEEEETTS----SCHHHHHHHHHHHHHHHSTTCCCSCCTTCCTT--CSSSSSCTTCCEEEECCT
T ss_pred CCCCCCCCeeeeccCceEEEcCCc----chHHHHHHHHHHHHHHhCcCCCCcceeecCCC--CCceeeccCccccccCCC
Confidence 456778999999999999999964 235779999999985 44 344443 5999999999964 4555
Q ss_pred CCChhhhhccccchhhhccCCC---------CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHH
Q psy11925 73 TLHPTQYLQKANYEDVIGRVVK---------PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLI 143 (458)
Q Consensus 73 ~~~~~~YLg~a~Y~~ai~~~~~---------p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I 143 (458)
.++++.||| ++|+++|++++. |.++|||||+|+.|++||++|+.+ ++|.|+|++++|+++||++|
T Consensus 327 ~~~~~~yLg-~~Y~~~i~~l~~~~~~~~~~~~~~~vrwC~~s~~E~~KC~~~~~~-----~~~~i~Cv~a~s~~~Ci~~I 400 (698)
T 3v83_A 327 RMDAKMYLG-YEYVTAIRNLREGTCPEAPTDECKPVKWCALSHHERLKCDEWSVN-----SVGKIECVSAETTEDCIAKI 400 (698)
T ss_dssp TCCHHHHHC-HHHHHHHHHHHTTCCCCCHHHHCCCEEEEEEHHHHHHHHHHHHHH-----TTTSEEEEEESSHHHHHHHH
T ss_pred CCCHHHhcc-HHHHHHHHhhhccCCccccCCCCCceEEeeCCHHHHHHHHHHHHh-----cCCCeEEEeCCCHHHHHHHH
Confidence 689999999 799999997553 236799999999999999999874 47899999999999999999
Q ss_pred HcCCccEEEeCCcceEEeccCCCceEEEEEeecCC-------cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCch
Q psy11925 144 ADGAADVITLDATEAVLGRKNLNLRPILKEKYGNE-------KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGW 215 (458)
Q Consensus 144 ~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~-------~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw 215 (458)
++|+||++++|++++|+|++ |+|+|||+|.|+.+ ... |+||||||+++..+|+||||||+||||+++||||
T Consensus 401 ~~g~AD~~~ld~~~vy~Ag~-~~L~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkks~s~~t~~dLrGKksCHtg~~~tAGw 479 (698)
T 3v83_A 401 MNGEADAMSLDGGFVYIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGW 479 (698)
T ss_dssp HHTSCCEEEECHHHHHHHHH-TTCEEEEEEECSCCTTGGGCCCCCEEEEEEEETTSCCCCSSTTTTCEEEESCTTCTTTT
T ss_pred HcCCCCEEEECcHHHhhhhh-cCceEEEEEeeccccccccCCCCceEEEEEEecCCCCCCHHHhCCCCccCCCCCCcccc
Confidence 99999999999999999998 99999999999765 224 9999999965556899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCC--CCC---------Chh-hhhhccc
Q psy11925 216 VAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKA--TRV---------TYT-PLQCLKS 283 (458)
Q Consensus 216 ~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~--~~C---------Gy~-A~rCL~e 283 (458)
++|++.|+++ ..+| ++++||+ +||+||++. +++||+||.|. ++| ||+ |||||+|
T Consensus 480 ~iP~g~L~~~----~~~c----~~~~FFs-~sC~PG~~~-----~~~LC~lC~g~~~~kC~~~~~e~Y~Gy~GAfrCL~e 545 (698)
T 3v83_A 480 NIPMGLLYNK----INHC----RFDEFFS-EGCAPGSKK-----DSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVE 545 (698)
T ss_dssp HHHHHHHHHH----HCSS----CHHHHSS-EEECTTSCT-----TSGGGTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHH
T ss_pred chhheehhcC----CCCC----CHHHhhh-hhccCCCCC-----CcchHHhcCCCCCCcCCCCCcCcCcCCcchHhhhcc
Confidence 9999999986 2357 6799998 999999965 57999999995 788 899 9999999
Q ss_pred CCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCC
Q psy11925 284 GDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNS 363 (458)
Q Consensus 284 g~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~ 363 (458)
| ||||||||+||.+| ++|+ ++++||++++++||| ||||||+|+||++|++|||+++|+|+||+|++
T Consensus 546 g-GDVAFvkh~tv~~n-------~~g~----~~~~wa~~~~~~dye--LLC~dG~r~~v~~~~~C~La~vP~~aVv~r~~ 611 (698)
T 3v83_A 546 K-GDVAFVKHQTVPQN-------TGGK----NPDPWAKNLNEKDYE--LLCLDGTRKPVEEYANCHLARAPNHAVVTRKD 611 (698)
T ss_dssp T-CSEEEEETTHHHHT-------STTS----SCSTTTTTCCGGGEE--ECCTTSCCCBGGGGGGSCSEEECCCEEEECGG
T ss_pred C-CeEEEEeCCcHHhh-------cCCC----CchhhhhccCcccEE--EECCCCCcCCccCCCccceeeccCceEEecCc
Confidence 9 99999999999998 9999 999999999999999 99999999999999999999999999999996
Q ss_pred CChhHHHHHHHHHHHHHHHhcCC----CccccccccCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhhhhhHHH
Q psy11925 364 KSNVEIDTIRHAILSAADLFSKK----PEIFKLFGSFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNMLSKVHAR 436 (458)
Q Consensus 364 ~~~~~~~~i~~~l~~~~~~fg~~----~~~F~lF~s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~~~~~~~ 436 (458)
+. ..|+++|+++|++||++ ++.|+||+| +.|||||||+|++|++|| +.+|+.|. +|...|.
T Consensus 612 ~~----~~v~~~L~~~q~~fg~~~~~~~~~F~lF~s--~~kdLlFkDst~~L~~~~~~~~~~~~LG~~y~~~~~------ 679 (698)
T 3v83_A 612 KE----ACVHKILRQQQHLFGSNVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKAVG------ 679 (698)
T ss_dssp GH----HHHHHHHHHHHHHHSTTCCCSSSSCCTTCC--TTSCCSSCTTCCEEEECTTCCSHHHHHCHHHHHHHH------
T ss_pred hH----HHHHHHHHHHHHHhCCCCcccCCCceeccC--CCCCcccccccccceeCCCCCCHHHHhhHHHHHHHH------
Confidence 43 46999999999999974 357999999 469999999999999998 67999995 7766654
Q ss_pred HHhhcccCcceeec
Q psy11925 437 YLFGLKSFNFYTLL 450 (458)
Q Consensus 437 ~~~~~~~~~~~~~~ 450 (458)
.++.|..-.|+
T Consensus 680 ---~l~~c~~~~~~ 690 (698)
T 3v83_A 680 ---NLRKCSTSSLL 690 (698)
T ss_dssp ---TTSTTCCCHHH
T ss_pred ---HhhcCCCchhh
Confidence 67777654443
No 3
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=100.00 E-value=1e-93 Score=781.50 Aligned_cols=390 Identities=28% Similarity=0.472 Sum_probs=342.6
Q ss_pred CCCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-cC--------CCC-----Cccccccceeeecccccc
Q psy11925 3 LLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-LG--------ESS-----GNDWLINVLGIDSNSTAV 68 (458)
Q Consensus 3 ~~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~g--------~~s-----S~~~~~k~LlF~Dst~~v 68 (458)
-++.+++||||++|||+||+|++.. .++|+++|.++++ || +++ |+.| +||||+|+|..|
T Consensus 235 pv~~~~~C~la~vP~~aVv~r~~~~-----~~~i~~~L~~~~~~fg~~~~~~F~lF~s~~~~s~~~--kdLlFkDst~~L 307 (686)
T 2d3i_A 235 PVDNYKTCNWARVAAHAVVARDDNK-----VEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVL--KDLLFKDSAIML 307 (686)
T ss_dssp CGGGGGGSCSEEEECCEEEECSSTT-----HHHHHHHHHHHHHHHSTTCCSSCCSSCCCSSSCGGG--SSCSSCTTCCEE
T ss_pred CCccCccceecccCCceEEEcCCCC-----HHHHHHHHHHHHHHhccCCCccccccCCccccCCcC--CccceecCchhh
Confidence 3566789999999999999999754 2468899998885 33 345 5555 899999999974
Q ss_pred -cCCCCCChhhhhccccchhhhccCCC-------CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHH
Q psy11925 69 -DNKKTLHPTQYLQKANYEDVIGRVVK-------PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCL 140 (458)
Q Consensus 69 -~~~~~~~~~~YLg~a~Y~~ai~~~~~-------p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci 140 (458)
..++.+++++||| .+|+++|++++. +.++|||||+|+.|++||++|+.++ +|+|+|++++|+++||
T Consensus 308 ~~~~~~~~~~~yLg-~~Y~~~i~~l~~~~~~~~~~~~~vrwCv~s~~E~~KC~~~~~~~-----~~~v~Cv~~~s~~~Ci 381 (686)
T 2d3i_A 308 KRVPSLMDSQLYLG-FEYYSAIQSMRKDQLTPSPRENRIQWCAVGKDEKSKCDRWSVVS-----NGDVECTVVDETKDCI 381 (686)
T ss_dssp EECCTTCCHHHHHC-HHHHHHHHHTTSCC------CCSEEEEEEHHHHHHHHHHHHHHT-----TTSEEEEEESSHHHHH
T ss_pred hcCCCCCCHHHHhC-HHHHHHHHhhhccccCCCCCCcceEEeecCchHHHHHHHHHHhc-----CCCeEEEeCCCHHHHH
Confidence 4555689999999 699999997654 2468999999999999999998763 5799999999999999
Q ss_pred HHHHcCCccEEEeCCcceEEeccCCCceEEEEEeec-CC-------cc-e-EEEEEEecCCCccChhhhcCCceeeCCCC
Q psy11925 141 KLIADGAADVITLDATEAVLGRKNLNLRPILKEKYG-NE-------KD-L-LAVAVVNKNSKVKSLEELKGLKSCHTAYM 210 (458)
Q Consensus 141 ~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~-~~-------~~-~-~aVAVVkk~s~~~~l~dLkGkksChtg~~ 210 (458)
++|++|+||++++|++++|+|++ ++|+|||+|.|+ .. .. . |+|||||+++.+ +|+||||||+||||++
T Consensus 382 ~~I~~g~AD~~~ld~~~~y~A~~-~gL~Pv~~E~y~~~~~c~~~~g~~~~Y~aVAVVkk~s~~-tl~dLkGkksChtg~g 459 (686)
T 2d3i_A 382 IKIMKGEADAVALDGGLVYTAGV-CGLVPVMAERYDDESQCSKTDERPASYFAVAVARKDSNV-NWNNLKGKKSCHTAVG 459 (686)
T ss_dssp HHHHHTSCCBEEECHHHHHHHHH-TTCEEEEEEECSCGGGC------CCCEEEEEEEESSSCC-CTTSCTTSEEEESCTT
T ss_pred HHHHcCCCCEEEECchHHhhhhc-CCceeeEEEeecccccccccCCCCceEEEEEEEecCCCC-CHHHhcCCCcccCCCC
Confidence 99999999999999999999988 999999999997 22 22 4 999999999885 8999999999999999
Q ss_pred CCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCC-----CCC---------Chh
Q psy11925 211 RTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKA-----TRV---------TYT 276 (458)
Q Consensus 211 ~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~-----~~C---------Gy~ 276 (458)
+||||++|++.|++++ .+| .+++||+ +||+||+++ +++||+||+|. ++| ||+
T Consensus 460 staGw~iP~~~L~~~~----~~c----~~~~fFs-~sC~pg~~~-----~~~lC~lC~g~~~~~~~~C~~~~~e~Y~Gy~ 525 (686)
T 2d3i_A 460 RTAGWVIPMGLIHNRT----GTC----NFDEYFS-EGCAPGSPP-----NSRLCQLCQGSGGIPPEKCVASSHEKYFGYT 525 (686)
T ss_dssp CTTTTHHHHHHHHHHH----CCC----CGGGTSS-EEECTTSCT-----TSGGGTTCCCCSSSSCCTTCSSTTSTTCHHH
T ss_pred CCcchhhHHHHHhhCC----Ccc----cHHHhCc-ccccCCCCC-----chhhhhhccCCCccccCccCCCCcccccCcc
Confidence 9999999999999887 367 5899998 999999965 57999999994 579 899
Q ss_pred -hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCccccccccCC
Q psy11925 277 -PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPP 355 (458)
Q Consensus 277 -A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~ 355 (458)
|||||+|| ||||||||+||.+| +||+ |+++||++++++||| ||||||+|+||++|+.|||+++|+
T Consensus 526 GAfrCL~eg-GDVAFvkh~tv~~~-------~~g~----~~~~wa~~l~~~d~e--LLCpdg~r~~v~~~~~C~la~~p~ 591 (686)
T 2d3i_A 526 GALRCLVEK-GDVAFIQHSTVEEN-------TGGK----NKADWAKNLQMDDFE--LLCTDGRRANVMDYRECNLAEVPT 591 (686)
T ss_dssp HHHHHHHHT-CSEEEEETTHHHHT-------STTC----CCSTTTTTCCGGGEE--EECTTSCEEEGGGGGGSCSEEECC
T ss_pred hhHHhhccC-CcEEEEechhHHhh-------ccCC----CcchhhccCCccceE--EECCCCCcCCcccCCcccccccCC
Confidence 99999999 99999999999999 9998 999999999999999 999999999999999999999999
Q ss_pred ceEEEcCCCChhHHHHHHHHHHHHHHHhcCCC---ccccccccCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhh
Q psy11925 356 HMVVTSNSKSNVEIDTIRHAILSAADLFSKKP---EIFKLFGSFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNM 429 (458)
Q Consensus 356 ~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~~---~~F~lF~s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~ 429 (458)
|+||+|+++. ++|+++|+++|++||+++ +.|+||+| +.+||||+|+|++|+.+| +.+|+.|. +|...+
T Consensus 592 ~avv~r~~~~----~~v~~~l~~~q~~fg~~~~~~~~F~lf~s--~~~nlLF~D~t~~L~~~~~~~~~~~~lg~~y~~~~ 665 (686)
T 2d3i_A 592 HAVVVRPEKA----NKIRDLLERQEKRFGVNGSEKSKFMMFES--QNKDLLFKDLTKCLFKVREGTTYKEFLGDKFYTVI 665 (686)
T ss_dssp CEEEECGGGH----HHHHHHHHHHHHHHSTTCTTTTTCCTTCC--SSSCCSSCTTCCEEEECCTTCCHHHHHCHHHHHHH
T ss_pred CeEEecccHH----HHHHHHHHHHHHHhCcCCCCCCceEecCC--CCCCCCeecCccccccCCCCCcHHHHhHHHHHHHH
Confidence 9999999743 689999999999999884 47999999 479999999999999998 67999997 665444
Q ss_pred hhhhHHHHHhhcccCcceeec
Q psy11925 430 LSKVHARYLFGLKSFNFYTLL 450 (458)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~ 450 (458)
.++|.|++-.|+
T Consensus 666 ---------~~~~~c~~~~~~ 677 (686)
T 2d3i_A 666 ---------SSLKTCNPSDIL 677 (686)
T ss_dssp ---------HHHTTTCCCHHH
T ss_pred ---------HHHhccCcHHHh
Confidence 467888665443
No 4
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=100.00 E-value=8.3e-93 Score=776.11 Aligned_cols=394 Identities=27% Similarity=0.457 Sum_probs=348.9
Q ss_pred CCCCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-cC--------CCCCccccccceeeecccccc-cCC
Q psy11925 2 KLLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-LG--------ESSGNDWLINVLGIDSNSTAV-DNK 71 (458)
Q Consensus 2 ~~~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~g--------~~sS~~~~~k~LlF~Dst~~v-~~~ 71 (458)
+.++.+++||||++|||+||+|++.. ..++|++.|.++++ || .++|+.|. +||||+|+|..+ ..+
T Consensus 237 ~pv~~~~~C~la~vP~~aVv~r~~~~----~~~~i~~~L~~~~~~fg~~~~~~F~lF~s~~~~-~dLlF~D~t~~L~~~~ 311 (689)
T 1blf_A 237 APVDAFKECHLAQVPSHAVVARSVDG----KEDLIWKLLSKAQEKFGKNKSRSFQLFGSPPGQ-RDLLFKDSALGFLRIP 311 (689)
T ss_dssp BCTTCTTTSCSEEEECCEEEEESSSC----CHHHHHHHHHHHHHHSSTTCCSSCCTTCCCTTS-CCCSSCTTCCEEEECC
T ss_pred cCcCcCccceecCcCCceEEEcCCcc----HHHHHHHHHHHHHHHhccCCCcccccccCCccC-CCccccccchhhccCC
Confidence 45677899999999999999999764 24678999999985 33 44677765 999999999974 455
Q ss_pred CCCChhhhhccccchhhhccCCC-------CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHH
Q psy11925 72 KTLHPTQYLQKANYEDVIGRVVK-------PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIA 144 (458)
Q Consensus 72 ~~~~~~~YLg~a~Y~~ai~~~~~-------p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~ 144 (458)
+.+++++||| .+|+++|++++. +.++|||||+|+.|++||++|+.++ +|+|+|++++|+++||++|+
T Consensus 312 ~~~~~~~yLg-~~Y~~~i~~l~~~~~~~~~~~~~vrwCv~s~~E~~KC~~~~~~~-----~~~i~Cv~~~s~~~Ci~~I~ 385 (689)
T 1blf_A 312 SKVDSALYLG-SRYLTTLKNLRETAEEVKARYTRVVWCAVGPEEQKKCQQWSQQS-----GQNVTCATASTTDDCIVLVL 385 (689)
T ss_dssp TTCCHHHHHH-HHHHHHHHHHHSCHHHHHHHHHSEEEEEESHHHHHHHHHHHHHT-----TSSEEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHhh-HHHHHHHHhhcccccCCCCCCcceEEeecCcHHHHHHHHHHHhc-----CCCeEEEeCCCHHHHHHHHH
Confidence 5689999999 699999997664 2468999999999999999998763 57999999999999999999
Q ss_pred cCCccEEEeCCcceEEeccCCCceEEEEEeecCC-----c-----c-e-EEEEEEecCCCccChhhhcCCceeeCCCCCC
Q psy11925 145 DGAADVITLDATEAVLGRKNLNLRPILKEKYGNE-----K-----D-L-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRT 212 (458)
Q Consensus 145 ~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~-----~-----~-~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~t 212 (458)
+|+||++++|++++|+|++ +||+|||+|.|+.. + . . |+||||||++++.+|+||||||+||||++++
T Consensus 386 ~g~AD~~~ld~~~~y~A~~-~gL~Pv~~E~y~~~~~~~~~c~~~~~~~Y~aVAVVkk~s~~~t~~dLkGkksChtg~~~t 464 (689)
T 1blf_A 386 KGEADALNLDGGYIYTAGK-CGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRT 464 (689)
T ss_dssp HTSCCEEEECHHHHHHHHT-TTCEEEEEEECCCSSCSSSCTTTSCCCCEEEEEEEETTSTTCCSGGGTTSEEEESCTTCT
T ss_pred cCCCCEEEeCcHHHHHHhh-cCCEEEEEeeecCccccccccccCCccceEEEEEEEcCCCcCCHHHHcCCCcccCCCCCC
Confidence 9999999999999999998 99999999999764 1 2 3 9999999999889999999999999999999
Q ss_pred CchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCC----CCC---------Chh-hh
Q psy11925 213 TGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKA----TRV---------TYT-PL 278 (458)
Q Consensus 213 aGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~----~~C---------Gy~-A~ 278 (458)
|||++|++.|+++| .+| .+++||+ +||+||+++ +++||+||+|. ++| ||+ ||
T Consensus 465 aGw~iP~~~L~~~~----~~c----~~~~fFs-~sC~PG~~~-----~~~lC~lC~g~~~~~~~C~~~~~e~Y~Gy~GA~ 530 (689)
T 1blf_A 465 AGWNIPMGLIVNQT----GSC----AFDEFFS-QSCAPGADP-----KSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAF 530 (689)
T ss_dssp TTTHHHHHHHHHHH----TCS----CGGGTSS-EEECTTSCT-----TSTTSTTCCCSSSCCSTTCSSTTSTTCHHHHHH
T ss_pred cchhhhHHHHhhCC----CCC----cHHHhcC-CcccCCCCC-----chhHHHhhcCCCccccccCCCCcccccCchHHH
Confidence 99999999999987 367 5999998 999999975 68999999984 578 899 99
Q ss_pred hhcccCCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceE
Q psy11925 279 QCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMV 358 (458)
Q Consensus 279 rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aV 358 (458)
|||+||+||||||+|+||.+| ++|+ |+++||+++.++||+ ||||||+|+||++|++|||+++|+|+|
T Consensus 531 rCL~eg~gDVAFv~~~tv~~~-------~~g~----~~~~wa~~~~~~d~~--LLC~dg~r~~v~~~~~C~l~~vP~~~V 597 (689)
T 1blf_A 531 RCLAEDVGDVAFVKNDTVWEN-------TNGE----STADWAKNLNREDFR--LLCLDGTRKPVTEAQSCHLAVAPNHAV 597 (689)
T ss_dssp HHHHTTSSSEEEEEHHHHHHT-------STTS----CCSTTTTTCCGGGEE--EECTTSCEEETTCCSSSCSEEECCCEE
T ss_pred HHHHcCCCcEEEecchhHHHh-------hccC----CchhhhhhccccceE--EECCCCCccCcccCccceeccCCCceE
Confidence 999999999999999999998 8998 999999999999999 999999999999999999999999999
Q ss_pred EEcCCCChhHHHHHHHHHHHHHHHhcCC----CccccccccCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhhh
Q psy11925 359 VTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGSFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNMLS 431 (458)
Q Consensus 359 v~r~~~~~~~~~~i~~~l~~~~~~fg~~----~~~F~lF~s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~~ 431 (458)
|+|++++ ++|+++|++++++||++ ++.|+||+| +.+||||+|+|++|+.+| +.+|+.|. +|...+
T Consensus 598 v~r~~~~----~~i~~~l~~~~~~fg~~~~~~~~~F~lf~s--~~~nllF~D~t~~L~~~~~~~~~~~~lg~~y~~~~-- 669 (689)
T 1blf_A 598 VSRSDRA----AHVKQVLLHQQALFGKNGKNCPDKFCLFKS--ETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAI-- 669 (689)
T ss_dssp EECTTTH----HHHHHHHHHHHHHHSTTCSSTTTTCCTTCS--SSSCCSSCTTCCEEEECCSSCCHHHHHCHHHHHHH--
T ss_pred EECCchH----HHHHHHHHHHHHHhCcCCCCCCCCeeccCC--CCCCCccccCccCcccCCCCCcHHHHhHHHHHHHH--
Confidence 9999854 67999999999999987 357999999 379999999999999998 67999986 665544
Q ss_pred hhHHHHHhhcccCcceee
Q psy11925 432 KVHARYLFGLKSFNFYTL 449 (458)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ 449 (458)
.++|.|..-.|
T Consensus 670 -------~~~~~c~~~~~ 680 (689)
T 1blf_A 670 -------ANLKKCSTSPL 680 (689)
T ss_dssp -------HHHTTSSCCHH
T ss_pred -------HHHhhcCchHH
Confidence 46788865444
No 5
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=100.00 E-value=3.3e-93 Score=778.10 Aligned_cols=392 Identities=27% Similarity=0.468 Sum_probs=346.6
Q ss_pred CCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-c--------CCCCCccccccceeeecccccc-cCCCC
Q psy11925 4 LQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-L--------GESSGNDWLINVLGIDSNSTAV-DNKKT 73 (458)
Q Consensus 4 ~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~--------g~~sS~~~~~k~LlF~Dst~~v-~~~~~ 73 (458)
++.+++||||++|||+||+|++.. ..+.|+++|.++++ | .+++|+.|. +||||+|+|..+ ..++.
T Consensus 239 v~~~~~C~la~vP~~aVv~r~~~~----~~~~i~~~L~~~~~~fg~~~~~~F~lF~s~~~~-kdLLFkDst~~L~~~~~~ 313 (691)
T 1cb6_A 239 VDKFKDCHLARVPSHAVVARSVNG----KEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQ-KDLLFKDSAIGFSRVPPR 313 (691)
T ss_dssp GGGTTTSCSEEEECCEEEEESSSC----CHHHHHHHHHHHHHHHSTTSCSSCCSSCCCTTC-CCSSSCTTCCEEEECCTT
T ss_pred cccCccceecccCCceEEEcCCcc----hHHHHHHHHHHHHHHhccCCCCcccccCCcccC-CCccccccchhheeCCCC
Confidence 567799999999999999999754 24668999998884 3 345677775 999999999974 45556
Q ss_pred CChhhhhccccchhhhccCCC-------CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcC
Q psy11925 74 LHPTQYLQKANYEDVIGRVVK-------PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADG 146 (458)
Q Consensus 74 ~~~~~YLg~a~Y~~ai~~~~~-------p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g 146 (458)
+++++||| .+|+++|++++. +.++|||||+|+.|++||++|+.++ +|.|+|++++|+++||++|++|
T Consensus 314 ~~~~~yLg-~~Y~~~i~~l~~~~~~~~~~~~~vrwCv~s~~E~~KC~~~~~~~-----~~~i~Cv~~~s~~~Ci~~I~~g 387 (691)
T 1cb6_A 314 IDSGLYLG-SGYFTAIQNLRKSEEEVAARRARVVWCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTEDCIALVLKG 387 (691)
T ss_dssp CCHHHHHH-HHHHHHHHHTTSCHHHHHHHHHSEEEEEESHHHHHHHHHHHHHT-----TTSEEEEEESSHHHHHHHHHHT
T ss_pred CCHHHHhh-HHHHHHHHhhcccccCCCCCCcceEEeecCcHHHHHHHHHHHhc-----CCCeEEEeCCCHHHHHHHHHcC
Confidence 89999999 699999998765 1467999999999999999998763 5799999999999999999999
Q ss_pred CccEEEeCCcceEEeccCCCceEEEEEeecC------C-c-----c-e-EEEEEEecCCCccChhhhcCCceeeCCCCCC
Q psy11925 147 AADVITLDATEAVLGRKNLNLRPILKEKYGN------E-K-----D-L-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRT 212 (458)
Q Consensus 147 ~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~------~-~-----~-~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~t 212 (458)
+||++++|++++|+|++ ++|+|||+|.|+. . . . . |+||||||++++.+|+||||||+||||++++
T Consensus 388 ~AD~~~ld~~~~y~A~~-~gL~Pv~~E~y~~~~~~~~~~~c~~~~~~~Y~aVAVVkk~s~~~t~~dLkGkksChtg~~~t 466 (691)
T 1cb6_A 388 EADAMSLDGGYVYTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCHTAVDRT 466 (691)
T ss_dssp SCCBEEECHHHHHHHHH-TTCEEEEEEEECSSSSCCCCTTGGGSCCCCEEEEEEEESSCTTCCGGGCTTSEEEESCTTCT
T ss_pred CCCEEEeCcHHHHHHhh-cCCEEEEeeeecCccccccccccccCCCcceEEEEEEEcCCCcCCHHHHCCCCcccCCCCCc
Confidence 99999999999999998 9999999999976 3 1 1 3 9999999999889999999999999999999
Q ss_pred CchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCC----CCC---------Chh-hh
Q psy11925 213 TGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKA----TRV---------TYT-PL 278 (458)
Q Consensus 213 aGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~----~~C---------Gy~-A~ 278 (458)
|||++|++.|+++| .+| .+++||+ +||+||+++ +++||+||.|. ++| ||+ ||
T Consensus 467 aGw~iP~~~L~~~~----~~c----~~~~fFs-~sC~PG~~~-----~~~lC~lC~g~~~~~~~C~~~~~e~Y~Gy~GA~ 532 (691)
T 1cb6_A 467 AGWNIPMGLLFNQT----GSC----KFDEYFS-QSCAPGSDP-----RSNLCALCIGDEQGENKCVPNSNERYYGYTGAF 532 (691)
T ss_dssp TTTHHHHHHHHHHH----CCC----CGGGTSS-EEECTTSCT-----TSGGGTTCCCSTTSCSTTCSSTTSTTCHHHHHH
T ss_pred hHHHHHHHHHHhCC----CCC----cHHHhcC-CcccCCCCC-----chhhHHhhcCCCccccccCCCCcccccCchhHH
Confidence 99999999999987 367 4999998 999999975 68999999984 578 899 99
Q ss_pred hhcccCCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceE
Q psy11925 279 QCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMV 358 (458)
Q Consensus 279 rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aV 358 (458)
|||+||+||||||+|+||.++ ++|+ |+++||+++.++||+ ||||||+|+||++|++|||+++|+|+|
T Consensus 533 rCL~eg~gDVAFvk~~tv~~~-------~~g~----~~~~wa~~~~~~d~~--LLC~dg~r~~v~~~~~C~la~vP~~aV 599 (691)
T 1cb6_A 533 RCLAENAGDVAFVKDVTVLQN-------TDGN----NNEAWAKDLKLADFA--LLCLDGKRKPVTEARSCHLAMAPNHAV 599 (691)
T ss_dssp HHHHTTSCSEEEEEHHHHHTT-------STTS----SCSHHHHTCCGGGEE--EECTTSCEEEGGGGGGSCSEEECCCEE
T ss_pred HHHHcCCCcEEEecchhHHHh-------hcCC----CchhhhhhcCccceE--EECCCCCcCCccccccccccccCCceE
Confidence 999999999999999999998 8998 999999999999999 999999999999999999999999999
Q ss_pred EEcCCCChhHHHHHHHHHHHHHHHhcCC----CccccccccCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhhh
Q psy11925 359 VTSNSKSNVEIDTIRHAILSAADLFSKK----PEIFKLFGSFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNMLS 431 (458)
Q Consensus 359 v~r~~~~~~~~~~i~~~l~~~~~~fg~~----~~~F~lF~s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~~ 431 (458)
|+|++++ ++|+++|++++++||++ ++.|+||+| +.+||||+|+|++|+.+| +.+|+.|. +|...+.
T Consensus 600 v~r~~~~----~~i~~~l~~~~~~fg~~~~~~~~~F~lF~s--~~~nllF~D~t~~L~~~~~~~~~~~~lg~~y~~~~~- 672 (691)
T 1cb6_A 600 VSRMDKV----ERLKQVLLHQQAKFGRNGSDCPDKFCLFQS--ETKNLLFNDNTECLARLHGKTTYEKYLGPQYVAGIT- 672 (691)
T ss_dssp EECGGGH----HHHHHHHHHHHHHHSTTCSSTTTTCCTTCS--SSCCCSSCTTEEEEECCTTCCSHHHHHCHHHHHHHH-
T ss_pred EECccHH----HHHHHHHHHHHHHhccCCCCCCCceeccCC--CCCCCCEecCccccccCCCCCcHHHHhHHHHHHHHH-
Confidence 9999754 68999999999999987 357999999 479999999999999998 67999986 6665554
Q ss_pred hhHHHHHhhcccCcceee
Q psy11925 432 KVHARYLFGLKSFNFYTL 449 (458)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ 449 (458)
+++.|..-.|
T Consensus 673 --------~~~~c~~~~~ 682 (691)
T 1cb6_A 673 --------NLKKCSTSPL 682 (691)
T ss_dssp --------HHHHHCCCHH
T ss_pred --------HHhcCCchHH
Confidence 5666654333
No 6
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ...
Probab=100.00 E-value=1.7e-86 Score=670.67 Aligned_cols=300 Identities=32% Similarity=0.544 Sum_probs=269.1
Q ss_pred CceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeec
Q psy11925 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYG 176 (458)
Q Consensus 97 ~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~ 176 (458)
++|||||+|+.|+.||++|+.+ .+|.|+|+.+.|+++||++|++|+||+++||++++|+|++ ++|+|||+|.|+
T Consensus 2 ~~vrWC~~s~~E~~KC~~~~~~-----~~~~i~Cv~~~s~~dCi~~I~~g~AD~~~ld~g~vy~Ag~-~~L~Pv~~E~y~ 75 (335)
T 3tod_A 2 TRVVWCAVGPEEQKKCQQWSQQ-----SGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGK-CGLVPVLAENRK 75 (335)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHH-----TTTSEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHH-TTCEEEEEEEEC
T ss_pred CceEEccCCHHHHHHHHHHHHh-----CCCCeEEEecCCHHHHHHHHHcCCCCEEEECchheEEecc-CCceeEEEEeec
Confidence 4699999999999999999874 2689999999999999999999999999999999999985 899999999997
Q ss_pred ----C-C------cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccc
Q psy11925 177 ----N-E------KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFT 244 (458)
Q Consensus 177 ----~-~------~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFs 244 (458)
. + ... |+||||||+++..+|+||||||+||||++++|||++|++.|+++. ..| ++++||+
T Consensus 76 ~~~~~~~~~~~~~~~~YyaVAVVkKs~s~~tl~dLrGKksCHtg~g~tAGW~iP~g~L~~~~----~~c----~~s~FFs 147 (335)
T 3tod_A 76 SSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQT----GSC----AFDEFFS 147 (335)
T ss_dssp CSSCCCSCGGGSCCCCEEEEEEEETTCTTCCGGGCTTCEEEESCTTCTTTTHHHHHHHHHHH----TCS----CGGGSSS
T ss_pred ccccccccccCCccceEEEEEEEEcCCCCCCHHHcCCCCccCCCCCCccchhhhhhhhhhcC----CCC----CHHHhhh
Confidence 3 1 123 999999995444589999999999999999999999999998763 357 5899998
Q ss_pred cCcccCCCCccccCCCchhhhhCCCC----CCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccch
Q psy11925 245 GGSCVPGIDEEEKDAPASLEKICPKA----TRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEI 310 (458)
Q Consensus 245 g~sC~pG~~~~~~~~~~~LC~lC~g~----~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~ 310 (458)
+||+||++. +++||+||.|. ++| ||+ |||||+||+||||||||+||.+| ++|+
T Consensus 148 -~sC~PG~~~-----~~~LC~lC~g~~~~~~kC~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tV~~~-------~~g~ 214 (335)
T 3tod_A 148 -QSCAPGADP-----KSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWEN-------TNGE 214 (335)
T ss_dssp -EEECTTSCT-----TSGGGTTCCCSTTSTTTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHHT-------STTS
T ss_pred -hhccCCCCC-----CcchhhhcCCCCCccCcCCCCCCCcCcCCCcceeeeccCCCcEEEEechhHHhh-------cCCC
Confidence 999999964 57999999995 679 899 99999999999999999999998 8898
Q ss_pred hhhccCCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCC---
Q psy11925 311 EYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKP--- 387 (458)
Q Consensus 311 ~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~~--- 387 (458)
++++|++++.++||| ||||||+|+||++|++|||+++|+|+||+|++. .+.|+++|+++|++||++.
T Consensus 215 ----~~~~wa~~~~~~dye--LLC~dG~r~pv~~~~~C~la~vP~~aVv~r~~~----~~~v~~~L~~~q~~fg~~~~~~ 284 (335)
T 3tod_A 215 ----STADWAKNLKREDFR--LLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDR----AAHVEQVLLHQQALFGKNGKNC 284 (335)
T ss_dssp ----CCSTTTTTCCGGGEE--EECTTSCEEEGGGGGGSCSEEECCCEEEECHHH----HHHHHHHHHHHHHHHSTTCTTT
T ss_pred ----CchhhhccCChhheE--EECCCCCcCCCCCCCcceEEEccCCEEEECCCc----HHHHHHHHHHHHHHhCcCCCCC
Confidence 889999999999999 999999999999999999999999999999853 3579999999999999862
Q ss_pred -ccccccccCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhhhhhHHHHHhhcccC
Q psy11925 388 -EIFKLFGSFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNMLSKVHARYLFGLKSF 444 (458)
Q Consensus 388 -~~F~lF~s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~ 444 (458)
+.|+||+|+. |||||+|+|++|+.|| +.+|+.|. +|..+| .+||.|
T Consensus 285 ~~~F~lF~s~~--kdLLFkD~t~~L~~~~~~~~~~~yLg~~y~~ai---------~~l~~c 334 (335)
T 3tod_A 285 PDKFCLFKSET--KNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAI---------ANLKKC 334 (335)
T ss_dssp TTTCCTTCSTT--SCCSSCTTEEEEECCTTCCCHHHHHCHHHHHHH---------HHHHTT
T ss_pred CCCccccCCCC--CcccccccccCcccCCCCCCHHHHhhHHHHHHH---------HHHhcC
Confidence 5799999963 9999999999999998 67999998 665544 467777
No 7
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E
Probab=100.00 E-value=2e-86 Score=671.81 Aligned_cols=304 Identities=33% Similarity=0.538 Sum_probs=272.4
Q ss_pred CceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeec
Q psy11925 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYG 176 (458)
Q Consensus 97 ~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~ 176 (458)
++|||||+|+.|+.||++|+.++ +|.|+|+++.|+++||++|++|+||+++||++++|+|++. +|+||++|.|+
T Consensus 3 ~~vrWC~~s~~E~~KC~~~~~~~-----~~~v~Cv~a~s~~~Ci~~I~~g~AD~~~ld~~~vy~Ag~~-~L~Pv~~E~y~ 76 (342)
T 3skp_A 3 KPVKWCALSHHERLKCDEWSVNS-----VGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKC-GLVPVLAENYN 76 (342)
T ss_dssp CSEEEEECSHHHHHHHHHHHHHT-----TTSEEEEECSSHHHHHHHHHHTSCCBEEECHHHHHHHHHT-TCEEEEEEECS
T ss_pred ceEEEeeCCHHHHHHHHHHHHhc-----CCCeEEEeCCCHHHHHHHHHcCCCCEEEECchheEEeccC-CcEEEEEEEee
Confidence 56999999999999999999753 5899999999999999999999999999999999999875 99999999997
Q ss_pred CCc-------ce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcc
Q psy11925 177 NEK-------DL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSC 248 (458)
Q Consensus 177 ~~~-------~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC 248 (458)
.+. .. |+||||||++++.+|+||||||+||||++++|||++|++.|+++. ..| ++++||+ +||
T Consensus 77 ~~~~~~~~~~~~YyaVAVVkK~s~~~tl~dLrGKksCHtg~g~tAGW~iP~g~L~~~~----~~c----~~s~FFs-~sC 147 (342)
T 3skp_A 77 KSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKI----NHC----RFDEFFS-EGC 147 (342)
T ss_dssp CCTTGGGSCCCCEEEEEEEETTCSSCCGGGCTTSEEEESCTTCTTTTHHHHHHSGGGC----STT----CGGGSSS-EEE
T ss_pred cCccccCCCcceEEEEEEEEcCCCCCCHHHcCCCCccCCCCCCccchhhHHHHHhhcc----CCC----CHHHhhh-hcc
Confidence 632 23 999999998778899999999999999999999999999998763 346 7899998 999
Q ss_pred cCCCCccccCCCchhhhhCCCC--CCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhccC
Q psy11925 249 VPGIDEEEKDAPASLEKICPKA--TRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSK 316 (458)
Q Consensus 249 ~pG~~~~~~~~~~~LC~lC~g~--~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~ 316 (458)
+||+.. +++||+||.|. ++| ||+ |||||+|| ||||||||+||.+| ++|+ ++
T Consensus 148 ~PG~~~-----~~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GAfrCL~eg-GDVAFvkh~tV~~~-------~~g~----~~ 210 (342)
T 3skp_A 148 APGSKK-----DSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVPQN-------TGGK----NP 210 (342)
T ss_dssp CTTSCT-----TSGGGTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHHT-CSEEEEETTHHHHT-------STTS----SC
T ss_pred cCCCCC-----ccchhhhcCCCCCCCCCCCCCCcCcCCcchheeeccC-CcEEEEechhHHhh-------cCCC----Cc
Confidence 999954 68999999995 788 899 99999999 99999999999998 8898 88
Q ss_pred CCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCC----ccccc
Q psy11925 317 GGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKP----EIFKL 392 (458)
Q Consensus 317 ~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~~----~~F~l 392 (458)
++|++++.++||| ||||||+|+||++|++|||+++|+|+||+|+++ .+.|+++|+++|++||++. +.|+|
T Consensus 211 ~~wa~~~~~~dye--LLC~dGtr~pv~~~~~C~la~vP~~aVv~r~~~----~~~i~~~L~~~q~~fg~~~~~~~~~F~l 284 (342)
T 3skp_A 211 DPWAKNLNEKDYE--LLCLDGTRKPVEEYANCHLARAPNHAVVTRKDK----EACVHKILRQQQHLFGSNVTDCSGNFCL 284 (342)
T ss_dssp STTTTTCCGGGEE--EECTTSCEEEGGGGGGSCSEEECCCEEEECGGG----HHHHHHHHHHHHHHHSTTCSCCSSSCCT
T ss_pred hhhhccCChhhEE--EECCCCCcCCCCCCccceEEEccCCeEEecCch----HHHHHHHHHHHHHHhCcCCCCCCCCccc
Confidence 9999999999999 999999999999999999999999999999963 3579999999999999852 57999
Q ss_pred cccCCCCCCccccCCCCcceeCC-CCCHHHH--HHHHHhhhhhhHHHHHhhcccCcceee
Q psy11925 393 FGSFMGKPDVLFLNPATGVEVLP-DQATDVE--TNYSNNMLSKVHARYLFGLKSFNFYTL 449 (458)
Q Consensus 393 F~s~~~~kdllF~D~t~~l~~v~-~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~ 449 (458)
|+|+. |||||+|+|++|++|| +.+|+.| .+|.+.|. ++|.|+.=.|
T Consensus 285 F~s~~--kdLLFkDst~~L~~~~~~~~~~~~Lg~~y~~~~~---------~l~~c~~~~~ 333 (342)
T 3skp_A 285 FRSET--KDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKAVG---------NLRKCSTSSL 333 (342)
T ss_dssp TCCSS--SCSSSCTTCCEEEECSTTCSHHHHSCHHHHHHHH---------HHHHHSCCHH
T ss_pred cCCCC--CCcceecCccCcccCCCCCCHHHHhhHHHHHHHH---------HhhcCCcchh
Confidence 99963 9999999999999998 6799999 47776554 5666765443
No 8
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=100.00 E-value=1.3e-81 Score=637.18 Aligned_cols=299 Identities=33% Similarity=0.576 Sum_probs=271.9
Q ss_pred CceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEEee
Q psy11925 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKEKY 175 (458)
Q Consensus 97 ~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E~y 175 (458)
++|||||+|+.|++||++|+.++ ++++|+|+|++++|+.+||++|++|+||++++||+++|+|+ +.++|+||++|.|
T Consensus 5 ~~vrwCv~s~~E~~KC~~l~~~~--~~~~~~veCv~~~s~~~Ci~aI~~g~aD~~~ld~~~~~~A~~~~~~l~pi~~e~~ 82 (332)
T 1iej_A 5 SVIRWCTISSPEEKKCNNLRDLT--QQERISLTCVQKATYLDCIKAIANNEADAITLDGGQVFEAGLAPYKLKPIAAEVY 82 (332)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHT--TTSSEEEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHTSTTTCCEEEEEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHH--HhcCCceEEEEcCCHHHHHHHHHcCCCcEEEeCccceeEecccccCCEEEEEEEe
Confidence 35999999999999999999875 67889999999999999999999999999999999999998 7899999999999
Q ss_pred cCC---cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCc---cccccccccccCcc
Q psy11925 176 GNE---KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCP---YYKGVAEFFTGGSC 248 (458)
Q Consensus 176 ~~~---~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~---~~~~~~~FFsg~sC 248 (458)
+.. ... |+||||||+|++ +|+||||||+||||+++||||++|++.|+++|+|+..+|+ ..+++++||+ +||
T Consensus 83 ~~~~~~~~~Y~aVaVVkkdS~i-sl~dLkGKksChtg~~stsGw~~Pi~~L~~~g~i~~~~~~~~~~~~a~s~fF~-~sC 160 (332)
T 1iej_A 83 EHTEGSTTSYYAVAVVKKGTEF-TVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFS-ASC 160 (332)
T ss_dssp ECSSSEESEEEEEEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTSSCCCCGGGCCHHHHHHHHSS-EEE
T ss_pred cCCCCCCCceEEEEEEeCCCCC-CHHHHCCCceEcCCCCCccchHHHHHHHHHcCCCCccccccchHHHHHHHhcc-ccc
Confidence 763 234 999999999998 8999999999999999999999999999999999988873 5789999998 999
Q ss_pred cCCCCccccCCCchhhhhCCC--CCCC-------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhccCCC
Q psy11925 249 VPGIDEEEKDAPASLEKICPK--ATRV-------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGG 318 (458)
Q Consensus 249 ~pG~~~~~~~~~~~LC~lC~g--~~~C-------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~ 318 (458)
+||+++ .++||+||.| .++| ||+ |||||+||+||||||+|+||.++
T Consensus 161 ~pG~~~-----~~~LC~lC~g~~~~~C~~~~~y~Gy~GA~rCL~eg~GDVAFvk~~~v~~~------------------- 216 (332)
T 1iej_A 161 VPGATI-----EQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNEN------------------- 216 (332)
T ss_dssp CTTCCS-----CGGGGTTCCSCTTTTTSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHH-------------------
T ss_pred cCCCCc-----ccchhhhhcCCCcccCCCCcccCCchHHHHHHHhCCCcEEEEeccchhhh-------------------
Confidence 999975 4799999999 4788 899 99999999999999999999986
Q ss_pred CCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCCc-cccccccCC
Q psy11925 319 RAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPE-IFKLFGSFM 397 (458)
Q Consensus 319 wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~~~-~F~lF~s~~ 397 (458)
|. ..++||+ ||||||+|+||++|++|||+++|+|+||+|++.+.. +|+++|++++++||++++ .|+||+|+.
T Consensus 217 ~~--~~~~dy~--lLC~dg~r~pv~~~~~C~la~vP~~aVv~r~d~~~~---~i~~~l~~~~~~fg~~~~~~F~lF~s~~ 289 (332)
T 1iej_A 217 AP--DQKDEYE--LLCLDGSRQPVDNYKTCNWARVAAHAVVARDDNKVE---DIWSFLSKAQSDFGVDTKSDFHLFGPPG 289 (332)
T ss_dssp CT--TSGGGEE--EECTTSCEEEGGGTTTSCSEEEECCEEEECSSTTHH---HHHHHHHHHHHHHSTTCSSSCCSSCCCS
T ss_pred cc--cccccce--EECCCCCccCcCcCccceeccCCCceEEEcCCCCHH---HHHHHHHHHHHHhcCCCCCCeeeccCCC
Confidence 11 1578999 999999999999999999999999999999987733 599999999999998765 799999987
Q ss_pred CC----CCccccCCCCcceeCC-CCCHHHHH--HHHHhhh
Q psy11925 398 GK----PDVLFLNPATGVEVLP-DQATDVET--NYSNNML 430 (458)
Q Consensus 398 ~~----kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~ 430 (458)
++ |||||+|+|++|++|| ..+|+.|. +|..+|.
T Consensus 290 ~~~~~~kdllF~D~t~~l~~~~~~~~~~~~lg~~y~~a~~ 329 (332)
T 1iej_A 290 KKDPVLKDLLFKDSAIMLKRVPSLMDSQLYLGFEYYSAIQ 329 (332)
T ss_dssp SSCGGGSSCSSCTTEEEEEECCTTCCHHHHHCHHHHHHHH
T ss_pred CCCCCCCCCcEecCccCceeCCCCCCHHHHcCHHHHHHHH
Confidence 54 9999999999999999 57999997 6766654
No 9
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=100.00 E-value=4.5e-80 Score=626.56 Aligned_cols=305 Identities=34% Similarity=0.622 Sum_probs=266.1
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKE 173 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E 173 (458)
|.++|||||+|+.|++||++|+.++... .+|+|+|+.++|+.+||++|++|+||++++||+++|+|+ +.++|+||++|
T Consensus 3 ~~~~vrwCv~s~~e~~KC~~l~~~~~~~-~~~~vecv~~~~~~~ci~aI~~g~AD~~~ld~~~~~~A~~~~~~l~pi~~e 81 (334)
T 1h45_A 3 RRRSVQWCAVSQPEATKCFQWQRNMRRV-RGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAE 81 (334)
T ss_dssp CTTSEEEEESSHHHHHHHHHHHHHHHHT-TCCCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhc-CCCceEEEEcCCHHHHHHHHHcCCCCEEEeCccceEEeecCccCCEEEEEE
Confidence 4578999999999999999999876333 278999999999999999999999999999999999998 57999999999
Q ss_pred eecCC---cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCC--ccccccccccccCc
Q psy11925 174 KYGNE---KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSC--PYYKGVAEFFTGGS 247 (458)
Q Consensus 174 ~y~~~---~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c--~~~~~~~~FFsg~s 247 (458)
.|+.+ ... |+||||||+|++ +|+||||||+||||+++||||++|++.|+ +.|+..+| +.++++++||+ +|
T Consensus 82 ~~~~~~~~~~~Y~avaVVkk~s~i-sl~dLkGKksch~~~~stsGw~iP~~~L~--~~i~~~~~~~~~~~a~~~fFs-~s 157 (334)
T 1h45_A 82 VYGTERQPRTHYYAVAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLR--PFLDWTGPPEPIEAAVARFFS-AS 157 (334)
T ss_dssp EEECSSSEESEEEEEEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHG--GGSCCCCTTSCHHHHHHHHSS-EE
T ss_pred eecCCCCCCCceEEEEEEeCCCCC-CHHHHCCCceecCCCCCccchhHHHHHHH--hhcCcCCCcchhhHHHHHhcc-cc
Confidence 99863 234 999999999998 89999999999999999999999999998 56776666 45789999998 99
Q ss_pred ccCCCCccccCCCchhhhhCCC--CCCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhcc
Q psy11925 248 CVPGIDEEEKDAPASLEKICPK--ATRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315 (458)
Q Consensus 248 C~pG~~~~~~~~~~~LC~lC~g--~~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~ 315 (458)
|+||++.. .+++||+||.| .++| ||+ |||||+||+||||||+|+||.++ +
T Consensus 158 C~pg~~~~---~y~~LC~lC~g~~~~~C~~s~~~~y~G~~GA~rCL~eg~gDVAFv~~~~v~~~-------~-------- 219 (334)
T 1h45_A 158 CVPGADKG---QFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIGESTVFED-------L-------- 219 (334)
T ss_dssp ECTTSCTT---TCGGGTTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHH-------C--------
T ss_pred ccCCCCcc---chhhHHHhcCCCCCCccCCCCCccccCchHHHHHHHhCCCcEEEEecchhhhh-------h--------
Confidence 99999763 24799999999 3678 799 99999999999999999999976 2
Q ss_pred CCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCC-ccccccc
Q psy11925 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKP-EIFKLFG 394 (458)
Q Consensus 316 ~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~~-~~F~lF~ 394 (458)
+....++||+ ||||||+|+||++|+.|||+++|+|+||+|++.+. +++|+++|++++++||++. +.|+||+
T Consensus 220 ----~~~~~~~dy~--lLC~dg~~~pv~~~~~C~la~vP~~avv~r~~~~~--~~~i~~~l~~~~~~fg~~~~~~f~lF~ 291 (334)
T 1h45_A 220 ----SDEAERDEYE--LLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGK--EDAIWNLLRQAQEKFGKDKSPKFQLFG 291 (334)
T ss_dssp ----CCHHHHTTEE--EEETTTEEEEGGGGGGSCSEEEECCEEEEESSSCC--HHHHHHHHHHHHHHHSTTTCSSCCTTC
T ss_pred ----cccCCccceE--EECCCCCccCcCCCccceecccCCceEEEcCCCCh--HHHHHHHHHHHHHHhccCCCcccCccC
Confidence 2223468999 99999999999999999999999999999998764 4679999999999999875 4799999
Q ss_pred cCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhh
Q psy11925 395 SFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNML 430 (458)
Q Consensus 395 s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~ 430 (458)
|+.+++||||+|+|++|+++| ..+|+.|. +|..+|.
T Consensus 292 s~~~~k~LlFkD~t~~l~~~~~~~~~~~yLg~~y~~~~~ 330 (334)
T 1h45_A 292 SPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQ 330 (334)
T ss_dssp CCTTCCCSSSCTTCCEEEECCTTCCHHHHHTC-------
T ss_pred CCccCCCCcccCCCcceeeCCCCCCHHHHhCHHHHHHHH
Confidence 987669999999999999998 57999987 5655554
No 10
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=100.00 E-value=1.1e-78 Score=614.79 Aligned_cols=301 Identities=36% Similarity=0.615 Sum_probs=269.2
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCC---CCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDI---RPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPI 170 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~---~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pi 170 (458)
|.++|||||+|+.|++||++|+.++ ++++ +|+|+|+.++|+.+||++|++|+||++++||+++|+|+ +.++|+||
T Consensus 2 p~~~vrwCv~s~~e~~KC~~l~~~~-~~~~~~~~~~vecv~~~dy~~ci~ai~~g~aD~~~l~~~~~~~A~~~~~~l~pi 80 (327)
T 1ryo_A 2 PDKTVRWCAVSEHEATKCQSFRDHM-KSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPV 80 (327)
T ss_dssp --CEEEEEEEHHHHHHHHHHHHHHH-HHHSCTTSCEEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHH-hhccccCCCceEEEecCCHHHHHHHHHcCCCcEEEeCccceeEEecccCCCEEE
Confidence 4567999999999999999999876 5566 68999999999999999999999999999999999998 78999999
Q ss_pred EEEeecCC---cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccC
Q psy11925 171 LKEKYGNE---KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGG 246 (458)
Q Consensus 171 l~E~y~~~---~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~ 246 (458)
++|.|+.. ... |+||||||+|++ +|+||||||+||||+++|+||++|++.|+++ ++.. .++..+++++||+ +
T Consensus 81 ~ae~~~~~~~~~~~Y~sVaVVkkdS~i-sl~dLkGKk~ch~~~~stsG~~iP~~~L~~~-~~~~-~~~~~~~~~~fF~-~ 156 (327)
T 1ryo_A 81 VAEFYGSKEDPQTFYYAVAVVKKDSGF-QMNQLRGKKSCHTGLGRSAGWNIPIGLLYCD-LPEP-RKPLEKAVANFFS-G 156 (327)
T ss_dssp EEEEEECSSSEESEEEEEEEEETTCCC-CGGGCTTCCEEESCTTCTTTTHHHHHHHGGG-SCSC-CCSHHHHHHHHSS-S
T ss_pred EEEEecCCCCCCCceEEEEEEeCCCCC-ChHHhCCCceEcCCCCCcchhhhHHHHHHhh-cccc-cccchhhHHHhcc-c
Confidence 99999763 234 999999999998 8999999999999999999999999999987 3432 3478899999998 9
Q ss_pred cccCCCCccccCCCchhhhhCCCCCCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhccC
Q psy11925 247 SCVPGIDEEEKDAPASLEKICPKATRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSK 316 (458)
Q Consensus 247 sC~pG~~~~~~~~~~~LC~lC~g~~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~ 316 (458)
||+||+... .+++||+||.| | ||+ |||||+||+||||||+|++|.++
T Consensus 157 sC~pg~~~~---~y~~LC~lC~g---C~~~~~~~y~G~~gA~rcL~eG~gDVAfv~~~~v~~~----------------- 213 (327)
T 1ryo_A 157 SCAPCADGT---DFPQLCQLCPG---CGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFEN----------------- 213 (327)
T ss_dssp EECTTSCTT---TCGGGGTTSTT---CCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHH-----------------
T ss_pred cccCCcccc---ccchhhhhccc---CCCCCCCCccCcHHHHHHHHcCCccEEEEeccchhhh-----------------
Confidence 999999763 24799999998 5 899 99999999999999999999875
Q ss_pred CCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCCc-ccccccc
Q psy11925 317 GGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPE-IFKLFGS 395 (458)
Q Consensus 317 ~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~~~-~F~lF~s 395 (458)
|+++..++||+ ||||||+|+||++|++|||+++|+|+||+|++.+. .++|+++|++++++||+++. .|+||+|
T Consensus 214 --~~~~~~~~d~~--lLc~dg~~~pi~~~~~C~l~~~P~~~vv~r~~~~~--~~~i~~~l~~~~~~fg~~~~~~F~lF~s 287 (327)
T 1ryo_A 214 --LANKADRDQYE--LLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGK--EDLIWELLNQAQEHFGKDKSKEFQLFSS 287 (327)
T ss_dssp --CCSHHHHTTEE--EECTTSCEEEGGGGGGSCSEEEECCEEEECSSSCC--HHHHHHHHHHHHHHHSTTTCSSCCTTCC
T ss_pred --hhhccccccee--EEccCCcccCCCCCCcceeccCCCceEEEeCCCCH--HHHHHHHHHHHHHHhCcCCCCceeeeCC
Confidence 55556788999 99999999999999999999999999999998775 36799999999999998765 8999999
Q ss_pred CCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhh
Q psy11925 396 FMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNML 430 (458)
Q Consensus 396 ~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~ 430 (458)
+.+ |||||+|+|++|+.|| ..+|+.|. +|..+|.
T Consensus 288 ~~~-knllF~D~t~~l~~~~~~~~~~~~lg~~y~~~~~ 324 (327)
T 1ryo_A 288 PHG-KDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIR 324 (327)
T ss_dssp TTC-SSSSSCTTEEEEEECCTTCCHHHHHCHHHHHHHH
T ss_pred CCC-CCCCEecCcccceeCCCCCCHHHHcCHHHHHHHH
Confidence 876 9999999999999999 68999997 6766654
No 11
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=100.00 E-value=7.6e-78 Score=657.04 Aligned_cols=303 Identities=34% Similarity=0.635 Sum_probs=272.3
Q ss_pred CceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEEee
Q psy11925 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKEKY 175 (458)
Q Consensus 97 ~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E~y 175 (458)
.+|||||+|+.|++||++|+.++ +++++|.|+|++++|+++||++|++|+||++++|++++|+|+ +.|+|+||++|.|
T Consensus 4 ~~vrwCv~s~~E~~KC~~l~~~~-~~~~~~~i~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~L~pi~~E~y 82 (691)
T 1cb6_A 4 RSVQWCAVSQPEATKCFQWQRNM-RKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVY 82 (691)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHH-HHTTCCCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEE
T ss_pred CeEEEEEcCHHHHHHHHHHHHHH-hhccCCceEEEeCCCHHHHHHHHhcCCCCEEEEChHHhheeccccCCCEEEEEEee
Confidence 46999999999999999999876 678899999999999999999999999999999999999998 7899999999999
Q ss_pred cCC---cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCC--ccccccccccccCccc
Q psy11925 176 GNE---KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSC--PYYKGVAEFFTGGSCV 249 (458)
Q Consensus 176 ~~~---~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c--~~~~~~~~FFsg~sC~ 249 (458)
+.. ... |+||||||++++ +|+||||||+||||++++|||++||+.|+++ |++.+| +.++++++||+ +||+
T Consensus 83 ~~~~~~~~~Y~aVAVVkk~s~~-~l~dLkGkksCHtg~g~taGw~iPi~~L~~~--i~~~~~~~~~~~a~s~FFs-~SC~ 158 (691)
T 1cb6_A 83 GTERQPRTHYYAVAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLRPF--LNWTGPPEPIEAAVARFFS-ASCV 158 (691)
T ss_dssp EETTEEESEEEEEEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHSGGG--SCCCCTTSCHHHHHHHHSS-EEEC
T ss_pred cCCCCCCCceEEEEEEECCCCC-CHHHhCCCCcccCCCCCccchhhHHHHHHHh--ccccCCcchHHHHHHHhcC-cccC
Confidence 763 234 999999999987 7999999999999999999999999999987 666666 46789999998 9999
Q ss_pred CCCCccccCCCchhhhhCCC--CCCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhccCC
Q psy11925 250 PGIDEEEKDAPASLEKICPK--ATRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKG 317 (458)
Q Consensus 250 pG~~~~~~~~~~~LC~lC~g--~~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~ 317 (458)
||++.. .+++||+||.| .++| ||+ |||||+||+||||||+|+||.++
T Consensus 159 PG~~~~---~y~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tv~~~------------------ 217 (691)
T 1cb6_A 159 PGADKG---QFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFED------------------ 217 (691)
T ss_dssp TTCCTT---TCGGGGTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETHHHHHH------------------
T ss_pred CCCCcc---cchhhhHhhcCCCcCccCCCCcccCcCcHHHHHHHHhcCCcEEEEecceeccc------------------
Confidence 999764 24799999999 4788 899 99999999999999999999986
Q ss_pred CCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCCc-cccccccC
Q psy11925 318 GRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPE-IFKLFGSF 396 (458)
Q Consensus 318 ~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~~~-~F~lF~s~ 396 (458)
|+....++||+ ||||||+|+||++|++|||+++|+|+||+|++... .++|+++|++++++||++.+ .|+||+|+
T Consensus 218 -~~~~~~~~dye--LLC~dGtr~pv~~~~~C~la~vP~~aVv~r~~~~~--~~~i~~~L~~~~~~fg~~~~~~F~lF~s~ 292 (691)
T 1cb6_A 218 -LSDEAERDEYE--LLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGK--EDAIWNLLRQAQEKFGKDKSPKFQLFGSP 292 (691)
T ss_dssp -CCSTTTGGGEE--EECTTSCEEEGGGTTTSCSEEEECCEEEEESSSCC--HHHHHHHHHHHHHHHSTTSCSSCCSSCCC
T ss_pred -ccccCCccceE--EECCCCCcCCcccCccceecccCCceEEEcCCcch--HHHHHHHHHHHHHHhccCCCCcccccCCc
Confidence 34456789999 99999999999999999999999999999998763 35799999999999998754 79999998
Q ss_pred CCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhh
Q psy11925 397 MGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNML 430 (458)
Q Consensus 397 ~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~ 430 (458)
.+++||||+|+|++|+.+| ..+|+.|. +|.+++.
T Consensus 293 ~~~kdLLFkDst~~L~~~~~~~~~~~yLg~~Y~~~i~ 329 (691)
T 1cb6_A 293 SGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQ 329 (691)
T ss_dssp TTCCCSSSCTTCCEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ccCCCccccccchhheeCCCCCCHHHHhhHHHHHHHH
Confidence 7679999999999999998 57999997 5666654
No 12
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=100.00 E-value=2e-77 Score=653.26 Aligned_cols=300 Identities=32% Similarity=0.573 Sum_probs=268.1
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKE 173 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E 173 (458)
|.++|||||+|+.|++||++|+.++ ++++|+|+|++++|+++||++|++|+||++++|++++|+|+ +.|+|+||++|
T Consensus 3 ~~~~vrwCv~s~~E~~KC~~l~~~~--~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~~L~pi~~E 80 (686)
T 2d3i_A 3 PKSVIRWCTISSPEEKKCNNLRDLT--QQERISLTCVQKATYLDCIKAIANNEADAISLDGGQVFEAGLAPYKLKPIAAE 80 (686)
T ss_dssp --CEEEEEESSHHHHHHHHHHHHHT--TTSSSEEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEEEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHH--hhcCCceEEEeCCCHHHHHHHHHcCCCCEEEeCccceEEeccccCCCEEEEEE
Confidence 4467999999999999999999865 67899999999999999999999999999999999999998 78999999999
Q ss_pred eecCC---cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCc---cccccccccccC
Q psy11925 174 KYGNE---KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCP---YYKGVAEFFTGG 246 (458)
Q Consensus 174 ~y~~~---~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~---~~~~~~~FFsg~ 246 (458)
.|+.. ... |+||||||++++ +|+||||||+||||++++|||++||++|+++|+|+..+|+ ..+++++||+ +
T Consensus 81 ~y~~~~~~~~~Y~aVAVVkk~s~~-tl~dLkGKksCHtg~g~taGw~iPi~~L~~~g~i~~~~~~~~~~~~a~s~FFs-~ 158 (686)
T 2d3i_A 81 VYEHTEGSTTSYYAVAVVKKGTEF-TVNDLQGKTSCHTGLGRSAGWNIPIGTLIHRGAIEWEGIESGSVEQAVAKFFS-A 158 (686)
T ss_dssp EBCCTTCCBSEEEEEEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTSSCCCSGGGCCHHHHHHHHSS-E
T ss_pred eecCCCCCCCceEEEEEEECCCCC-CHHHhCCCccccCCCCCccchHHHHHHHHHcCCccccccccccHHHHHHHhcC-C
Confidence 99763 234 999999999987 7999999999999999999999999999999999988874 5789999998 9
Q ss_pred cccCCCCccccCCCchhhhhCCCCCCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhccC
Q psy11925 247 SCVPGIDEEEKDAPASLEKICPKATRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSK 316 (458)
Q Consensus 247 sC~pG~~~~~~~~~~~LC~lC~g~~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~ 316 (458)
||+||++. .++||+||.|..+| ||+ |||||+||+||||||+|+||.++.
T Consensus 159 SC~PG~~~-----~~~LC~lC~g~~~C~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tv~~~~---------------- 217 (686)
T 2d3i_A 159 SCVPGATI-----EQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENA---------------- 217 (686)
T ss_dssp EECTTCCS-----CGGGTTTCCSCTTTTTSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHC----------------
T ss_pred cccCCCCC-----ccchhhhcCCCCCcCCCCcccCcCcHHHHHHHHhcCCcEEEEecceecccc----------------
Confidence 99999975 37999999997667 899 999999999999999999999862
Q ss_pred CCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCCc-cccccc-
Q psy11925 317 GGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPE-IFKLFG- 394 (458)
Q Consensus 317 ~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~~~-~F~lF~- 394 (458)
+.. ++||| ||||||+|+||++|++|||+++|+|+||+|++... ++|+++|++++++||++.+ .|+||+
T Consensus 218 ---~~~--~~dye--LLC~dGtr~pv~~~~~C~la~vP~~aVv~r~~~~~---~~i~~~L~~~~~~fg~~~~~~F~lF~s 287 (686)
T 2d3i_A 218 ---PDQ--KDEYE--LLCLDGSRQPVDNYKTCNWARVAAHAVVARDDNKV---EDIWSFLSKAQSDFGVDTKSDFHLFGP 287 (686)
T ss_dssp ---GGG--GGGEE--EECTTSCEECGGGGGGSCSEEEECCEEEECSSTTH---HHHHHHHHHHHHHHSTTCCSSCCSSCC
T ss_pred ---ccC--ccceE--EECCCCCcCCCccCccceecccCCceEEEcCCCCH---HHHHHHHHHHHHHhccCCCccccccCC
Confidence 112 78999 99999999999999999999999999999998663 4699999999999998754 799999
Q ss_pred ----cCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhh
Q psy11925 395 ----SFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNML 430 (458)
Q Consensus 395 ----s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~ 430 (458)
|+.+ +||||+|+|++|+.+| ..+|+.|. +|.+++.
T Consensus 288 ~~~~s~~~-kdLlFkDst~~L~~~~~~~~~~~yLg~~Y~~~i~ 329 (686)
T 2d3i_A 288 PGKKDPVL-KDLLFKDSAIMLKRVPSLMDSQLYLGFEYYSAIQ 329 (686)
T ss_dssp CSSSCGGG-SSCSSCTTCCEEEECCTTCCHHHHHCHHHHHHHH
T ss_pred ccccCCcC-CccceecCchhhhcCCCCCCHHHHhCHHHHHHHH
Confidence 4433 9999999999999998 57899987 5655544
No 13
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=100.00 E-value=4.2e-77 Score=648.11 Aligned_cols=299 Identities=32% Similarity=0.578 Sum_probs=266.4
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcC--CCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSR--DIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPIL 171 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~--~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil 171 (458)
|..+|||||+|+.|++||++|+.++... +++|.|+|+++.|+.+||++|++|+||++++|++++|+|+ +.|+|+||+
T Consensus 8 ~~~~vrwCt~S~~E~~KC~~l~~~~~~~~~~~~p~~~Cv~~~d~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~L~Pi~ 87 (687)
T 3mc2_A 8 PEKTIRWCVVSDHEATKCSSFRDNMKKVLPAGGPAVTCVRKMSHPECIRDISANKVDAVTVDGALVAEADLPHHSLKPIM 87 (687)
T ss_dssp -CCCEEEEECSSHHHHHHHHHHHHHHHHCSSSSCCEEEEECSCHHHHHHHHHTTSCCBEEECTTGGGSCSSTTCCEEEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHHHhccCCCCceEEEeCCCHHHHHHHHHCCCCCEEEEChHHHHhhhcccCCceEEE
Confidence 7789999999999999999999875543 5789999999999999999999999999999999999997 789999999
Q ss_pred EEeecCCc---ce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCc
Q psy11925 172 KEKYGNEK---DL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGS 247 (458)
Q Consensus 172 ~E~y~~~~---~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~s 247 (458)
+|.|+.++ .. |+||||||++++ +|+||||||+||||++++|||++|++.|+ + .|+.++++++||+ +|
T Consensus 88 ~E~y~~~~~~~~~YyaVAVVkK~s~i-~l~dLrGKksCHtg~g~taGw~iPi~~L~-----~--~~~~~~avs~FFs-~S 158 (687)
T 3mc2_A 88 AEYYGSKDDPKTHYYVVAMAKKGTGF-QLNQLRGKKSCHTGLGWSAGWYVPLSTLL-----P--SGSRETAAATFFS-SS 158 (687)
T ss_dssp EEEEECSSSEECEEEEEEEEETTTCC-CTTTTTTCEEEESCTTCTTTTHHHHHHTC-----C--TTCCSSSHHHHSS-EE
T ss_pred EEeeecCCCCCceeEEEEEEECCCCC-CHHHcCCCCcccCCCCCccchhhhHHHhc-----C--CCchhHHHHHhhh-hc
Confidence 99998765 44 999999999998 59999999999999999999999999986 2 5688899999998 99
Q ss_pred ccCCCCccccCCCchhhhhCCC--CCCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhcc
Q psy11925 248 CVPGIDEEEKDAPASLEKICPK--ATRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315 (458)
Q Consensus 248 C~pG~~~~~~~~~~~LC~lC~g--~~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~ 315 (458)
|+||++.. .+++||+||.| .++| ||+ |||||+||+||||||+|+||.++ ++++
T Consensus 159 CvPG~~~~---~y~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~GDVAFvkh~tV~e~-------~~~~----- 223 (687)
T 3mc2_A 159 CVPCADGK---MFPSLCQLCAGKGTDKCACSSREPYFGSWGALKCLQDGTADVSFVKHLTVFEA-------MPTK----- 223 (687)
T ss_dssp ECTTSCTT---TCGGGBSSCCCCTTSTTCSSTTSSSCHHHHTTHHHHTTSCSEEEEEHHHHTTS-------CSST-----
T ss_pred ccCCcCCC---cchHHHhhcCCCCCCcCCCCCCCcCcCccchhhhhhhCCCcEEEEEchhhhhh-------cCCC-----
Confidence 99999753 35799999999 5788 899 99999999999999999999997 4442
Q ss_pred CCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-Cccccccc
Q psy11925 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKK-PEIFKLFG 394 (458)
Q Consensus 316 ~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~-~~~F~lF~ 394 (458)
..++||+ ||||||+|+||++|++|||+++|+|+||+|++.. ..+.|+++|..++++||++ .+.|+||+
T Consensus 224 -------~~~~dye--LLCpDGtr~pv~~~~~C~la~~P~~aVv~r~~~~--~~~~i~~~L~~~q~~fg~~~~~~f~lF~ 292 (687)
T 3mc2_A 224 -------ADRDQYE--LLCMDNTRRPVEEYEQCYLARVPSHVVVARSVDG--KEDSIQELLRVAQEHFGKDKSSPFQLFG 292 (687)
T ss_dssp -------TTTTTEE--EECTTSCEEETTCGGGSCSEEEECCEEEEESSSS--CHHHHHHHHHHHHHHSSSSSSSSCCSSC
T ss_pred -------CCcccEE--EEcCCCCcCCCCCCCCCceecccCceEEEccCcc--hHHHHHHHHHHHHHHhccCCCccceeec
Confidence 3588999 9999999999999999999999999999999754 2357999999999999986 45799999
Q ss_pred cCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhh
Q psy11925 395 SFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNM 429 (458)
Q Consensus 395 s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~ 429 (458)
|+.+ +||||+|+|++|+.|| ..+++.|. +|.+.+
T Consensus 293 s~~g-kdLlF~Dst~~L~~ip~~~~~~~yLg~~Y~~~i 329 (687)
T 3mc2_A 293 SPHG-EDLLFTDAAHGLLRVPRKIDISLYLGYEFLSAF 329 (687)
T ss_dssp CSSS-SSCSSCTTCCEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCC-ceeeecccccccccCCCCCCHHHhhCHHHHHHH
Confidence 9876 9999999999999998 55888887 444443
No 14
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=100.00 E-value=5.7e-77 Score=649.47 Aligned_cols=304 Identities=35% Similarity=0.600 Sum_probs=263.6
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcC--CCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSR--DIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPIL 171 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~--~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil 171 (458)
|.++|||||+|+.|+.||++|+.++.+. +++|.|+|+++.|+++||++|++|+||++++|++++|+|+ +.|+|+||+
T Consensus 21 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~L~Pv~ 100 (698)
T 3v83_A 21 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVV 100 (698)
T ss_dssp --CEEEEEEEHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEE
T ss_pred CCCcEEEeeCCHHHHHHHHHHHHHHHhhccCCCCceEEEecCCHHHHHHHHHcCCCCEEEEChHHHHhhccCcCCcEEEE
Confidence 6678999999999999999999875443 4789999999999999999999999999999999999998 689999999
Q ss_pred EEeecCCc---ce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCc
Q psy11925 172 KEKYGNEK---DL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGS 247 (458)
Q Consensus 172 ~E~y~~~~---~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~s 247 (458)
+|.|+.++ .. |+||||||++++ +|+||||||+||||++++|||++|++.|+- .+.. ..++..+++++||+ +|
T Consensus 101 ~E~y~~~~~~~~~YyaVAVVkk~s~~-~l~dLrGKksChtg~g~taGw~iPi~~L~~-~~~~-~~~~~~~avs~FFs-~S 176 (698)
T 3v83_A 101 AEFYGSKEDPQTFYYAVAVVKKDSGF-QMNQLRGKKSCHTGLGRSAGWNIPIGLLYC-DLPE-PRKPLEKAVANFFS-GS 176 (698)
T ss_dssp EEEEECSSSEESEEEEEEEEESSCCC-CGGGCTTCCEEESCTTCTTTTHHHHHHHGG-GSCS-CCCSHHHHHHHHSS-SE
T ss_pred EEeeccCCCCCcceEEEEEEeCCCCC-CHHHcCCCCcccCCCCCcccHHHHHHHHee-ccCC-CCchHHHHHHHhhh-cc
Confidence 99998764 34 999999999998 499999999999999999999999999952 2211 13477889999998 99
Q ss_pred ccCCCCccccCCCchhhhhCCCCCCC-------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhccCCCC
Q psy11925 248 CVPGIDEEEKDAPASLEKICPKATRV-------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319 (458)
Q Consensus 248 C~pG~~~~~~~~~~~LC~lC~g~~~C-------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~w 319 (458)
|+||++.. .+++||+||.| ..| ||+ |||||+||+||||||+|+||.++ ++++
T Consensus 177 C~PG~~~~---~y~~LC~LC~g-C~~s~~e~Y~Gy~GAfrCL~eg~GDVAFVk~~tV~e~-------~~~~--------- 236 (698)
T 3v83_A 177 CAPCADGT---DFPQLCQLCPG-CGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFEN-------LANK--------- 236 (698)
T ss_dssp ECTTSCTT---TCGGGGTTSTT-CCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHH-------CCCH---------
T ss_pred ccCCCCCC---cChhhhhhccC-CCCCCCCcCcCchhHHHhhhcCCCcEEEEEchhhhhh-------ccCC---------
Confidence 99999764 34799999998 222 999 99999999999999999999998 3332
Q ss_pred CCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-CccccccccCCC
Q psy11925 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKK-PEIFKLFGSFMG 398 (458)
Q Consensus 320 a~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~-~~~F~lF~s~~~ 398 (458)
..++||| ||||||+|+||++|++|||+++|+|+||+|++.. ..+.|+++|.+++++||++ .+.|+||+|+.+
T Consensus 237 ---~~~~dye--LLC~DGtr~pv~~~~~C~la~vP~~aVv~r~~~~--~~~~i~~~L~~~q~~fg~~~~~~F~lF~s~~~ 309 (698)
T 3v83_A 237 ---ADRDQYE--LLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGG--KEDLIWELLNQAQEHFGKDKSKEFQLFSSPHG 309 (698)
T ss_dssp ---HHHTTEE--EECTTSCEECGGGGGGSCSEEEECCEEEEETTSS--CHHHHHHHHHHHHHHHSTTCCCSCCTTCCTTC
T ss_pred ---CChhheE--EecCCCCcCCCCCCCCCeeeeccCceEEEcCCcc--hHHHHHHHHHHHHHHhCcCCCCcceeecCCCC
Confidence 3478999 9999999999999999999999999999999753 2357999999999999986 457999999865
Q ss_pred CCCccccCCCCcceeCC-CCCHHHHH--HHHHhhh
Q psy11925 399 KPDVLFLNPATGVEVLP-DQATDVET--NYSNNML 430 (458)
Q Consensus 399 ~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~ 430 (458)
+||||+|+|++|+.|| ..+|+.|. +|.+.+.
T Consensus 310 -kdLlF~Dst~~L~~i~~~~~~~~yLg~~Y~~~i~ 343 (698)
T 3v83_A 310 -KDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIR 343 (698)
T ss_dssp -SSSSSCTTCCEEEECCTTCCHHHHHCHHHHHHHH
T ss_pred -CceeeccCccccccCCCCCCHHHhccHHHHHHHH
Confidence 9999999999999998 56888886 5655543
No 15
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=100.00 E-value=1.8e-76 Score=647.18 Aligned_cols=305 Identities=34% Similarity=0.596 Sum_probs=269.7
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKE 173 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E 173 (458)
|.++|||||+|+.|++||++|+.++...+ +|+|+|++++|+++||++|++|+||+++||++++|+|+ +.|+|+||++|
T Consensus 2 ~~~~vrwCv~s~~e~~KC~~l~~~~~~~~-~~~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~~l~pv~aE 80 (689)
T 1blf_A 2 PRKNVRWCTISQPEWFKCRRWQWRMKKLG-APSITCVRRAFALECIRAIAEKKADAVTLDGGMVFEAGRDPYKLRPVAAE 80 (689)
T ss_dssp ---CEEEEESSHHHHHHHHHHHHHHGGGC-SCCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHhcC-CCceEEEEcCCHHHHHHHHHcCCCCEEEEChhHeEEeccccCCCEEEEEE
Confidence 34679999999999999999998763332 79999999999999999999999999999999999998 78999999999
Q ss_pred eecCC---cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCC--ccccccccccccCc
Q psy11925 174 KYGNE---KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSC--PYYKGVAEFFTGGS 247 (458)
Q Consensus 174 ~y~~~---~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c--~~~~~~~~FFsg~s 247 (458)
.|+.. ... |+||||||+|.+ +|+||||||+||||++++|||++||+.|+++ |++.+| +.++++++||+ +|
T Consensus 81 ~y~~~~~~~~~Y~aVAVVkk~s~~-tl~dLkGKksChtg~~~taGw~iPi~~L~~~--i~~~~~~~~~~~a~s~fFs-~S 156 (689)
T 1blf_A 81 IYGTKESPQTHYYAVAVVKKGSNF-QLDQLQGRKSCHTGLGRSAGWIIPMGILRPY--LSWTESLEPLQGAVAKFFS-AS 156 (689)
T ss_dssp EEECSSSEESEEEEEEEEESSCCC-CSTTCTTCCEEESCTTCTTTTHHHHHHHHHH--HTCCTTTSCHHHHHHTTSS-SE
T ss_pred eecCCCCCCcceEEEEEEeCCCCC-CHHHhCCCceecCCCCCccchHHHHHHHHHh--cCccCCcchHHHHHHHhcC-cc
Confidence 99864 234 999999999998 7999999999999999999999999999987 665666 46789999998 99
Q ss_pred ccCCCCccccCCCchhhhhCCC--CCCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhcc
Q psy11925 248 CVPGIDEEEKDAPASLEKICPK--ATRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315 (458)
Q Consensus 248 C~pG~~~~~~~~~~~LC~lC~g--~~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~ 315 (458)
|+||++.. .+++||+||.| .++| ||+ |||||+||+||||||+|+||.++ +++
T Consensus 157 C~PG~~~~---~y~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~GDVAFvk~~tv~~~-------~~~------ 220 (689)
T 1blf_A 157 CVPCIDRQ---AYPNLCQLCKGEGENQCACSSREPYFGYSGAFKCLQDGAGDVAFVKETTVFEN-------LPE------ 220 (689)
T ss_dssp ECTTSCTT---TCGGGSTTCCCCTTSTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHH-------CCS------
T ss_pred ccCCCCcc---cchhhhHhccCCCcCccCCCCCccccCchHHHHHHHHcCCcEEEEeccccchh-------hcc------
Confidence 99999764 24699999999 4788 899 99999999999999999999987 222
Q ss_pred CCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCCCc-cccccc
Q psy11925 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPE-IFKLFG 394 (458)
Q Consensus 316 ~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~~~-~F~lF~ 394 (458)
...++||+ ||||||+|+||++|++|||+++|+|+||+|++.+. +++|+++|++++++||++.. .|+||+
T Consensus 221 ------~~~~~dy~--lLC~dG~r~pv~~~~~C~la~vP~~aVv~r~~~~~--~~~i~~~L~~~~~~fg~~~~~~F~lF~ 290 (689)
T 1blf_A 221 ------KADRDQYE--LLCLNNSRAPVDAFKECHLAQVPSHAVVARSVDGK--EDLIWKLLSKAQEKFGKNKSRSFQLFG 290 (689)
T ss_dssp ------HHHHTTEE--ECCTTSCCBCTTCTTTSCSEEEECCEEEEESSSCC--HHHHHHHHHHHHHHSSTTCCSSCCTTC
T ss_pred ------cCCcccce--EECCCCCccCcCcCccceecCcCCceEEEcCCccH--HHHHHHHHHHHHHHhccCCCccccccc
Confidence 23568999 99999999999999999999999999999998774 46799999999999998754 799999
Q ss_pred cCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhh
Q psy11925 395 SFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNML 430 (458)
Q Consensus 395 s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~ 430 (458)
|+.+++||||+|+|++|+.+| ..+|+.|. +|.+.+.
T Consensus 291 s~~~~~dLlF~D~t~~L~~~~~~~~~~~yLg~~Y~~~i~ 329 (689)
T 1blf_A 291 SPPGQRDLLFKDSALGFLRIPSKVDSALYLGSRYLTTLK 329 (689)
T ss_dssp CCTTSCCCSSCTTCCEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCccCCCccccccchhhccCCCCCCHHHHhhHHHHHHHH
Confidence 987679999999999999998 57999997 5766664
No 16
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=99.26 E-value=1.8e-12 Score=131.05 Aligned_cols=84 Identities=14% Similarity=0.221 Sum_probs=68.6
Q ss_pred CCCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh---------cCCCCCcccc---ccceeeecccccc-c
Q psy11925 3 LLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK---------LGESSGNDWL---INVLGIDSNSTAV-D 69 (458)
Q Consensus 3 ~~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~---------~g~~sS~~~~---~k~LlF~Dst~~v-~ 69 (458)
.+..+++|||+++|||+||+|++.. .++|++.|.++++ |.+|+|+.++ ++||||+|+|..| .
T Consensus 235 pv~~~~~C~la~vP~~aVv~r~d~~-----~~~i~~~l~~~~~~fg~~~~~~F~lF~s~~~~~~~~kdllF~D~t~~l~~ 309 (332)
T 1iej_A 235 PVDNYKTCNWARVAAHAVVARDDNK-----VEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKR 309 (332)
T ss_dssp EGGGTTTSCSEEEECCEEEECSSTT-----HHHHHHHHHHHHHHHSTTCSSSCCSSCCCSSSCGGGSSCSSCTTEEEEEE
T ss_pred CcCcCccceeccCCCceEEEcCCCC-----HHHHHHHHHHHHHHhcCCCCCCeeeccCCCCCCCCCCCCcEecCccCcee
Confidence 3567899999999999999999864 2358999998884 3456787765 5999999999975 4
Q ss_pred CCCCCChhhhhccccchhhhccC
Q psy11925 70 NKKTLHPTQYLQKANYEDVIGRV 92 (458)
Q Consensus 70 ~~~~~~~~~YLg~a~Y~~ai~~~ 92 (458)
.++.++++.||| .+|+.+|+++
T Consensus 310 ~~~~~~~~~~lg-~~y~~a~~~l 331 (332)
T 1iej_A 310 VPSLMDSQLYLG-FEYYSAIQSM 331 (332)
T ss_dssp CCTTCCHHHHHC-HHHHHHHHHH
T ss_pred CCCCCCHHHHcC-HHHHHHHHhc
Confidence 566799999999 6899999864
No 17
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ...
Probab=99.22 E-value=1.9e-12 Score=130.66 Aligned_cols=84 Identities=13% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-cCCC-----CCcccc---ccceeeecccccc-cCCC
Q psy11925 3 LLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-LGES-----SGNDWL---INVLGIDSNSTAV-DNKK 72 (458)
Q Consensus 3 ~~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~g~~-----sS~~~~---~k~LlF~Dst~~v-~~~~ 72 (458)
-++.+++||||++||||||+|++.+ +.|+++|.++|+ ||.. +.+.+. +|||||+|+|+.| .+++
T Consensus 239 pv~~~~~C~la~vP~~aVv~r~~~~------~~v~~~L~~~q~~fg~~~~~~~~~F~lF~s~~kdLLFkD~t~~L~~~~~ 312 (335)
T 3tod_A 239 PVTEAQSCHLAVAPNHAVVSRSDRA------AHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGG 312 (335)
T ss_dssp EGGGGGGSCSEEECCCEEEECHHHH------HHHHHHHHHHHHHHSTTCTTTTTTCCTTCSTTSCCSSCTTEEEEECCTT
T ss_pred CCCCCCcceEEEccCCEEEECCCcH------HHHHHHHHHHHHHhCcCCCCCCCCccccCCCCCcccccccccCcccCCC
Confidence 3567789999999999999999643 557788888765 4321 122221 4999999999975 4455
Q ss_pred CCChhhhhccccchhhhccCC
Q psy11925 73 TLHPTQYLQKANYEDVIGRVV 93 (458)
Q Consensus 73 ~~~~~~YLg~a~Y~~ai~~~~ 93 (458)
.++++.||| .+|+++|++++
T Consensus 313 ~~~~~~yLg-~~y~~ai~~l~ 332 (335)
T 3tod_A 313 RPTYEEYLG-TEYVTAIANLK 332 (335)
T ss_dssp CCCHHHHHC-HHHHHHHHHHH
T ss_pred CCCHHHHhh-HHHHHHHHHHh
Confidence 789999999 68999998654
No 18
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E
Probab=99.21 E-value=3.1e-12 Score=129.45 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=64.2
Q ss_pred CCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-cCCC-----CCcccc---ccceeeecccccc-cCCCC
Q psy11925 4 LQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-LGES-----SGNDWL---INVLGIDSNSTAV-DNKKT 73 (458)
Q Consensus 4 ~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~g~~-----sS~~~~---~k~LlF~Dst~~v-~~~~~ 73 (458)
++.+++||||++||||||+|++.+ +.|+++|.++|+ ||.. +.+.+. .+||||+|+|+.| .++..
T Consensus 234 v~~~~~C~la~vP~~aVv~r~~~~------~~i~~~L~~~q~~fg~~~~~~~~~F~lF~s~~kdLLFkDst~~L~~~~~~ 307 (342)
T 3skp_A 234 VEEYANCHLARAPNHAVVTRKDKE------ACVHKILRQQQHLFGSNVTDCSGNFCLFRSETKDLLFRDDTVCLAKLHDR 307 (342)
T ss_dssp GGGGGGSCSEEECCCEEEECGGGH------HHHHHHHHHHHHHHSTTCSCCSSSCCTTCCSSSCSSSCTTCCEEEECSTT
T ss_pred CCCCccceEEEccCCeEEecCchH------HHHHHHHHHHHHHhCcCCCCCCCCccccCCCCCCcceecCccCcccCCCC
Confidence 566789999999999999999743 668888988876 4431 122221 4999999999975 45557
Q ss_pred CChhhhhccccchhhhccCC
Q psy11925 74 LHPTQYLQKANYEDVIGRVV 93 (458)
Q Consensus 74 ~~~~~YLg~a~Y~~ai~~~~ 93 (458)
++++.||| .+|+++|++++
T Consensus 308 ~~~~~~Lg-~~y~~~~~~l~ 326 (342)
T 3skp_A 308 NTYEKYLG-EEYVKAVGNLR 326 (342)
T ss_dssp CSHHHHSC-HHHHHHHHHHH
T ss_pred CCHHHHhh-HHHHHHHHHhh
Confidence 89999999 68999998654
No 19
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=99.20 E-value=5.7e-12 Score=127.57 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=59.8
Q ss_pred CCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-c--------CCCCCccccccceeeecccccc-cCCCC
Q psy11925 4 LQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-L--------GESSGNDWLINVLGIDSNSTAV-DNKKT 73 (458)
Q Consensus 4 ~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~--------g~~sS~~~~~k~LlF~Dst~~v-~~~~~ 73 (458)
++++++|||+++|||+||+|++.. ..++|++.|.++++ | .+|+|+.|+ +||||+|+|..| +.+..
T Consensus 240 v~~~~~C~la~vP~~avv~r~~~~----~~~~i~~~l~~~~~~fg~~~~~~f~lF~s~~~~-k~LlFkD~t~~l~~~~~~ 314 (334)
T 1h45_A 240 VDKFKDCHLARVPSHAVVARSVNG----KEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQ-KDLLFKDSAIGFSRVPPR 314 (334)
T ss_dssp GGGGGGSCSEEEECCEEEEESSSC----CHHHHHHHHHHHHHHHSTTTCSSCCTTCCCTTC-CCSSSCTTCCEEEECCTT
T ss_pred cCCCccceecccCCceEEEcCCCC----hHHHHHHHHHHHHHHhccCCCcccCccCCCccC-CCCcccCCCcceeeCCCC
Confidence 456789999999999999999754 25678999998884 3 345677765 999999999975 35556
Q ss_pred CChhhhhccccchhhhccCC
Q psy11925 74 LHPTQYLQKANYEDVIGRVV 93 (458)
Q Consensus 74 ~~~~~YLg~a~Y~~ai~~~~ 93 (458)
++++.||| .+|+++|++++
T Consensus 315 ~~~~~yLg-~~y~~~~~~l~ 333 (334)
T 1h45_A 315 IDSGLYLG-SGYFTAIQNLR 333 (334)
T ss_dssp CCHHHHHT-C----------
T ss_pred CCHHHHhC-HHHHHHHHHhc
Confidence 89999999 78999998764
No 20
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=99.14 E-value=1.2e-11 Score=124.84 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=66.6
Q ss_pred CCCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-c--------CCCCCccccccceeeecccccc-cCCC
Q psy11925 3 LLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-L--------GESSGNDWLINVLGIDSNSTAV-DNKK 72 (458)
Q Consensus 3 ~~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~--------g~~sS~~~~~k~LlF~Dst~~v-~~~~ 72 (458)
.+..+++|||+++|||+||+|++.. . .++|++.|.++++ | .+|+|+.+ |||||+|+|..| ..++
T Consensus 234 pi~~~~~C~l~~~P~~~vv~r~~~~---~-~~~i~~~l~~~~~~fg~~~~~~F~lF~s~~~--knllF~D~t~~l~~~~~ 307 (327)
T 1ryo_A 234 PVDEYKDCHLAQVPSHTVVARSMGG---K-EDLIWELLNQAQEHFGKDKSKEFQLFSSPHG--KDLLFKDSAHGFLKVPP 307 (327)
T ss_dssp EGGGGGGSCSEEEECCEEEECSSSC---C-HHHHHHHHHHHHHHHSTTTCSSCCTTCCTTC--SSSSSCTTEEEEEECCT
T ss_pred CCCCCCcceeccCCCceEEEeCCCC---H-HHHHHHHHHHHHHHhCcCCCCceeeeCCCCC--CCCCEecCcccceeCCC
Confidence 3556789999999999999998754 2 4678999998885 3 34566654 999999999975 4555
Q ss_pred CCChhhhhccccchhhhccC
Q psy11925 73 TLHPTQYLQKANYEDVIGRV 92 (458)
Q Consensus 73 ~~~~~~YLg~a~Y~~ai~~~ 92 (458)
.++++.||| .+|+.+|+++
T Consensus 308 ~~~~~~~lg-~~y~~~~~~l 326 (327)
T 1ryo_A 308 RMDAKMYLG-YEYVTAIRNL 326 (327)
T ss_dssp TCCHHHHHC-HHHHHHHHHH
T ss_pred CCCHHHHcC-HHHHHHHHhc
Confidence 789999999 6899999864
No 21
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=99.08 E-value=3.6e-10 Score=113.30 Aligned_cols=187 Identities=15% Similarity=0.143 Sum_probs=135.5
Q ss_pred CCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcce-EEEEEEecCCCccChhhh----
Q psy11925 125 RPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDL-LAVAVVNKNSKVKSLEEL---- 199 (458)
Q Consensus 125 ~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~-~aVAVVkk~s~~~~l~dL---- 199 (458)
+.+++-+...+..+.++++..|++|++.+.+..+..+.+..+.+|++.-....+... +++.||++++++++++||
T Consensus 45 G~~ve~~~~~~~~~~i~aL~~G~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds~i~sl~DL~~~~ 124 (321)
T 3p7i_A 45 GVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKR 124 (321)
T ss_dssp TSCEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTCSCCSHHHHHHTG
T ss_pred CCCEEEEecCCHHHHHHHHHcCCCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCCCCCCHHHHHhhc
Confidence 457888888899999999999999999988777666654568888775543233333 678999999999999999
Q ss_pred cCCceeeCCCCCCCchHHHHHHH-HHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-h
Q psy11925 200 KGLKSCHTAYMRTTGWVAPVYNL-LEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-P 277 (458)
Q Consensus 200 kGkksChtg~~~taGw~~Pv~~L-~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A 277 (458)
|||+......++++|+.+|...| .+.|+-+ .+ |. .. .-| ++. +
T Consensus 125 kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~----------~~-~~-~v-~~~----------------------~~~~a 169 (321)
T 3p7i_A 125 KDLTFGNGDPNSTSGFLVPGYYVFAKNNISA----------SD-FK-RT-VNA----------------------GHETN 169 (321)
T ss_dssp GGCEEEECCTTCTTTTHHHHHHTTGGGTCCG----------GG-SS-EE-EEC----------------------CHHHH
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHHcCCCh----------hH-ce-ee-ecC----------------------CHHHH
Confidence 99999988888999999998755 4456321 11 21 10 000 355 9
Q ss_pred hhhcccCCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCccccccccCCce
Q psy11925 278 LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHM 357 (458)
Q Consensus 278 ~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~a 357 (458)
+..|..|..|++|+...++..+.. .+. ....+++ +|... ...|...
T Consensus 170 ~~al~~G~vDa~~~~~~~~~~~~~------~~p------------~~~~~lr--vl~~s--------------~~~p~~~ 215 (321)
T 3p7i_A 170 ALAVANKQVDVATNNTENLDKLKT------SAP------------EKLKELK--VIWKS--------------PLIPGDP 215 (321)
T ss_dssp HHHHHTTSSSEEEEEHHHHHTHHH------HCH------------HHHTTEE--EEEEC--------------SCBCCCE
T ss_pred HHHHHCCCceEEEechHHHHHHHH------hCc------------chhccEE--EEEEc--------------CCCCCCc
Confidence 999999999999999877765421 000 0123566 65311 3478889
Q ss_pred EEEcCCCChhHHHHHHHHHHHHH
Q psy11925 358 VVTSNSKSNVEIDTIRHAILSAA 380 (458)
Q Consensus 358 Vv~r~~~~~~~~~~i~~~l~~~~ 380 (458)
|+++++.++..+++|..+|.++.
T Consensus 216 i~~~k~~~~~l~~~l~~aL~~~~ 238 (321)
T 3p7i_A 216 IVWRKNLSETTKDKIYDFFMNYG 238 (321)
T ss_dssp EEEETTSCHHHHHHHHHHHHHTT
T ss_pred eeeeCCCCHHHHHHHHHHHHhcC
Confidence 99999988888889999988753
No 22
>2j4u_S Lactotransferrin, lactoferrin; membrane protein/hydrolase, membrane protein/hydrolase complex, iron, OMPC, porin, complex, protease; 2.99A {Camelus dromedarius}
Probab=99.03 E-value=2.7e-12 Score=92.72 Aligned_cols=44 Identities=27% Similarity=0.663 Sum_probs=39.2
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHH
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVC 139 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~C 139 (458)
|.++|||||+|+.|+.||++|+.++ ++.++|.|+|++++|+++|
T Consensus 2 p~~~vrWCt~S~~E~~KC~~l~~~~-~~~~~P~l~Cv~~~s~~eC 45 (45)
T 2j4u_S 2 SKKSVRWCTTSPAESKKCAQWQRRM-KKVRGPSVTCVKKTSRFEC 45 (45)
T ss_dssp CSSSBCCCCCSSGGGSSCCSTTBTT-BSSCCSCBCCCCCSSSSCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHH-HhcCCCCeEEeCCCCcCCC
Confidence 4567999999999999999999876 5557899999999999887
No 23
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.96 E-value=1.1e-09 Score=108.82 Aligned_cols=186 Identities=14% Similarity=0.142 Sum_probs=133.0
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcce-EEEEEEecCCCccChhhh----c
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDL-LAVAVVNKNSKVKSLEEL----K 200 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~-~aVAVVkk~s~~~~l~dL----k 200 (458)
-+++-+...+..+.++++..|++|++.+.+..+..+.+..+.+++..-....+... .++.||++++++++++|| |
T Consensus 36 ~~ve~~~~~~~~~~i~al~~G~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~i~sl~DL~~~~k 115 (310)
T 3n5l_A 36 YQVKAFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAK 115 (310)
T ss_dssp SEEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGG
T ss_pred CCEEEEeCCCHHHHHHHHHcCCCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCCCCCHHHHhhhcC
Confidence 45776777899999999999999999988777666654567787765433223334 678899999999999999 9
Q ss_pred CCceeeCCCCCCCchHHHHHHHH-HcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hh
Q psy11925 201 GLKSCHTAYMRTTGWVAPVYNLL-EKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PL 278 (458)
Q Consensus 201 GkksChtg~~~taGw~~Pv~~L~-~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~ 278 (458)
||+...+..++++|+.+|...|+ +.|+ ...++|. .. ..| ++. ++
T Consensus 116 gk~ia~~~~gs~~~~l~~~~~l~~~~Gi----------~~~~~~~-~v-~~g----------------------~~~~~~ 161 (310)
T 3n5l_A 116 SLTFGNGDPNSTSGYLVPGYYVFAKNNV----------DPVKAFK-RT-LNS----------------------SHEVNA 161 (310)
T ss_dssp GCEEEECCTTCTTTTHHHHHHTTTTTTC----------CHHHHSS-EE-EEC----------------------CHHHHH
T ss_pred CCEEEecCCCccHhHHHHHHHHHHHcCC----------ChHHhcc-cc-ccC----------------------CHHHHH
Confidence 99999988888999999876553 3342 1123332 11 111 355 89
Q ss_pred hhcccCCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceE
Q psy11925 279 QCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMV 358 (458)
Q Consensus 279 rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aV 358 (458)
.-|..|..|++|+...++..+.. .|. ....+++ +|... ...|..++
T Consensus 162 ~al~~G~vDa~~~~~~~~~~~~~------~~~------------~~~~~lr--vl~~s--------------~~~p~~~i 207 (310)
T 3n5l_A 162 LAVANKQVDVATFNTEGMERLEL------TQP------------EKARQLK--VIWKS--------------PLIPGDPL 207 (310)
T ss_dssp HHHHTTSSSEEEEEHHHHHHHHH------HCH------------HHHTTEE--EEEEE--------------EEEECCEE
T ss_pred HHHHcCCccEEEecchhHHHHHH------hCc------------cchhCEE--EEEEC--------------CCCCCCcE
Confidence 99999999999999887776521 010 0113466 55321 34688899
Q ss_pred EEcCCCChhHHHHHHHHHHHH
Q psy11925 359 VTSNSKSNVEIDTIRHAILSA 379 (458)
Q Consensus 359 v~r~~~~~~~~~~i~~~l~~~ 379 (458)
+++++.+...+++|..+|.++
T Consensus 208 ~~~~~~~~~l~~~l~~al~~~ 228 (310)
T 3n5l_A 208 VWRNNLSDEQKNKLRDFFFKY 228 (310)
T ss_dssp EEETTSCHHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHHHHhc
Confidence 999998888888888888875
No 24
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.81 E-value=0.00013 Score=71.60 Aligned_cols=131 Identities=11% Similarity=0.049 Sum_probs=86.8
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksC 205 (458)
.++-+...+..+.++++..|++|++......+..+. +...++.+....+.. ...+.||++++++++++||||||..
T Consensus 59 ~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~---~~~~lvv~~~s~I~s~~DLkGk~i~ 135 (324)
T 3ksx_A 59 KITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTP---KAETILVPSKSALRTVADLKGKRIA 135 (324)
T ss_dssp EEEEEEESSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCG---GGEEEEEETTCSCCSGGGGTTCEEE
T ss_pred ceEEEECCCHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCC---CceEEEEeCCCCCCCHHHhCCCEEE
Confidence 567666678889999999999999987665544432 334566655433221 1456678999999999999999999
Q ss_pred eCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSG 284 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg 284 (458)
-+ .++ .+..+....|.+.|+-+ . .+ ++.. . +.. ++..|.+|
T Consensus 136 v~-~gs-~~~~~~~~~l~~~Gl~~-~------~v-~~v~----~------------------------~~~~~~~al~~G 177 (324)
T 3ksx_A 136 FQ-KGS-SAHNLLLRVLAKSGLSM-R------DI-TPLY----L------------------------SPANARAAFAAG 177 (324)
T ss_dssp EC-TTS-HHHHHHHHHHHHTTCCG-G------GS-EEEE----C------------------------CHHHHHHHHHTT
T ss_pred ec-CCC-hHHHHHHHHHHHcCCCH-H------He-EEEe----C------------------------CHHHHHHHHHcC
Confidence 87 443 34444445666666422 1 11 1111 0 133 78899999
Q ss_pred CCcEEEEechhhhh
Q psy11925 285 DGDVAFIKQVKVNK 298 (458)
Q Consensus 285 ~GDVAFvk~~tv~~ 298 (458)
..|++++.......
T Consensus 178 ~vDa~~~~~p~~~~ 191 (324)
T 3ksx_A 178 QVDAWAIWDPWYSA 191 (324)
T ss_dssp CCSEEEEETTHHHH
T ss_pred CCCEEEEccHHHHH
Confidence 99999987765543
No 25
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.54 E-value=0.0006 Score=66.35 Aligned_cols=192 Identities=18% Similarity=0.169 Sum_probs=113.8
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEEeecCCcceEEEEEEecCC--CccChhhhcCC
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNS--KVKSLEELKGL 202 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E~y~~~~~~~aVAVVkk~s--~~~~l~dLkGk 202 (458)
..++-+...+..+.++++.+|++|++......+..+. +..+++.+..- +.. ...+.+|++++ ++++++||+||
T Consensus 64 ~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~v~~~~~~~i~s~~DL~Gk 139 (346)
T 3qsl_A 64 LDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQ-GRA---PMIGVGVSKKNLPGYKGPADLKGR 139 (346)
T ss_dssp CEEEEEECSSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEES-BSS---CCEEEEEETTTCTTCCSGGGGTTC
T ss_pred CeEEEEecCChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEec-ccC---CCcEEEEecCcccCCCChHHcCCC
Confidence 3566677788899999999999999988776654442 33455555432 211 13455778877 89999999999
Q ss_pred ceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhc
Q psy11925 203 KSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCL 281 (458)
Q Consensus 203 ksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL 281 (458)
|...++.+++ ...+....|.+.|+-+ . .+ ++-. .+ +.. ++..|
T Consensus 140 ~i~~~~~gs~-~~~~~~~~l~~~G~~~-~------~v-~~~~----~~-----------------------~~~~~~~al 183 (346)
T 3qsl_A 140 KIGVTAPGSS-TNMVVNFFLAKHGLKA-S------DV-SFIG----VG-----------------------AGAGAVTAL 183 (346)
T ss_dssp EEEESSTTSH-HHHHHHHHHHHTTCCG-G------GS-EEEE----CC-----------------------SSHHHHHHH
T ss_pred EEEECCCCcH-HHHHHHHHHHHcCCCH-H------He-EEEe----cC-----------------------CcHHHHHHH
Confidence 9999887654 3333344555556422 1 11 1110 11 122 78889
Q ss_pred ccCCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCccccc-cccCCceEEE
Q psy11925 282 KSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNL-GVVPPHMVVT 360 (458)
Q Consensus 282 ~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l-~~vP~~aVv~ 360 (458)
.+|..|++++....+..... ....+ +|...+. +..+.. .+ +..|...+++
T Consensus 184 ~~G~vDa~~~~~p~~~~~~~-----------------------~g~~~--~~~~~~~---~~~~~~-~~g~~~~~~~~~~ 234 (346)
T 3qsl_A 184 RSGQIDAISNTDPVVSMLET-----------------------SGDIQ--IIVDTRT---LKDTKE-IFGGNMPAGCLYA 234 (346)
T ss_dssp HHTSCSEEEEETTHHHHHHH-----------------------TTCEE--EEEECSS---HHHHHH-HHSSCCCCEEEEE
T ss_pred HcCCccEEEecchhHHHHHh-----------------------CCCeE--EEEeccc---ccchhh-hcCCCCceEEEEE
Confidence 99999999998776654311 11233 3322110 000000 01 2467788888
Q ss_pred cCCC---ChhHHHHHHHHHHHHHHHhcCC
Q psy11925 361 SNSK---SNVEIDTIRHAILSAADLFSKK 386 (458)
Q Consensus 361 r~~~---~~~~~~~i~~~l~~~~~~fg~~ 386 (458)
|++. .++..+++..++.+..++.-.+
T Consensus 235 ~~~~~~~~p~~~~~~~~a~~~a~~~~~~~ 263 (346)
T 3qsl_A 235 PQAFVDANPNTAQALTNAIVRADKWIQKA 263 (346)
T ss_dssp EHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHCHHHHHHHHHHHHHHHHHHHhC
Confidence 8763 4455567777777666655433
No 26
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.47 E-value=0.00055 Score=66.11 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=65.8
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksC 205 (458)
.++-+...+..+.++++.+|++|++......++.+. +...++.+.. .+... ..+.||++++++++++||||||.+
T Consensus 35 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~---~~~l~~~~~s~i~s~~DL~Gk~i~ 110 (302)
T 3ix1_A 35 DVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVAS-VVRSP---LNHVMFLAEQDFDSPADLVGLTVG 110 (302)
T ss_dssp EEEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEE-EECSC---CEEEEEEGGGCCSSGGGGTTSEEE
T ss_pred cEEEecCCCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEE-EeccC---CEEEEEECCCCCCChHHcCCCEEE
Confidence 466666666779999999999999998766655553 3334554433 22211 456678889999999999999998
Q ss_pred eCCCCCCCchHHHHHHHHHcCC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGL 227 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~ 227 (458)
.++.+ ++..+....|.+.|+
T Consensus 111 ~~~~~--~~~~~~~~~l~~~Gl 130 (302)
T 3ix1_A 111 YPGIP--VNEPILKTMVEAAGG 130 (302)
T ss_dssp ECSCT--THHHHHHHHHHHTTC
T ss_pred eCCCc--chHHHHHHHHHHcCC
Confidence 87653 455555556666664
No 27
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.43 E-value=0.00094 Score=66.18 Aligned_cols=127 Identities=20% Similarity=0.076 Sum_probs=80.8
Q ss_pred CeEE--EecC-CHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCC
Q psy11925 127 PFEC--NREK-SSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGL 202 (458)
Q Consensus 127 ~v~C--v~~~-s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGk 202 (458)
.++- +... +..+.++++..|++|++.........+. +..+++.+.. .+.. ...+.||++++++++++|||||
T Consensus 45 ~v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~-~~~~---~~~~lvv~~~s~i~s~~DLkGk 120 (348)
T 3uif_A 45 KVEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAP-WGTT---SNSYLVVPKNSTAKSIKDLKGK 120 (348)
T ss_dssp EEEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEE-CCCC---CCCEEEEETTCCCCSGGGGTTS
T ss_pred eEEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEe-ccCC---CceEEEEECCCCCCCHHHcCCC
Confidence 4555 4443 3677999999999999996665543332 3344554432 2221 1345677889999999999999
Q ss_pred ceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhc
Q psy11925 203 KSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCL 281 (458)
Q Consensus 203 ksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL 281 (458)
|..-+ .+ +.+..+....|.+.|+-+ . .+ ++.. . +.. ++..|
T Consensus 121 ~I~v~-~g-s~~~~~~~~~l~~~Gl~~-~------~v-~~v~----~------------------------~~~~~~~al 162 (348)
T 3uif_A 121 KIALH-RG-RPWELAFSNLLQSEGLTF-K------DF-KIVN----V------------------------NPQVGAAAL 162 (348)
T ss_dssp EEEEC-TT-STHHHHHHHHHHHTTCCG-G------GS-EEEC----C------------------------CHHHHHHHH
T ss_pred EEEec-CC-ChHHHHHHHHHHHcCCCH-H------He-EEEE----C------------------------CHHHHHHHH
Confidence 99885 33 455556566666666421 1 11 1111 0 133 78899
Q ss_pred ccCCCcEEEEechh
Q psy11925 282 KSGDGDVAFIKQVK 295 (458)
Q Consensus 282 ~eg~GDVAFvk~~t 295 (458)
.+|..|++++....
T Consensus 163 ~~G~vDa~~~~~~~ 176 (348)
T 3uif_A 163 ASGTVDGFFSLFDS 176 (348)
T ss_dssp HHTSSSEEEESTTH
T ss_pred HcCCCCEEEechHH
Confidence 99999999886543
No 28
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.39 E-value=0.00038 Score=68.85 Aligned_cols=132 Identities=8% Similarity=-0.057 Sum_probs=89.0
Q ss_pred CCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEEeecCCcceEEEEEEecCCCccChhhh-cCC
Q psy11925 125 RPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEEL-KGL 202 (458)
Q Consensus 125 ~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dL-kGk 202 (458)
+-.++-+...+..+.++++.+|++|++.......+.+. +..+++.|... + ....+.||++++++++++|| |||
T Consensus 81 G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~-~----~~~~~ivv~~~s~I~s~~DL~kGk 155 (341)
T 3un6_A 81 KYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALG-H----HEGNVIMGQKGMHLNEFNNNGDDY 155 (341)
T ss_dssp SSEEEEEECSSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEES-C----EECEEEEESTTCCGGGCCSSSSCE
T ss_pred CCcEEEEEcCCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeec-C----CCceEEEEcCCCCCCCHHHhCCCC
Confidence 34688888888999999999999999988776655442 44566666542 1 11345588999999999999 999
Q ss_pred ceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhc
Q psy11925 203 KSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCL 281 (458)
Q Consensus 203 ksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL 281 (458)
|...+..+++ ...+.-..|.+.|+-+ .+ + ++-. . +.. ++..|
T Consensus 156 ~i~v~~~~s~-~~~~~~~~l~~~Gl~~-~d------v-~~~~----~------------------------~~~~~~~al 198 (341)
T 3un6_A 156 HFGIPHRYST-HYLLLEELRKQLKIKP-GH------F-SYHE----M------------------------SPAEMPAAL 198 (341)
T ss_dssp EEEESCSSSH-HHHHHHHHHHHTTCCT-TS------E-EEEE----C------------------------CGGGHHHHH
T ss_pred EEEECCCCCH-HHHHHHHHHHHcCCCH-HH------e-EEEE----c------------------------ChHHHHHHH
Confidence 9998765433 3334334566667432 11 1 1111 1 122 77889
Q ss_pred ccCCCcEEEEechhhhh
Q psy11925 282 KSGDGDVAFIKQVKVNK 298 (458)
Q Consensus 282 ~eg~GDVAFvk~~tv~~ 298 (458)
.+|..|++++.......
T Consensus 199 ~~G~vDa~~~~~p~~~~ 215 (341)
T 3un6_A 199 SEHRITGYSVAEPFGAL 215 (341)
T ss_dssp HTTSCSEEEEETTHHHH
T ss_pred HcCCCCEEEecCCHHHH
Confidence 99999999987765443
No 29
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=97.33 E-value=0.00092 Score=66.54 Aligned_cols=228 Identities=18% Similarity=0.090 Sum_probs=125.2
Q ss_pred CCCceEEEeCChh------HHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec------
Q psy11925 95 PIKPIRWCVSSPE------GMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR------ 162 (458)
Q Consensus 95 p~~~vrwCv~s~~------E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~------ 162 (458)
+.++||+.+.+.. -..-++.|.+... ...+-+++-+......+-+.++.+|++|++......++.+.
T Consensus 30 ~~~~i~i~~g~~gG~~~~~~~~la~~l~~~~~-~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f 108 (327)
T 4ddd_A 30 NREYILIGTGSMTGVYYPIGGSICRFIASDYG-KDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFY 108 (327)
T ss_dssp CCEEEEEECCCTTSSHHHHHHHHHHHHHHHHG-GGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGG
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccC-CCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcc
Confidence 4567999987642 1223334433200 00122344445557889999999999999987765433221
Q ss_pred ----cCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHH-HcCCCCCCCCcccc
Q psy11925 163 ----KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLL-EKGLIKKDSCPYYK 237 (458)
Q Consensus 163 ----~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~-~~~~i~~~~c~~~~ 237 (458)
..-+++||..- +. ...+.||++++++++++||+|||.+....++ |-.+-+..++ ..|+-
T Consensus 109 ~~~~~~~d~~~v~~~-~~----~~~~lvv~~ds~i~sl~DL~gk~v~~~~~Gs--~~~~~~~~~l~~~Gi~--------- 172 (327)
T 4ddd_A 109 EKMLPMDNLRMLASL-HK----EYLTIVVKKSSNISVIDDIKGKRVNIGSPGT--GVRVAMLKLLGEKGWT--------- 172 (327)
T ss_dssp TTSCCCTTEEEEEEE-EE----EEEEEEEETTSSCCSGGGGTTSEEECCSTTS--HHHHHHHHHHHHHTCC---------
T ss_pred cccCCCcchhehhcc-CC----ccEEEEEECCCCCCCHHHhCCCEEecCCCCc--cHHHHHHHHHHHcCCC---------
Confidence 11246666432 21 1567789999999999999999998765543 3233333333 33531
Q ss_pred ccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCCCcEEEEech----hhhhhhhcc---cccccc
Q psy11925 238 GVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQV----KVNKAIEEG---LFKTDE 309 (458)
Q Consensus 238 ~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~GDVAFvk~~----tv~~~~~~~---~~~~~g 309 (458)
..++-. +|-. |.. |+.-|.+|..|++|.... .+.+....+ +....+
T Consensus 173 -~~~v~~----v~~~---------------------g~~~a~~aL~~G~vDa~~~~~~~p~~~~~~~~~~g~lr~L~v~~ 226 (327)
T 4ddd_A 173 -KKDFSV----MAEL---------------------KSSEQAQALCDNKIDVMVDVIGHPNASIQEASATCDIKFIPLDD 226 (327)
T ss_dssp -GGGCSE----EECC---------------------CHHHHHHHHHTTSCSBEEEEECSSCHHHHHHHHHSCEEECCCCH
T ss_pred -hHhcch----hhcC---------------------CHHHHHHHHHcCCCCEEEEccCCCcHHHHHHHhcCCeEEEeCCH
Confidence 111100 1100 455 999999999999998543 355543211 111111
Q ss_pred hhhhccCCCCCCCCCCCCcccccccCCC-Cccc--c--ccCcccccc----ccCCceEEEcCCCChhHHHHHHHHHHHHH
Q psy11925 310 IEYLCSKGGRAPVSKAGDYEIEYLCSKG-GRAP--V--SKAADCNLG----VVPPHMVVTSNSKSNVEIDTIRHAILSAA 380 (458)
Q Consensus 310 ~~~~~~~~~wa~~~~~~dy~~~LLCpdg-~r~~--v--~~~~~C~l~----~vP~~aVv~r~~~~~~~~~~i~~~l~~~~ 380 (458)
.+ -. -+-|+- +..+ | ..|. .+. ...+..++++++.+++...++..+|.+-.
T Consensus 227 ~~----------------r~--~~~p~~Pt~~~~~ip~g~~~--~~~dv~t~~~~~~l~ap~~~p~~vv~~l~~a~~e~~ 286 (327)
T 4ddd_A 227 RL----------------ID--DLHAKYPYYQKDIISGGLYN--DSPDIQTVSVKASLVTTTELSNDLAYKIVKSIATHL 286 (327)
T ss_dssp HH----------------HH--HHHHHCTTCEEEEECSCSSS--SCCCEEEEEEEEEEEEETTSCHHHHHHHHHHHHHTH
T ss_pred HH----------------HH--HHHHhCCCceEEEeCCCCCC--CCCCcceeeeeeEEEEcCCCCHHHHHHHHHHHHhCH
Confidence 00 00 000110 0000 0 0121 111 33477899999999988888888887655
Q ss_pred HHhcC
Q psy11925 381 DLFSK 385 (458)
Q Consensus 381 ~~fg~ 385 (458)
+.|..
T Consensus 287 ~~l~~ 291 (327)
T 4ddd_A 287 RELRS 291 (327)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55543
No 30
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=97.16 E-value=0.0015 Score=63.05 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=76.5
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEe--cc---C------CCceEEEEEeecCCcceEEEEEEecCCCccC
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLG--RK---N------LNLRPILKEKYGNEKDLLAVAVVNKNSKVKS 195 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A--~~---~------~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~ 195 (458)
+++-+...+..+.++++.+|++|++.......+.+ ++ . -+++++.. .+. ...+.||++++++++
T Consensus 51 ~v~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~----~~~~lvv~~~~~i~s 125 (314)
T 1us5_A 51 RANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAA-LYP----EVVHVVARKDAGIRT 125 (314)
T ss_dssp EEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEE-EEE----EEEEEEEETTSSCSS
T ss_pred eEEEEecCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhh-cCc----ceEEEEEECCCCCCc
Confidence 34444445788999999999999987654432211 01 1 34666532 111 156778899999999
Q ss_pred hhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCcccccccc-ccccCcccCCCCccccCCCchhhhhCCCCCCCC
Q psy11925 196 LEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAE-FFTGGSCVPGIDEEEKDAPASLEKICPKATRVT 274 (458)
Q Consensus 196 l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~-FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CG 274 (458)
++||+||+......+++ .+.+-...+...|+-. ..+.+ .+. |
T Consensus 126 l~dL~g~~i~~~~~gs~-~~~~~~~~l~~~G~~~-------~~v~~~~~~-----------------------------~ 168 (314)
T 1us5_A 126 VADLKGKRVVVGDVGSG-TEQNARQILEAYGLTF-------DDLGQAIRV-----------------------------S 168 (314)
T ss_dssp GGGGTTSEEECCCTTCH-HHHHHHHHHHHTTCCG-------GGSSEEECC-----------------------------C
T ss_pred HHHhCCCEeecCCCCch-HHHHHHHHHHHcCCCH-------HHcCceecC-----------------------------C
Confidence 99999999987665532 2333333344445311 01100 010 3
Q ss_pred hh-hhhhcccCCCcEEEEec
Q psy11925 275 YT-PLQCLKSGDGDVAFIKQ 293 (458)
Q Consensus 275 y~-A~rCL~eg~GDVAFvk~ 293 (458)
.. ++.-|..|..|++|...
T Consensus 169 ~~~~~~al~~G~vda~~~~~ 188 (314)
T 1us5_A 169 ASQGIQLMQDKRADALFYTV 188 (314)
T ss_dssp HHHHHHHHHTTSCSEEEEEE
T ss_pred HHHHHHHHHcCCccEEEEcc
Confidence 45 88899999999999763
No 31
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.00 E-value=0.003 Score=60.77 Aligned_cols=131 Identities=16% Similarity=0.111 Sum_probs=82.9
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksC 205 (458)
.++-+...+..+.++++.+|++|++.........+. +..+++.+....+.. ...+.||++++++.+++||+|||..
T Consensus 33 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~lv~~~~~~i~s~~dL~Gk~i~ 109 (308)
T 2x26_A 33 KISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKP---KAEVILVAENSPIKTVADLKGHKVA 109 (308)
T ss_dssp EEEEEECSSHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCG---GGEEEEEETTCSCCSGGGGTTSEEE
T ss_pred ceEEEECCCcHHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCC---CceEEEEeCCCCCCCHHHcCCCEEe
Confidence 566667677679999999999999987654332221 224455555543321 1456778889999999999999998
Q ss_pred eCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSG 284 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg 284 (458)
.+ .++ ....+-...|.+.|+-+ . .+ ++-. . +.. ++..|..|
T Consensus 110 ~~-~gs-~~~~~l~~~l~~~Gl~~-~------~v-~~~~----~------------------------~~~~~~~al~~G 151 (308)
T 2x26_A 110 FQ-KGS-SSHNLLLRALRQAGLKF-T------DI-QPTY----L------------------------TPADARAAFQQG 151 (308)
T ss_dssp EC-TTS-HHHHHHHHHHHHTTCCG-G------GS-EEEE----C------------------------CHHHHHHHHHTT
T ss_pred ee-CCC-cHHHHHHHHHHHcCCCH-H------He-EEEe----c------------------------ChHHHHHHHHcC
Confidence 85 333 33333334455556421 0 11 0100 0 233 78899999
Q ss_pred CCcEEEEechhhhh
Q psy11925 285 DGDVAFIKQVKVNK 298 (458)
Q Consensus 285 ~GDVAFvk~~tv~~ 298 (458)
..|++++....+..
T Consensus 152 ~vDa~~~~~~~~~~ 165 (308)
T 2x26_A 152 NVDAWAIWDPYYSA 165 (308)
T ss_dssp SSSEEEEETTHHHH
T ss_pred CCCEEEecchhHHH
Confidence 99999987655543
No 32
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=96.75 E-value=0.01 Score=54.16 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=73.0
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEecc--CCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCce
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRK--NLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKS 204 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~--~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkks 204 (458)
+++-+.. +...+++++++|++|++...-. +...+ .+...|++.... ..+.|+++++.+.+++||+||+.
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~~~p~~~~~~------~~~~~~~~~~~i~~~~dL~g~~i 121 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGMS--ITPSRLKEILMIPYYGEEI------KHLVLVFKGENKHPLPLTQYRSV 121 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSBB--CCHHHHTTEEEEEEEEEEE------SEEEEEEESCCSCCCCGGGSSCE
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecCc--CCHHHHhcccceeeeecCC------ceEEEEeCCCCCCCHHHhCCCEE
Confidence 4555555 7899999999999999863211 11111 111144432111 35677888888999999999998
Q ss_pred eeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhccc
Q psy11925 205 CHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKS 283 (458)
Q Consensus 205 Chtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~e 283 (458)
+-. .|+...- .|.+ .+ .- .+ ..|. ++. +++.|..
T Consensus 122 ~v~-----~g~~~~~-~l~~---~~--~~----~~-~~~~-----------------------------~~~~~~~~L~~ 156 (242)
T 3del_B 122 AVQ-----TGTYQEA-YLQS---LS--EV----HI-RSFD-----------------------------STLEVLMEVMH 156 (242)
T ss_dssp EEE-----TTSHHHH-HHHH---ST--TC----CE-EEES-----------------------------SHHHHHHHHHT
T ss_pred EEE-----cCcHHHH-HHHh---CC--Cc----eE-EEEC-----------------------------CHHHHHHHHHc
Confidence 763 2443321 2222 11 00 00 0111 245 9999999
Q ss_pred CCCcEEEEechhhhhh
Q psy11925 284 GDGDVAFIKQVKVNKA 299 (458)
Q Consensus 284 g~GDVAFvk~~tv~~~ 299 (458)
|..|++++...++...
T Consensus 157 g~vDa~~~~~~~~~~~ 172 (242)
T 3del_B 157 GKSPVAVLEPSIAQVV 172 (242)
T ss_dssp TSSSEEEECHHHHHHH
T ss_pred CCCCEEEecHHHHHHH
Confidence 9999999988777654
No 33
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=96.49 E-value=0.029 Score=52.89 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=70.5
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEecc--CCCc-eEEEEEeecCCcceEEEEEEecCCCccChhhhcCCc
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRK--NLNL-RPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLK 203 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~--~~~L-~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkk 203 (458)
.++-+.. +..++++++++|++|++...-. +...+ .+.. .|++. ...+.||++++++.+++||+||+
T Consensus 64 ~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~t~~r~~~~~~s~p~~~--------~~~~l~~~~~~~i~sl~dL~g~~ 132 (287)
T 2vha_A 64 QVKLIPI-TSQNRIPLLQNGTFDFECGSTT--NNVERQKQAAFSDTIFV--------VGTRLLTKKGGDIKDFADLKGKA 132 (287)
T ss_dssp EEEEEEC-CTTTHHHHHHTTSCSEECSSCB--CCHHHHTTCEEEEEEEE--------EEEEEEEETTSSCCSGGGGTTCE
T ss_pred eEEEEEC-CHHHHHHHHHCCCeeEEecccc--CCcchhhcccccceeee--------cceEEEEECCCCCCCHHHcCCCE
Confidence 3444444 4578999999999999853211 11111 1222 22211 15577889999999999999999
Q ss_pred eeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcc
Q psy11925 204 SCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLK 282 (458)
Q Consensus 204 sChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~ 282 (458)
.+-. .+ .....-+..+...... .- .+ ..|. ++. +++.|.
T Consensus 133 v~~~-~g--~~~~~~l~~~~~~~~~---~~----~~-~~~~-----------------------------~~~~~~~~L~ 172 (287)
T 2vha_A 133 VVVT-SG--TTSEVLLNKLNEEQKM---NM----RI-ISAK-----------------------------DHGDSFRTLE 172 (287)
T ss_dssp EEEE-TT--SHHHHHHHHHHHHTTC---CC----EE-EEES-----------------------------SHHHHHHHHH
T ss_pred EEEe-CC--CcHHHHHHHHhhccCC---Cc----eE-EEcC-----------------------------CHHHHHHHHH
Confidence 8853 12 1222222222221100 00 00 0111 355 999999
Q ss_pred cCCCcEEEEechhhhhh
Q psy11925 283 SGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 283 eg~GDVAFvk~~tv~~~ 299 (458)
.|..|++++....+...
T Consensus 173 ~G~vDa~i~~~~~~~~~ 189 (287)
T 2vha_A 173 SGRAVAFMMDDALLAGE 189 (287)
T ss_dssp TTSCSEEEEEHHHHHHH
T ss_pred cCCeeEEEeChHHHHHH
Confidence 99999999987776654
No 34
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=96.46 E-value=0.014 Score=53.35 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=71.1
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCH 206 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksCh 206 (458)
+++-+.. +..++++++++|++|++...-. +...+.-.+ ....-|.. ...+.+|++++++.+++||+|||.+-
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~--~fs~p~~~---~~~~~~~~~~~~~~~~~dL~g~~i~~ 115 (237)
T 3kzg_A 44 TCTFEAY-IFDDLFPALKNREVDLVIASMI--ITDERKKHF--IFSLPYME---SNSQYITTVDSKISTFDDLHGKKIGV 115 (237)
T ss_dssp EEEEEEE-CGGGHHHHHHTTSSSEECSSCB--CCTTGGGTC--EECCCSBC---CEEEEEEETTCSCCSGGGGTTCEEEE
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEEccc--cChhHhccc--eeeeeeee---cceEEEEECCCCCCCHHHhCCCEEEE
Confidence 3444444 6799999999999998753211 111111111 11111110 15677889998899999999999877
Q ss_pred CCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCC
Q psy11925 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGD 285 (458)
Q Consensus 207 tg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~ 285 (458)
.. |+...- .+.+.. +. . .+ ..+. ++. +++.|.+|.
T Consensus 116 ~~-----g~~~~~-~~~~~~--~~-----~-~~-~~~~-----------------------------~~~~~~~~l~~G~ 151 (237)
T 3kzg_A 116 RK-----GTPYAR-QVLSEN--RN-----N-QV-IFYE-----------------------------LIQDMLLGLSNNQ 151 (237)
T ss_dssp ET-----TSTHHH-HHHHTC--SS-----C-EE-EEES-----------------------------SHHHHHHHHHTTS
T ss_pred ec-----CCHHHH-HHHHhC--CC-----C-cE-EEeC-----------------------------CHHHHHHHHHcCC
Confidence 42 333221 233221 00 0 00 0111 245 999999999
Q ss_pred CcEEEEechhhhhh
Q psy11925 286 GDVAFIKQVKVNKA 299 (458)
Q Consensus 286 GDVAFvk~~tv~~~ 299 (458)
.|++++...++...
T Consensus 152 vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 152 VDASLMDYEAAKYW 165 (237)
T ss_dssp SSEEEEEHHHHHHH
T ss_pred CCEEEeCcHHHHHH
Confidence 99999988777654
No 35
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=96.39 E-value=0.0067 Score=55.32 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=71.3
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEec-CCCccChhhhcCCce
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNK-NSKVKSLEELKGLKS 204 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk-~s~~~~l~dLkGkks 204 (458)
-+++-+.. +...+++++++|++|++...-. +...+.-.+ ....-|. ....+.|+++ ++++.+++||+|||.
T Consensus 47 ~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~--~~s~p~~---~~~~~~~~~~~~~~i~~~~dL~g~~i 118 (246)
T 4eq9_A 47 YDVKFEKT-EWSGVFAGLDADRYNMAVNNLS--YTKERAEKY--LYAAPIA---QNPNVLVVKKDDSSIKSLDDIGGKST 118 (246)
T ss_dssp EEEEEEEC-CHHHHHHHHHTTSCSEECSSCC--CCHHHHHHE--EECCCCE---ECCEEEEEETTCCSCSSGGGCTTCEE
T ss_pred ceEEEEeC-CHHHHHHHHhCCCcCEEecccc--cChhhhhce--eecccee---cCceEEEEECCCCCCCCHHHhCCCEE
Confidence 34555555 8999999999999999863211 111111000 0111010 0145667787 888999999999999
Q ss_pred eeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhccc
Q psy11925 205 CHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKS 283 (458)
Q Consensus 205 Chtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~e 283 (458)
+... ...+..-+..+.+.. +.. .+.-.|. .+ ++. +++.|..
T Consensus 119 ~~~~---g~~~~~~l~~~~~~~--~~~------~~~~~~~----~~-----------------------~~~~~~~~L~~ 160 (246)
T 4eq9_A 119 EVVQ---ATTSAKQLEAYNAEH--TDN------PTILNYT----KA-----------------------DFQQIMVRLSD 160 (246)
T ss_dssp EECT---TCHHHHHHHHHHHHC--TTS------CCEEEEC----CC-----------------------CHHHHHHHHHT
T ss_pred EEec---CccHHHHHHHHHhhC--CCc------ceEEEec----CC-----------------------CHHHHHHHHHc
Confidence 7631 112222222222121 000 0000010 00 245 9999999
Q ss_pred CCCcEEEEechhhhhh
Q psy11925 284 GDGDVAFIKQVKVNKA 299 (458)
Q Consensus 284 g~GDVAFvk~~tv~~~ 299 (458)
|..|++++...++...
T Consensus 161 g~vDa~~~~~~~~~~~ 176 (246)
T 4eq9_A 161 GQFDYKIFDKIGVETV 176 (246)
T ss_dssp TSSSEEEEEHHHHHHH
T ss_pred CCceEEEecHHHHHHH
Confidence 9999999988877654
No 36
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=96.25 E-value=0.042 Score=49.40 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=70.0
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCC-ccChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSK-VKSLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~-~~~l~dLkGkksC 205 (458)
+++-+. .+...+++++.+|++|++. +-.+...+.-.+. ..+-|. ....+.|++++++ +.+++||+||+.+
T Consensus 51 ~~~~~~-~~~~~~~~~l~~g~~D~~~---~~~~~~~r~~~~~--~s~p~~---~~~~~~~~~~~~~~~~~~~dL~g~~i~ 121 (234)
T 3h7m_A 51 TVEFRL-GAWSEMFSALKSGRVDVLQ---GISWSEKRARQID--FTPPHT---IVYHAIFARRDSPPAAGLEDLRGRKVA 121 (234)
T ss_dssp CEEEEE-ECGGGHHHHHHTTSSSEEE---EEECCHHHHTTEE--EEEEEE---EEEEEEEEESSSCCCSSGGGGTTSCEE
T ss_pred ceEEEe-CCHHHHHHHHhCCCeeEEE---eccCCHhHHhhcC--CCcccc---ccceEEEEECCCCCCCCHHHhCCCEEE
Confidence 344443 3789999999999999963 1112221211111 111111 0145677888887 8999999999987
Q ss_pred eCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSG 284 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg 284 (458)
-. .|+... ..|.+.+ .. . .+ ..+. .+. +++.|..|
T Consensus 122 ~~-----~g~~~~-~~l~~~~-~~------~-~~-~~~~-----------------------------~~~~~~~~l~~g 157 (234)
T 3h7m_A 122 LH-----RDGIMH-EYLAERG-YG------K-DL-VLTP-----------------------------TPADALRLLAAG 157 (234)
T ss_dssp EE-----TTSHHH-HHHHTTT-CG------G-GE-EEES-----------------------------SHHHHHHHHHTT
T ss_pred EE-----eCchHH-HHHHhcC-CC------c-eE-EEeC-----------------------------CHHHHHHHHHcC
Confidence 74 344332 2233222 00 0 00 0111 245 99999999
Q ss_pred CCcEEEEechhhhhh
Q psy11925 285 DGDVAFIKQVKVNKA 299 (458)
Q Consensus 285 ~GDVAFvk~~tv~~~ 299 (458)
..|++++....+...
T Consensus 158 ~vDa~~~~~~~~~~~ 172 (234)
T 3h7m_A 158 GCDYAVVAMVPGMYI 172 (234)
T ss_dssp SSSEEEEEHHHHHHH
T ss_pred CceEEEeccHHHHHH
Confidence 999999987766543
No 37
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=96.23 E-value=0.022 Score=52.49 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=71.5
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEecc--CCCceEEEEEeecCCcceEEEEEEecC-CCccChhhhcCCc
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRK--NLNLRPILKEKYGNEKDLLAVAVVNKN-SKVKSLEELKGLK 203 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~--~~~L~pil~E~y~~~~~~~aVAVVkk~-s~~~~l~dLkGkk 203 (458)
+++-+.. +..++++++++|++|++..... +...+ .+...|+... . ...+.+|+++ +.+++++||+|||
T Consensus 71 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~~~p~~~~---~---~~~~~~~~~~~~~i~~~~dL~g~~ 141 (268)
T 3qax_A 71 QLEVREF-AFDALILNLKKHRIDAILAGMS--ITPSRQKEIALLPYYGD---E---VQELMVVSKRSLETPVLPLTQYSS 141 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSSSEECSCCB--CCHHHHTTSEEEEEECC---C---BCEEEEEEETTSCSCCCCGGGSSC
T ss_pred eEEEEec-CHHHHHHHHhCCCccEEeecCc--cCHhHhcceeeecceec---c---cceEEEEECCCCCCCCHHHhCCCE
Confidence 4555555 7899999999999999863221 12212 1222233210 1 1345666776 7899999999999
Q ss_pred eeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcc
Q psy11925 204 SCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLK 282 (458)
Q Consensus 204 sChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~ 282 (458)
.+-. .|+... .++.. .+ .- .+ ..+. ++. +++.|.
T Consensus 142 i~~~-----~g~~~~--~~l~~--~~--~~----~~-~~~~-----------------------------~~~~~~~~l~ 176 (268)
T 3qax_A 142 VAVQ-----TGTYQE--HYLLS--QP--GI----CV-RSFD-----------------------------STLEVIMEVR 176 (268)
T ss_dssp EEEE-----TTSHHH--HHHHT--ST--TC----CE-EEES-----------------------------CHHHHHHHHH
T ss_pred EEEe-----cCcHHH--HHHHh--CC--Cc----eE-EecC-----------------------------CHHHHHHHHH
Confidence 8853 233322 22222 11 00 00 0111 255 999999
Q ss_pred cCCCcEEEEechhhhhh
Q psy11925 283 SGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 283 eg~GDVAFvk~~tv~~~ 299 (458)
.|..|++++....+...
T Consensus 177 ~G~vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 177 YGKSPVAVLEPSVGRVV 193 (268)
T ss_dssp TTSSSEEEECHHHHHHH
T ss_pred cCCCCEEEecHHHHHHH
Confidence 99999999988877764
No 38
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.14 E-value=0.098 Score=51.45 Aligned_cols=213 Identities=15% Similarity=0.106 Sum_probs=119.1
Q ss_pred CCCceEEEeCChh---HHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHH--HHHHcCCcc---EEEeCCcce----EEec
Q psy11925 95 PIKPIRWCVSSPE---GMSKCLAFKDAAFSRDIRPPFECNREKSSKVCL--KLIADGAAD---VITLDATEA----VLGR 162 (458)
Q Consensus 95 p~~~vrwCv~s~~---E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci--~~I~~g~AD---~~~ld~~~~----y~A~ 162 (458)
|.+.||+-|.... --.-.+.|+... +..++-++..........-+ +.+.++.+| ++....+.+ +...
T Consensus 6 P~~pi~~ivp~~~GG~~D~~aR~la~~l-~~~lg~~vvV~n~~Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~ 84 (301)
T 2qpq_A 6 PNKPLDIIVTFPPGGGTDMLARLIGNYL-TESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRN 84 (301)
T ss_dssp CCSCEEEEESSCTTSHHHHHHHHHHHHH-HHGGGSCEEEEECCTGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTT
T ss_pred CCCCEEEEEccCCCcHHHHHHHHHHHHH-HHHhCCCEEEEECCChhHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHhccC
Confidence 6778888776432 112233344322 22234456666665555444 789999999 554433322 1111
Q ss_pred cCC----CceEEEEEeecCCcceEEEEEEecCCCccChhhhcC-------C-ceeeCCCCCCCchHHHHHHHHH-cCCCC
Q psy11925 163 KNL----NLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKG-------L-KSCHTAYMRTTGWVAPVYNLLE-KGLIK 229 (458)
Q Consensus 163 ~~~----~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkG-------k-ksChtg~~~taGw~~Pv~~L~~-~~~i~ 229 (458)
-.| +++||..-. . ...+.||+++++++|++||.+ | +...+|.++ +..+-...|.+ .|+ .
T Consensus 85 ~~yd~~~d~~pv~~~~-~----~~~~lvv~~~s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs--~~hl~~~~l~~~~G~-~ 156 (301)
T 2qpq_A 85 LPFDPKKDFAAVINVA-Y----VPSVFVVPAGSKYKTLGELMAAAKQTNTQVTYGSCGNGT--PQHLAGELLNVSAKT-H 156 (301)
T ss_dssp CSSCTTTTEEEEEEEE-E----EEEEEEEETTCSCCSHHHHHHHTCSSSCCCEEEESSTTS--HHHHHHHHHHHHHTC-C
T ss_pred CCCCchhcchhhhehh-c----CCeEEEEeCCCCCCCHHHHHHHHHhCCCceEEecCCCCc--HHHHHHHHHHHHhCC-C
Confidence 122 567775321 1 167889999999999999964 2 344555543 33343434443 352 1
Q ss_pred CCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCCCcEEEEechhhhhhhhccccccc
Q psy11925 230 KDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTD 308 (458)
Q Consensus 230 ~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~ 308 (458)
. .. +|= . |.. |+.-|..|..|++|.....+..++..
T Consensus 157 ~------~~----------Vpy--------~-------------g~~~a~~al~~G~vD~~~~~~~~~~~~i~~------ 193 (301)
T 2qpq_A 157 M------VH----------VPY--------K-------------GCGPALNDVLGSQIGLAVVTASSAIPFIKA------ 193 (301)
T ss_dssp C------EE----------EEC--------S-------------SHHHHHHHHHTTSSSCEEEEHHHHHHHHHT------
T ss_pred e------EE----------ecc--------C-------------ChHHHHHHHHCCCccEEEEcHHHHHHHHhc------
Confidence 0 00 120 0 455 99999999999999998887776432
Q ss_pred chhhhccCCCCCCCCCCCCcccccccCCCC-cccc-------c--cCccccccccCCceEEEcCCCChhHHHHHHHHHHH
Q psy11925 309 EIEYLCSKGGRAPVSKAGDYEIEYLCSKGG-RAPV-------S--KAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILS 378 (458)
Q Consensus 309 g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~-r~~v-------~--~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~ 378 (458)
| +.+ +|.-.+. |.+. . .|.. +....+.+++++++.+++.++++..+|.+
T Consensus 194 g-----------------~lr--~Lav~~~~r~~~~pdvPt~~e~G~~~--~~~~~w~gl~ap~g~p~~vv~~l~~al~~ 252 (301)
T 2qpq_A 194 G-----------------KLQ--ALAVTSKERSALLPEVPTVAEQGVAG--YELNQWHGLLVPGATPMAVRQKLYDGIAK 252 (301)
T ss_dssp T-----------------SEE--EEEECSSSCCTTCTTSCBSGGGTCTT--CCCEEEEEEEEETTCCHHHHHHHHHHHHH
T ss_pred C-----------------CeE--EEEEcCCccccccCCCCChHHhCCCc--eEEEeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 1 122 2211110 1110 0 0110 12234678999999998888888888877
Q ss_pred HH
Q psy11925 379 AA 380 (458)
Q Consensus 379 ~~ 380 (458)
+.
T Consensus 253 ~~ 254 (301)
T 2qpq_A 253 VM 254 (301)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 39
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.00 E-value=0.1 Score=51.66 Aligned_cols=213 Identities=10% Similarity=0.100 Sum_probs=118.9
Q ss_pred CCCceEEEeCChh---HHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHH--HHHHcCCcc---EEEeCCcc-eEEe---c
Q psy11925 95 PIKPIRWCVSSPE---GMSKCLAFKDAAFSRDIRPPFECNREKSSKVCL--KLIADGAAD---VITLDATE-AVLG---R 162 (458)
Q Consensus 95 p~~~vrwCv~s~~---E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci--~~I~~g~AD---~~~ld~~~-~y~A---~ 162 (458)
|.++||+=|.... --.-.+.++.... ..++-++..........-+ ..+.++.+| ++....+. +..+ .
T Consensus 15 P~kpi~liVp~~~GG~~D~~aR~la~~l~-~~lg~~vvV~N~pGa~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~ 93 (312)
T 2f5x_A 15 PERPVNMVVPFAAGGPTDNVARSLAESMR-PTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKN 93 (312)
T ss_dssp CSSCEEEEESSCTTSHHHHHHHHHHHHHH-HHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSC
T ss_pred CCCCEEEEEeeCCccHHHHHHHHHHHHHH-HHhCCCEEEEecCChHHHHHHHHHHhCCCCCcEEEEecCHHHHHHHHcCC
Confidence 7888999887532 1112334443321 1233456666655444444 778989998 65544332 1111 1
Q ss_pred cCC----CceEEEEEeecCCcceEEEEEEecCCCccChhhhcC-------C-ceeeCCCCCCCchHHHHHHHH-HcCCCC
Q psy11925 163 KNL----NLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKG-------L-KSCHTAYMRTTGWVAPVYNLL-EKGLIK 229 (458)
Q Consensus 163 ~~~----~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkG-------k-ksChtg~~~taGw~~Pv~~L~-~~~~i~ 229 (458)
-.| +++||..-. . ...|.||+++++++|++||.+ | +...+|.+ +.+. +-...|. ..|+ .
T Consensus 94 ~~yd~~~df~pv~~~~-~----~~~~lvv~~ds~~~sl~dL~~~ak~~p~~~~~g~~g~G-s~~h-l~~~~l~~~~Gi-~ 165 (312)
T 2f5x_A 94 PGYEPYTSFEPIGLVV-D----VPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGIG-AASH-LCGTMLVEALGV-N 165 (312)
T ss_dssp CSSCTTTSEEEEEEEE-E----EEEEEEECTTCSCCSHHHHHHHHHHHGGGCEEEESSTT-SHHH-HHHHHHHHHHTC-C
T ss_pred CCCCcccccceeeecc-c----CcEEEEEeCCCCCCCHHHHHHHHHhCCCceEEeCCCCC-cHHH-HHHHHHHHHHCC-C
Confidence 122 567775321 1 177889999999999999974 2 44555555 3333 3333343 3352 1
Q ss_pred CCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCCCcEEEEechhhhhhhhccccccc
Q psy11925 230 KDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTD 308 (458)
Q Consensus 230 ~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~ 308 (458)
. .. +|= . |.. |+.-|..|..|++|.....+..++..|
T Consensus 166 ~------~~----------Vpy--------~-------------G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~g----- 203 (312)
T 2f5x_A 166 L------LT----------IPY--------K-------------GTAPAMNDLLGKQVDLMCDQTTNTTQQITSG----- 203 (312)
T ss_dssp C------EE----------EEC--------S-------------SHHHHHHHHHTTSSCEEEEEHHHHHHHHHTT-----
T ss_pred e------EE----------ecc--------C-------------ChHHHHHHHHcCCccEEEechHHHHHHHHcC-----
Confidence 0 00 220 0 445 999999999999999988877764321
Q ss_pred chhhhccCCCCCCCCCCCCcccccccCCCC-cccc-------c--cCccccccccCCceEEEcCCCChhHHHHHHHHHHH
Q psy11925 309 EIEYLCSKGGRAPVSKAGDYEIEYLCSKGG-RAPV-------S--KAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILS 378 (458)
Q Consensus 309 g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~-r~~v-------~--~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~ 378 (458)
+.+ +|.-.+. |.+. . .|.. +....+.+++++++.+++.++++..+|.+
T Consensus 204 ------------------~lr--~Lav~~~~r~~~~pdvPt~~E~G~~~--~~~~~w~gl~ap~g~p~~vv~~l~~al~~ 261 (312)
T 2f5x_A 204 ------------------KVK--AYAVTSLKRVPTLPDLPTMDESGYKG--FEVGIWHGMWAPKGTPKPVVDKLVKSLQA 261 (312)
T ss_dssp ------------------SSE--EEEECSSSCCTTSTTSCBTTTTTCTT--CCCEEEEEEEEETTCCHHHHHHHHHHHHH
T ss_pred ------------------CeE--EEEEcCccchhhcCCCCCHhhcCCCC--eeEEEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 122 2211110 1110 0 0110 12234678999999998888888888877
Q ss_pred HH
Q psy11925 379 AA 380 (458)
Q Consensus 379 ~~ 380 (458)
+.
T Consensus 262 ~~ 263 (312)
T 2f5x_A 262 GL 263 (312)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 40
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=95.98 E-value=0.0083 Score=56.02 Aligned_cols=125 Identities=19% Similarity=0.146 Sum_probs=72.5
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEEEeecCCcceEEEEEEecCCCccChhhhcCCc
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLK 203 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkk 203 (458)
+++-+.. +...+++++++|++|++... -.+...+.-.+ .|++. ...+.|+++++.+.+++||+|||
T Consensus 61 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~--~~~t~~r~~~~~fs~p~~~--------~~~~~~~~~~~~i~~~~dL~g~~ 129 (268)
T 3hv1_A 61 DVEWQAI-DWDMKETELKNGTIDLIWNG--YSVTDERKQSADFTEPYMV--------NEQVLVTKKSSGIDSVAGMAGKT 129 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSCSEECSS--CBCCHHHHTTCEECCCCEE--------ECEEEEEEGGGCCCSSGGGTTCC
T ss_pred cEEEEEC-CHHHHHHHHHCCCCCEEEec--CccCHHHHhcCcCcHHHee--------CceEEEEECCCCCCCHHHhCCCE
Confidence 4554444 58999999999999988622 11122121111 12211 14567788888899999999999
Q ss_pred eeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcc
Q psy11925 204 SCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLK 282 (458)
Q Consensus 204 sChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~ 282 (458)
.+-. .|+... ..|.+.+-. +...+. +..-. ..+ .+. +++.|.
T Consensus 130 i~v~-----~g~~~~-~~l~~~~~~----------~~~~~~------~~~~~--~~~-------------~~~~~~~~L~ 172 (268)
T 3hv1_A 130 LGAQ-----AGSSGY-DAFNASPKI----------LKDVVA------NQKVV--QYS-------------TFTQALIDLN 172 (268)
T ss_dssp EEEE-----TTCHHH-HHHHHCTTT----------TTTTSG------GGCEE--EES-------------SHHHHHHHHH
T ss_pred EEEE-----eCCchH-HHHHHhhHH----------Hhhhcc------cceEE--EeC-------------CHHHHHHHHH
Confidence 9873 334332 233332210 011110 00000 000 355 999999
Q ss_pred cCCCcEEEEechhhhhh
Q psy11925 283 SGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 283 eg~GDVAFvk~~tv~~~ 299 (458)
.|..|++++...++...
T Consensus 173 ~GrvDa~i~~~~~~~~~ 189 (268)
T 3hv1_A 173 SGRIDGLLIDRVYANYY 189 (268)
T ss_dssp HTSCSEEEEEHHHHHHH
T ss_pred cCCCCEEEeCHHHHHHH
Confidence 99999999988876654
No 41
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=95.85 E-value=0.018 Score=54.99 Aligned_cols=121 Identities=16% Similarity=0.131 Sum_probs=71.1
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCH 206 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksCh 206 (458)
+++-+... ..++++++.+|++|++..... +...+.-.+. + ..-|. ....+.||++++++++++||+|||.+-
T Consensus 98 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~--~~~~r~~~~~-~-~~p~~---~~~~~l~~~~~~~i~sl~dL~gk~v~~ 169 (291)
T 2yjp_A 98 KVEFVLTE-AANRVEYVRSGKVDLILANFT--QTPERAEAVD-F-ADPYM---KVALGVVSPKNKPITDMAQLKDQTLLV 169 (291)
T ss_dssp GEEEEECC-GGGHHHHHHTTSCSEECSSCB--CCHHHHTTEE-E-CCCCE---EECEEEEEETTSCCCSGGGGTTSEEEE
T ss_pred eEEEEEcc-HHHHHHHHhCCCeeEEEeCCC--CChHHHccce-e-ccCee---ecceEEEEeCCCCCCCHHHhCCCEEEE
Confidence 35555544 689999999999999864322 1221211111 1 11110 014567889988999999999999986
Q ss_pred CCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCC
Q psy11925 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGD 285 (458)
Q Consensus 207 tg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~ 285 (458)
. .|+... ..|.+.. + .- .+ ..+. ++. +++.|.+|.
T Consensus 170 ~-----~g~~~~-~~l~~~~--~--~~----~~-~~~~-----------------------------~~~~~~~~l~~G~ 205 (291)
T 2yjp_A 170 N-----KGTTAD-AFFTKSH--P--EV----KL-LKFD-----------------------------QNTETFDALKDGR 205 (291)
T ss_dssp E-----TTSHHH-HHHHHHC--T--TS----EE-EEES-----------------------------SHHHHHHHHHTTS
T ss_pred e-----cCCcHH-HHHHHhC--C--Cc----eE-EEeC-----------------------------CHHHHHHHHHcCC
Confidence 4 223221 2233221 0 00 01 0111 245 899999999
Q ss_pred CcEEEEechhhhhh
Q psy11925 286 GDVAFIKQVKVNKA 299 (458)
Q Consensus 286 GDVAFvk~~tv~~~ 299 (458)
.|++++....+...
T Consensus 206 vDa~~~~~~~~~~~ 219 (291)
T 2yjp_A 206 GVALAHDNALLWAW 219 (291)
T ss_dssp SSEEEEEHHHHHHH
T ss_pred ccEEEecHHHHHHH
Confidence 99999988776654
No 42
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=95.83 E-value=0.044 Score=49.20 Aligned_cols=117 Identities=13% Similarity=0.073 Sum_probs=72.3
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccC--CCc---eEEEEEeecCCcceEEEEEEecCC--CccChhhh
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKN--LNL---RPILKEKYGNEKDLLAVAVVNKNS--KVKSLEEL 199 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~--~~L---~pil~E~y~~~~~~~aVAVVkk~s--~~~~l~dL 199 (458)
+++-+...+..++++++++|++|++..... +...+. -.+ .|++. ...+.|+++++ .+.+++||
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~~~~s~p~~~--------~~~~~~~~~~~~~~i~~~~dL 114 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPIS--VTPERAAIEGITFTQPYFS--------SGIGLLIPGTATPLFRSVGDL 114 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEE--CCHHHHTSTTEEECCCCEE--------EEEEEEEEGGGTTTCSSGGGG
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeee--cCccccccceeEEccceee--------cCeEEEEECCCCCCCCCHHHh
Confidence 566666668999999999999999753211 111111 111 11111 14567778876 78999999
Q ss_pred cCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hh
Q psy11925 200 KGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PL 278 (458)
Q Consensus 200 kGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~ 278 (458)
+|||.+-. .|+... ..|.+.+. .+ ..+. .+. ++
T Consensus 115 ~g~~v~~~-----~g~~~~-~~l~~~~~----------~~-~~~~-----------------------------~~~~~~ 148 (233)
T 1ii5_A 115 KNKEVAVV-----RDTTAV-DWANFYQA----------DV-RETN-----------------------------NLTAAI 148 (233)
T ss_dssp TTCEEEEE-----TTSHHH-HHHHHTTC----------EE-EEES-----------------------------SHHHHH
T ss_pred CCCeEEEE-----CCccHH-HHHHHcCC----------Ce-EEcC-----------------------------CHHHHH
Confidence 99998864 233332 23333221 01 0111 245 99
Q ss_pred hhcccCCCcEEEEechhhhhh
Q psy11925 279 QCLKSGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 279 rCL~eg~GDVAFvk~~tv~~~ 299 (458)
+.|..|..|++++....+...
T Consensus 149 ~~l~~g~vDa~~~~~~~~~~~ 169 (233)
T 1ii5_A 149 TLLQKKQVEAVMFDRPALIYY 169 (233)
T ss_dssp HHHHTTSCSEEEEEHHHHHHH
T ss_pred HHHHcCCccEEEeCHHHHHHH
Confidence 999999999999988776654
No 43
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=95.82 E-value=0.013 Score=57.87 Aligned_cols=95 Identities=9% Similarity=0.074 Sum_probs=61.6
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec-cCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksC 205 (458)
.|+-+...+..+.++++..|++|++..+...+..+. +...++.|..-. .. .. ..+.+++.++.+.+++|||||+..
T Consensus 39 dVei~~~~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~-~~-~~-~~~~~~~~~~~~~~~~dLkGK~ig 115 (342)
T 4esw_A 39 DIAILEPSNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLL-DE-PF-TGICYLEGSGITSDFQSLKGKRIG 115 (342)
T ss_dssp EEEEEEESSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEE-CS-CC-EEEEEETTSSCCSSGGGGTTCEEE
T ss_pred eEEEEeCCChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEec-cC-Cc-ccccccccccccCCHHHhCCCEEE
Confidence 577778888899999999999999998877776664 323344443322 11 11 555555555555679999999998
Q ss_pred eCCCCCCCchHHHHHHHHHcCC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGL 227 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~ 227 (458)
.++ +.+..+-...|.+.|+
T Consensus 116 ~~~---~~~~~~l~~~L~~~Gl 134 (342)
T 4esw_A 116 YVG---EFGKIQVDELTKHYGM 134 (342)
T ss_dssp ESS---SHHHHHHHHHHGGGTC
T ss_pred ecC---CchHHHHHHHHHHcCC
Confidence 753 2233333334444464
No 44
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=95.75 E-value=0.074 Score=47.34 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=69.3
Q ss_pred eEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEEEeecCCcceEEEEEEecCCC-ccChhhhcCCc
Q psy11925 128 FECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILKEKYGNEKDLLAVAVVNKNSK-VKSLEELKGLK 203 (458)
Q Consensus 128 v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~E~y~~~~~~~aVAVVkk~s~-~~~l~dLkGkk 203 (458)
++-+.. +..++++++++|++|++..... +...+.-.+ .|+.. ...+.|++++++ +.+++||+|||
T Consensus 43 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~~~~p~~~--------~~~~~~~~~~~~~i~~~~dL~g~~ 111 (226)
T 1wdn_A 43 YELKPM-DFSGIIPALQTKNVDLALAGIT--ITDERKKAIDFSDGYYK--------SGLLVMVKANNNDVKSVKDLDGKV 111 (226)
T ss_dssp EEEEEE-CGGGHHHHHHTTSSSEEEEEEE--CCHHHHTTSEECSCCEE--------EEEEEEEETTCCSCSSSTTTTTCE
T ss_pred EEEEEC-CHHHHHHHHhCCCCCEEEEcCc--CCHHHhCccccccchhc--------CceEEEEeCCCCCCCCHHHhCCCE
Confidence 443333 6899999999999999863211 111111111 12211 155778888874 89999999999
Q ss_pred eeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcc
Q psy11925 204 SCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLK 282 (458)
Q Consensus 204 sChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~ 282 (458)
.+-. .|+... ..|.+.. + .- .+ ..+. ++. +++.|.
T Consensus 112 i~~~-----~g~~~~-~~l~~~~--~--~~----~~-~~~~-----------------------------~~~~~~~~l~ 147 (226)
T 1wdn_A 112 VAVK-----SGTGSV-DYAKANI--K--TK----DL-RQFP-----------------------------NIDNAYMELG 147 (226)
T ss_dssp EEEE-----TTSHHH-HHHHHHC--C--CS----EE-EEES-----------------------------SHHHHHHHHH
T ss_pred EEEE-----cCCcHH-HHHHHhC--C--Cc----eE-EEeC-----------------------------CHHHHHHHHH
Confidence 8763 233332 1233321 0 00 00 0111 245 999999
Q ss_pred cCCCcEEEEechhhhhh
Q psy11925 283 SGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 283 eg~GDVAFvk~~tv~~~ 299 (458)
+|..|++++...++...
T Consensus 148 ~g~vDa~~~~~~~~~~~ 164 (226)
T 1wdn_A 148 TNRADAVLHDTPNILYF 164 (226)
T ss_dssp TTSCSEEEEEHHHHHHH
T ss_pred cCCcCEEEeCcHHHHHH
Confidence 99999999988766654
No 45
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=95.72 E-value=0.04 Score=51.57 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=72.3
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCH 206 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksCh 206 (458)
+++-+.. +..++++++++|++|++..... +...+.-.+.. .+-|. ....+.||++++++.+++||+|||.+-
T Consensus 81 ~v~~~~~-~~~~~~~~l~~G~~D~~~~~~~--~~~~r~~~~~~--s~p~~---~~~~~l~~~~~~~i~~~~dL~g~~i~~ 152 (272)
T 2pvu_A 81 DYELKNI-GWDPLFASLQSKEVDMGISGIT--ITDERKQSYDF--SDPYF---EATQVILVKQGSPVKNALDLKGKTIGV 152 (272)
T ss_dssp CEEEEEC-CHHHHHHHHHHTSSSEECSSCB--CCHHHHTTEEE--CSCCE---EECEEEEEETTCCCCSGGGGTTSCEEE
T ss_pred ceEEEEC-CHHHHHHHHhCCCCCEEEeCCc--CCHHHHhcCcc--chhhh---ccceEEEEECCCCCCCHHHhCCCeEEE
Confidence 4554444 4899999999999999864211 11212111110 01010 014577889999899999999999876
Q ss_pred CCCCCCCchHHHHHHHHHc-CCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccC
Q psy11925 207 TAYMRTTGWVAPVYNLLEK-GLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSG 284 (458)
Q Consensus 207 tg~~~taGw~~Pv~~L~~~-~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg 284 (458)
.. |+... ..|.+. + . .- .+ ..|. ++. +++.|..|
T Consensus 153 ~~-----g~~~~-~~l~~~~~-~---~~----~i-~~~~-----------------------------~~~~~~~~l~~G 188 (272)
T 2pvu_A 153 QN-----ATTGQ-EAAEKLFG-K---GP----HI-KKFE-----------------------------TTVVAIMELLNG 188 (272)
T ss_dssp ET-----TSHHH-HHHHHHHC-S---ST----TE-EEES-----------------------------SHHHHHHHHHTT
T ss_pred Ec-----CchHH-HHHHHhcC-C---CC----eE-EEcC-----------------------------CHHHHHHHHHcC
Confidence 42 33332 223322 2 0 00 11 1111 245 99999999
Q ss_pred CCcEEEEechhhhhh
Q psy11925 285 DGDVAFIKQVKVNKA 299 (458)
Q Consensus 285 ~GDVAFvk~~tv~~~ 299 (458)
..|++++...++...
T Consensus 189 ~vDa~~~~~~~~~~~ 203 (272)
T 2pvu_A 189 GVDAVITDNAVANEY 203 (272)
T ss_dssp SCSEEEEEHHHHHHH
T ss_pred CccEEEeCHHHHHHH
Confidence 999999988776654
No 46
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=95.54 E-value=0.15 Score=50.46 Aligned_cols=213 Identities=12% Similarity=0.039 Sum_probs=117.3
Q ss_pred CCCceEEEeCChh---HHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHH--HHHHcCCcc---EEEeCCcceEE------
Q psy11925 95 PIKPIRWCVSSPE---GMSKCLAFKDAAFSRDIRPPFECNREKSSKVCL--KLIADGAAD---VITLDATEAVL------ 160 (458)
Q Consensus 95 p~~~vrwCv~s~~---E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci--~~I~~g~AD---~~~ld~~~~y~------ 160 (458)
|.++||+=|.... --.-.+.++... +..++-++..........-+ +.+.++.+| ++....+.+.+
T Consensus 17 P~~pi~iivp~~~GG~~D~~aR~la~~l-~~~lg~~vvV~N~pGa~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~ 95 (314)
T 2dvz_A 17 PSKAIRVIVPFAPGGSTDIIARLVTQRM-SQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRP 95 (314)
T ss_dssp CSSCEEEEESSCTTSHHHHHHHHHHHHH-HHHHTSCEEEEECCCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHST
T ss_pred CCCCEEEEEccCCccHHHHHHHHHHHHH-HHHhCCCEEEEECCCchHHHHHHHHHhCCCCCcEEEEecCcHHHHHHHHhC
Confidence 7788998776532 111223333321 11133456666655444444 778888998 55444332211
Q ss_pred eccCC----CceEEEEEeecCCcceEEEEEEecCCCccChhhhcC------C--ceeeCCCCCCCchHHHHHHHHH-cCC
Q psy11925 161 GRKNL----NLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKG------L--KSCHTAYMRTTGWVAPVYNLLE-KGL 227 (458)
Q Consensus 161 A~~~~----~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkG------k--ksChtg~~~taGw~~Pv~~L~~-~~~ 227 (458)
..-.| +++||..-. . ...|.||+++++++|++||.+ + +...+|.++ +..+-...|.+ .|+
T Consensus 96 ~~~~yd~~~df~pv~~~~-~----~~~~lvv~~ds~~~tl~dL~~~ak~~p~~~~~g~~g~Gs--~~hl~~~~l~~~~Gi 168 (314)
T 2dvz_A 96 KDLPYDPIKDFQPVTNFA-N----TANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCG--VLHLMGESFKMATGT 168 (314)
T ss_dssp TTCSCCTTTSEEEEEEEE-E----ECEEEEECTTSSCSSHHHHHHHHHTSTTTCEEEESCTTS--HHHHHHHHHHHHHTC
T ss_pred CCCCCCchhccceeeEcc-c----CCEEEEEeCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCc--HHHHHHHHHHHHhCC
Confidence 11122 567775321 1 167889999999999999975 2 444554542 33333334433 352
Q ss_pred CCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCCCcEEEEechhhhhhhhccccc
Q psy11925 228 IKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFK 306 (458)
Q Consensus 228 i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~ 306 (458)
.. .. +|= . |.. |+.-|..|..|++|.....+..++..
T Consensus 169 -~~------~~----------Vpy--------~-------------G~~~a~~al~~G~vD~~~~~~~~~~~~i~~---- 206 (314)
T 2dvz_A 169 -DI------VH----------VPY--------K-------------GSGPAVADAVGGQIELIFDNLPSSMPQIQA---- 206 (314)
T ss_dssp -CC------EE----------EEC--------S-------------SHHHHHHHHHHTSSSEEEEEHHHHHHHHHT----
T ss_pred -Ce------EE----------ccc--------C-------------CHHHHHHHHHcCCceEEEEcHHHHHHHHHc----
Confidence 10 00 220 0 445 99999999999999998887776432
Q ss_pred ccchhhhccCCCCCCCCCCCCcccccccCCCC-ccc-------ccc--CccccccccCCceEEEcCCCChhHHHHHHHHH
Q psy11925 307 TDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGG-RAP-------VSK--AADCNLGVVPPHMVVTSNSKSNVEIDTIRHAI 376 (458)
Q Consensus 307 ~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~-r~~-------v~~--~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l 376 (458)
| +.+ +|.-.+. |.+ +.+ |.. +....+.+++++++.+++.++++..+|
T Consensus 207 --g-----------------~lr--~Lav~~~~r~~~~pdvPt~~e~G~~~--~~~~~w~gl~ap~g~p~~vv~~l~~al 263 (314)
T 2dvz_A 207 --G-----------------KLR--AMAIAWPTRIDAIKDVPTFADAGFPV--LNQPVWYGLLAPKGTPMDVVNKLRDAA 263 (314)
T ss_dssp --T-----------------SSE--EEEEESSSCCGGGTTSCBTTTTTCGG--GCCCEEEEEEEETTCCHHHHHHHHHHH
T ss_pred --C-----------------CEE--EEEecCccccccCCCCCCHHhcCCCc--eEEeEEEEEEEcCCCCHHHHHHHHHHH
Confidence 1 122 2211110 111 000 110 122346789999999988888888888
Q ss_pred HHHH
Q psy11925 377 LSAA 380 (458)
Q Consensus 377 ~~~~ 380 (458)
.++.
T Consensus 264 ~~~~ 267 (314)
T 2dvz_A 264 VVAL 267 (314)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 47
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=95.42 E-value=0.094 Score=48.13 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=69.2
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEEEeecCCcceEEEEEEecCC-CccChhhhcCC
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILKEKYGNEKDLLAVAVVNKNS-KVKSLEELKGL 202 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~E~y~~~~~~~aVAVVkk~s-~~~~l~dLkGk 202 (458)
+++-+.. +...+++.+++|++|++..... +...+.-.+ .|++. ...+.|+++++ .+.+++||+||
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~~s~p~~~--------~~~~~~~~~~~~~i~~~~dL~g~ 131 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMT--IKEERRKAIDFSDPYYD--------SGLAAMVQANNTTIKSIDDLNGK 131 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEE--CCHHHHTTEEECSCCEE--------EEEEEEEETTCCSCCSSGGGTTS
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccc--cCHHHHcCcceecceee--------ccEEEEEECCCCCcCChHHhCCC
Confidence 4554443 6799999999999999643211 111111111 12111 14566778776 58999999999
Q ss_pred ceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhc
Q psy11925 203 KSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCL 281 (458)
Q Consensus 203 ksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL 281 (458)
+.+-. .|+... ..|.+.. + .- .+ ..+. +.. +++.|
T Consensus 132 ~i~v~-----~g~~~~-~~l~~~~--~--~~----~~-~~~~-----------------------------~~~~~~~~L 167 (249)
T 4f3p_A 132 VIAAK-----TGTATI-DWIKAHL--K--PK----EI-RQFP-----------------------------NIDQAYLAL 167 (249)
T ss_dssp EEEEE-----TTSHHH-HHHHHHC--C--CS----EE-EEES-----------------------------SHHHHHHHH
T ss_pred EEEEe-----CCChHH-HHHHhcC--C--Cc----eE-EEcC-----------------------------CHHHHHHHH
Confidence 98853 233322 2233321 0 00 00 0111 245 99999
Q ss_pred ccCCCcEEEEechhhhhh
Q psy11925 282 KSGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 282 ~eg~GDVAFvk~~tv~~~ 299 (458)
..|..|++++....+...
T Consensus 168 ~~GrvDa~i~~~~~~~~~ 185 (249)
T 4f3p_A 168 EAGRVDAAMHDTPNVLFF 185 (249)
T ss_dssp HTTSSSEEEEEHHHHHHH
T ss_pred HcCCeeEEEeCcHHHHHH
Confidence 999999999988877654
No 48
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=95.33 E-value=0.063 Score=47.83 Aligned_cols=122 Identities=14% Similarity=0.063 Sum_probs=71.2
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCc-cChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKV-KSLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~-~~l~dLkGkksC 205 (458)
+++-+. .+...+++++++|++|++..... +...+.-.+ ....-|.. ...+.++++++++ .+++||+||+.+
T Consensus 42 ~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~--~~s~p~~~---~~~~l~~~~~~~~~~~~~dL~g~~v~ 113 (227)
T 3tql_A 42 VCTISN-QPWDSLIPSLKLGKFDALFGGMN--ITTARQKEV--DFTDPYYT---NSVSFIADKNTPLTLSKQGLKGKIIG 113 (227)
T ss_dssp EEEEEE-CCHHHHHHHHHHTSCSEECSSCB--CCTTGGGTE--EECSCSBC---CEEEEEEETTSCCCCSTTTTTTCEEE
T ss_pred eEEEEe-CCHHHHHHHHhCCCCCEEEecCc--CCHhHHhhe--ecccceec---cceEEEEeCCCCCCCCHHHhCCCEEE
Confidence 344444 47999999999999999853211 111111111 11111110 1567788888877 799999999998
Q ss_pred eCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSG 284 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg 284 (458)
-. .|+... ..|.+.. + .. .+... ++ ++. +++.|..|
T Consensus 114 ~~-----~g~~~~-~~l~~~~--~-------~~-~~~~~----~~-----------------------~~~~~~~~l~~g 150 (227)
T 3tql_A 114 VQ-----GGTTFD-SYLQDSF--G-------NS-ITIQR----YP-----------------------SEEDALMDLTSG 150 (227)
T ss_dssp EE-----TTSHHH-HHHHHHH--G-------GG-SEEEE----ES-----------------------SHHHHHHHHTTT
T ss_pred EE-----ecccHH-HHHHHhc--c-------cc-ceEEE----cC-----------------------CHHHHHHHHHcC
Confidence 63 233332 2232221 0 00 01100 11 245 99999999
Q ss_pred CCcEEEEechhhhhh
Q psy11925 285 DGDVAFIKQVKVNKA 299 (458)
Q Consensus 285 ~GDVAFvk~~tv~~~ 299 (458)
..|++++...++...
T Consensus 151 rvDa~~~~~~~~~~~ 165 (227)
T 3tql_A 151 RVDAVVGDTPLIKQW 165 (227)
T ss_dssp SSSEEESCHHHHHHH
T ss_pred CcCEEEeChHHHHHH
Confidence 999999988777654
No 49
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=95.32 E-value=0.035 Score=52.82 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=72.0
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCH 206 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksCh 206 (458)
+++-+... ..++++++++|++|++...-. .|...+...+. +..-|. ....+.||++++++++++||+|||.+-
T Consensus 97 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~-~~t~~r~~~~~--~~~p~~---~~~~~l~~~~~~~i~s~~dL~G~~v~v 169 (283)
T 2yln_A 97 KVEFKETQ-WDSMMAGLKAGRFDVVANQVG-LTSPERQATFD--KSEPYS---WSGAVLVAHNDSNIKSIADIKGVKTAQ 169 (283)
T ss_dssp EEEEEECC-GGGHHHHHHHTSCSEECSSCC-CCSHHHHHHEE--ECSCSE---EECEEEEEETTCSCCSGGGCTTSEEEE
T ss_pred ceEEEECC-HHHHHHHHHCCCcCEEEecCc-cCChhhhcceE--eccCee---eecEEEEEECCCCCCCHHHhCCCEEEE
Confidence 46655554 899999999999999864321 11211211111 000010 014567889998899999999999985
Q ss_pred CCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCC
Q psy11925 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGD 285 (458)
Q Consensus 207 tg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~ 285 (458)
. .|+... ..|.+.++ .+ ..+. ++. +++.|.+|.
T Consensus 170 ~-----~g~~~~-~~l~~~~~----------~~-~~~~-----------------------------~~~~~~~~l~~g~ 203 (283)
T 2yln_A 170 S-----LTSNYG-EKAKAAGA----------QL-VPVD-----------------------------GLAQSLTLIEQKR 203 (283)
T ss_dssp C-----TTSHHH-HHHHHTTC----------EE-EECS-----------------------------SHHHHHHHHHTTS
T ss_pred e-----cCchHH-HHHHHcCC----------eE-EEeC-----------------------------CHHHHHHHHHcCC
Confidence 2 233221 23333221 11 0111 245 899999999
Q ss_pred CcEEEEechhhhhh
Q psy11925 286 GDVAFIKQVKVNKA 299 (458)
Q Consensus 286 GDVAFvk~~tv~~~ 299 (458)
.|++++....+...
T Consensus 204 vDa~i~~~~~~~~~ 217 (283)
T 2yln_A 204 ADATLNDELAVLDY 217 (283)
T ss_dssp CCEEEEEHHHHHHH
T ss_pred CCEEEecHHHHHHH
Confidence 99999988776654
No 50
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=95.11 E-value=0.036 Score=50.62 Aligned_cols=120 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCce---EEEEEeecCCcceEEEEEEecCCCccChhhhcCCc
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLR---PILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLK 203 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~---pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkk 203 (458)
+++-+.. +..+.++++++|++|++..... +...+.-.+. |+.. ...+.||++++++.+++||+|++
T Consensus 82 ~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~~~~~~~~~~p~~~--------~~~~~~~~~~~~i~~~~dL~g~~ 150 (259)
T 2v25_A 82 KIKLVAV-NAKTRGPLLDNGSVDAVIATFT--ITPERKRIYNFSEPYYQ--------DAIGLLVLKEKKYKSLADMKGAN 150 (259)
T ss_dssp SEEEEEC-CTTTHHHHHHTTSCSEECSSCB--CCHHHHTTEEECSCSEE--------EEEEEEEEGGGCCCSGGGCTTCE
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEecCc--cCHHHHhcCccccccee--------CceEEEEeCCCCCCCHHHhCCCE
Confidence 4555544 4589999999999999864321 1111111111 1111 15577889999999999999999
Q ss_pred eeeCCCCCCCchHHHHHHH-HHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhc
Q psy11925 204 SCHTAYMRTTGWVAPVYNL-LEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCL 281 (458)
Q Consensus 204 sChtg~~~taGw~~Pv~~L-~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL 281 (458)
.+.. .+.+ +..-+..+ .+.|+ .. .+. .+. ++. +++.|
T Consensus 151 i~~~-~g~~--~~~~~~~~~~~~g~-~~-------~~~-~~~-----------------------------~~~~~~~~l 189 (259)
T 2v25_A 151 IGVA-QAAT--TKKAIGEAAKKIGI-DV-------KFS-EFP-----------------------------DYPSIKAAL 189 (259)
T ss_dssp EEEE-TTCS--HHHHHHHHHHHTTC-CC-------EEE-EES-----------------------------SHHHHHHHH
T ss_pred EEEe-cCCc--hHHHHHHHHHhcCC-ce-------eEE-EeC-----------------------------CHHHHHHHH
Confidence 8874 2222 22222222 23342 10 111 111 245 89999
Q ss_pred ccCCCcEEEEechhhhh
Q psy11925 282 KSGDGDVAFIKQVKVNK 298 (458)
Q Consensus 282 ~eg~GDVAFvk~~tv~~ 298 (458)
..|..|++++....+..
T Consensus 190 ~~g~vDa~~~~~~~~~~ 206 (259)
T 2v25_A 190 DAKRVDAFSVDKSILLG 206 (259)
T ss_dssp HTTSSSEEEEEHHHHTT
T ss_pred HcCCCcEEEecHHHHHH
Confidence 99999999998776654
No 51
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=94.99 E-value=0.13 Score=45.96 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=70.2
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcce-EEEEEEecCCCccChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDL-LAVAVVNKNSKVKSLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~-~aVAVVkk~s~~~~l~dLkGkksC 205 (458)
+++-+. .+...+++++.+|++|++..... +...+.-.+. ...-|. .. ..+.|+++++ +.+++||+|||.+
T Consensus 46 ~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~--~s~p~~---~~~~~~~~~~~~~-~~~~~dL~g~~v~ 116 (229)
T 2y7i_A 46 ECSFTN-QSFDSLIPSLRFKKFDAVIAGMD--MTPKREQQVS--FSQPYY---EGLSAVVVTRKGA-YHTFADLKGKKVG 116 (229)
T ss_dssp EEEEEE-CCGGGHHHHHHTTSCSEECSSCB--CCHHHHTTSE--ECSCSB---CCCCEEEEEETTS-CCSTGGGTTCEEE
T ss_pred eEEEEE-cCHHHHHHHHhCCCceEEEecCc--cCHHHhccee--eccccc---cCCcEEEEEeCCC-CCCHHHHCCCEEE
Confidence 455444 37899999999999999863211 1111211111 011111 11 3466778887 8999999999987
Q ss_pred eCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSG 284 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg 284 (458)
-. .|+... ..|.+.. + .- .+ ..+. ++. +++.|..|
T Consensus 117 ~~-----~g~~~~-~~l~~~~--~--~~----~~-~~~~-----------------------------~~~~~~~~l~~g 152 (229)
T 2y7i_A 117 LE-----NGTTHQ-RYLQDKQ--Q--AI----TP-VAYD-----------------------------SYLNAFTDLKNN 152 (229)
T ss_dssp EE-----TTSHHH-HHHHHHC--T--TS----EE-EEES-----------------------------CHHHHHHHHHTT
T ss_pred Ee-----cCCcHH-HHHHHhC--C--CC----eE-EecC-----------------------------CHHHHHHHHHcC
Confidence 63 344432 2233221 0 00 00 0111 245 99999999
Q ss_pred CCcEEEEechhhhhh
Q psy11925 285 DGDVAFIKQVKVNKA 299 (458)
Q Consensus 285 ~GDVAFvk~~tv~~~ 299 (458)
..|++++...++...
T Consensus 153 rvDa~~~~~~~~~~~ 167 (229)
T 2y7i_A 153 RLEGVFGDVAAIGKW 167 (229)
T ss_dssp SCSEEEEEHHHHHHH
T ss_pred CcCEEEechHHHHHH
Confidence 999999988776654
No 52
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=94.65 E-value=0.19 Score=46.94 Aligned_cols=121 Identities=15% Similarity=0.104 Sum_probs=71.2
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecC-CCccChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKN-SKVKSLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~-s~~~~l~dLkGkksC 205 (458)
+++-+...+..++++++++|++|++. +-.+...+.-.+. ...-|. ....+.|++++ +.+.+++||+|||.+
T Consensus 72 ~~~~~~~~~~~~~~~~l~~G~~D~~~---~~~~t~~r~~~~~--fs~p~~---~~~~~l~~~~~~~~i~~~~dL~g~~i~ 143 (267)
T 3mpk_A 72 DFEIIGVDTVEELIAKLRSGEADMAG---ALFVNSARESFLS--FSRPYV---RNGMVIVTRQDPDAPVDADHLDGRTVA 143 (267)
T ss_dssp EEEEEEESSHHHHHHHHHHTSCSEEE---EEECCGGGTTTEE--ECSCSE---EECEEEEEESSTTSCSSGGGCTTCEEE
T ss_pred eEEEEecCCHHHHHHHHHCCCccEEe---cccCChhhhcceE--echhhc---cCceEEEEECCCCCCCCHHHHCCCEEE
Confidence 46666667899999999999999975 2222222221111 011110 01455667776 668899999999998
Q ss_pred eCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSG 284 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg 284 (458)
-..- +.. ...|.+.. + .- .+ ..|. ... +++.|..|
T Consensus 144 v~~g-----~~~-~~~l~~~~--~--~~----~~-~~~~-----------------------------~~~~~l~~L~~G 179 (267)
T 3mpk_A 144 LVRN-----SAA-IPLLQRRY--P--QA----KV-VTAD-----------------------------NPSEAMLMVANG 179 (267)
T ss_dssp EETT-----CTH-HHHHHHHC--T--TS----EE-EEES-----------------------------SHHHHHHHHHHT
T ss_pred EeCC-----chh-HHHHHHhC--C--Cc----EE-EEeC-----------------------------CHHHHHHHHHcC
Confidence 7642 221 11233221 0 00 00 1111 245 99999999
Q ss_pred CCcEEEEechhhhhh
Q psy11925 285 DGDVAFIKQVKVNKA 299 (458)
Q Consensus 285 ~GDVAFvk~~tv~~~ 299 (458)
..|+++....++...
T Consensus 180 rvDa~i~~~~~~~~~ 194 (267)
T 3mpk_A 180 QADAVVQTQISASYY 194 (267)
T ss_dssp SCSEEEEEHHHHHHH
T ss_pred CCCEEEecHHHHHHH
Confidence 999999987766554
No 53
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=94.55 E-value=0.22 Score=45.35 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=68.9
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccC--CCc-eEEEEEeecCCcceEEEEEEecC--CCccChhhhc-
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKN--LNL-RPILKEKYGNEKDLLAVAVVNKN--SKVKSLEELK- 200 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~--~~L-~pil~E~y~~~~~~~aVAVVkk~--s~~~~l~dLk- 200 (458)
+++-+. .+...+++++++|++|++..... +...+. +.. .|++. ...+.+++++ +.+.+++||+
T Consensus 45 ~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~--~t~~r~~~~~~s~p~~~--------~~~~~~~~~~~~~~i~~~~dL~~ 113 (245)
T 3k4u_A 45 KLKLVP-TSWDGLIPGLVTEKFDIIISGMT--ISQERNLRVNFVEPYIV--------VGQSLLVKKGLEKGVKSYKDLDK 113 (245)
T ss_dssp EEEEEE-CCGGGHHHHHHTTSCSEECSSCB--CCHHHHTTSEECSCSEE--------ECEEEEEETTTTTTCCSGGGGCC
T ss_pred eEEEEE-ccHHHHHHHHhCCCcCEEEecCc--CCHHHHhhcCcchhhhe--------eceEEEEECCcccccCCHHHhcc
Confidence 344444 37899999999999999753211 111111 111 12211 1346677877 6788999999
Q ss_pred -CCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hh
Q psy11925 201 -GLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PL 278 (458)
Q Consensus 201 -GkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~ 278 (458)
|++.+-. .|+... ..|.+. .+ .- .+ ..|. +++ ++
T Consensus 114 ~g~~i~v~-----~g~~~~-~~l~~~--~~--~~----~~-~~~~-----------------------------~~~~~~ 149 (245)
T 3k4u_A 114 PELTLVTK-----FGVSAE-YAAKRL--FK--NA----KL-KTYD-----------------------------TEAEAV 149 (245)
T ss_dssp SSCEEEEE-----TTSHHH-HHHHHH--CS--SS----EE-EEES-----------------------------SHHHHH
T ss_pred CCcEEEEe-----CCcHHH-HHHHhh--CC--cC----CE-EEeC-----------------------------CHHHHH
Confidence 8998774 233332 122221 11 00 00 1111 245 99
Q ss_pred hhcccCCCcEEEEechhhhhh
Q psy11925 279 QCLKSGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 279 rCL~eg~GDVAFvk~~tv~~~ 299 (458)
+.|..|..|+++....++...
T Consensus 150 ~~L~~GrvDa~i~~~~~~~~~ 170 (245)
T 3k4u_A 150 QEVLNGKADMFIFDLPFNVAF 170 (245)
T ss_dssp HHHHSSSSEEEEEEHHHHHHH
T ss_pred HHHHcCCCcEEEEcHHHHHHH
Confidence 999999999999987766654
No 54
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=94.13 E-value=0.13 Score=45.85 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=70.1
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccC--CCc-eEEEEEeecCCcceEEEEEEecCC----CccChhhh
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKN--LNL-RPILKEKYGNEKDLLAVAVVNKNS----KVKSLEEL 199 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~--~~L-~pil~E~y~~~~~~~aVAVVkk~s----~~~~l~dL 199 (458)
+++-+...+..++++++.+|++|++..... +...+. +.. .|+.. ...+.++++++ .+.+++||
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~~~~p~~~--------~~~~~~~~~~~~~~~~~~~~~dL 110 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAIS--ITAEREQNFDFSLPIFA--------SGLQIMVRNLESGTGDIRSIDDL 110 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCB--CCHHHHHHSEECSCSEE--------EEEEEEEEC-----CCCCSGGGC
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEeccc--cCHHHHccceecccchh--------cceEEEEECCccccCCcCCHHHc
Confidence 566677768899999999999999853211 111111 111 12211 14456677764 67899999
Q ss_pred cCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hh
Q psy11925 200 KGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PL 278 (458)
Q Consensus 200 kGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~ 278 (458)
+|||.+-. .|+.. ...|.+.++ .+ ..+ + .+. ++
T Consensus 111 ~g~~i~~~-----~g~~~-~~~l~~~~~----------~~-~~~------~-----------------------~~~~~~ 144 (228)
T 2pyy_A 111 PGKVVATT-----AGSTA-ATYLREHHI----------SV-LEV------P-----------------------KIEEAY 144 (228)
T ss_dssp TTCEEEEE-----TTSHH-HHHHHHTTC----------EE-EEE------S-----------------------SHHHHH
T ss_pred CCCeEEEE-----cCcHH-HHHHHHcCC----------ce-Eec------C-----------------------CHHHHH
Confidence 99998763 23432 123333221 00 011 1 245 99
Q ss_pred hhcccCCCcEEEEechhhhhh
Q psy11925 279 QCLKSGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 279 rCL~eg~GDVAFvk~~tv~~~ 299 (458)
+.|..|..|++++...++...
T Consensus 145 ~~l~~g~~D~~~~~~~~~~~~ 165 (228)
T 2pyy_A 145 KALQTKKADAVVFDAPVLLFY 165 (228)
T ss_dssp HHHHTTSSSEEEEEHHHHHHH
T ss_pred HHHHcCCCCEEEecHHHHHHH
Confidence 999999999999988766553
No 55
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=93.64 E-value=0.45 Score=48.40 Aligned_cols=129 Identities=14% Similarity=0.003 Sum_probs=77.9
Q ss_pred CeEEEecCCHHHHHHHHHcCC----ccEEEeCCcceE-Ee-c-----cCCCceEEEEEeecCCcceEEEEEEecCC---C
Q psy11925 127 PFECNREKSSKVCLKLIADGA----ADVITLDATEAV-LG-R-----KNLNLRPILKEKYGNEKDLLAVAVVNKNS---K 192 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~----AD~~~ld~~~~y-~A-~-----~~~~L~pil~E~y~~~~~~~aVAVVkk~s---~ 192 (458)
.++-+...+..+.++++..|+ +|++.+..+..+ .+ + +...++.+... +.. ..+ .+|++++ .
T Consensus 64 ~Ve~~~~~~~~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---g~~-i~v~~~~~~~~ 138 (417)
T 2g29_A 64 DVEVLKQASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARL-NVN---GQG-IQLGNNYKDLK 138 (417)
T ss_dssp TCEEEECSCHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEEC-CBS---CEE-EEECGGGGGGC
T ss_pred eeEEEecCCHHHHHHHHHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEEEEe-ccC---CeE-EEEecchhhcc
Confidence 677778778999999999999 999987543222 11 1 23344434322 111 134 4566665 3
Q ss_pred c-cCh-------hhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhh
Q psy11925 193 V-KSL-------EELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLE 264 (458)
Q Consensus 193 ~-~~l-------~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC 264 (458)
+ +++ +||||||...+..+++. ..+-...|.+.|+-+..+ + ++-. +|
T Consensus 139 i~~s~~~l~~~~~dLkGk~iav~~~gs~~-~~~l~~~L~~~Gl~~~~d------v-~~v~----~~-------------- 192 (417)
T 2g29_A 139 VGTDAAPLKEAFAKVTDPKVAMTFPGGTH-DMWIRYWLAAGGMEPGKD------F-STIV----VP-------------- 192 (417)
T ss_dssp CCSCCTTHHHHHHTSSSCEEEESSTTSHH-HHHHHHHHHHTTCCBTTT------B-EEEE----CC--------------
T ss_pred ccCCHHHHHHHHHhcCCCEEEEeCCCCHH-HHHHHHHHHHcCCCCCCc------e-EEEE----CC--------------
Confidence 5 676 89999999998776543 333344566667432111 1 1110 11
Q ss_pred hhCCCCCCCChh-hhhhcccCCCcEEEEechhh
Q psy11925 265 KICPKATRVTYT-PLQCLKSGDGDVAFIKQVKV 296 (458)
Q Consensus 265 ~lC~g~~~CGy~-A~rCL~eg~GDVAFvk~~tv 296 (458)
.. ++..|..|..|++++.....
T Consensus 193 ----------~~~~~~aL~~G~vDa~~~~eP~~ 215 (417)
T 2g29_A 193 ----------PAQMVANVKVNAMESFCVGEPWP 215 (417)
T ss_dssp ----------GGGHHHHHHTTSCSEEEEETTHH
T ss_pred ----------HHHHHHHHHcCCCCEEEeCCCHH
Confidence 12 67788999999999875443
No 56
>3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium}
Probab=92.50 E-value=0.25 Score=49.48 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=29.9
Q ss_pred cChhhhcCCceeeCCCCCCCchHHHHHHHHHc
Q psy11925 194 KSLEELKGLKSCHTAYMRTTGWVAPVYNLLEK 225 (458)
Q Consensus 194 ~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~ 225 (458)
.+|++|+....-|.+..+.+||.+|...|.++
T Consensus 175 k~Wedf~~~gi~~~~~sSa~~Y~yp~~lL~kh 206 (344)
T 3myu_A 175 KNWNQFMKFGIGHGQTNSASRFELPDLLFRKH 206 (344)
T ss_dssp TCHHHHHTTCEEECCTTCTTTTHHHHHHHHHH
T ss_pred cCHHHHhcCCeEEecCCCCcccccHHHHHHHH
Confidence 68999999999999999999999999888775
No 57
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=91.83 E-value=0.25 Score=45.76 Aligned_cols=73 Identities=18% Similarity=0.100 Sum_probs=41.8
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecC--CCccChhhhcCCce
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKN--SKVKSLEELKGLKS 204 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~--s~~~~l~dLkGkks 204 (458)
+++-+.. +...+++++++|++|++... -.+...+.-.+ ...+-|. ....+.||+++ +.+.+++||+|||.
T Consensus 69 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~--~~~t~~r~~~~--~fs~p~~---~~~~~~~~~~~~~~~i~~~~dL~g~~v 140 (259)
T 4dz1_A 69 KLNITEY-AWDGMLGAVASGQADVAFSG--ISITDKRKKVI--DFSEPYY---INSFYLVSMANHKITLNNLNELNKYSI 140 (259)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSSSEEEEE--EECCHHHHTTE--EECCCSE---EEEEEEEEETTSCCCCCSGGGGGGSCE
T ss_pred eEEEEEc-CHHHHHHHHhCCCCCEEEEC--CcCCHHHhhcc--ccccchh---hCceEEEEEcCCCCCCCCHHHhCCCEE
Confidence 4555555 89999999999999996532 01111111111 0001010 01334455543 36889999999999
Q ss_pred eeC
Q psy11925 205 CHT 207 (458)
Q Consensus 205 Cht 207 (458)
+-.
T Consensus 141 ~v~ 143 (259)
T 4dz1_A 141 GYP 143 (259)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 58
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=91.82 E-value=0.24 Score=47.19 Aligned_cols=94 Identities=10% Similarity=0.041 Sum_probs=64.4
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEe---ccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhh-cC
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVLG---RKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEEL-KG 201 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A---~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dL-kG 201 (458)
-.++-+.-+++.++.+++.+|++|+..+....+..+ .+.+.|+++..-... . .+ +. ++.+++++|| +|
T Consensus 30 l~ve~~~f~d~~~~n~AL~~G~iD~n~fq~~~~l~~~~~~~g~~l~~v~~~~~~--p--~g--~y--s~kiksl~dL~~G 101 (241)
T 1xs5_A 30 IELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVGNVHVE--P--LA--LY--SRTYRHVSDFPAG 101 (241)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHHHTCCEEEEEEEEEC--C--CE--EE--CSSCCSGGGCCTT
T ss_pred CeEEEEEcCChHHHHHHHHcCCCCEeccCCHHHHHHHHHHCCCCEEEEEeeccc--c--ce--ee--cCCCCChHHcCCC
Confidence 368889999999999999999999998766555443 234667766432211 1 11 11 3568999999 99
Q ss_pred CceeeCCCCCCCchHHHHHHHHHcCCCC
Q psy11925 202 LKSCHTAYMRTTGWVAPVYNLLEKGLIK 229 (458)
Q Consensus 202 kksChtg~~~taGw~~Pv~~L~~~~~i~ 229 (458)
||..-+.- ++.-..-+..|.+.|+|.
T Consensus 102 ~~Iaip~d--~sn~~ral~lL~~aGli~ 127 (241)
T 1xs5_A 102 AVIAIPND--SSNEARALRLLEAAGFIR 127 (241)
T ss_dssp CEEEEECS--HHHHHHHHHHHHHTTSCE
T ss_pred CEEEEeCC--CchHHHHHHHHHHCCCEE
Confidence 99988764 333333345677789874
No 59
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=91.78 E-value=1.2 Score=42.65 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=71.3
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEe-ccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLG-RKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A-~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksC 205 (458)
.++-..-.+..+.++++.+|++|++.++......+ .+..+++-+..... + . +.||.+++ |||||..
T Consensus 34 ~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~i~~~~~~--g---~-~~lv~~~~-------LkGK~Ia 100 (283)
T 3hn0_A 34 KVQVKVVDSPDLAQALLIKQETDIAVLPMINAANLYNKGIKIKLAGCPIW--G---T-LYLVEKTP-------LKEPALY 100 (283)
T ss_dssp EEEEEEESCHHHHHHHHHTTCCSEEEEEHHHHHHHHHTTCSCEEEEEEEC--C---C-CEEEECSS-------CCSCCEE
T ss_pred cEEEEEeCCHHHHHHHHHCCCCCEEEEcHHHHHHHHHCCCCeEEEEEecc--c---E-EEEEecCC-------CCCCEEE
Confidence 56777777899999999999999999865433222 12223443322111 1 1 12344332 9999999
Q ss_pred eCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSG 284 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg 284 (458)
-++.+++ ...+-...|.+.|+ +. + + .| ++- ... +...|.+|
T Consensus 101 v~~~gs~-~~~ll~~~L~~~Gl----dv---~-~-~~------~~~----------------------~~~~~~~al~~G 142 (283)
T 3hn0_A 101 VFGNGTT-PDILTRYYLGRQRL----DY---P-L-NY------AFN----------------------TAGEITQGILAG 142 (283)
T ss_dssp CSSTTSH-HHHHHHHHHHHHTC----CC---C-E-EC------SCC----------------------SHHHHHHHHHHT
T ss_pred ecCCCCc-HHHHHHHHHHHcCC----ce---E-E-EE------ccC----------------------CHHHHHHHHHcC
Confidence 8877744 44444445666675 11 0 0 01 110 022 66789999
Q ss_pred CCcEEEEechhhh
Q psy11925 285 DGDVAFIKQVKVN 297 (458)
Q Consensus 285 ~GDVAFvk~~tv~ 297 (458)
..|++++-+-.+.
T Consensus 143 ~vDa~~~~eP~~~ 155 (283)
T 3hn0_A 143 KVNRAVLGEPFLS 155 (283)
T ss_dssp SCSEEEECTTHHH
T ss_pred CCCEEEecccHHH
Confidence 9999999775443
No 60
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=91.11 E-value=0.39 Score=43.91 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=70.2
Q ss_pred eEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEEEeecCCcceEEEEEEecCCC--ccChhhhc--
Q psy11925 128 FECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILKEKYGNEKDLLAVAVVNKNSK--VKSLEELK-- 200 (458)
Q Consensus 128 v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~E~y~~~~~~~aVAVVkk~s~--~~~l~dLk-- 200 (458)
++-+.. +...+++++++|++|++..... +...+.-.+ .|+.. ...+.+++++++ +.+++||+
T Consensus 54 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~t~~r~~~~~~s~p~~~--------~~~~~~~~~~~~~~i~~~~dL~~~ 122 (257)
T 2q88_A 54 VVASIS-EYGAMIPGLQAGRHDAITAGLF--MKPERCAAVAYSQPILC--------DAEAFALKKGNPLGLKSYKDIADN 122 (257)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSCCB--CCHHHHTTSEECSCCCE--------ECEEEEEETTCTTCCCBHHHHHHC
T ss_pred eeEEeC-CHHHHHHHHHCCCcCEEEeccc--CCHHHHhccccccchhc--------CceEEEEECCCccCCCCHHHHhcc
Confidence 444443 5899999999999999863211 111111111 12110 145677788874 78999999
Q ss_pred -CCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hh
Q psy11925 201 -GLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PL 278 (458)
Q Consensus 201 -GkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~ 278 (458)
||+.+-. .|+... ..|.+.|+ +. . .+ ..+. ++. ++
T Consensus 123 ~g~~i~~~-----~g~~~~-~~l~~~~~-~~-----~-~~-~~~~-----------------------------~~~~~~ 159 (257)
T 2q88_A 123 PDAKIGAP-----GGGTEE-KLALEAGV-PR-----D-RV-IVVP-----------------------------DGQSGL 159 (257)
T ss_dssp TTCCEEEC-----TTSHHH-HHHHHTTC-CG-----G-GE-EECS-----------------------------SHHHHH
T ss_pred CCceEEEE-----CCcccH-HHHHhcCC-CC-----c-eE-EEcC-----------------------------CHHHHH
Confidence 9998763 344432 23444332 10 0 01 1111 245 99
Q ss_pred hhcccCCCcEEEEechhhhhh
Q psy11925 279 QCLKSGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 279 rCL~eg~GDVAFvk~~tv~~~ 299 (458)
+.|..|..|++++...++...
T Consensus 160 ~~l~~grvDa~i~~~~~~~~~ 180 (257)
T 2q88_A 160 KMLQDGRIDVYSLPVLSINDL 180 (257)
T ss_dssp HHHHHTSCSEEEEEHHHHHHH
T ss_pred HHHHcCCCcEEEcCHHHHHHH
Confidence 999999999999988776654
No 61
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=91.04 E-value=0.19 Score=48.37 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceeeCCCCCC
Q psy11925 133 EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTAYMRT 212 (458)
Q Consensus 133 ~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksChtg~~~t 212 (458)
..+..++++++..|++|++.+....+.....++.+.|.+.-. ..+.. .+|.||.+ ++ ++||||||..-++.++|
T Consensus 39 ~~~~~~l~~al~~G~iDia~~~~~~~~~~~~~~~il~~~~~~-~~g~~-~sv~lv~~-~~---i~DLkGKkIav~~~s~t 112 (291)
T 2nxo_A 39 KDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVG-CDGPV-MSCVIVSQ-VP---LDRLDGARVALGSTSRT 112 (291)
T ss_dssp EECHHHHHHHHHTTSCSEEEEEHHHHHHTGGGEEEEEEEEEE-ESSCC-SSEEEEES-SC---TTSCSSSEEEEETTCSH
T ss_pred ECCHHHHHHHHHcCCCCEeehhHHHHHhCcccEEEcCCcccc-ccCCc-eEEEEEeC-CC---HHHhCCCEEEeCCCChH
Confidence 455789999999999999987644322111223334433221 11111 44556666 33 58999999999886644
Q ss_pred CchHHHHHHHHHc-C
Q psy11925 213 TGWVAPVYNLLEK-G 226 (458)
Q Consensus 213 aGw~~Pv~~L~~~-~ 226 (458)
+ ..+-...|.+. |
T Consensus 113 ~-~~ll~~ll~~~~G 126 (291)
T 2nxo_A 113 S-VRLAQLLLSERFG 126 (291)
T ss_dssp H-HHHHHHHHHHTSC
T ss_pred H-HHHHHHHHHHhhC
Confidence 3 33333334343 6
No 62
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=90.69 E-value=0.073 Score=50.24 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=94.9
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCH 206 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksCh 206 (458)
.++- ...+..++++++.+|++|++.++...+..+..++.+.++ ....+ . .+...+|.+++ ++||||||...
T Consensus 31 ~v~~-~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~~~i~~~-~~~~~--~-~~~~~lv~~~~----~~dLkGk~Ia~ 101 (272)
T 2czl_A 31 PLEP-VLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRS-GGALG--R-GVGPLVVARGP----LQALEGLRVAV 101 (272)
T ss_dssp CEEE-EECCHHHHHHHHHTTCCSEEEEEHHHHTTCTTTEEECSS-SCEEE--S-SCCCEEEESSC----CSCCTTCEEEE
T ss_pred eeEE-ecCCHHHHHHHHHcCCCCEEEecHHHHHhhhCceEEeec-ccccC--C-CCceEEEECCC----hHHhCCCEEEe
Confidence 4555 566789999999999999999865543333222222221 00011 0 12222554443 88999999999
Q ss_pred CCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCC
Q psy11925 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGD 285 (458)
Q Consensus 207 tg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~ 285 (458)
++.+ +.++.+.- .|+++. ++-. ++ .. +...|..|+
T Consensus 102 ~~~~-~~~~~ll~-~ll~~~--------------~~~~----~~------------------------~~~~~~al~~G~ 137 (272)
T 2czl_A 102 PGRH-TTAYFLLS-LYAQGF--------------VPVE----VR------------------------YDRILPMVAQGE 137 (272)
T ss_dssp SCTT-SHHHHHHH-HHCSSC--------------EEEE----CC------------------------GGGHHHHHHTTS
T ss_pred CCCC-chHHHHHH-HHhccC--------------ceee----cC------------------------hHHHHHHHHCCC
Confidence 8754 44454433 232221 1110 11 12 667788999
Q ss_pred CcEEEEe-chhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCcc-ccccccCCceEEEcCC
Q psy11925 286 GDVAFIK-QVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAAD-CNLGVVPPHMVVTSNS 363 (458)
Q Consensus 286 GDVAFvk-~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~-C~l~~vP~~aVv~r~~ 363 (458)
.|.+++- ...+. .. .. .++ .+- |. .. .|.. -. ...|.+.+++|++
T Consensus 138 vDa~~~~~ep~~~-~~------~~------------------g~~--~~~-d~--~~--~w~~~~g-~~~~~~~~~~~~~ 184 (272)
T 2czl_A 138 VEAGLIIHESRFT-YP------RY------------------GLV--QVV-DL--GA--WWEERTG-LPLPLGAILARRD 184 (272)
T ss_dssp SSEEEECTTHHHH-GG------GG------------------TCE--EEE-EH--HH--HHHHHHS-SCEEEEEEEEEGG
T ss_pred CCEEEEecchhhh-hh------hc------------------CCc--cHH-HH--HH--HHHHhcC-CCCCcchhhcccc
Confidence 9999986 33332 10 00 112 111 10 00 0100 00 2356778888888
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCC
Q psy11925 364 KSNVEIDTIRHAILSAADLFSKKP 387 (458)
Q Consensus 364 ~~~~~~~~i~~~l~~~~~~fg~~~ 387 (458)
..++..+.+.+++.+..++.-.++
T Consensus 185 ~~p~~v~~~~~a~~~a~~~~~~~p 208 (272)
T 2czl_A 185 LGEGLIRALDEAVRRSVAYALAHP 208 (272)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHSG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCH
Confidence 767777788888888776654443
No 63
>3eki_A High affinity transport system protein P37; TPP, cell membrane, lipoprotein, membrane, transport protein, palmitate; HET: TPP; 1.60A {Mycoplasma hyorhinis} PDB: 3e79_A* 3e78_A*
Probab=90.56 E-value=0.63 Score=47.42 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=29.9
Q ss_pred cChhhhcCCceeeCCCCCCCchHHHHHHHHHc
Q psy11925 194 KSLEELKGLKSCHTAYMRTTGWVAPVYNLLEK 225 (458)
Q Consensus 194 ~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~ 225 (458)
.+|++|+....-|.+..+.+||.+|...|.++
T Consensus 238 ktWedf~~~gi~~~~~sSa~gYiyp~llL~kh 269 (403)
T 3eki_A 238 KDWNTFRNFGILHGKDNSSSKFKLEETILKNH 269 (403)
T ss_dssp TCHHHHHHTCEEECCTTCTTTTHHHHHHHHHH
T ss_pred cCHHHHhcCCeEEecCCCCcccccHHHHHHHH
Confidence 68999999999999999999999999888775
No 64
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=90.52 E-value=0.69 Score=44.80 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=53.3
Q ss_pred CeEEEecCC-HHHHHHHHHcCCccEEEeCCcceEEec-cCCC-ceEEEEEeecCCcceEEEEEEecCC-CccChhhhcCC
Q psy11925 127 PFECNREKS-SKVCLKLIADGAADVITLDATEAVLGR-KNLN-LRPILKEKYGNEKDLLAVAVVNKNS-KVKSLEELKGL 202 (458)
Q Consensus 127 ~v~Cv~~~s-~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~~~~-L~pil~E~y~~~~~~~aVAVVkk~s-~~~~l~dLkGk 202 (458)
.++-+...+ ....++++.+|++|++......+..+. +... ++.|.. .+.. . ...+.+|++++ ++++++|| |
T Consensus 45 ~V~~~~~~~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~-~~~~-~-~~~~i~v~~ds~~i~s~~DL--K 119 (321)
T 2x7q_A 45 SIEFVKVPEGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDT-YVKS-P-LLWAVSTGSNRDDVTDAKQL--K 119 (321)
T ss_dssp CEEEEECTTCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEE-EECS-C-CEEEEEEESSCTTCSSGGGC--C
T ss_pred eEEEEECCCCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEE-ecCC-C-cceEEEECCCCCCCCChHHc--c
Confidence 566666444 345899999999999987665444432 3233 555433 2211 1 13456778888 89999999 9
Q ss_pred ceeeCCCCCC
Q psy11925 203 KSCHTAYMRT 212 (458)
Q Consensus 203 ksChtg~~~t 212 (458)
|...++.+++
T Consensus 120 ~i~~~~~gs~ 129 (321)
T 2x7q_A 120 RIGVSRIGSG 129 (321)
T ss_dssp EEEESSTTSH
T ss_pred eEEeeCCCcH
Confidence 9998876643
No 65
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=90.06 E-value=0.3 Score=50.14 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=55.4
Q ss_pred EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHc-CCCCCCCCccccccccccccCcccCCCCccccCCC
Q psy11925 182 LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEK-GLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAP 260 (458)
Q Consensus 182 ~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~-~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~ 260 (458)
..+.||+|+|++++++||+| ..-+.-..++++..|+..|.++ |. +. .+.+|=
T Consensus 17 ~~~vvV~kds~i~sl~DLkg--vgv~~~~~~~~~~~~~~~i~~~~g~----~~----~~~~y~----------------- 69 (398)
T 2xxp_A 17 SLSVAVLADSEIENVTQLTS--VTAPTGTDNENIQKLLADIKSSQNT----DL----TVNQSS----------------- 69 (398)
T ss_dssp EEEEEEETTCSCCSGGGCSE--EEECTTTSHHHHHHHHHHHHHHSCC----CC----EEEECS-----------------
T ss_pred EEEEEEECCCCcCCHHHhcC--eeeECCCCHHHHHHHHHHHHHhhCC----cc----eEEecC-----------------
Confidence 67778899999999999998 6665556678999999988776 41 01 111111
Q ss_pred chhhhhCCCCCCCChh-hhhhcccCCCcEEEEech
Q psy11925 261 ASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQV 294 (458)
Q Consensus 261 ~~LC~lC~g~~~CGy~-A~rCL~eg~GDVAFvk~~ 294 (458)
+|. |+..|.+|..|++++...
T Consensus 70 -------------~~~~a~~aL~nG~vDAiv~~~~ 91 (398)
T 2xxp_A 70 -------------SYLAAYKSLIAGETKAIVLNSV 91 (398)
T ss_dssp -------------SHHHHHHHHHTTSCSCEEEEHH
T ss_pred -------------CHHHHHHHHHcCCCCEEEEchH
Confidence 477 999999999999999754
No 66
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=89.63 E-value=0.19 Score=46.05 Aligned_cols=121 Identities=15% Similarity=0.120 Sum_probs=69.5
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecC--CCccChhhhcCCce
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKN--SKVKSLEELKGLKS 204 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~--s~~~~l~dLkGkks 204 (458)
+++-+.. +..++++++.+|++|++..... +...+.-.+. ...-|. ....+.+|+++ +.+.+++||+|||.
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~--~s~p~~---~~~~~~~~~~~~~~~i~~~~dL~g~~i 153 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVS--KTDERSKVFD--FSTPYY---TAKNKLIVKKSDLATYQSVNDLAQKKV 153 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCB--CCHHHHTTEE--ECSCCE---ECCEEEEEEGGGTTTCSSGGGGC-CEE
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCc--CCHhHhhcee--cccchh---hcceEEEEECCccccccCHHHhCCCeE
Confidence 4666665 8999999999999999763311 1111111110 000010 01345667776 67899999999999
Q ss_pred eeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhccc
Q psy11925 205 CHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKS 283 (458)
Q Consensus 205 Chtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~e 283 (458)
+-. .|+.. -..|.+.. + .- .+ ..+. ++. +++.|..
T Consensus 154 ~~~-----~g~~~-~~~l~~~~--~--~~----~~-~~~~-----------------------------~~~~~~~~l~~ 189 (269)
T 4i62_A 154 GAQ-----KGSIQ-ETMAKDLL--Q--NS----SL-VSLP-----------------------------KNGNLITDLKS 189 (269)
T ss_dssp EEE-----TTSHH-HHHHHHHC--T--TS----EE-EEES-----------------------------CHHHHHHHHHT
T ss_pred EEe-----cCchH-HHHHHHhC--C--CC----cE-EecC-----------------------------CHHHHHHHHHc
Confidence 863 23332 11222211 0 00 00 0111 255 9999999
Q ss_pred CCCcEEEEechhhhhh
Q psy11925 284 GDGDVAFIKQVKVNKA 299 (458)
Q Consensus 284 g~GDVAFvk~~tv~~~ 299 (458)
|..|++++...++...
T Consensus 190 g~vDa~~~~~~~~~~~ 205 (269)
T 4i62_A 190 GQVDAVIFEEPVAKGF 205 (269)
T ss_dssp TSSSEEEEEHHHHHHH
T ss_pred CCCCEEEeChHHHHHH
Confidence 9999999988877654
No 67
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=89.00 E-value=0.26 Score=48.36 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=64.3
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEec---c-CCCceEEEEEeecCCcceEEEEEEecCCCccChhhh-c
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVLGR---K-NLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEEL-K 200 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~---~-~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dL-k 200 (458)
-.|+-+.-+++.+.++++.+|++|+..+....++.+. + ...|++|... +... .++ . ++.+++++|| +
T Consensus 65 ~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~~~~~l~~~~~~~~g~~l~~v~~~-~~~p---~g~--y--s~~iksl~DL~~ 136 (295)
T 1p99_A 65 IDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTT-VLAP---LGI--Y--SDKIKDVKKVKD 136 (295)
T ss_dssp CCEEEEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHHHHHCTTCCEEEEEEE-EECC---CEE--E--CSSCSCGGGCCT
T ss_pred CeEEEEEeCChHHHHHHHHcCCCCEEccCCHHHHHHHHHhcCCCCEEEEEee-cccc---cee--e--cCCCCChHHcCC
Confidence 3688899999999999999999999987666554432 2 4567766433 2211 111 1 2568999999 9
Q ss_pred CCceeeCCCCCCCchHHHHHHHHHcCCCC
Q psy11925 201 GLKSCHTAYMRTTGWVAPVYNLLEKGLIK 229 (458)
Q Consensus 201 GkksChtg~~~taGw~~Pv~~L~~~~~i~ 229 (458)
|||...+.-.++.+. -+..|.+.|+|.
T Consensus 137 Gk~IAip~~~s~~~~--~l~lL~~~Gli~ 163 (295)
T 1p99_A 137 GAKVVIPNDVSNQAR--ALKLLEAAGLIK 163 (295)
T ss_dssp TCEEEEECSHHHHHH--HHHHHHHTTSCE
T ss_pred CCEEEecCCCcHHHH--HHHHHHHCCCcc
Confidence 999999875433333 244566788864
No 68
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=87.92 E-value=0.11 Score=49.20 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=44.0
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEE--EeecCCcceEEEEEEecCCCccChhhhcCCce
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILK--EKYGNEKDLLAVAVVNKNSKVKSLEELKGLKS 204 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~--E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkks 204 (458)
.++-+ ..+..+.++++.+|++|++..+... +.. ..-+ .+++. -.+... ..+| +|++++ +||||||.
T Consensus 39 ~ve~~-~~~~~~~~~~l~~G~~D~~~~~~~~-~~~-~~~~-~~~~~~~~~~~~~--~~~v-lv~~~~-----~DLkGK~I 106 (280)
T 1zbm_A 39 EIEHV-IEDIETLNRKAFNAEYEVTAISAHA-YAL-LDDK-YRILSAGASVGDG--YGPV-VVAKSE-----ISLDGKRI 106 (280)
T ss_dssp EEEEE-ECCHHHHHHHGGGTCCSEEEEEHHH-HTT-STTT-EEECSSCCEEESS--CCCE-EEESSC-----CCCTTCEE
T ss_pred eEEEE-eCCHHHHHHHHHcCCCCEEEECHHH-HHH-hcCC-CcEEeeccccCCC--eeEE-EEEcCc-----hhcCCCEE
Confidence 34533 4478999999999999999874332 222 1112 22321 111111 1233 666665 89999999
Q ss_pred eeCCCCCC
Q psy11925 205 CHTAYMRT 212 (458)
Q Consensus 205 Chtg~~~t 212 (458)
..++.+++
T Consensus 107 av~~~~s~ 114 (280)
T 1zbm_A 107 AVPGRYTT 114 (280)
T ss_dssp EESCTTSH
T ss_pred EecCCCcH
Confidence 99866544
No 69
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=87.73 E-value=0.23 Score=46.41 Aligned_cols=72 Identities=22% Similarity=0.311 Sum_probs=44.7
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCC--CccChhhhcCCce
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNS--KVKSLEELKGLKS 204 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s--~~~~l~dLkGkks 204 (458)
+++-+.. +...+++++++|++|++...-. +...+.-.+. ...-|. ....+.+|++++ .+.+++||+|||.
T Consensus 64 ~v~~~~~-~~~~~~~~l~~G~~D~~~~~~~--~t~~r~~~~~--fs~p~~---~~~~~l~~~~~~~~~i~~~~dL~g~~i 135 (271)
T 2iee_A 64 KVEFKEM-GIDGMLTAVNSGQVDAAANDID--VTKDREEKFA--FSTPYK---YSYGTAIVRKDDLSGIKTLKDLKGKKA 135 (271)
T ss_dssp EEEEEEC-CSTTHHHHHHHTSSSEECSSCB--CCHHHHTTEE--ECCCSE---EEEEEEEECTTTGGGCSSGGGGTTCEE
T ss_pred eEEEEEC-CHHHHHHHHHCCCcCEEEeCCc--CChhhccceE--Eeecce---eCCeEEEEECCCCCCCCCHHHhCCCEE
Confidence 4554444 7789999999999999874311 1222211110 111010 015577888887 5889999999998
Q ss_pred ee
Q psy11925 205 CH 206 (458)
Q Consensus 205 Ch 206 (458)
+-
T Consensus 136 ~v 137 (271)
T 2iee_A 136 AG 137 (271)
T ss_dssp ES
T ss_pred EE
Confidence 75
No 70
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=87.59 E-value=0.74 Score=42.24 Aligned_cols=65 Identities=14% Similarity=0.258 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHcCCccEEEeCCcceEEecc--CCCc-eEEEEEeecCCcce-EEEEEEecCCCccChhhhcCCceeeC
Q psy11925 134 KSSKVCLKLIADGAADVITLDATEAVLGRK--NLNL-RPILKEKYGNEKDL-LAVAVVNKNSKVKSLEELKGLKSCHT 207 (458)
Q Consensus 134 ~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~--~~~L-~pil~E~y~~~~~~-~aVAVVkk~s~~~~l~dLkGkksCht 207 (458)
.+...++..+++|++|++.-. -.++..| .+.. .|.+. .. ..+.+.++++.+.+++||+|||.+-.
T Consensus 56 ~~~~~~~~~l~~g~~D~~~~~--~~~t~eR~~~~~fs~p~~~-------~~~~~~~~~~~~~~~~~~~dL~g~~v~v~ 124 (243)
T 4gvo_A 56 MDFSNLLVSLGAGKVDIVAHQ--MEKSKEREKKFLFNDVAYN-------NFPLQLTVLDSNNSINSTKDLAGKRVITS 124 (243)
T ss_dssp CCGGGHHHHHHTTSCSEECSC--CBCCHHHHHHSEECSSCCE-------ECCEEEEEETTCCSCSSGGGGTTCEEEEC
T ss_pred CCHHHHHHHHHCCCCCEeccc--CCCCHHHhhhhhhhhhhcc-------cccceEEEeccccccCchHHhcCCeEEEe
Confidence 457899999999999987521 1111111 1111 11110 01 33333344567899999999999763
No 71
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=87.23 E-value=0.36 Score=45.51 Aligned_cols=121 Identities=14% Similarity=0.100 Sum_probs=70.9
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCH 206 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksCh 206 (458)
+++-+.. +..++++++++|++|++..... +...+.-.+. ..+-|. ....+.|+++++++++++||+|||.+-
T Consensus 87 ~~~~~~~-~~~~~~~~l~~G~~D~~~~~~~--~~~~r~~~~~--~s~p~~---~~~~~~~~~~~~~i~~~~dL~g~~i~~ 158 (292)
T 1xt8_A 87 KVQFVLV-EAANRVEFLKSNKVDIILANFT--QTPQRAEQVD--FCSPYM---KVALGVAVPKDSNITSVEDLKDKTLLL 158 (292)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCB--CCHHHHTTEE--ECCCCE---EEEEEEEEETTCCCCSSGGGTTSEEEE
T ss_pred eEEEEEc-CHHHHHHHHhCCCeeEEeecCC--CCcchhccee--eeccce---ecceEEEEECCCCCCCHHHhCCCEEEE
Confidence 4555554 3689999999999999853221 1221211111 111010 014567888888899999999999876
Q ss_pred CCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCC
Q psy11925 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGD 285 (458)
Q Consensus 207 tg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~ 285 (458)
. .|+... ..|.+.. + +- .+ ..+. ++. +++.|.+|.
T Consensus 159 ~-----~g~~~~-~~l~~~~--~--~~----~~-~~~~-----------------------------~~~~~~~~L~~G~ 194 (292)
T 1xt8_A 159 N-----KGTTAD-AYFTQNY--P--NI----KT-LKYD-----------------------------QNTETFAALMDKR 194 (292)
T ss_dssp E-----TTSHHH-HHHHHHC--T--TS----EE-EEES-----------------------------SHHHHHHHHHTTS
T ss_pred e-----CCCcHH-HHHHHhC--C--Cc----eE-EEcC-----------------------------CHHHHHHHHHcCC
Confidence 3 233332 2233221 0 00 01 0111 245 999999999
Q ss_pred CcEEEEechhhhhh
Q psy11925 286 GDVAFIKQVKVNKA 299 (458)
Q Consensus 286 GDVAFvk~~tv~~~ 299 (458)
.|++++....+...
T Consensus 195 vDa~~~~~~~~~~~ 208 (292)
T 1xt8_A 195 GDALSHDNTLLFAW 208 (292)
T ss_dssp SSEEEEEHHHHHHH
T ss_pred ccEEEecHHHHHHH
Confidence 99999988776654
No 72
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=83.50 E-value=0.37 Score=44.29 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEEEeecCCcceEEEEEEecCCCccChhhhcCCc
Q psy11925 133 EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLK 203 (458)
Q Consensus 133 ~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkk 203 (458)
..+...++..+++|++|++.-.- .++..|.-.+ .|++. ...+.++++++++.+++||+||+
T Consensus 68 ~~~~~~~~~~l~~g~~D~~~~~~--~~t~eR~~~~~fs~py~~--------~~~~~~~~~~~~i~~~~dL~g~~ 131 (259)
T 3g3k_A 68 NGQWNGMVRELIDHKADLAVAPL--AITYVREEVIDFSKPFMT--------LGISILYRKGTPIDSADDLAKQT 131 (259)
T ss_dssp TCCBCHHHHHHHTTSCSEECSSC--BCCHHHHTTEEECSCSEE--------ECEEEEEESSSSCCSHHHHHTCS
T ss_pred CCcchHHHHHHhcCcccEEEeee--EecccccceEeeeeeeee--------CCEEEEEeCCccccCHHHhccCC
Confidence 35789999999999999985321 1111121111 12211 14566788888899999999998
No 73
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=83.04 E-value=0.47 Score=42.75 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=67.3
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEEEeecCCcceEEEEEEecCC--CccChhhhc-
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILKEKYGNEKDLLAVAVVNKNS--KVKSLEELK- 200 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~E~y~~~~~~~aVAVVkk~s--~~~~l~dLk- 200 (458)
+++-+.. +...+++++++|++|++...-. +...+.-.+ .|++. ...+.+|++++ .+.+++||+
T Consensus 55 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~t~~r~~~~~fs~p~~~--------~~~~~~~~~~~~~~i~~~~dL~~ 123 (239)
T 3kbr_A 55 KLVVVPT-SWPNLMRDFADDRFDIAMSGIS--INLERQRQAYFSIPYLR--------DGKTPITLCSEEARFQTLEQIDQ 123 (239)
T ss_dssp EEEEEEC-CTTTHHHHHHTTCCSEECSSCB--CCHHHHTTCEECSCSEE--------ECEEEEEEGGGGGGGSSHHHHSS
T ss_pred ceEEEEe-CHHHHHHHHHCCCcCEEEeCCc--CCHHHcCccccchHHhc--------cCcEEEEECCcccccCCHHHhcC
Confidence 3444444 7899999999999999854321 111111111 12111 13456677765 678999999
Q ss_pred -CCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hh
Q psy11925 201 -GLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PL 278 (458)
Q Consensus 201 -GkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~ 278 (458)
|++.+-. .|+...- .|.+. .+ .- .+ ..| + .+. ++
T Consensus 124 ~g~~v~~~-----~g~~~~~-~l~~~--~~--~~----~~-~~~------~-----------------------~~~~~~ 159 (239)
T 3kbr_A 124 PGVTAIVN-----PGGTNEK-FARAN--LK--KA----RI-LVH------P-----------------------DNVTIF 159 (239)
T ss_dssp TTCEEEEC-----TTSHHHH-HHHHH--CS--SS----EE-EEC------C-----------------------CTTTHH
T ss_pred CCcEEEEc-----CCCcHHH-HHHHh--CC--CC----ce-EEe------C-----------------------CHHHHH
Confidence 7788763 2333221 22221 11 00 01 011 1 234 89
Q ss_pred hhcccCCCcEEEEechhhhhh
Q psy11925 279 QCLKSGDGDVAFIKQVKVNKA 299 (458)
Q Consensus 279 rCL~eg~GDVAFvk~~tv~~~ 299 (458)
+.|..|..|++++...++...
T Consensus 160 ~~l~~grvDa~~~~~~~~~~~ 180 (239)
T 3kbr_A 160 QQIVDGKADLMMTDAIEARLQ 180 (239)
T ss_dssp HHHHTTSCSEEEEEHHHHHHH
T ss_pred HHHHcCCcCEEEEchHHHHHH
Confidence 999999999999988776654
No 74
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=82.93 E-value=0.33 Score=43.70 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=69.3
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCcc-ChhhhcCCcee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVK-SLEELKGLKSC 205 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~-~l~dLkGkksC 205 (458)
+++-+.. +...+++++++|++|++..... +...+.-.+ ...+-|.. ...+.|+++++++. +++||+||+.+
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~t~~r~~~~--~~s~p~~~---~~~~l~~~~~~~~~~~~~dL~g~~v~ 115 (239)
T 1lst_A 44 KCTWVAS-DFDALIPSLKAKKIDAIISSLS--ITDKRQQEI--AFSDKLYA---ADSRLIAAKGSPIQPTLESLKGKHVG 115 (239)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCB--CCHHHHHHC--EECSCSBC---CCEEEEEETTCCCCSSHHHHTTCEEE
T ss_pred eEEEEeC-CHHHHHHHHhCCCCCEEEECcC--cCHHHhhce--eeccccee---CceEEEEeCCCCCCCCHHHhCCCEEE
Confidence 3444444 7899999999999999864211 111111011 00111110 15577888888875 89999999988
Q ss_pred eCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccC
Q psy11925 206 HTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSG 284 (458)
Q Consensus 206 htg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg 284 (458)
.. .|+... ..|.+.. -. ... .+. .+. .+. +++.|..|
T Consensus 116 ~~-----~g~~~~-~~l~~~~-~~-~~~----~~~-~~~-----------------------------~~~~~~~~l~~G 153 (239)
T 1lst_A 116 VL-----QGSTQE-AYANDNW-RT-KGV----DVV-AYA-----------------------------NQDLIYSDLTAG 153 (239)
T ss_dssp EE-----TTSHHH-HHHHHHT-GG-GTC----EEE-EES-----------------------------SHHHHHHHHHTT
T ss_pred EE-----cCccHH-HHHHHhc-cc-CCC----eEE-EcC-----------------------------CHHHHHHHHHcC
Confidence 63 344332 1222210 00 000 000 111 245 99999999
Q ss_pred CCcEEEEechhhhh
Q psy11925 285 DGDVAFIKQVKVNK 298 (458)
Q Consensus 285 ~GDVAFvk~~tv~~ 298 (458)
..|++++...++..
T Consensus 154 ~vDa~~~~~~~~~~ 167 (239)
T 1lst_A 154 RLDAALQDEVAASE 167 (239)
T ss_dssp SCSEEEEEHHHHHH
T ss_pred CCCEEEeCcHHHHH
Confidence 99999998776543
No 75
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=82.58 E-value=8.8 Score=34.80 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCC--CccChhhhcCCceeeCCCCC
Q psy11925 134 KSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNS--KVKSLEELKGLKSCHTAYMR 211 (458)
Q Consensus 134 ~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s--~~~~l~dLkGkksChtg~~~ 211 (458)
.+...++.++++|++|++... -.++..|.-.+ ...+-|-. ...+.+|++++ .+.+++||+||+.+-.
T Consensus 61 ~~~~~~~~~l~~g~~d~~~~~--~~~t~eR~~~~--~fs~py~~---~~~~~~v~~~~~~~~~~~~dl~g~~i~v~---- 129 (243)
T 4h5g_A 61 MSFDNVLTSLQTGKADLAVAG--ISATDERKEVF--DFSIPYYE---NKISFLVHKADVEKYKDLTSLESANIAAQ---- 129 (243)
T ss_dssp CCGGGHHHHHHTTSCSEECSS--CBCCHHHHTTE--EECSCSBC---CCEEEEEEGGGTTTCCSHHHHHTSEEEEE----
T ss_pred ccHHHHHHHHHcCCCCccccc--ccCChhHccEE--EccCcccc---CcccccccccccccccccccCCCCEEEec----
Confidence 457899999999999987632 11122121111 01111111 12344555543 4678999999998763
Q ss_pred CCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCCCcEEE
Q psy11925 212 TTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGDGDVAF 290 (458)
Q Consensus 212 taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~GDVAF 290 (458)
.|+.. ...|.+.. + .. .+. .|. ... +|+.|..|..|+++
T Consensus 130 -~g~~~-~~~l~~~~--~--~~----~i~-~~~-----------------------------~~~~~~~~l~~GrvD~~~ 169 (243)
T 4h5g_A 130 -KGTVP-ESMVKEQL--P--KA----QLT-SLT-----------------------------NMGEAVNELQAGKIDAVH 169 (243)
T ss_dssp -TTSHH-HHHHHHHC--T--TS----EEE-EES-----------------------------CHHHHHHHHHHTSCSEEE
T ss_pred -CCcHH-HHHHHHhc--c--cc----eeE-EeC-----------------------------CHHHHHHHHHcCCccEEE
Confidence 34432 22333321 1 00 010 111 244 99999999999999
Q ss_pred Eechhhhhh
Q psy11925 291 IKQVKVNKA 299 (458)
Q Consensus 291 vk~~tv~~~ 299 (458)
+...+...+
T Consensus 170 ~d~~~~~~~ 178 (243)
T 4h5g_A 170 MDEPVALSY 178 (243)
T ss_dssp EEHHHHHHH
T ss_pred ecHHHHHHH
Confidence 887665543
No 76
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=80.42 E-value=1.5 Score=43.68 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=22.6
Q ss_pred EEEEEecCCCccChhhhcCCceeeCC
Q psy11925 183 AVAVVNKNSKVKSLEELKGLKSCHTA 208 (458)
Q Consensus 183 aVAVVkk~s~~~~l~dLkGkksChtg 208 (458)
...||+++++|++++||||||...+.
T Consensus 101 ~~i~v~~ds~I~s~~DLkGk~Igv~~ 126 (365)
T 2de3_A 101 QGFFVRDDSPITAAADLAGRRIGVSA 126 (365)
T ss_dssp EEEEEETTCSCCSGGGGTTCEEEECH
T ss_pred ceEEECCCCCCCCHHHhCCCeEEeec
Confidence 34567999999999999999999876
No 77
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=80.29 E-value=0.75 Score=42.32 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=41.6
Q ss_pred CHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceeeCC
Q psy11925 135 SSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTA 208 (458)
Q Consensus 135 s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksChtg 208 (458)
+...++.++++|++|++... -.+...+.-.+ .|++. ...+.||++++++.+++||+||+.+.-|
T Consensus 70 ~~~~~~~~l~~g~~D~~~~~--~~~t~~R~~~~~fs~p~~~--------~~~~~~~~~~~~i~~~~dL~g~~~~~ig 136 (263)
T 1mqi_A 70 IWNGMVGELVYGKADIAIAP--LTITLVREEVIDFSKPFMS--------LGISIMIKKGTPIESAEDLSKQTEIAYG 136 (263)
T ss_dssp CBCHHHHHHHTTSCSEECSS--CBCCHHHHTTEEECSCSEE--------ECEEEEEETTCSCCSHHHHHTCSSSEEE
T ss_pred CcHHHHHHHHcCCcCEEEEe--eEecHHHHhhcccccceec--------ccEEEEEcCccccCCHHHHhcccCeeEE
Confidence 68899999999999998622 11122121111 12111 1456788998889999999999966533
No 78
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=78.93 E-value=3.7 Score=41.98 Aligned_cols=129 Identities=14% Similarity=0.058 Sum_probs=78.0
Q ss_pred CeEEEecCCHHHHHHHHHcCC----ccEEEeCCcceEEec-------cCCCceEEEEEeecCCcceEEEEEEecC---CC
Q psy11925 127 PFECNREKSSKVCLKLIADGA----ADVITLDATEAVLGR-------KNLNLRPILKEKYGNEKDLLAVAVVNKN---SK 192 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~----AD~~~ld~~~~y~A~-------~~~~L~pil~E~y~~~~~~~aVAVVkk~---s~ 192 (458)
.|+-+...+..+.++++..|+ +|++.+.+.-.+.+. +...++.++.. +.. ..+ .+|+++ +.
T Consensus 67 ~Vel~~~~s~~~~~~al~~G~~~~~~D~a~~~~~~~~~~~~g~~~~~~g~~~~~v~~~-~~~---g~~-i~v~~~~~~s~ 141 (429)
T 2i49_A 67 GVEVSKQANWASARDNVTIGSQGGGIDGGQWQMPMPHLITEGIITNGNKVPMYVLAQL-ITQ---GNG-IAVAPMHEGKG 141 (429)
T ss_dssp EEEEEECSSHHHHHHHHHHTGGGTSCSEEEECTTHHHHHHTTTTTTTCCCCEEEEEEC-CBC---CEE-EEECGGGTTTT
T ss_pred eeEEEEcCCHHHHHHHHHcCCCCCceeEEEeccHHHHHHHcCccccCCCCCEEEEEEe-ccC---CcE-EEEecchhhcc
Confidence 677788888999999999999 999988444333321 12233333322 111 134 445554 46
Q ss_pred ccC--------hhhh-c--CC--ceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCC
Q psy11925 193 VKS--------LEEL-K--GL--KSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDA 259 (458)
Q Consensus 193 ~~~--------l~dL-k--Gk--ksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~ 259 (458)
+.+ ++|| | || |...+..+++. ..+....|.+.|+-+..+- + +-. +|
T Consensus 142 i~~~~~~lk~~i~dL~k~~GK~~~Iav~~~gs~~-~~~l~~~L~~~Gl~p~~DV---~----~v~----~~--------- 200 (429)
T 2i49_A 142 VNLDITKAADYIKGFNKTNGRKFKAAHTFPNVNQ-DFWIRYWFAAGGVDPDTDI---D----LLA----VP--------- 200 (429)
T ss_dssp CSSCCGGGHHHHHTHHHHHSSCCEEEESSTTSHH-HHHHHHHHHHTTCCTTTTS---E----EEE----CC---------
T ss_pred cccchHHHHHHHHHHHHhCCCCcEEEEeCCCCHH-HHHHHHHHHhcCCCCCCcE---E----EEE----CC---------
Confidence 655 6999 9 99 99988776553 3333445666675331111 1 110 11
Q ss_pred CchhhhhCCCCCCCChh-hhhhcccCCCcEEEEechhh
Q psy11925 260 PASLEKICPKATRVTYT-PLQCLKSGDGDVAFIKQVKV 296 (458)
Q Consensus 260 ~~~LC~lC~g~~~CGy~-A~rCL~eg~GDVAFvk~~tv 296 (458)
.. +...|.+|..|.+++..-..
T Consensus 201 ---------------~~~~~~aL~~G~iDa~~~~eP~~ 223 (429)
T 2i49_A 201 ---------------PAETVQGMRNGTMDAFSTGDPWP 223 (429)
T ss_dssp ---------------HHHHHHHHHHTCCCEEEEETTHH
T ss_pred ---------------hHHHHHHHHcCCccEEEeccchH
Confidence 22 67788999999999875443
No 79
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=77.78 E-value=2.2 Score=40.59 Aligned_cols=74 Identities=14% Similarity=0.041 Sum_probs=45.5
Q ss_pred CCeEEEe-cCCHHHHHHHHHcCCccEEEe---------CC---------cceEEecc-----CCCceEEEEEeecCCcce
Q psy11925 126 PPFECNR-EKSSKVCLKLIADGAADVITL---------DA---------TEAVLGRK-----NLNLRPILKEKYGNEKDL 181 (458)
Q Consensus 126 p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~l---------d~---------~~~y~A~~-----~~~L~pil~E~y~~~~~~ 181 (458)
-.++-+. -.+...++++|.+|++|+..- .+ .++|.+.+ ..+|+-+-.-.++ ..
T Consensus 34 ~~Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~- 110 (275)
T 1sw5_A 34 YKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFR--DD- 110 (275)
T ss_dssp CCEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEE--CC-
T ss_pred CcEEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCC--Ce-
Confidence 3566665 346899999999999999862 11 11333211 1356544332221 11
Q ss_pred EEEEEEecCC----CccChhhhcCCc
Q psy11925 182 LAVAVVNKNS----KVKSLEELKGLK 203 (458)
Q Consensus 182 ~aVAVVkk~s----~~~~l~dLkGkk 203 (458)
++++| ++++ ++++++||+||+
T Consensus 111 ~~l~V-~~~~a~~~~i~si~DL~g~~ 135 (275)
T 1sw5_A 111 YALAV-RADWAEENGVEKISDLAEFA 135 (275)
T ss_dssp EEEEE-EHHHHHHHTCCBGGGGTTTG
T ss_pred eEEEE-eHHHHHHcCCCcHHHHHhhh
Confidence 67655 5555 799999999993
No 80
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=77.32 E-value=2.6 Score=40.36 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=67.9
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEe---ccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhc-C
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVLG---RKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELK-G 201 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A---~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLk-G 201 (458)
-.++-+.-+++.+-.+++.+|+.|+..+....+..+ .+.++|++|..-.+. -+++. +..+++++||+ |
T Consensus 31 i~veiv~F~dy~~pN~AL~~G~iD~n~fQh~pyl~~~~k~~g~~Lv~v~~~~~~------p~glY--S~kiksl~dL~~G 102 (246)
T 4ef1_A 31 VKLEVTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLE------PVGLY--SKKYKSLQEIPDG 102 (246)
T ss_dssp EEEEEEECSSSSHHHHHHHHTSCSEEEEEEHHHHHHHHHHHTCCEEEEEEEEEC------CCEEE--CSSCSSGGGSCTT
T ss_pred CEEEEEEeCCchhHHHHHHCCCCCEEecCCHHHHHHHHHHCCCCEEEEeecccc------ceEEe--cCCCCCHHHcCCC
Confidence 368888888999999999999999999876655442 345788888653321 12222 34689999998 9
Q ss_pred CceeeCCCCCCCchHHHHHHHHHcCCCC
Q psy11925 202 LKSCHTAYMRTTGWVAPVYNLLEKGLIK 229 (458)
Q Consensus 202 kksChtg~~~taGw~~Pv~~L~~~~~i~ 229 (458)
++..-+.-. +....-+..|.+.|+|.
T Consensus 103 a~IAIpnd~--sn~~RaL~lL~~~GLI~ 128 (246)
T 4ef1_A 103 STIYVSSSV--SDWPRVLTILEDAGLIT 128 (246)
T ss_dssp CEEEEESCG--GGHHHHHHHHHHTTSEE
T ss_pred CEEEeecCC--chHHHHHHHHHHCCCee
Confidence 999986554 44444566777889874
No 81
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=73.45 E-value=3.2 Score=39.92 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=62.2
Q ss_pred CceEEEeCChhHHhHHHHHHHH-HhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEe---CC--cceEEeccCCCceEE
Q psy11925 97 KPIRWCVSSPEGMSKCLAFKDA-AFSRDIRPPFECNREKSSKVCLKLIADGAADVITL---DA--TEAVLGRKNLNLRPI 170 (458)
Q Consensus 97 ~~vrwCv~s~~E~~KC~~l~~~-~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~l---d~--~~~y~A~~~~~L~pi 170 (458)
.+|++=...-.|..-=..|... ....|. +++=+.. +.....++|.+|++|+..- +. ..+|...+ .+|+-+
T Consensus 16 ~~I~Ig~~~~te~~i~~~i~~~~Le~~G~--~Ve~~~~-~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~-~~l~~l 91 (280)
T 3tmg_A 16 KSVKIGYVNWGGETAATNVLKVVFEKMGY--NAEIFSV-TTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLK-TKFVDL 91 (280)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHHHTTE--EEEEEEC-CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHG-GGEEEE
T ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHCCC--ceEEEEC-CcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhc-CcEEEc
Confidence 3577765554444322223222 222333 3444554 5688999999999999753 22 12332211 134332
Q ss_pred EEEeecCCcceEEEEEEecCCCccChhhhcCCceeeCC--CCCCCchH
Q psy11925 171 LKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTA--YMRTTGWV 216 (458)
Q Consensus 171 l~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksChtg--~~~taGw~ 216 (458)
...+. +. .|+++| ++.++++|++||++++.=+.| +++..||.
T Consensus 92 -~~~~~-~~-~~~l~V-~~~~~i~sisDL~~~~~~f~~~~~g~~~G~~ 135 (280)
T 3tmg_A 92 -GANYE-GT-IQGFVV-PSYVPISSISELKGKGDKFKNKMIGIDAGAG 135 (280)
T ss_dssp -EEEEE-EE-EEEEEE-ETTSCCCBGGGGTTCGGGGTTEEECCSTTCH
T ss_pred -cccCC-Cc-eEEEEE-CCCCCCCCHHHHHhhHHHcCCeEEecCCCch
Confidence 22221 11 166666 667789999999998754433 46677885
No 82
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=71.92 E-value=3.4 Score=39.74 Aligned_cols=94 Identities=18% Similarity=0.142 Sum_probs=66.5
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEE---eccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhc-C
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVL---GRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELK-G 201 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~---A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLk-G 201 (458)
-.++-+.-+++.+..+++.+|+.|+-.+.-..+.. ..+.++|++|..-.... . ++. +..+++++||+ |
T Consensus 38 i~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~~k~~g~~lv~v~~~~~~p----~--gly--S~kiksl~dLk~G 109 (252)
T 4ib2_A 38 YQLEVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGTHLVDAGDIHYEP----F--GIY--PGTKKSLDEISEG 109 (252)
T ss_dssp CEEEEEECSSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHHCCCEEEEEEEEECC----C--EEE--ESSCSCGGGCCTT
T ss_pred CeEEEEEecChhhHHHHHHcCCcCeeecCCHHHHHHHHHHCCCCEEEEeeccccc----e--Eee--cCCcCCHHHcCCC
Confidence 36888999999999999999999999877664432 23457888875433211 1 222 24588999999 9
Q ss_pred CceeeCCCCCCCchHHHHHHHHHcCCCC
Q psy11925 202 LKSCHTAYMRTTGWVAPVYNLLEKGLIK 229 (458)
Q Consensus 202 kksChtg~~~taGw~~Pv~~L~~~~~i~ 229 (458)
++..-+.- ++..-.-+..|.+.|+|.
T Consensus 110 a~IAipnd--~sN~~RaL~lL~~aGLIk 135 (252)
T 4ib2_A 110 DKIAVPND--TTNEARALLLLQDNGIIT 135 (252)
T ss_dssp CEEEEECS--HHHHHHHHHHHHHTTSCE
T ss_pred CEEEeeCC--CCHHHHHHHHHHHCCCEE
Confidence 99998654 344444456777889985
No 83
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=68.53 E-value=5 Score=38.97 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=21.3
Q ss_pred CCCeEEEecC---CHHHHHHHHHcCCccEEEeCCc
Q psy11925 125 RPPFECNREK---SSKVCLKLIADGAADVITLDAT 156 (458)
Q Consensus 125 ~p~v~Cv~~~---s~~~Ci~~I~~g~AD~~~ld~~ 156 (458)
+..|+-..+. +..+.+++++.|.+|++...++
T Consensus 31 ~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~ 65 (316)
T 2vpn_A 31 DHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPG 65 (316)
T ss_dssp SCEEEEECTTCC----CHHHHHHTTSCSEEEECHH
T ss_pred eEEEEEecCCCCCChHHHHHHHhCCCceEEeecch
Confidence 3445544432 3489999999999999987643
No 84
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=68.01 E-value=4.8 Score=39.91 Aligned_cols=32 Identities=3% Similarity=-0.031 Sum_probs=24.4
Q ss_pred CCeEEEecC---CHHHHHHHHHcCCccEEEeCCcc
Q psy11925 126 PPFECNREK---SSKVCLKLIADGAADVITLDATE 157 (458)
Q Consensus 126 p~v~Cv~~~---s~~~Ci~~I~~g~AD~~~ld~~~ 157 (458)
..|+-..+. +..+.+++++.|.+|++...++.
T Consensus 66 v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~ 100 (365)
T 2hzl_A 66 FQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYY 100 (365)
T ss_dssp SEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGG
T ss_pred EEEEEecCCcccCHHHHHHHHHcCccceeecchhh
Confidence 445555443 57899999999999999887653
No 85
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=67.64 E-value=4.5 Score=39.05 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=46.5
Q ss_pred CCCeEEEec---CCHHHHHHHHHcCCccEEEeCCcce---------------E-----------------E-eccCCCce
Q psy11925 125 RPPFECNRE---KSSKVCLKLIADGAADVITLDATEA---------------V-----------------L-GRKNLNLR 168 (458)
Q Consensus 125 ~p~v~Cv~~---~s~~~Ci~~I~~g~AD~~~ld~~~~---------------y-----------------~-A~~~~~L~ 168 (458)
+..|+-..+ -+..+++++++.|.+|++...++.+ + . .-...|++
T Consensus 33 ~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 112 (301)
T 2pfz_A 33 KLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMM 112 (301)
T ss_dssp SCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTSCCSHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred eEEEEEccCcccCChHHHHHHHHCCceeeEechhhhccccCchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 344554443 2458999999999999998765421 0 0 00235677
Q ss_pred EEEEEeecCCcceEEEEEEecCCCccChhhhcCCceeeC
Q psy11925 169 PILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHT 207 (458)
Q Consensus 169 pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksCht 207 (458)
++..-.++ . +. ++. +.++++++||||+|.--+
T Consensus 113 ~l~~~~~~--~--~~--~~~-~~pI~s~~DlkG~KiR~~ 144 (301)
T 2pfz_A 113 LLYSVAWP--P--QG--IFA-NRDIKQVSDMKGLKWRAY 144 (301)
T ss_dssp EEEEEECC--C--CE--EEE-SSCCSSGGGGTTCEEEES
T ss_pred EEEecccC--C--cc--eee-CCCCCChHHhcCCEEecC
Confidence 66442111 1 22 222 458999999999998553
No 86
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=65.44 E-value=6 Score=38.10 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=45.5
Q ss_pred CCeEEEecC---CHHHHHHHHHcCCccEEEeCCcce-------------EE--------------------eccCCCceE
Q psy11925 126 PPFECNREK---SSKVCLKLIADGAADVITLDATEA-------------VL--------------------GRKNLNLRP 169 (458)
Q Consensus 126 p~v~Cv~~~---s~~~Ci~~I~~g~AD~~~ld~~~~-------------y~--------------------A~~~~~L~p 169 (458)
..|+-..+. +..+++++++.|.+|++...++.+ |. .-...|+++
T Consensus 35 i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 114 (301)
T 2pfy_A 35 LEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFLASSFNESEKLWKATRPLLAQRLDKQGIVL 114 (301)
T ss_dssp EEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred EEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhhhccCcccccccCCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEE
Confidence 345444432 458999999999999998765421 00 002246665
Q ss_pred EEEEeecCCcceEEEEEEecCCCccChhhhcCCceeeC
Q psy11925 170 ILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHT 207 (458)
Q Consensus 170 il~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksCht 207 (458)
+..-.++ . +. ++. +.++++++||||+|.--+
T Consensus 115 l~~~~~~--~--~~--~~~-~~pI~s~~DlkG~KiR~~ 145 (301)
T 2pfy_A 115 VYGSPWP--P--QG--IYT-KKPVAALADLKGTRFRAY 145 (301)
T ss_dssp EEEEECC--C--CE--EEE-SSCCSSGGGGTTCEEEEC
T ss_pred EEeecCC--C--cc--eec-CCCCCCHHHhCCCEEeec
Confidence 5432221 1 22 222 358999999999998553
No 87
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=64.27 E-value=1.8 Score=39.51 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCce
Q psy11925 133 EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKS 204 (458)
Q Consensus 133 ~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkks 204 (458)
..+...+++++++|++|++... -.+...+.-.+. ...-|. ....+.+|++++++.+++||+ |+.
T Consensus 64 ~~~~~~~~~~l~~g~~D~~~~~--~~~t~~R~~~~~--fs~p~~---~~~~~~~~~~~~~i~~~~dL~-~~v 127 (265)
T 2v3u_A 64 DGTWNGLVGELVFKRADIGISA--LTITPDRENVVD--FTTRYM---DYSVGVLLRRGTSIQSLQDLS-KQT 127 (265)
T ss_dssp TSCBCHHHHHHHTTSCSEECSS--CBCCHHHHTTEE--ECSCSE---EECEEEEEETTCCCCSHHHHH-TCS
T ss_pred CCCcchHHHHHHcCCcCeEEee--eEeehhhhcccc--ccceee---eccEEEEEECCCCccchhhhh-hhh
Confidence 3567899999999999998622 112222211110 000010 014567789988899999999 554
No 88
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=63.21 E-value=45 Score=30.83 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=59.1
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEec-CCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNRE-KSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKE 173 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~-~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E 173 (458)
..+++|+.+.......--..+-..+.. ..|.++.... .+..+.++.+.+|++|+++........ ......+|+..+
T Consensus 90 ~~g~l~I~~~~~~~~~~l~~~l~~f~~--~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~-~~~l~~~~L~~~ 166 (305)
T 3fxq_A 90 WEGHITFAASPAIALAALPLALASFAR--EFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDI-DTDLEAQPLYVS 166 (305)
T ss_dssp HHTEEEEEECHHHHHTHHHHHHHHHHH--HCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGS-CTTEEEEEEEEC
T ss_pred CCceEEEEechHHHHHHHHHHHHHHHH--HCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCC-ccCeeEEEeecC
Confidence 456799998876543332222222221 1355444332 356788999999999999864321100 011122333322
Q ss_pred eecCCcceEEEEEEecCCCc---cChhhhcCCceeeCCCCC
Q psy11925 174 KYGNEKDLLAVAVVNKNSKV---KSLEELKGLKSCHTAYMR 211 (458)
Q Consensus 174 ~y~~~~~~~aVAVVkk~s~~---~~l~dLkGkksChtg~~~ 211 (458)
..|.|+.++.+. .+++||.+...-+...+.
T Consensus 167 --------~~~~v~~~~hpla~~~~~~dL~~~~~i~~~~~~ 199 (305)
T 3fxq_A 167 --------DVVIVGQRQHPMANATRLAELQECRWAFSSAPR 199 (305)
T ss_dssp --------CEEEEEETTCTTTTCCSGGGGTTSEEEEECCTT
T ss_pred --------cEEEEEcCCCCCCCCCCHHHHhCCCeEeeCCCC
Confidence 345666776542 478999998877755543
No 89
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=62.99 E-value=7.7 Score=36.98 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=66.3
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEE---eccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhc-C
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVL---GRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELK-G 201 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~---A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLk-G 201 (458)
-.++-+.-+++.+-.+++.+|+.|+-.+.-..+.. ..+.++|++|..-.... . ++. +..+++++||+ |
T Consensus 31 i~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyl~~~~k~~g~~lv~v~~~~~~p----~--glY--S~k~ksl~dL~~G 102 (240)
T 3tqw_A 31 LHVNIITFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKTFVYP----M--GLY--SKKITALTQLKTG 102 (240)
T ss_dssp CCEEEEEESCTTSHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEEEEEEEECC----C--EEE--CSSCSSGGGCCTT
T ss_pred CeEEEEEeCChHhHHHHHHcCCcCeeccCCHHHHHHHHHHCCCCEEEEeeccccc----e--EEe--cCCCCCHHHhcCC
Confidence 36888899999999999999999999876654433 23567888875433211 1 121 35688999999 9
Q ss_pred CceeeCCCCCCCchHHHHHHHHHcCCCC
Q psy11925 202 LKSCHTAYMRTTGWVAPVYNLLEKGLIK 229 (458)
Q Consensus 202 kksChtg~~~taGw~~Pv~~L~~~~~i~ 229 (458)
++..-+.- ++..-.-+..|.+.|+|.
T Consensus 103 a~Iaipnd--~tn~~RaL~lL~~aGLI~ 128 (240)
T 3tqw_A 103 AKIAVPSD--PSNEARALLLLEKAQLIQ 128 (240)
T ss_dssp CEEEEECS--HHHHHHHHHHHHHTTSCE
T ss_pred CEEEEecC--ccHHHHHHHHHHHCCCEE
Confidence 99988654 333444455678889985
No 90
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=60.99 E-value=79 Score=29.57 Aligned_cols=100 Identities=11% Similarity=-0.029 Sum_probs=54.1
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKE 173 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E 173 (458)
.. ++|+.+.......--..+-..+... -|.+.-.. ..+..+.++.+.+|++|+++..+.. ....+..+|+..|
T Consensus 89 ~~-~l~Ig~~~~~~~~~l~~~l~~f~~~--~P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~~~~L~~~ 162 (313)
T 2h98_A 89 SQ-TLRIGYVSSLLYGLLPEIIYLFRQQ--NPEIHIELIECGTKDQINALKQGKIDLGFGRLKI---TDPAIRRIMLHKE 162 (313)
T ss_dssp CC-EEEEEECGGGGGTTHHHHHHHHHHH--CTTSEEEEEECCHHHHHHHHHHTSCSEEEESSCC---CCTTEEEEEEEEE
T ss_pred Cc-EEEEEechHhHHhHHHHHHHHHHHH--CCCeEEEEEeCChHHHHHHHHcCCCCEEEEeCCC---CCCCeeEEEeeeC
Confidence 44 7999877654322211211111111 25443332 3356899999999999999875432 1112222344333
Q ss_pred eecCCcceEEEEEEecCCC------c-cChhhhcCCceeeCC
Q psy11925 174 KYGNEKDLLAVAVVNKNSK------V-KSLEELKGLKSCHTA 208 (458)
Q Consensus 174 ~y~~~~~~~aVAVVkk~s~------~-~~l~dLkGkksChtg 208 (458)
..+.|+.++.+ . .+++||.+...-...
T Consensus 163 --------~~~~v~~~~hpl~~~~~~~i~~~dL~~~~~i~~~ 196 (313)
T 2h98_A 163 --------QLKLAIHKHHHLNQFAATGVHLSQIIDEPMLLYP 196 (313)
T ss_dssp --------EEEEEEETTSGGGGGTTSCBCGGGGTTSCEEECC
T ss_pred --------cEEEEEcCCCcccccCCCCcCHHHHcCCCEEEec
Confidence 33455565532 1 478999988776643
No 91
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=60.40 E-value=73 Score=26.93 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=55.5
Q ss_pred CCceEEEeCChhHHhHHHHHHHHHhcCCCCCC--eEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEE
Q psy11925 96 IKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPP--FECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKE 173 (458)
Q Consensus 96 ~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~--v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E 173 (458)
.+++|+.+.......-=..+-..+... .|. ++.... +..++++++.+|++|+++..... ....+.-.|+..|
T Consensus 3 ~g~l~Ig~~~~~~~~~l~~~l~~~~~~--~P~i~i~i~~~-~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~~~~~l~~~ 76 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPYLLPKLIVSLRRT--APKMPLMLEEN-YTHTLTESLKRGDVDAIIVAEPF---QEPGIVTEPLYDE 76 (219)
T ss_dssp CCCEEEEEETTTHHHHHHHHHHHHHHH--STTCCEEEEEE-CHHHHHHHHHHTSSSEEEEESSC---CCTTEEEEEEEEE
T ss_pred CCcEEEEEcchhhHHHHHHHHHHHHHH--CCCcEEEEEeC-CcHHHHHHHHcCCCCEEEEcCCC---CCCCeeEEEeeec
Confidence 356888777654332211111112211 243 444433 56789999999999999865421 1122223444333
Q ss_pred eecCCcceEEEEEEecCCC-----ccChhhhcCCceeeCCC
Q psy11925 174 KYGNEKDLLAVAVVNKNSK-----VKSLEELKGLKSCHTAY 209 (458)
Q Consensus 174 ~y~~~~~~~aVAVVkk~s~-----~~~l~dLkGkksChtg~ 209 (458)
.-+.|+.++.+ ..+++||.+.+......
T Consensus 77 --------~~~~v~~~~~pl~~~~~~~~~~L~~~~~i~~~~ 109 (219)
T 3jv9_A 77 --------PFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTE 109 (219)
T ss_dssp --------EEEEEEETTCGGGTSSSCCSSTTSSSCEEEECT
T ss_pred --------eEEEEEeCCCCcccCCCCCHHHhcCCcEEEecC
Confidence 34556666543 24788999888777543
No 92
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=59.29 E-value=8.1 Score=37.60 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=23.2
Q ss_pred CCeEEEecC---CHHHHHHHHHcCCccEEEeCCc
Q psy11925 126 PPFECNREK---SSKVCLKLIADGAADVITLDAT 156 (458)
Q Consensus 126 p~v~Cv~~~---s~~~Ci~~I~~g~AD~~~ld~~ 156 (458)
..|+-..+. +..+.+++++.|.+|++...++
T Consensus 36 i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~ 69 (312)
T 2xwv_A 36 IEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESA 69 (312)
T ss_dssp EEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGG
T ss_pred EEEEEecCCCCCCHHHHHHHHHCCCceEEEeCch
Confidence 345544442 4689999999999999988765
No 93
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=58.40 E-value=9 Score=37.15 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=52.4
Q ss_pred ecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceeeCCCCC
Q psy11925 132 REKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTAYMR 211 (458)
Q Consensus 132 ~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksChtg~~~ 211 (458)
...+.+...+++.+|+.|+..++...+.....++.+.|.++-.-. +.. ++|.||++ ++ +++| ||..-++-+.
T Consensus 43 ~~~~p~~L~~~l~~G~lDi~~vs~~~~~~~~~~~~~l~~~~i~a~-g~v-~s~~lv~~-~~---i~~L--k~Va~~~~s~ 114 (301)
T 2i6e_A 43 ITGVPTQMNAALLSGEVDIANVSAVEFIRHADTLAALPDFSVAVL-GPV-YSVNLFHT-CP---LPEL--RRVALTSQSA 114 (301)
T ss_dssp EECCHHHHHHHHHHSSCSEEEEEHHHHHHTTTTEEEEEEEEEEES-SCC-SSEEEEES-SC---GGGC--CEEEECTTCH
T ss_pred EECCHHHHHHHHHCCCCCEEEeCHHHHHhhhCcEEEecCeEEEee-CCc-ceEEEEeC-CC---HHHc--CEEEECCCCh
Confidence 456678999999999999998865433222223555565433211 111 77888876 43 5678 8998887543
Q ss_pred CCchHHHHHHHHHcCC
Q psy11925 212 TTGWVAPVYNLLEKGL 227 (458)
Q Consensus 212 taGw~~Pv~~L~~~~~ 227 (458)
| ...+--..|.+.|+
T Consensus 115 t-~~~Ll~~lL~~~Gl 129 (301)
T 2i6e_A 115 M-SVALLEVLLRQKGL 129 (301)
T ss_dssp H-HHHHHHHHHHHTTC
T ss_pred H-HHHHHHHHHHHCCC
Confidence 3 33332223445554
No 94
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=58.34 E-value=4.1 Score=38.73 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHcCCccEEE
Q psy11925 133 EKSSKVCLKLIADGAADVIT 152 (458)
Q Consensus 133 ~~s~~~Ci~~I~~g~AD~~~ 152 (458)
..+...++.++.+|++|++.
T Consensus 77 ~~~~~~~~~~l~~g~~D~~~ 96 (312)
T 1yae_A 77 NGQWNGMVRELIDHKADLAV 96 (312)
T ss_dssp TCCBCSHHHHHHTTSCSEEC
T ss_pred CCcchHHHHHHhCCCcCEEe
Confidence 35678899999999999986
No 95
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=58.19 E-value=5.7 Score=38.99 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=18.4
Q ss_pred CHHHHHHHHHcCCccEEEeCCc
Q psy11925 135 SSKVCLKLIADGAADVITLDAT 156 (458)
Q Consensus 135 s~~~Ci~~I~~g~AD~~~ld~~ 156 (458)
+..+.+++++.|.+|++...++
T Consensus 54 ~~~~~~~av~~G~id~~~~~~~ 75 (327)
T 2hpg_A 54 VEEDIIEQIRMGAPVGWNTDSA 75 (327)
T ss_dssp CCCCHHHHHHHTCSEEEEEEHH
T ss_pred CHHHHHHHHhCCCccEEEechH
Confidence 3578999999999999987653
No 96
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=57.98 E-value=43 Score=28.92 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=57.0
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKE 173 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E 173 (458)
..+++|+.+.......--..+-..+.. ..|.+.... ..+..+.++.+.+|++|+++.....- ...+.-.++..|
T Consensus 9 ~~g~l~Ig~~~~~~~~~l~~~l~~~~~--~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~~~~l~~~ 83 (232)
T 3ho7_A 9 LTGRLNIAVLPTIAPYLLPRVFPIWKK--ELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAE---TEGLEDDLLYYE 83 (232)
T ss_dssp -CEEEEEEECTTTHHHHHHHHHHHHHH--HSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCC---CTTEEEEEEEEE
T ss_pred cceeEEEEeccccchhhhHHHHHHHHH--HCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCC---CCCeEEEEeccc
Confidence 456799988876543322222222221 135544433 34578999999999999999765321 112222333322
Q ss_pred eecCCcceEEEEEEecCCC-----ccChhhhcCCceeeCC
Q psy11925 174 KYGNEKDLLAVAVVNKNSK-----VKSLEELKGLKSCHTA 208 (458)
Q Consensus 174 ~y~~~~~~~aVAVVkk~s~-----~~~l~dLkGkksChtg 208 (458)
.-+.|+.++.+ ..+++||++.+.....
T Consensus 84 --------~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~ 115 (232)
T 3ho7_A 84 --------EFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLD 115 (232)
T ss_dssp --------EEEEEECTTSGGGGSSSBCGGGCCGGGBCCCT
T ss_pred --------CEEEEEcCCCccccCCCcCHHHhcCCCEEEec
Confidence 44666676643 2468888877665543
No 97
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=57.81 E-value=8.4 Score=34.52 Aligned_cols=114 Identities=15% Similarity=0.199 Sum_probs=65.5
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcCCceee
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCH 206 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkGkksCh 206 (458)
+++-+. .+...+++++++|++|++...-. +...+.-.+. ..+-|.. ...+.|+++++ ++||+| +.+-
T Consensus 45 ~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~--~t~~r~~~~~--fs~p~~~---~~~~~~~~~~~----~~dL~g-~igv 111 (232)
T 3i6v_A 45 TCEWVK-NDWDSIIPNLVSGNYDTIIAGMS--ITDERDEVID--FTQNYIP---PTASSYVATSD----GADLSG-IVAA 111 (232)
T ss_dssp CEEEEE-CCGGGHHHHHHTTSCSEECSSCB--CCHHHHTTSE--EEEEEEC---CCEEEEEESST----TCCTTS-EEEE
T ss_pred ceEEEE-CCHHHHHHHHHCCCCCEEEeCCc--CCHHHHhhcC--ccccccc---CCeEEEEECCC----hHHhCC-CEEE
Confidence 455555 47899999999999999653211 1221211111 1111111 13456677765 889999 8765
Q ss_pred CCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCCCCCChh-hhhhcccCC
Q psy11925 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT-PLQCLKSGD 285 (458)
Q Consensus 207 tg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~~~CGy~-A~rCL~eg~ 285 (458)
. .|+... ..|.+.+. .+ ..+. +.. +++.|..|.
T Consensus 112 ~-----~g~~~~-~~l~~~~~----------~~-~~~~-----------------------------~~~~~~~~L~~Gr 145 (232)
T 3i6v_A 112 Q-----TATIQA-GYIAESGA----------TL-VEFA-----------------------------TPEETIAAVRNGE 145 (232)
T ss_dssp E-----TTSHHH-HHHHHSSS----------EE-EEES-----------------------------SHHHHHHHHHTTS
T ss_pred e-----cCchHH-HHHHhcCC----------eE-EEeC-----------------------------CHHHHHHHHHcCC
Confidence 2 344332 23333210 01 0111 245 999999999
Q ss_pred CcEEEEechhhhhh
Q psy11925 286 GDVAFIKQVKVNKA 299 (458)
Q Consensus 286 GDVAFvk~~tv~~~ 299 (458)
.|+++....++...
T Consensus 146 vDa~i~~~~~~~~~ 159 (232)
T 3i6v_A 146 ADAVFADRDYLVPI 159 (232)
T ss_dssp SSEEEEEHHHHHHH
T ss_pred cCEEEEChHHHHHH
Confidence 99999988777654
No 98
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=56.58 E-value=7.3 Score=37.08 Aligned_cols=94 Identities=18% Similarity=0.117 Sum_probs=66.2
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEE---eccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhc-C
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVL---GRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELK-G 201 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~---A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLk-G 201 (458)
-.++-+.-+++.+-.+++.+|+.|+-.+.-..+.. ..+.++|++|..-. .. . . ++. +..+++++||+ |
T Consensus 34 i~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~lv~v~~~~-~~-p--~--glY--S~k~ksl~dL~~G 105 (237)
T 3k2d_A 34 LDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLTIAGNTF-VY-P--I--AGY--SKQVKSVAALADG 105 (237)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHHHHHHHCCCEEEEEECC-CC-C--C--EEE--CSSCSCSTTCCTT
T ss_pred CEEEEEEeCChHhHHHHHHcCCCCeeccCCHHHHHHHHHHCCCCEEEEeeec-cc-c--e--EEe--cCCCCCHHHhcCC
Confidence 47888999999999999999999999886654432 23467888875322 11 1 2 222 35688999998 9
Q ss_pred CceeeCCCCCCCchHHHHHHHHHcCCCC
Q psy11925 202 LKSCHTAYMRTTGWVAPVYNLLEKGLIK 229 (458)
Q Consensus 202 kksChtg~~~taGw~~Pv~~L~~~~~i~ 229 (458)
++..-+.- ++..---+..|.+.|+|.
T Consensus 106 a~IaipnD--~tN~~RaL~lL~~aGLIk 131 (237)
T 3k2d_A 106 VRIAVPND--PTNLGRSLLLLEQQGLIK 131 (237)
T ss_dssp CEEEEECS--HHHHHHHHHHHHHTTSCE
T ss_pred CEEEecCC--ccHHHHHHHHHHHCCCEE
Confidence 99988654 334444456777889985
No 99
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=54.68 E-value=2.1 Score=42.52 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=19.7
Q ss_pred CHHHHHHHHHcCCccEEEeCCc
Q psy11925 135 SSKVCLKLIADGAADVITLDAT 156 (458)
Q Consensus 135 s~~~Ci~~I~~g~AD~~~ld~~ 156 (458)
+..+.+++++.|.+|++...++
T Consensus 79 ~~~~~~e~v~~G~id~~~~~~~ 100 (361)
T 2zzv_A 79 GTFDMFDAVKTGVLDGMNPFTL 100 (361)
T ss_dssp CGGGHHHHHHHTSSSEEECBGG
T ss_pred CHHHHHHHHHcCceeEEEeccc
Confidence 5789999999999999988765
No 100
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=50.33 E-value=11 Score=36.73 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=66.4
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEe---ccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhc-C
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVLG---RKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELK-G 201 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A---~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLk-G 201 (458)
-.|+-+.-+++..-.+++.+|+.|+-.+.-..++.. .+.++|++|..-. .. . .+ +. +..+++++||+ |
T Consensus 51 i~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~-~~-p--~g--lY--S~kiksl~dL~~G 122 (275)
T 3gxa_A 51 YTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVP-TA-P--LG--LY--PGKLKSLEEVKDG 122 (275)
T ss_dssp CEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECC-BC-C--CE--EE--ESSCCCGGGCCTT
T ss_pred CeEEEEEeCCcHhHHHHHHcCCCCeeecCCHHHHHHHHHHcCCCEEEEeecc-cc-c--eE--Ee--cCCCCCHHHcCCC
Confidence 468889999999999999999999999876655432 3467888875432 11 1 22 22 24588999998 9
Q ss_pred CceeeCCCCCCCchHHHHHHHHHcCCCC
Q psy11925 202 LKSCHTAYMRTTGWVAPVYNLLEKGLIK 229 (458)
Q Consensus 202 kksChtg~~~taGw~~Pv~~L~~~~~i~ 229 (458)
++..-|.- ++..---+..|.+.|+|.
T Consensus 123 a~IAIPnD--ptN~~RaL~lL~~aGLIk 148 (275)
T 3gxa_A 123 STVSAPND--PSNFARVLVMLDELGWIK 148 (275)
T ss_dssp CEEEEECS--HHHHHHHHHHHHHTTSSE
T ss_pred CEEEecCC--ccHHHHHHHHHHHCCCEE
Confidence 99998654 333444455677889985
No 101
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=49.52 E-value=7.3 Score=37.63 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=48.3
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEE---eCC-cceEEec-cCCCceEEEEEeecCCcceEEEEEEecCC---CccChhh
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVIT---LDA-TEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNS---KVKSLEE 198 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~---ld~-~~~y~A~-~~~~L~pil~E~y~~~~~~~aVAVVkk~s---~~~~l~d 198 (458)
.++-+. .+.....++|.+|++|+.. ++. ..+|... ...+++-+- ..+. +. .++++| ++.+ +++|++|
T Consensus 36 ~Ve~~~-~~~~~~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~~l~-~~~~-~~-~~~l~V-~~~~ae~~I~si~D 110 (298)
T 2rin_A 36 ETDVKV-LSVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVR-ENLA-GA-KYTLAT-NAKGAELGIKDFKD 110 (298)
T ss_dssp EEEEEC-CCHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEEEEE-EEEE-EE-EEEEEE-EHHHHHHTCCBGGG
T ss_pred ceEEEE-CCcHHHHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEEEec-cCCC-CC-eEEEEE-chhHHhcCCCCHHH
Confidence 355455 4678899999999999985 221 1233321 234454332 2211 11 167655 5555 7899999
Q ss_pred hc-------CCceeeCCCCCCCchHH
Q psy11925 199 LK-------GLKSCHTAYMRTTGWVA 217 (458)
Q Consensus 199 Lk-------GkksChtg~~~taGw~~ 217 (458)
|+ ||+ +++..||..
T Consensus 111 Lk~~~~~~~gk~-----~g~~~G~~~ 131 (298)
T 2rin_A 111 IAAHKDELDGKI-----YGIEPGNDG 131 (298)
T ss_dssp SGGGHHHHTSEE-----ECCSTTCHH
T ss_pred HHHHHHHcCCeE-----ECCCCChHH
Confidence 99 766 345667765
No 102
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=49.39 E-value=5.7 Score=37.49 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=40.3
Q ss_pred ecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEEEeecCCcceEEEEEEecCC-CccChhhhc------C
Q psy11925 132 REKSSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILKEKYGNEKDLLAVAVVNKNS-KVKSLEELK------G 201 (458)
Q Consensus 132 ~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~E~y~~~~~~~aVAVVkk~s-~~~~l~dLk------G 201 (458)
...+...++.++.+|++|++... -.+...|.-.+ .|++. ...+.++++++ .+.+++||+ |
T Consensus 101 ~~~~w~~~~~~l~~g~~D~~~~~--~~~t~eR~~~~~fs~P~~~--------~~~~i~~~~~~~~i~~~~dL~~~~~~~g 170 (294)
T 2rc8_A 101 KNGHWTGLVGDLLSGTANMAVTS--FSINTARSQVIDFTSPFFS--------TSLGILVRTRGTELSGIHDPKLHHPSQG 170 (294)
T ss_dssp ETTEECHHHHHHHHTSCSEECSS--CBCCHHHHTTSEECSCSEE--------EEEEEEEETTSCCCCSTTCHHHHSCCTT
T ss_pred CCCCHHHHHHHHHCCCcCEEEec--cccCHhHhceEEEccchHh--------cceEEEEECCCCCcCChhhhhhcCcccC
Confidence 34567899999999999998622 11122121111 12211 13456677765 688999999 9
Q ss_pred Cceee
Q psy11925 202 LKSCH 206 (458)
Q Consensus 202 kksCh 206 (458)
++.+-
T Consensus 171 ~~vg~ 175 (294)
T 2rc8_A 171 FRFGT 175 (294)
T ss_dssp CCEEC
T ss_pred eEEEE
Confidence 98875
No 103
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=47.82 E-value=1.1e+02 Score=26.66 Aligned_cols=101 Identities=10% Similarity=-0.011 Sum_probs=57.8
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCC--eEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPP--FECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILK 172 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~--v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~ 172 (458)
..+++|+.+.......--..+-..+... .|. ++... .+..+.++++.+|++|+++..... ....+..+|+..
T Consensus 17 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~--~P~i~l~~~~-~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~~~~~l~~ 90 (241)
T 3oxn_A 17 CDQTFTIATTDYAMQTILPFALPRIYQE--APNVSFNFLP-LQHDRLSDQLTYEGADLAICRPTG---PVEPLRSEILGR 90 (241)
T ss_dssp CCCEEEEEECSHHHHHTHHHHHHHHHHH--CTTCEEEEEE-CCGGGHHHHHHTSCCSEEEECCSS---CCTTEEEEEEEC
T ss_pred CCceEEEEechHHHHHHHHHHHHHHHHH--CCCCEEEEEE-CCcccHHHHHHcCCCCEEEecCCC---CCccceeEEeec
Confidence 3467999998765433322222222221 244 44433 456799999999999999874332 111122233321
Q ss_pred EeecCCcceEEEEEEecCCC----ccChhhhcCCceeeCCC
Q psy11925 173 EKYGNEKDLLAVAVVNKNSK----VKSLEELKGLKSCHTAY 209 (458)
Q Consensus 173 E~y~~~~~~~aVAVVkk~s~----~~~l~dLkGkksChtg~ 209 (458)
| ..++|+.++.+ ..+++||++-.......
T Consensus 91 ~--------~~~~v~~~~hpl~~~~i~~~dL~~~~~i~~~~ 123 (241)
T 3oxn_A 91 V--------GVLCLLSKQHPLANQEMSLDDYLSHPHAMIAI 123 (241)
T ss_dssp C--------CEEEEEETTSGGGGSCCCHHHHHTSEEEECSC
T ss_pred c--------cEEEEEeCCCCcccCCCCHHHHhcCCeEEEec
Confidence 1 44566676653 24788999888876443
No 104
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=45.58 E-value=8.9 Score=35.92 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEEEeecCCcceEEEEEEecCCCccChhhhcC
Q psy11925 133 EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKG 201 (458)
Q Consensus 133 ~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkG 201 (458)
..+..+++.++.+|++|++.-+- .+...+.-.+ .|++. ...+.+|++++.+.+++||+|
T Consensus 91 ~~~~~~~~~~l~~g~~D~~~~~~--~~t~~R~~~~~fs~p~~~--------~~~~~~~~~~~~~~~~~dl~~ 152 (284)
T 2a5s_A 91 NNVWNGMIGEVVYQRAVMAVGSL--TINEERSEVVDFSVPFVE--------TGISVMVSRGTQVTGLSDKKF 152 (284)
T ss_dssp TTEECHHHHHHHTTSCSEECSSC--BCCHHHHTTEEECCCCEE--------ECEEEEEETTCCCCSTTSHHH
T ss_pred CCCHHHHHHHHhcCCcCEEEEEE--EEeccccceEEeccCchh--------cCEEEEEECCccccccccccc
Confidence 45678999999999999986321 1122221111 12111 145677888888888888774
No 105
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=44.50 E-value=1.1e+02 Score=25.93 Aligned_cols=100 Identities=13% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCceEEEeCChhHHhHH-HHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEE
Q psy11925 96 IKPIRWCVSSPEGMSKC-LAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKE 173 (458)
Q Consensus 96 ~~~vrwCv~s~~E~~KC-~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E 173 (458)
.+++|+.+.......-- ..+.. +.. ..|.+.... ..+..+.++.+.+|++|+++..... ....+.-.++..+
T Consensus 7 ~g~l~Ig~~~~~~~~~l~~~l~~-f~~--~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~---~~~~~~~~~l~~~ 80 (222)
T 4ab5_A 7 AGELRIAVECHTCFDWLMPAMGE-FRP--MWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAE---KQNGISFQPLFAY 80 (222)
T ss_dssp TEEEEEECCCTTTHHHHHHHHHH-HHH--HSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCC---CCTTEEEEEEEEE
T ss_pred cceEEEEEehHHHHHHHHHHHHH-HHH--HCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCC---CcCCeEEEEeecC
Confidence 45689988764433222 22222 221 124443333 2345789999999999999875332 1111222333322
Q ss_pred eecCCcceEEEEEEecCCCc-----cChhhhcCCceeeCCC
Q psy11925 174 KYGNEKDLLAVAVVNKNSKV-----KSLEELKGLKSCHTAY 209 (458)
Q Consensus 174 ~y~~~~~~~aVAVVkk~s~~-----~~l~dLkGkksChtg~ 209 (458)
..++|+.++.+. .+++||++.+......
T Consensus 81 --------~~~~v~~~~~pl~~~~~i~~~dL~~~~~i~~~~ 113 (222)
T 4ab5_A 81 --------EMVGICAPDHPLAAKNVWTAEDFIGETLITYPV 113 (222)
T ss_dssp --------EEEEEECTTSGGGGCSEECGGGGSSSCEEECSS
T ss_pred --------cEEEEecCCChhhccCCcCHHHHcCCCEEecCC
Confidence 456667776532 4789999888776443
No 106
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=43.84 E-value=77 Score=29.63 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=60.7
Q ss_pred CCCceEEEeCChhHHhHH-HHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKC-LAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILK 172 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC-~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~ 172 (458)
..+++|+.+.......-- ..+.. +.. ..|.+.-.. ..+..+.++.+.+|++|+++...... ........|+..
T Consensus 91 ~~g~l~I~~~~~~~~~~l~~~l~~-f~~--~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~--~~~~l~~~~L~~ 165 (324)
T 1al3_A 91 DKGSLYVATTHTQARYALPGVIKG-FIE--RYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALH--LYDDLVMLPCYH 165 (324)
T ss_dssp CEEEEEEEECHHHHHHTSHHHHHH-HHH--HCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCC--TTSCEEEEEEEE
T ss_pred CCCeEEEEechhhhhhHHHHHHHH-HHH--HCCCCEEEEEECCHHHHHHHHHCCCceEEEEecCCC--CCCCeeEEEecC
Confidence 345799988764322111 11221 111 125544332 33578999999999999998653210 001112233332
Q ss_pred EeecCCcceEEEEEEecCCC-----ccChhhhcCCceeeCCCCCCCchHHHHHHHHHcC
Q psy11925 173 EKYGNEKDLLAVAVVNKNSK-----VKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKG 226 (458)
Q Consensus 173 E~y~~~~~~~aVAVVkk~s~-----~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~ 226 (458)
+ .-+.|+.++.+ ..+++||.+...-+...+.. .|..-...+...|
T Consensus 166 ~--------~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~-~~~~~~~~~~~~g 215 (324)
T 1al3_A 166 W--------NRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFT-GRSELDTAFNRAG 215 (324)
T ss_dssp E--------CEEEEECTTSTTTTTSCCCHHHHHTSEEEEECTTST-THHHHHHHHHHHT
T ss_pred C--------ceEEEEcCCCccccCCCCCHHHHhCCCeEEecCCCc-HHHHHHHHHHHcC
Confidence 2 23455666543 24789999888766544432 2333233344444
No 107
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=41.85 E-value=1.6e+02 Score=25.07 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=53.1
Q ss_pred CCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEec-CCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEe
Q psy11925 96 IKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNRE-KSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEK 174 (458)
Q Consensus 96 ~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~-~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~ 174 (458)
.+++|+.+.......-=..+-..+.. .-|.++-... .+..+.++++.+|++|+++..... ....+..+|+..|
T Consensus 4 ~g~lrIg~~~~~~~~~l~~~l~~f~~--~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~~- 77 (219)
T 1i6a_A 4 SGPLHIGLIPTVGPYLLPHIIPMLHQ--TFPKLEMYLHEAQTHQLLAQLDSGKLDAVILALVK---ESEAFIEVPLFDE- 77 (219)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHH--HCTTEEEEEEECCHHHHHHHHHHTSCSEEEEECCG---GGTTSEEEEEEEE-
T ss_pred ceEEEEEeccchhhhhhhHHHHHHHH--HCCCeEEEEEECChHHHHHHHHcCCeeEEEecCCC---CCCCcceeeeecc-
Confidence 34688887765432221111111111 1365554432 467899999999999999864321 1122333454433
Q ss_pred ecCCcceEEEEEEecCCCc-----cChhhhcCCceee
Q psy11925 175 YGNEKDLLAVAVVNKNSKV-----KSLEELKGLKSCH 206 (458)
Q Consensus 175 y~~~~~~~aVAVVkk~s~~-----~~l~dLkGkksCh 206 (458)
.-++|+.++.+. .+++||.+-..-.
T Consensus 78 -------~~~~v~~~~hpla~~~~i~~~dL~~~~~i~ 107 (219)
T 1i6a_A 78 -------PMLLAIYEDHPWANREAVPMADLAGEKLLM 107 (219)
T ss_dssp -------EEEEEEETTSGGGGCSCEEGGGGTTSEEEC
T ss_pred -------cEEEEEcCCCccccCCccCHHHhcCCcEEE
Confidence 345566666432 3577887765543
No 108
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=41.80 E-value=16 Score=34.84 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=65.3
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEE---eccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhc-C
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVL---GRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELK-G 201 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~---A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLk-G 201 (458)
-.++-+.-+++.+-.+++.+|+.|+-.+.-..+.. ..+.++|++|..-.. .-+++. +..+++++||+ |
T Consensus 35 i~veiv~F~Dy~~pN~AL~~G~IDaN~fQH~pyL~~~nk~~g~~lv~v~~~~~------~p~giY--S~k~ksl~dL~~G 106 (245)
T 3up9_A 35 IKLDIVEYTDYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGEGIHL------EPLGVF--SNKHKSLDELPDG 106 (245)
T ss_dssp EEEEEEECSSSHHHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEECCCCEE------CCCEEE--CSSCSCGGGCCTT
T ss_pred CeEEEEEecCcccHHHHHHcCCCceeccCCHHHHHHHHHHCCCCEEEEeeecc------cceEEE--eCCCCCHHHcCcC
Confidence 46899999999999999999999999886655443 234577877642111 111222 34588999999 9
Q ss_pred CceeeCCCCCCCchHHHHHHHHHcCCCC
Q psy11925 202 LKSCHTAYMRTTGWVAPVYNLLEKGLIK 229 (458)
Q Consensus 202 kksChtg~~~taGw~~Pv~~L~~~~~i~ 229 (458)
++..-|.-. +..---+..|.+.|+|.
T Consensus 107 a~IaIPnD~--tN~~RaL~lL~~aGLIk 132 (245)
T 3up9_A 107 GTIGIISDT--ANQSRALELLATQGLVS 132 (245)
T ss_dssp EEEEEECSH--HHHHHHHHHHHHTTSEE
T ss_pred CEEEEecCc--chHHHHHHHHHHCCCEE
Confidence 999886543 33344455677889985
No 109
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=41.01 E-value=26 Score=31.00 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcce
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEA 158 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~ 158 (458)
|.+.-+...+.+++++++.+|++|++..+...+
T Consensus 137 ~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~ 169 (242)
T 3del_B 137 SEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIA 169 (242)
T ss_dssp TTCCEEEESSHHHHHHHHHTTSSSEEEECHHHH
T ss_pred CCceEEEECCHHHHHHHHHcCCCCEEEecHHHH
Confidence 455666678999999999999999999886644
No 110
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=40.18 E-value=1.1e+02 Score=27.34 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=31.6
Q ss_pred CCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCC
Q psy11925 96 IKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDA 155 (458)
Q Consensus 96 ~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~ 155 (458)
.+++|+-+..... .-=..+...+...--...++... .+..+.++++.+|++|++....
T Consensus 27 ~g~l~Ig~~~~~~-~~l~~~l~~f~~~~P~i~v~i~~-~~~~~~~~~l~~g~~Di~i~~~ 84 (290)
T 1twy_A 27 ASEITISGSTSVA-RIMDVLAEKYNQQHPETYVAVQG-VGSTAGISLLKKGVADIAMTSR 84 (290)
T ss_dssp -CEEEEEECHHHH-HHHHHHHHHHHHHCTTCEEEEEE-SCHHHHHHHHHTTSCSEEEESS
T ss_pred CCCEEEecCcchH-HHHHHHHHHHHhhCCCceEEEEe-cCcHHHHHHHhcCCCcEEEecC
Confidence 4568887765432 11111111111111112344433 4678999999999999998653
No 111
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=38.03 E-value=14 Score=34.80 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCeEEEec----------------CCHHHHHHHHHcCCccEEEeCCcceEEeccCCCc---eEEEE
Q psy11925 112 CLAFKDAAFSRDIRPPFECNRE----------------KSSKVCLKLIADGAADVITLDATEAVLGRKNLNL---RPILK 172 (458)
Q Consensus 112 C~~l~~~~~~~~~~p~v~Cv~~----------------~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L---~pil~ 172 (458)
|-++..+ ....++-+++-+.. .+...++.++.+|++|++. ++-.+...|.-.+ .|++.
T Consensus 67 ~vDll~~-ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~--~~~~~t~~R~~~~~fs~Py~~ 143 (292)
T 1pb7_A 67 CIDLLIK-LARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIV--APLTINNERAQYIEFSKPFKY 143 (292)
T ss_dssp HHHHHHH-HHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEEC--SSCBCCHHHHTTEEECSCSEE
T ss_pred HHHHHHH-HHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEE--eeeEecHHHhcceEechhhHh
Q ss_pred EeecCCcceEEEEEEecCCCccChhhhc--CC
Q psy11925 173 EKYGNEKDLLAVAVVNKNSKVKSLEELK--GL 202 (458)
Q Consensus 173 E~y~~~~~~~aVAVVkk~s~~~~l~dLk--Gk 202 (458)
. ..+.++++++.+.+++||+ |+
T Consensus 144 ~--------~~~i~~~~~~~i~~~~dl~~~g~ 167 (292)
T 1pb7_A 144 Q--------GLTILVKKGTRITGINDPRLRNP 167 (292)
T ss_dssp E--------EEEEEEETTCCCCSTTCHHHHSC
T ss_pred c--------CeEEEEECCcCCCCCcCccccCc
No 112
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=37.50 E-value=64 Score=27.81 Aligned_cols=74 Identities=15% Similarity=-0.020 Sum_probs=43.2
Q ss_pred CeEEEecCCHHHHHHHHHcCC-ccEEEeCCcceE-EeccCCCc------eEEEEEeecCCcceEEEEEEecCCCc-cChh
Q psy11925 127 PFECNREKSSKVCLKLIADGA-ADVITLDATEAV-LGRKNLNL------RPILKEKYGNEKDLLAVAVVNKNSKV-KSLE 197 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~-AD~~~ld~~~~y-~A~~~~~L------~pil~E~y~~~~~~~aVAVVkk~s~~-~~l~ 197 (458)
.|+-.. .+..+.+++|.+|+ +|++........ .+.+ -++ .|+..+ ..|.|++++.+. .+|+
T Consensus 28 ~v~~~~-~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~vlv~~~~~~~~~~~~ 97 (231)
T 1atg_A 28 AVVISS-GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDN-QGFALPGSRFTYAIG--------KLVLWSAKPGLVDNQGK 97 (231)
T ss_dssp CEEEEE-ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHH-TTCBCTTCCEEEEEC--------CEEEEESSTTTSCTTSG
T ss_pred eEEEEE-CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHh-cCCCcCCceeEeeee--------eEEEEEcCCCCCCcchh
Confidence 455544 45688999999998 999887443211 1101 122 233211 446677777654 3699
Q ss_pred hhcCC---ceeeCCCC
Q psy11925 198 ELKGL---KSCHTAYM 210 (458)
Q Consensus 198 dLkGk---ksChtg~~ 210 (458)
||.+. +......+
T Consensus 98 dL~~~~~~~i~~~~~~ 113 (231)
T 1atg_A 98 VLAGNGWRHIAISNPQ 113 (231)
T ss_dssp GGGSSSCSCEEEECTT
T ss_pred hhccCCCCEEEecCCC
Confidence 99875 55554443
No 113
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=36.94 E-value=2.5e+02 Score=25.74 Aligned_cols=98 Identities=12% Similarity=0.010 Sum_probs=53.9
Q ss_pred ceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeec
Q psy11925 98 PIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYG 176 (458)
Q Consensus 98 ~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~ 176 (458)
++|+.+.......--..+-..+... -|.+.-.. ..+..+.++.+.+|++|+++..... ....+.-.|+..+
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~--~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~~~~L~~~--- 162 (312)
T 2h9b_A 91 TIRIGFVGSLLFGLLPRIIHLYRQA--HPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKI---SDPAIKHSLLRNE--- 162 (312)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHT--CTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCC---CCTTEEEEEEEEE---
T ss_pred eEEEEechhhhHhhHHHHHHHHHHH--CCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCC---CCCCceEEEeecc---
Confidence 7999887654322212221212221 25444332 3457899999999999999875432 1111222344332
Q ss_pred CCcceEEEEEEecCCC------c-cChhhhcCCceeeCC
Q psy11925 177 NEKDLLAVAVVNKNSK------V-KSLEELKGLKSCHTA 208 (458)
Q Consensus 177 ~~~~~~aVAVVkk~s~------~-~~l~dLkGkksChtg 208 (458)
..+.|+.++.+ . .+++||.+...-...
T Consensus 163 -----~~~~v~~~~hpla~~~~~~i~~~dL~~~~~i~~~ 196 (312)
T 2h9b_A 163 -----RLMVAVHASHPLNQMKDKGVHLNDLIDEKILLYP 196 (312)
T ss_dssp -----EEEEEEETTSGGGGGTTTCBCGGGSTTSEEEECC
T ss_pred -----eEEEEEcCCCccccccCCCCCHHHHcCCCEEEeC
Confidence 33455665532 1 478999988776643
No 114
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=36.08 E-value=18 Score=32.80 Aligned_cols=58 Identities=7% Similarity=-0.039 Sum_probs=36.8
Q ss_pred eEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcce
Q psy11925 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158 (458)
Q Consensus 99 vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~ 158 (458)
-|++++...... ..+.......|+.+...-+...+.+++++++.+|++|++..+...+
T Consensus 138 ~~v~v~~g~~~~--~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~ 195 (259)
T 4dz1_A 138 YSIGYPRGMAYS--DLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVY 195 (259)
T ss_dssp SCEEEETTSTHH--HHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHH
T ss_pred CEEEEeCCcHHH--HHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHH
Confidence 467776643222 2333322223333324556677899999999999999999886653
No 115
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=35.10 E-value=47 Score=29.05 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=52.2
Q ss_pred CCceEEEeCChhHHhHH-HHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEE
Q psy11925 96 IKPIRWCVSSPEGMSKC-LAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKE 173 (458)
Q Consensus 96 ~~~vrwCv~s~~E~~KC-~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E 173 (458)
.+++|+-+.......-= ..++. +.. .-|.++-.. ..+..+.++++.+|++|+++..... ........|+..|
T Consensus 7 ~g~l~Ig~~~~~~~~~lp~~l~~-f~~--~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~---~~~~l~~~~l~~~ 80 (218)
T 2y7p_A 7 TRTFNLAMTDIGEMYFMPPLMEA-LAQ--RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPE---LQTGFFQRRLFRH 80 (218)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHH-HHH--HCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCTT---CCTTEEEEEEEEE
T ss_pred ceEEEEEecHHHHHHHHHHHHHH-HHH--HCCCCEEEEEeCCcccHHHHHhCCCceEEEecCCC---CCcceeEEEeeec
Confidence 35688887654332211 12221 111 125544433 3456899999999999999864321 1112223444333
Q ss_pred eecCCcceEEEEEEecCCC----ccChhhhcCCcee
Q psy11925 174 KYGNEKDLLAVAVVNKNSK----VKSLEELKGLKSC 205 (458)
Q Consensus 174 ~y~~~~~~~aVAVVkk~s~----~~~l~dLkGkksC 205 (458)
.-|+|++++.+ ..+++||.+-..-
T Consensus 81 --------~~~~v~~~~hpla~~~i~l~dL~~~~~i 108 (218)
T 2y7p_A 81 --------RYVCMFRKDHPSAKSPMSLKQFTELEHV 108 (218)
T ss_dssp --------CEEEEEETTCSSCCSSCCHHHHHHSEEE
T ss_pred --------cEEEEEcCCCCCCCCCCCHHHHhhCCCE
Confidence 34566677654 2478888887743
No 116
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=34.26 E-value=30 Score=30.89 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=27.9
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceE
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAV 159 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y 159 (458)
+.+.-+...+..++++++.+|++|++..+...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~ 191 (268)
T 3qax_A 158 PGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGR 191 (268)
T ss_dssp TTCCEEEESCHHHHHHHHHTTSSSEEEECHHHHH
T ss_pred CCceEEecCCHHHHHHHHHcCCCCEEEecHHHHH
Confidence 4566667779999999999999999998866543
No 117
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=33.80 E-value=2.6e+02 Score=25.00 Aligned_cols=101 Identities=9% Similarity=0.020 Sum_probs=57.3
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKE 173 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E 173 (458)
..+++|+.+.......--..+-..+.. ..|.+.... ..+..+.++.+.+|++|+++..... ........|+..+
T Consensus 89 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~--~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~~ 163 (294)
T 1ixc_A 89 DVGELSVAYFGTPIYRSLPLLLRAFLT--STPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFP---RHPGIEIVNIAQE 163 (294)
T ss_dssp CCEEEEEEECSGGGGTHHHHHHHHHHH--HCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCC---CCTTEEEEEEEEE
T ss_pred CCceEEEEEccchhHHHHHHHHHHHHH--HCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCC---CCCCceEEEEeec
Confidence 456799988875432222222222221 125544432 3357889999999999999875432 1112222344332
Q ss_pred eecCCcceEEEEEEecCCC-----ccChhhhcCCceeeCC
Q psy11925 174 KYGNEKDLLAVAVVNKNSK-----VKSLEELKGLKSCHTA 208 (458)
Q Consensus 174 ~y~~~~~~~aVAVVkk~s~-----~~~l~dLkGkksChtg 208 (458)
.-+.|+.++.+ ..+++||.+-..-...
T Consensus 164 --------~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~ 195 (294)
T 1ixc_A 164 --------DLYLAVHRSQSGKFGKTCKLADLRAVELTLFP 195 (294)
T ss_dssp --------EEEEEEEGGGGGGTCSEECGGGGTTCEEEECC
T ss_pred --------cEEEEEeCCCccccCCccCHHHHcCCCEEeeC
Confidence 34556666542 2478999988877654
No 118
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=32.23 E-value=29 Score=30.99 Aligned_cols=52 Identities=12% Similarity=0.015 Sum_probs=37.1
Q ss_pred eEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcce
Q psy11925 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158 (458)
Q Consensus 99 vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~ 158 (458)
.|++++..... -..+... .+.+.-+...+.+++++++.+|++|++..+...+
T Consensus 131 ~~i~v~~g~~~--~~~l~~~------~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~ 182 (249)
T 4f3p_A 131 KVIAAKTGTAT--IDWIKAH------LKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNV 182 (249)
T ss_dssp SEEEEETTSHH--HHHHHHH------CCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred CEEEEeCCChH--HHHHHhc------CCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHH
Confidence 57888765432 2233332 2556777788999999999999999999876644
No 119
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=31.41 E-value=38 Score=32.28 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=66.3
Q ss_pred CCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEe---ccCCCceEEEEEeecCCcce-EEEEEEecCCCccChhhhc-
Q psy11925 126 PPFECNREKSSKVCLKLIADGAADVITLDATEAVLG---RKNLNLRPILKEKYGNEKDL-LAVAVVNKNSKVKSLEELK- 200 (458)
Q Consensus 126 p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A---~~~~~L~pil~E~y~~~~~~-~aVAVVkk~s~~~~l~dLk- 200 (458)
-.++-+.-+++..-.+++.+|+.|+-.+.-..+... .+.++|++|..-.. . ... | +..+++++||+
T Consensus 29 i~leiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~~-~-p~glY-------S~k~ksl~dl~~ 99 (245)
T 3ir1_A 29 YTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVPT-A-PLGLY-------PGKLKSLEEVKD 99 (245)
T ss_dssp CEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECCB-C-CCEEE-------ESSCCCGGGCCT
T ss_pred ceEEEEEeCCcHhHHHHHHCCCcCeeccCCHHHHHHHHHHcCCCEEEEeeecc-c-ceEEe-------cCCCCCHHHcCC
Confidence 468888999999999999999999998876655432 35678888754221 1 111 3 24578999998
Q ss_pred CCceeeCCCCCCCchHHHHHHHHHcCCCC
Q psy11925 201 GLKSCHTAYMRTTGWVAPVYNLLEKGLIK 229 (458)
Q Consensus 201 GkksChtg~~~taGw~~Pv~~L~~~~~i~ 229 (458)
|++..-|.- ++..---+..|.+.|+|.
T Consensus 100 Ga~IaIPnD--ptN~~RaL~lL~~aGLIk 126 (245)
T 3ir1_A 100 GSTVSAPND--PSNFARVLVMLDELGWIK 126 (245)
T ss_dssp TCEEEEECS--HHHHHHHHHHHHHTTSSE
T ss_pred CCEEEecCC--ccHHHHHHHHHHHCCCEE
Confidence 999988654 334444455677889985
No 120
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=31.23 E-value=16 Score=35.45 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHcCCccEEE---eCC-cceEEec-cCCCceEEEEEeecCCcce-EEEEEEecCC----CccChhhhcC
Q psy11925 134 KSSKVCLKLIADGAADVIT---LDA-TEAVLGR-KNLNLRPILKEKYGNEKDL-LAVAVVNKNS----KVKSLEELKG 201 (458)
Q Consensus 134 ~s~~~Ci~~I~~g~AD~~~---ld~-~~~y~A~-~~~~L~pil~E~y~~~~~~-~aVAVVkk~s----~~~~l~dLkG 201 (458)
.+...++++|.+|++|+.. ++. ..+|... ...+|+-+ ...+ ... ++++| ++.+ +++|++||+|
T Consensus 44 ~~~~~~~~Al~~G~iDi~~e~w~~~~~~~~~~~~~~~~l~~l-~~~~---~~~~~~l~V-~~~~a~~~~i~si~DL~~ 116 (309)
T 1r9l_A 44 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYRE-GVFV---NGAAQGYLI-DKKTADQYKITNIAQLKD 116 (309)
T ss_dssp CCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEEC-SCSE---EEEEEEEEE-EHHHHHHHTCCBGGGGGS
T ss_pred CchHHHHHHHhcCCceEEeccccCccHHHHHHhhcCCcEEEe-cccC---CCceEEEEE-chhhhhhcCCCCHHHHcC
Confidence 4789999999999999985 332 3444331 22333322 1110 112 77666 5543 7899999995
No 121
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=30.81 E-value=1.1e+02 Score=25.78 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=42.1
Q ss_pred CCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCCcceEEEEEEecCCC------ccChhh
Q psy11925 126 PPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSK------VKSLEE 198 (458)
Q Consensus 126 p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~------~~~l~d 198 (458)
|.++-.. ..+..+.++.+.+|++|+++..... ....+..+++..| ..++|+.++.+ ..+++|
T Consensus 32 P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~~--------~~~~v~~~~hpl~~~~~~~~~~~ 100 (209)
T 2ql3_A 32 PRASVEFREDTQNRLRTQLEGGELDVAIVYDLD---LSPEWQTVPLMTR--------EPMVVLGAEHPLAGVDGPVRLAD 100 (209)
T ss_dssp TTEEEEEEECCHHHHHHHHHTTSCSEEEEESSS---CCTTEEEEEEEEE--------CCEEEEETTCGGGGCCSCBCGGG
T ss_pred CCceEEEEECcHHHHHHHHHcCCccEEEEecCC---CCCCceEEEeecC--------ceEEEEeCCCccccCCCCcCHHH
Confidence 5544432 3467889999999999999864321 1111222344333 23455555532 347899
Q ss_pred hcCCceeeCC
Q psy11925 199 LKGLKSCHTA 208 (458)
Q Consensus 199 LkGkksChtg 208 (458)
|++...-...
T Consensus 101 l~~~~~i~~~ 110 (209)
T 2ql3_A 101 LAEHPMVLLD 110 (209)
T ss_dssp GTTSCEEEEC
T ss_pred HhCCCEEeeC
Confidence 9988766543
No 122
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=28.27 E-value=2e+02 Score=25.93 Aligned_cols=118 Identities=13% Similarity=-0.025 Sum_probs=63.1
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKE 173 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E 173 (458)
..+++|+.+.......--..+-..+.. ..|.+.... ..+..+.++.+.+|++|+++..+... ..+ +..+
T Consensus 93 ~~g~l~i~~~~~~~~~~l~~~l~~f~~--~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~-----~~~---l~~~ 162 (306)
T 3fzv_A 93 IAGQIDIGCFETVAPLYLPGLIAGFRQ--AYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDL-----DST---IETE 162 (306)
T ss_dssp CCEEEEEEEEGGGHHHHHHHHHHHHHH--HCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSC-----CTT---EEEE
T ss_pred CCceEEEEechhhhHHHHHHHHHHHHH--HCCCeEEEEEeCCHHHHHHHHHCCCccEEEEecccc-----ccc---ccee
Confidence 456799988776544332222222222 135544433 34678899999999999998654321 112 2222
Q ss_pred eecCCcceEEEEEEecCCCc-----cChhhhcCCceeeCCCCCCCchHHHHHHHHHcC
Q psy11925 174 KYGNEKDLLAVAVVNKNSKV-----KSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKG 226 (458)
Q Consensus 174 ~y~~~~~~~aVAVVkk~s~~-----~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~ 226 (458)
.....+ ..++|+.++.+. .+++||.+-..-....+. ++..-...+.+.|
T Consensus 163 ~l~~~~--~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~--~~~~~~~~~~~~g 216 (306)
T 3fzv_A 163 PLMPPQ--RPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQP--SRTYFVSLFEELG 216 (306)
T ss_dssp ESSCCB--CCEEEEETTCTTTTSSEECHHHHTTSCEEEECCTT--HHHHHHHHHHHTT
T ss_pred eeeecc--ccEEEecCCCcccCCCCCCHHHHcCCCEEEecCCc--chHHHHHHHHHcC
Confidence 221011 234555665432 478999998877754432 2333333444444
No 123
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=28.04 E-value=2.9e+02 Score=23.69 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=56.0
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKE 173 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E 173 (458)
..+++|+.+.......-=..+-..+.. .-|.++-.. ..+..+.++++.+|++|+++...... ....+...|+..|
T Consensus 12 ~~g~lrIg~~~~~~~~~l~~~l~~f~~--~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~--~~~~l~~~~l~~~ 87 (228)
T 2fyi_A 12 TSGVLTIATTHTQARYSLPEVIKAFRE--LFPEVRLELIQGTPQEIATLLQNGEADIGIASERLS--NDPQLVAFPWFRW 87 (228)
T ss_dssp CCEEEEEEECHHHHHHTHHHHHHHHHH--HCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSST--TCTTEEEEEEEEE
T ss_pred CcceEEEeeccchHHHHHHHHHHHHHH--HCCCcEEEEEeCCHHHHHHHHHcCCccEEEEecccC--CCCCceEEEeeec
Confidence 456799988764432222222111211 135555433 34578999999999999998652110 0011222344332
Q ss_pred eecCCcceEEEEEEecCCC-----ccChhhhcCCceeeCCC
Q psy11925 174 KYGNEKDLLAVAVVNKNSK-----VKSLEELKGLKSCHTAY 209 (458)
Q Consensus 174 ~y~~~~~~~aVAVVkk~s~-----~~~l~dLkGkksChtg~ 209 (458)
.-+.|+.++.+ ..+++||.+-..-....
T Consensus 88 --------~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~~~ 120 (228)
T 2fyi_A 88 --------HHSLLVPHDHPLTQISPLTLESIAKWPLITYRQ 120 (228)
T ss_dssp --------CEEEEEETTCGGGTSSSCCHHHHTTSCEEEECT
T ss_pred --------ceEEEecCCCCccccCccCHHHHcCCCeEEecC
Confidence 23556666543 24689999887765443
No 124
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=27.59 E-value=1e+02 Score=28.67 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=48.1
Q ss_pred CeEEEecCCHHHHHHHHHcCCccEEE---eCC--cceEEeccCCCceEEEEEeecCCcceEEEEEEecCCCccChhhhcC
Q psy11925 127 PFECNREKSSKVCLKLIADGAADVIT---LDA--TEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKG 201 (458)
Q Consensus 127 ~v~Cv~~~s~~~Ci~~I~~g~AD~~~---ld~--~~~y~A~~~~~L~pil~E~y~~~~~~~aVAVVkk~s~~~~l~dLkG 201 (458)
+++-+.. +..-+.++|.+|++|+.. ++. ..+|...+ .+++- +...+. +. .|+++| ++..+++|++||+.
T Consensus 31 ~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~-~~l~~-l~~~~~-~~-~~~l~V-p~~~~i~si~DL~~ 104 (256)
T 3l6g_A 31 DVKTTAL-DNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYG-KSVDL-LGPNLK-GA-KVGFVV-PSYMNVNSIEDLTN 104 (256)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHG-GGEEE-EEEEEE-EE-EEEEEE-ETTSCCCBGGGCSS
T ss_pred ceEEEEC-ChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhC-CceEE-ccccCC-Cc-eEEEEE-CCccCCCCHHHHHH
Confidence 4555554 678899999999999964 332 23332211 23332 222221 11 177777 55568999999972
Q ss_pred CceeeCCCCCCCchHH
Q psy11925 202 LKSCHTAYMRTTGWVA 217 (458)
Q Consensus 202 kksChtg~~~taGw~~ 217 (458)
+ .=.-=+++..||..
T Consensus 105 ~-~~g~~~g~~~G~~~ 119 (256)
T 3l6g_A 105 Q-ANKTITGIEPGAGV 119 (256)
T ss_dssp G-GGGEEECCCTTCHH
T ss_pred h-cCCeEEecCCCchh
Confidence 1 11112466788864
No 125
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=26.31 E-value=2.6e+02 Score=25.35 Aligned_cols=102 Identities=9% Similarity=0.077 Sum_probs=54.5
Q ss_pred CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEe-cCCHHHHHHHHHcCCccEEEeC---CcceEEeccCCCceEE
Q psy11925 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNR-EKSSKVCLKLIADGAADVITLD---ATEAVLGRKNLNLRPI 170 (458)
Q Consensus 95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~-~~s~~~Ci~~I~~g~AD~~~ld---~~~~y~A~~~~~L~pi 170 (458)
..+++|+.+.......-=..+-..+.. ..|.+.-.. ..+..+.++.+.+|++|+++.. ... ....+...|+
T Consensus 99 ~~~~l~Ig~~~~~~~~~l~~~l~~f~~--~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~---~~~~l~~~~l 173 (310)
T 2esn_A 99 SQRTFVFAATDYTAFALLPPLMNRLQH--SAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHER---LPEGIQAHDW 173 (310)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHH--HSTTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCC---CCTTEEEEEE
T ss_pred cCceEEEEeChHHHHHHHHHHHHHHHH--HCCCeEEEEEeCCcccHHHHHHcCCCCEEEecCccccc---CCcCcceeee
Confidence 346799988754322211111111111 125444333 2345678999999999999875 322 1112222344
Q ss_pred EEEeecCCcceEEEEEEecCCC----ccChhhhcCCceeeCCC
Q psy11925 171 LKEKYGNEKDLLAVAVVNKNSK----VKSLEELKGLKSCHTAY 209 (458)
Q Consensus 171 l~E~y~~~~~~~aVAVVkk~s~----~~~l~dLkGkksChtg~ 209 (458)
..| .-+.|+.++.+ ..+++||.+-..-....
T Consensus 174 ~~~--------~~~~v~~~~~pl~~~~i~~~dL~~~~~i~~~~ 208 (310)
T 2esn_A 174 FAD--------RYVVVARRDHPRLAGAPTLEGYLAERHAVVTP 208 (310)
T ss_dssp EEE--------CEEEEEESSCTTCSSSCCHHHHHTSEEEEECT
T ss_pred ecc--------ceEEEEeCCCCCcCCCCCHHHHhcCCcEEEeC
Confidence 332 33555666543 24789999887665443
No 126
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=24.70 E-value=49 Score=29.60 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=35.6
Q ss_pred eEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCc
Q psy11925 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156 (458)
Q Consensus 99 vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~ 156 (458)
.|++++...-... .+... .|...-+...+..++++++.+|++|++..|..
T Consensus 124 ~~i~v~~g~~~~~--~l~~~------~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~ 173 (243)
T 4h5g_A 124 ANIAAQKGTVPES--MVKEQ------LPKAQLTSLTNMGEAVNELQAGKIDAVHMDEP 173 (243)
T ss_dssp SEEEEETTSHHHH--HHHHH------CTTSEEEEESCHHHHHHHHHHTSCSEEEEEHH
T ss_pred CEEEecCCcHHHH--HHHHh------cccceeEEeCCHHHHHHHHHcCCccEEEecHH
Confidence 5788877543322 22221 25566778889999999999999999998754
No 127
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=23.89 E-value=51 Score=29.94 Aligned_cols=52 Identities=10% Similarity=0.124 Sum_probs=37.2
Q ss_pred ceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcc
Q psy11925 98 PIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATE 157 (458)
Q Consensus 98 ~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~ 157 (458)
..|++++...-.. ..+... .|.+.-+...+.+++++++.+|++|+++.+...
T Consensus 139 g~~i~v~~g~~~~--~~l~~~------~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~ 190 (267)
T 3mpk_A 139 GRTVALVRNSAAI--PLLQRR------YPQAKVVTADNPSEAMLMVANGQADAVVQTQIS 190 (267)
T ss_dssp TCEEEEETTCTHH--HHHHHH------CTTSEEEEESSHHHHHHHHHHTSCSEEEEEHHH
T ss_pred CCEEEEeCCchhH--HHHHHh------CCCcEEEEeCCHHHHHHHHHcCCCCEEEecHHH
Confidence 3688888754322 223321 256777788899999999999999999988544
No 128
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=23.63 E-value=60 Score=28.03 Aligned_cols=52 Identities=6% Similarity=-0.054 Sum_probs=36.1
Q ss_pred eEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcce
Q psy11925 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158 (458)
Q Consensus 99 vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~ 158 (458)
.|++++...-.. ..+... .|.+.-+...+..++++++.+|++|++..+...+
T Consensus 113 ~~v~~~~g~~~~--~~l~~~------~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~ 164 (229)
T 2y7i_A 113 KKVGLENGTTHQ--RYLQDK------QQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAI 164 (229)
T ss_dssp CEEEEETTSHHH--HHHHHH------CTTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred CEEEEecCCcHH--HHHHHh------CCCCeEEecCCHHHHHHHHHcCCcCEEEechHHH
Confidence 577877654331 233321 2456667788999999999999999999876543
No 129
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=23.33 E-value=3.5e+02 Score=23.10 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=52.5
Q ss_pred CCceEEEeCChhHHhH-HHHHHHHHhcCCCCCC--eEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEE
Q psy11925 96 IKPIRWCVSSPEGMSK-CLAFKDAAFSRDIRPP--FECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILK 172 (458)
Q Consensus 96 ~~~vrwCv~s~~E~~K-C~~l~~~~~~~~~~p~--v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~ 172 (458)
.+++|+.++......- -..+.. +... .|. ++... .+..+.++.+.+|++|+++..... ....+...|+..
T Consensus 29 ~g~l~Ig~~~~~~~~~l~~~l~~-f~~~--~P~v~l~~~~-~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~ 101 (238)
T 2hxr_A 29 RGSLRIAVTPTFTSYFIGPLMAD-FYAR--YPSITLQLQE-MSQEKIEDMLCRDELDVGIAFAPV---HSPELEAIPLLT 101 (238)
T ss_dssp --CEEEEECHHHHTTTHHHHHHH-HHHH--CTTSCEEEEE-CCHHHHHHHHHTTSCSEEEEESSC---CCTTEEEEEEEE
T ss_pred CCeEEEeechhhHHHHHHHHHHH-HHHh--CCCcEEEEEE-CCHHHHHHHHHcCCCcEEEEcCCC---Ccccceeeeecc
Confidence 4568888765432111 112222 1111 243 44443 457889999999999999864321 111222234433
Q ss_pred EeecCCcceEEEEEEecCCC-----ccChhhhcCCceeeCCC
Q psy11925 173 EKYGNEKDLLAVAVVNKNSK-----VKSLEELKGLKSCHTAY 209 (458)
Q Consensus 173 E~y~~~~~~~aVAVVkk~s~-----~~~l~dLkGkksChtg~ 209 (458)
| .-+.|+.++.+ ..+++||.+-..-....
T Consensus 102 ~--------~~~~v~~~~hpl~~~~~i~~~dl~~~~~i~~~~ 135 (238)
T 2hxr_A 102 E--------SLALVVAQHHPLAVHEQVALSRLHDEKLVLLSA 135 (238)
T ss_dssp E--------EEEEEEETTSGGGGCSEECGGGGGGCEEEEECT
T ss_pred C--------cEEEEEcCCCcccccCCCCHHHHhcCCeEEecC
Confidence 2 34556666653 24789999887765433
No 130
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=22.18 E-value=62 Score=28.57 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=36.9
Q ss_pred ceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcc
Q psy11925 98 PIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATE 157 (458)
Q Consensus 98 ~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~ 157 (458)
..|++++...-.. ..+... .|.+.-+...+..++++++.+|++|++..+...
T Consensus 115 g~~i~v~~g~~~~--~~l~~~------~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~ 166 (245)
T 3k4u_A 115 ELTLVTKFGVSAE--YAAKRL------FKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPF 166 (245)
T ss_dssp SCEEEEETTSHHH--HHHHHH------CSSSEEEEESSHHHHHHHHHSSSSEEEEEEHHH
T ss_pred CcEEEEeCCcHHH--HHHHhh------CCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHH
Confidence 5788888754322 122221 245677788899999999999999999988543
No 131
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=21.49 E-value=68 Score=28.11 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=36.3
Q ss_pred eEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcce
Q psy11925 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158 (458)
Q Consensus 99 vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~ 158 (458)
.|++++...-. -..+... .+.+.-+...+.+++++++.+|++|++..+...+
T Consensus 111 ~~i~~~~g~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~ 162 (237)
T 3kzg_A 111 KKIGVRKGTPY--ARQVLSE------NRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAA 162 (237)
T ss_dssp CEEEEETTSTH--HHHHHHT------CSSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred CEEEEecCCHH--HHHHHHh------CCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHH
Confidence 57888765321 1223221 2446777888999999999999999999876544
No 132
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=21.47 E-value=56 Score=28.59 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=37.5
Q ss_pred ceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcce
Q psy11925 98 PIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158 (458)
Q Consensus 98 ~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~ 158 (458)
..|++++...-... .+... .|.+.-+...+..++++++.+|++|++..+...+
T Consensus 125 g~~v~~~~g~~~~~--~l~~~------~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~ 177 (239)
T 3kbr_A 125 GVTAIVNPGGTNEK--FARAN------LKKARILVHPDNVTIFQQIVDGKADLMMTDAIEA 177 (239)
T ss_dssp TCEEEECTTSHHHH--HHHHH------CSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHH
T ss_pred CcEEEEcCCCcHHH--HHHHh------CCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHH
Confidence 57889887543321 22221 2456667778999999999999999999876644
No 133
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=20.45 E-value=56 Score=21.69 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=19.1
Q ss_pred CCCCCCeEEEecCCHHHHHHHHHcCC
Q psy11925 122 RDIRPPFECNREKSSKVCLKLIADGA 147 (458)
Q Consensus 122 ~~~~p~v~Cv~~~s~~~Ci~~I~~g~ 147 (458)
+.++|++-|+.. -+++-|+.|+.|.
T Consensus 4 rqlgpp~~c~p~-preql~esir~g~ 28 (38)
T 3mn5_S 4 RQLGPPRMCEPS-PREQLMESIRKGK 28 (38)
T ss_pred cccCCcccccCC-cHHHHHHHHHccc
Confidence 567788888765 4788888888875
Done!