RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11925
(458 letters)
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A
{Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A
1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C*
1z6v_A 1z6w_A
Length = 334
Score = 204 bits (519), Expect = 4e-62
Identities = 106/340 (31%), Positives = 146/340 (42%), Gaps = 41/340 (12%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
+ ++WC S +KC ++ R PP C + S C++ IA+ AD +TLD
Sbjct: 3 RRRSVQWCAVSQPEATKCFQWQRN-MRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLD 61
Query: 155 ATEAVL-GRKNLNLRPILKEKYGNEKDLL----AVAVVNKNSKVKSLEELKGLKSCHTAY 209
G LRP+ E YG E+ AVAVV K L EL+GLKSCHT
Sbjct: 62 GGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSF-QLNELQGLKSCHTGL 120
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKD-----APASLE 264
RT GW P+ L P VA FF SCVPG D+ + + E
Sbjct: 121 RRTAGWNVPIGTLRPFLDWTGPPEPIEAAVARFF-SASCVPGADKGQFPNLCRLCAGTGE 179
Query: 265 KICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C +++ Y +CL+ G GDVAFI + V + + + + +
Sbjct: 180 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIGESTVFEDLSDEAERDEY----------- 228
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E LC R PV K DC+L VP H VV N + D I + + A
Sbjct: 229 ----------ELLCPDNTRKPVDKFKDCHLARVPSHAVVA--RSVNGKEDAIWNLLRQAQ 276
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+ F K K F+LFGS G+ D+LF + A G +P +
Sbjct: 277 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRID 316
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo
sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A
2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A
1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A
...
Length = 327
Score = 199 bits (506), Expect = 2e-60
Identities = 105/337 (31%), Positives = 147/337 (43%), Gaps = 40/337 (11%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDA--AFSRDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D + P C ++ S C++ IA AD +T
Sbjct: 2 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 61
Query: 153 LDATEAVL-GRKNLNLRPILKEKYGNEKD----LLAVAVVNKNSKVKSLEELKGLKSCHT 207
LDA NL+P++ E YG+++D AVAVV K+S + +L+G KSCHT
Sbjct: 62 LDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGF-QMNQLRGKKSCHT 120
Query: 208 AYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKIC 267
R+ GW P+ L P K VA FF GSC P D + L C
Sbjct: 121 GLGRSAGWNIPIGLLYCDLPE--PRKPLEKAVANFF-SGSCAPCADGTDFPQLCQLCPGC 177
Query: 268 PKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVS 323
+T Y +CLK G GDVAF+K + + + +
Sbjct: 178 GCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQY-------------- 223
Query: 324 KAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLF 383
E LC R PV + DC+L VP H VV + + D I + A + F
Sbjct: 224 -------ELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGG--KEDLIWELLNQAQEHF 274
Query: 384 SK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
K K + F+LF S GK D+LF + A G +P +
Sbjct: 275 GKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVPPRMD 310
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin,
conformational change; 2.00A {Homo sapiens} SCOP:
c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A
1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A
1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A
1i6q_A 1jw1_A ...
Length = 691
Score = 206 bits (524), Expect = 1e-59
Identities = 99/453 (21%), Positives = 149/453 (32%), Gaps = 64/453 (14%)
Query: 1 MKLLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGES-----SGNDWL 55
K + C A P VA LR + K
Sbjct: 236 RKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQ 295
Query: 56 INVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPI------KPIRWCVSSPEGM 109
++L DS + YL + + + WC + +
Sbjct: 296 KDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAARRARVVWCAVGEQEL 355
Query: 110 SKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRP 169
KC + S C+ +++ C+ L+ G AD ++LD K L P
Sbjct: 356 RKCNQW-----SGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKC-GLVP 409
Query: 170 ILKEKYGNEKDL--------------LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGW 215
+L E Y +++ LAVAVV ++ + +KG KSCHTA RT GW
Sbjct: 410 VLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGW 469
Query: 216 VAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASL-----EKICPKA 270
P+ L + SC + + + SC PG D + E C
Sbjct: 470 NIPMGLLFNQT----GSCKFDE-----YFSQSCAPGSDPRSNLCALCIGDEQGENKCVPN 520
Query: 271 TRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAG 326
+ Y +CL GDVAF+K V V + A
Sbjct: 521 SNERYYGYTGAFRCLAENAGDVAFVKDVTVL-------------QNTDGNNNEAWAKDLK 567
Query: 327 DYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKK 386
+ LC G R PV++A C+L + P H VV+ K + H S
Sbjct: 568 LADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDC 627
Query: 387 PEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
P+ F LF S ++LF + + L + T
Sbjct: 628 PDKFCLFQS--ETKNLLFNDNTECLARLHGKTT 658
Score = 183 bits (464), Expect = 3e-51
Identities = 103/341 (30%), Positives = 145/341 (42%), Gaps = 47/341 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
+ ++WC S +KC ++ + PP C + S C++ IA+ AD +TLD
Sbjct: 4 RSVQWCAVSQPEATKCFQWQRN-MRKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGG 62
Query: 157 EA-VLGRKNLNLRPILKEKYGNEKDLL----AVAVVNKNSKVKSLEELKGLKSCHTAYMR 211
G LRP+ E YG E+ AVAVV K + L EL+GLKSCHT R
Sbjct: 63 FIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQ-LNELQGLKSCHTGLRR 121
Query: 212 TTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKAT 271
T GW P+ L P VA FF SCVPG D+ + +L ++C
Sbjct: 122 TAGWNVPIGTLRPFLNWTGPPEPIEAAVARFF-SASCVPGADKGQFP---NLCRLCAGTG 177
Query: 272 RVTYTP------------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
+CL+ G GDVAFI++ V + + + + +
Sbjct: 178 ENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDEY---------- 227
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
E LC R PV K DC+L VP H VV + D I + + A
Sbjct: 228 -----------ELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKE--DAIWNLLRQA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+ F K K F+LFGS G+ D+LF + A G +P +
Sbjct: 275 QEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRID 315
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus}
SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A
1gvc_A*
Length = 332
Score = 195 bits (496), Expect = 9e-59
Identities = 99/343 (28%), Positives = 143/343 (41%), Gaps = 48/343 (13%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
P IRWC S KC +D ++ R C ++ + C+K IA+ AD ITLD
Sbjct: 3 PKSVIRWCTISSPEEKKCNNLRDL--TQQERISLTCVQKATYLDCIKAIANNEADAITLD 60
Query: 155 ATEAVL-GRKNLNLRPILKEKYGNEKDL----LAVAVVNKNSKVKSLEELKGLKSCHTAY 209
+ G L+PI E Y + + AVAVV K ++ + +L+G SCHT
Sbjct: 61 GGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFT-VNDLQGKTSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPY---YKGVAEFFTGGSCVPGIDEEEK---DAPASL 263
R+ GW P+ LL +G I+ + + VA+FF SCVPG E+K
Sbjct: 120 GRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFF-SASCVPGATIEQKLCRQCKGDP 178
Query: 264 EKICPKATRVT-YT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
+ C + + Y+ CLK G GDVAF+K VN+ +
Sbjct: 179 KTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPD------------------- 219
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ +Y E LC G R PV CN V H VV + +++ I + A
Sbjct: 220 --QKDEY--ELLCLDGSRQPVDNYKTCNWARVAAHAVVAR---DDNKVEDIWSFLSKAQS 272
Query: 382 LFSK-KPEIFKLFGSFMGKP----DVLFLNPATGVEVLPDQAT 419
F F LFG K D+LF + A ++ +P
Sbjct: 273 DFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPSLMD 315
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate
structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP:
c.94.1.2 c.94.1.2 PDB: 1lfc_A
Length = 689
Score = 198 bits (504), Expect = 8e-57
Identities = 100/443 (22%), Positives = 151/443 (34%), Gaps = 62/443 (13%)
Query: 9 PCTWAARPWPGFVAN-------DRIEVNTQDLTQLRNYISQLNKLGESSGN----DWLIN 57
C A P VA ++ ++ + S+ +L S + +
Sbjct: 244 ECHLAQVPSHAVVARSVDGKEDLIWKLLSKAQEKFGKNKSRSFQLFGSPPGQRDLLFKDS 303
Query: 58 VLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKD 117
LG + VD+ L N + V + WC PE KC +
Sbjct: 304 ALGFLRIPSKVDSALYLGSRYLTTLKNLRETAEEVKARYTRVVWCAVGPEEQKKCQQW-- 361
Query: 118 AAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGN 177
S+ C ++ C+ L+ G AD + LD K L P+L E +
Sbjct: 362 ---SQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKC-GLVPVLAENRKS 417
Query: 178 EKDL------------LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEK 225
K LAVAVV K ++ + LK KSCHTA RT GW P+ ++
Sbjct: 418 SKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIV-- 475
Query: 226 GLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEK-----DAPASLEKICPKATRVTYT---- 276
+ EFF SC PG D + + C ++ Y
Sbjct: 476 ------NQTGSCAFDEFF-SQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTG 528
Query: 277 PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSK 336
+CL GDVAF+K V E + + LC
Sbjct: 529 AFRCLAEDVGDVAFVKNDTV-------------WENTNGESTADWAKNLNREDFRLLCLD 575
Query: 337 GGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSF 396
G R PV++A C+L V P H VV+ + ++ + H P+ F LF S
Sbjct: 576 GTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVKQVLLHQQALFGKNGKNCPDKFCLFKS- 634
Query: 397 MGKPDVLFLNPATGVEVLPDQAT 419
++LF + + L + T
Sbjct: 635 -ETKNLLFNDNTECLAKLGGRPT 656
Score = 189 bits (479), Expect = 3e-53
Identities = 106/358 (29%), Positives = 152/358 (42%), Gaps = 50/358 (13%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
P K +RWC S KC ++ + P C R + C++ IA+ AD +TLD
Sbjct: 2 PRKNVRWCTISQPEWFKCRRWQWR-MKKLGAPSITCVRRAFALECIRAIAEKKADAVTLD 60
Query: 155 ATEAVL-GRKNLNLRPILKEKYGNEKD----LLAVAVVNKNSKVKSLEELKGLKSCHTAY 209
GR LRP+ E YG ++ AVAVV K S + L++L+G KSCHT
Sbjct: 61 GGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQ-LDQLQGRKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPK 269
R+ GW+ P+ L + P VA+FF SCVP ID + +L ++C
Sbjct: 120 GRSAGWIIPMGILRPYLSWTESLEPLQGAVAKFF-SASCVPCIDRQAYP---NLCQLCKG 175
Query: 270 ATRVTYTP------------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKG 317
+CL+ G GDVAF+K+ V + + E +
Sbjct: 176 EGENQCACSSREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPEKADRDQY-------- 227
Query: 318 GRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAIL 377
E LC RAPV +C+L VP H VV + D I +
Sbjct: 228 -------------ELLCLNNSRAPVDAFKECHLAQVPSHAVVARSVDGKE--DLIWKLLS 272
Query: 378 SAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP---DQATDVETNYSNNMLS 431
A + F K K F+LFGS G+ D+LF + A G +P D A + + Y + +
Sbjct: 273 KAQEKFGKNKSRSFQLFGSPPGQRDLLFKDSALGFLRIPSKVDSALYLGSRYLTTLKN 330
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter,
transferrin R serum, metal transport; HET: P6G; 2.10A
{Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A*
3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Length = 698
Score = 189 bits (479), Expect = 3e-53
Identities = 103/442 (23%), Positives = 153/442 (34%), Gaps = 66/442 (14%)
Query: 9 PCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLI--------NVLG 60
C A P VA + ++Q + + ++L
Sbjct: 259 DCHLAQVPSHTVVARS----MGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLF 314
Query: 61 IDSNSTAVDNKKTLHPTQYLQKANYEDVIG--------RVVKPIKPIRWCVSSPEGMSKC 112
DS + + YL + KP++WC S KC
Sbjct: 315 KDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTCPEAPTDECKPVKWCALSHHERLKC 374
Query: 113 LAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILK 172
+ S + EC ++++ C+ I +G AD ++LD + K L P+L
Sbjct: 375 DEW-----SVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKC-GLVPVLA 428
Query: 173 EKYGNEKDL--------LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLE 224
E Y + AVAVV K++ + + LKG KSCHTA RT GW P+ L
Sbjct: 429 ENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYN 488
Query: 225 KGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDA---PASLEKICPKATRVTYT----P 277
K + C + EFF C PG ++ S +C + Y
Sbjct: 489 KI----NHCRF----DEFF-SEGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGA 539
Query: 278 LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKG 337
+CL GDVAF+K V + K + + E LC G
Sbjct: 540 FRCLVEK-GDVAFVKHQTVP-------------QNTGGKNPDPWAKNLNEKDYELLCLDG 585
Query: 338 GRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFM 397
R PV + A+C+L P H VVT K +R + F LF S
Sbjct: 586 TRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFRS-- 643
Query: 398 GKPDVLFLNPATGVEVLPDQAT 419
D+LF + + L D+ T
Sbjct: 644 ETKDLLFRDDTVCLAKLHDRNT 665
Score = 176 bits (447), Expect = 8e-49
Identities = 104/340 (30%), Positives = 147/340 (43%), Gaps = 46/340 (13%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDA--AFSRDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K +RWC S +KC +F+D + P C ++ S C++ IA AD +T
Sbjct: 21 PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVT 80
Query: 153 LDATEAVL-GRKNLNLRPILKEKYGNEKDL----LAVAVVNKNSKVKSLEELKGLKSCHT 207
LDA NL+P++ E YG+++D AVAVV K+S + + +L+G KSCHT
Sbjct: 81 LDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQ-MNQLRGKKSCHT 139
Query: 208 AYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKIC 267
R+ GW P+ L P K VA FF GSC P + L ++C
Sbjct: 140 GLGRSAGWNIPIGLLYCDLPE--PRKPLEKAVANFF-SGSCAPC---ADGTDFPQLCQLC 193
Query: 268 PKATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
P T +CLK G GDVAF+K + + + +
Sbjct: 194 PGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQY----------- 242
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E LC R PV + DC+L VP H VV + D I + A
Sbjct: 243 ----------ELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKE--DLIWELLNQAQ 290
Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+ F K K + F+LF S GK D+LF + A G +P +
Sbjct: 291 EHFGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVPPRMD 329
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily,
lyase inhibitor; 2.40A {Mus musculus}
Length = 687
Score = 188 bits (478), Expect = 4e-53
Identities = 91/453 (20%), Positives = 158/453 (34%), Gaps = 72/453 (15%)
Query: 2 KLLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLI----- 56
+ ++ C A P VA ++ + + +
Sbjct: 239 RPVEEYEQCYLARVPSHVVVARS----VDGKEDSIQELLRVAQEHFGKDKSSPFQLFGSP 294
Query: 57 ---NVLGIDSNSTAVDNKKTLHPTQYLQKANYEDV--IGRVVKPIKPIRWCVSSPEGMSK 111
++L D+ + + + + YL + R ++ + ++WC + +K
Sbjct: 295 HGEDLLFTDAAHGLLRVPRKIDISLYLGYEFLSAFRNLKRGLEDSQRVKWCAVGQQERTK 354
Query: 112 CLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPIL 171
C + S C E++ + C+ G AD ++LD A + L P+L
Sbjct: 355 CDQW-----SAVSGGALACATEETPEDCIAATMKGEADAMSLDGGFAYVAGHC-GLVPVL 408
Query: 172 KEKYGNEKDLL---------------AVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWV 216
E Y + VAVV K+ + + L+G KSCHTA + GW
Sbjct: 409 AENYLSTHSSGRLGSKCVNAPLEGYYVVAVVKKSDVGITWKSLQGKKSCHTAVGTSEGWN 468
Query: 217 APVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEK-----DAPASLEKICPKAT 271
P+ + ++ SC + F SC PG D + + +C
Sbjct: 469 VPMGLIYDQT----GSCKFDA-----FFSRSCAPGSDPDSPLCALCVGGNNPAHMCAANN 519
Query: 272 RVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGD 327
Y L+CL DVAF+K V ++ K
Sbjct: 520 AEGYHGSSGALRCLVEKG-DVAFMKHPTV-------------LQNTDGKNPEPWAKGLKH 565
Query: 328 YEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKP 387
+ E LC G R PV++A C+L VP V + K+ D +R + + +LF +
Sbjct: 566 EDFELLCLDGTRKPVTEAQSCHLARVPNRAVFSRKDKA----DFVRRILFNQQELFGRNG 621
Query: 388 EIFKLFGSFM-GKPDVLFLNPATGVEVLPDQAT 419
+ +F F D+LF + + L D+ T
Sbjct: 622 FEYMMFQMFESSAKDLLFSDDTECLSNLQDKTT 654
Score = 170 bits (430), Expect = 1e-46
Identities = 97/346 (28%), Positives = 144/346 (41%), Gaps = 56/346 (16%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDA--AFSRDIRPPFECNREKSSKVCLKLIADGAADVIT 152
P K IRWCV S +KC +F+D P C R+ S C++ I+ D +T
Sbjct: 8 PEKTIRWCVVSDHEATKCSSFRDNMKKVLPAGGPAVTCVRKMSHPECIRDISANKVDAVT 67
Query: 153 LDATEAVL-GRKNLNLRPILKEKYGNEKDLL----AVAVVNKNSKVKSLEELKGLKSCHT 207
+D + +L+PI+ E YG++ D VA+ K + L +L+G KSCHT
Sbjct: 68 VDGALVAEADLPHHSLKPIMAEYYGSKDDPKTHYYVVAMAKKGTGF-QLNQLRGKKSCHT 126
Query: 208 AYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKIC 267
+ GW P+ LL G + A FF SCVP D + SL ++C
Sbjct: 127 GLGWSAGWYVPLSTLLPSGSRETA-------AATFF-SSSCVPCADGKMFP---SLCQLC 175
Query: 268 PKATRVTYTP------------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315
L+CL+ G DV+F+K + V +A+ +
Sbjct: 176 AGKGTDKCACSSREPYFGSWGALKCLQDGTADVSFVKHLTVFEAMPTKADRDQY------ 229
Query: 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHA 375
E LC R PV + C L VP H+VV + D+I+
Sbjct: 230 ---------------ELLCMDNTRRPVEEYEQCYLARVPSHVVVARSVDGKE--DSIQEL 272
Query: 376 ILSAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATD 420
+ A + F K K F+LFGS G+ D+LF + A G+ +P +
Sbjct: 273 LRVAQEHFGKDKSSPFQLFGSPHGE-DLLFTDAAHGLLRVPRKIDI 317
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1-
butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB;
1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A*
3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 2b6d_A*
2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A*
2dwa_A* 2dwh_A* ...
Length = 335
Score = 180 bits (457), Expect = 5e-53
Identities = 87/357 (24%), Positives = 131/357 (36%), Gaps = 54/357 (15%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
+ WC PE KC + S+ C ++ C+ L+ G AD + LD
Sbjct: 2 TRVVWCAVGPEEQKKCQQW-----SQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGG 56
Query: 157 EAVLGRKNLNLRPILKEKYGNEKDL------------LAVAVVNKNSKVKSLEELKGLKS 204
K L P+L E + K LAVAVV K ++ + LK KS
Sbjct: 57 YIYTAGKC-GLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKS 115
Query: 205 CHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEK-----DA 259
CHTA RT GW P+ ++ + SC + + ++ SC PG D + +
Sbjct: 116 CHTAVDRTAGWNIPMGLIV----NQTGSCAFDEFFSQ-----SCAPGADPKSRLCALCAG 166
Query: 260 PASLEKICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCS 315
C ++ Y +CL GDVAF+K V E
Sbjct: 167 DDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTV-------------WENTNG 213
Query: 316 KGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHA 375
+ + LC G R PV++A C+L V P H VV+ + ++ + H
Sbjct: 214 ESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQ 273
Query: 376 ILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDVE---TNYSNNM 429
P+ F LF S ++LF + + L + T E T Y +
Sbjct: 274 QALFGKNGKNCPDKFCLFKS--ETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAI 328
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP
metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B
1suv_E
Length = 342
Score = 176 bits (447), Expect = 2e-51
Identities = 92/338 (27%), Positives = 132/338 (39%), Gaps = 46/338 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC +S + EC ++++ C+ I +G AD ++LD
Sbjct: 3 KPVKWCALSHHERLKC-----DEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGG 57
Query: 157 EAVLGRKNLNLRPILKEKYGNEKDL--------LAVAVVNKNSKVKSLEELKGLKSCHTA 208
+ K L P+L E Y + AVAVV K++ + + LKG KSCHTA
Sbjct: 58 FVYIAGKC-GLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 116
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDA---PASLEK 265
RT GW P+ L K + C + EFF C PG ++ S
Sbjct: 117 VGRTAGWNIPMGLLYNKI----NHCRF----DEFF-SEGCAPGSKKDSSLCKLCMGSGLN 167
Query: 266 ICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
+C + Y +CL GDVAF+K V + K
Sbjct: 168 LCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVP-------------QNTGGKNPDPW 213
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ + E LC G R PV + A+C+L P H VVT K +R
Sbjct: 214 AKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGS 273
Query: 382 LFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+ F LF S D+LF + + L D+ T
Sbjct: 274 NVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 309
Score = 28.7 bits (63), Expect = 4.3
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 15/105 (14%)
Query: 9 PCTWAARPWPGFVAN-DRIEVNTQDLTQLRNYISQLN-------KLGESSGNDWLINVLG 60
C A P V D+ + L Q ++ L S D L
Sbjct: 239 NCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFRSETKDLLFR--- 295
Query: 61 IDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVK--PIKPIRWCV 103
D +YL + Y +G + K + C
Sbjct: 296 -DDTVCLAKLHDRNTYEKYLGE-EYVKAVGNLRKCSTSSLLEACT 338
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal
transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2
PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A*
1iq7_A*
Length = 686
Score = 170 bits (432), Expect = 9e-47
Identities = 104/448 (23%), Positives = 149/448 (33%), Gaps = 73/448 (16%)
Query: 9 PCTWAARPWPGFVANDRIEVN------TQDLTQLRNYISQLNKLGESSG--NDWLINVLG 60
C WA VA D +V ++ + L G + L ++L
Sbjct: 241 TCNWARVAAHAVVARDDNKVEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLF 300
Query: 61 IDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKP------IRWCVSSPEGMSKCLA 114
DS + YL Y + + P I+WC + SKC
Sbjct: 301 KDSAIMLKRVPSLMDSQLYLGFEYYSAIQSMRKDQLTPSPRENRIQWCAVGKDEKSKCDR 360
Query: 115 FKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEK 174
+ + EC +K C+ I G AD + LD L P++ E+
Sbjct: 361 WSVVS-----NGDVECTVVDETKDCIIKIMKGEADAVALDGGLVYTAGVC-GLVPVMAER 414
Query: 175 YGNEKDL----------LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLE 224
Y +E AVAV K+S V LKG KSCHTA RT GWV P+ +
Sbjct: 415 YDDESQCSKTDERPASYFAVAVARKDSNVN-WNNLKGKKSCHTAVGRTAGWVIPMGLIHN 473
Query: 225 KGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAP------ASLEKICPKATRVTYT-- 276
+ E+F C PG + + C ++ Y
Sbjct: 474 R--------TGTCNFDEYF-SEGCAPGSPPNSRLCQLCQGSGGIPPEKCVASSHEKYFGY 524
Query: 277 --PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLC 334
L+CL DVAFI+ V E K + E LC
Sbjct: 525 TGALRCLVEKG-DVAFIQHSTVE-------------ENTGGKNKADWAKNLQMDDFELLC 570
Query: 335 SKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSK---KPEIFK 391
+ G RA V +CNL VP H VV K+ + IR + F + F
Sbjct: 571 TDGRRANVMDYRECNLAEVPTHAVVVRPEKA----NKIRDLLERQEKRFGVNGSEKSKFM 626
Query: 392 LFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+F S D+LF + + + + T
Sbjct: 627 MFES--QNKDLLFKDLTKCLFKVREGTT 652
Score = 170 bits (431), Expect = 1e-46
Identities = 97/347 (27%), Positives = 137/347 (39%), Gaps = 56/347 (16%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
P IRWC S KC +D ++ R C ++ + C+K IA+ AD I+LD
Sbjct: 3 PKSVIRWCTISSPEEKKCNNLRDL--TQQERISLTCVQKATYLDCIKAIANNEADAISLD 60
Query: 155 ATEAVL-GRKNLNLRPILKEKYGNEKD----LLAVAVVNKNSKVKSLEELKGLKSCHTAY 209
+ G L+PI E Y + + AVAVV K ++ + +L+G SCHT
Sbjct: 61 GGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFT-VNDLQGKTSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYY---KGVAEFFTGGSCVPGIDEEEKDAPASLEKI 266
R+ GW P+ L+ +G I+ + + VA+FF SCVPG E+K L +
Sbjct: 120 GRSAGWNIPIGTLIHRGAIEWEGIESGSVEQAVAKFF-SASCVPGATIEQK-----LCRQ 173
Query: 267 CPKATRVTYTP----------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSK 316
C + CLK G GDVAF+K VN+ +
Sbjct: 174 CKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPD-------------- 219
Query: 317 GGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAI 376
E E LC G R PV CN V H VV + +I +
Sbjct: 220 ---------QKDEYELLCLDGSRQPVDNYKTCNWARVAAHAVVARDDNKVEDIWSFLSKA 270
Query: 377 LSAADLFSKKPEIFKLFGSFMGKP----DVLFLNPATGVEVLPDQAT 419
S D F LFG K D+LF + A ++ +P
Sbjct: 271 QS--DFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPSLMD 315
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 45/318 (14%), Positives = 91/318 (28%), Gaps = 89/318 (27%)
Query: 1 MKLLQSETPCTWAARPWPGFVANDRIEVNTQDL-TQLRNYISQLNKLGESSGNDWLI--N 57
++ L + W +R I++ + +LR + + N L+ N
Sbjct: 202 LQKLLYQIDPNWTSRSDHS----SNIKLRIHSIQAELRRLLKS-----KPYENCLLVLLN 252
Query: 58 VLGIDSNST---AVDNK-KTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGM---S 110
V N+ A + K L T++ Q ++ + ++ E
Sbjct: 253 V----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 111 KCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIA----DGAA-----DVITLDATEAVLG 161
K L + D+ P ++ L +IA DG A + D ++
Sbjct: 309 KYLDCRPQ----DL-PREVL---TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 162 RKNLNLRP-ILKEKYGNEKDLLAVAVVNKNSKV--KSLEELKGLKSCHTAYMRTTGWVAP 218
L P ++ + L +V ++ + L + W
Sbjct: 361 SSLNVLEPAEYRKMF---DRL---SVFPPSAHIPTILLSLI---------------WFDV 399
Query: 219 VYN--------LLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEK---DAPASLEKIC 267
+ + L + L++K +P I E K + +L +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTIS----------IPSIYLELKVKLENEYALHRSI 449
Query: 268 PKATRVTYTPLQCLKSGD 285
Y + S D
Sbjct: 450 VDH----YNIPKTFDSDD 463
Score = 42.9 bits (100), Expect = 2e-04
Identities = 55/337 (16%), Positives = 99/337 (29%), Gaps = 100/337 (29%)
Query: 19 GFVANDRIEVNTQDLT-QLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVDNKKTLHPT 77
F+ I+ + + R YI Q ++L + N D+ A N L P
Sbjct: 92 KFLM-SPIKTEQRQPSMMTRMYIEQRDRL-------Y--N----DNQVFAKYNVSRLQPY 137
Query: 78 QYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMS---K-CLAFKDAAFSRDI--RPPF--- 128
L++A E ++P + + +G+ K +A D S + + F
Sbjct: 138 LKLRQALLE---------LRPAKNVLI--DGVLGSGKTWVA-LDVCLSYKVQCKMDFKIF 185
Query: 129 -----ECNREKS-----SKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEK-YGN 177
CN ++ K+ ++ + + + + LR +LK K Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-- 243
Query: 178 EKDLLAVAVVNKNSKVKSLEELKGLK-SCHTAYMRTT------------GWVAPVYNLLE 224
E LL V+ V++ + SC + TT +
Sbjct: 244 ENCLL---VL---LNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 225 KGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYTPLQC---- 280
L + +D +D P + P +
Sbjct: 296 MTLTPDEV-------KSLL--LKY---LDCRPQDLPREVLTT---------NPRRLSIIA 334
Query: 281 --LKSGDGDVAFIKQV---KVNKAIEEGLFKTDEIEY 312
++ G K V K+ IE L + EY
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate
binding protein, transport protein; 1.71A {Escherichia
coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Length = 321
Score = 45.2 bits (107), Expect = 3e-05
Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 38/176 (21%)
Query: 140 LKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLL-AVAVVNKNSKVKSLEE 198
++ + D+ A+ N + + + +V +VNK+S + +L +
Sbjct: 60 IQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLND 119
Query: 199 LKGLKSCHTAYM----RTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDE 254
L + T T+G++ P Y + K I +K G
Sbjct: 120 LLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISAS---DFKRT---VNAGH------- 166
Query: 255 EEKDAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEI 310
E +A A + + DVA ++K K E+
Sbjct: 167 -ETNALA-------------------VANKQVDVATNNTENLDKLKTSAPEKLKEL 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 52/324 (16%), Positives = 94/324 (29%), Gaps = 97/324 (29%)
Query: 33 LTQLRNYISQLNKLGESSGN--DWLINVLGI-------------DSNSTAVDN-KKTLHP 76
+ QL +Y+ LG + G +L G DS + + +K +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-- 300
Query: 77 TQYL-------QKANYEDVIGRVVKPIKPIRWCVSSPEG----MSKCLAFKDAAFSRDIR 125
L +A P + + + EG M +
Sbjct: 301 -TVLFFIGVRCYEA-----YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 126 PPFECNRE--KSSKVCLKLIADGAAD-VITLDATEAVLGRKNLNLRPILKEKYGNEKDLL 182
+ N +V + L+ +GA + V++ L NL LR K K + D
Sbjct: 355 ---KTNSHLPAGKQVEISLV-NGAKNLVVS--GPPQSLYGLNLTLR---KAKAPSGLD-- 403
Query: 183 AVAVVNKNSKVK-SLEELKGLKS-------CHTAYMRTTGWVAPVYNLLEKGLIKKD--- 231
S++ S +LK H+ + P +L+ K L+K +
Sbjct: 404 -------QSRIPFSERKLKFSNRFLPVASPFHSHLL------VPASDLINKDLVKNNVSF 450
Query: 232 -----SCPYYKGVAEFFTGGSCVPGIDEEEKDAPASL-EKIC------PKATRVTYTPLQ 279
P Y + F G + + + I T+ T
Sbjct: 451 NAKDIQIPVY----DTFDGSD----LRVLSGSISERIVDCIIRLPVKWETTTQFKAT--H 500
Query: 280 CLKSGDGDVAFIKQVKVNKAIEEG 303
L G G + + + ++G
Sbjct: 501 ILDFGPGGASGL--GVLTHRNKDG 522
Score = 43.9 bits (103), Expect = 1e-04
Identities = 45/248 (18%), Positives = 80/248 (32%), Gaps = 77/248 (31%)
Query: 19 GFVANDRIEVNTQDLT---------QLR-NYISQLNKLGESSGNDWLINVL-GIDSNSTA 67
GF D + N +LT ++R NY + + + G + I+ +ST+
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI-VDGKLKTEKIFKEINEHSTS 1716
Query: 68 V---DNKKTLHPTQYLQ-------KANYEDVIGRVVKPIKPIRWCV---------SSPEG 108
K L TQ+ Q KA +ED+ + + P ++
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD----ATFAGHSLGEYAALAS 1772
Query: 109 MSKCLAFKDAA---FSR-----DIRPPFECNREKS-------SKVCLKLIADGAADVITL 153
++ ++ + F R P E R +V + V+
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 154 DAT------EAVLGRKNLNLRPILKEKY---GNEKDLLAVAVVNKNSKVK---------- 194
E V N N+ ++Y G+ + L V V K++
Sbjct: 1833 VGKRTGWLVEIV----NYNVEN---QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 195 -SLEELKG 201
SLEE++G
Sbjct: 1886 LSLEEVEG 1893
Score = 41.6 bits (97), Expect = 6e-04
Identities = 51/292 (17%), Positives = 83/292 (28%), Gaps = 115/292 (39%)
Query: 132 REKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNS 191
RE S + + I DG TE + N + + +EK LL+
Sbjct: 1685 RENYSAMIFETIVDGKLK------TEKIFKEINEHSTSYT---FRSEKGLLS-------- 1727
Query: 192 KVKSLEELKGLKSCHTAY----MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGS 247
T + + A +L KGLI D+ F
Sbjct: 1728 --------------ATQFTQPALTLME-KAAFEDLKSKGLIPADA---------TF---- 1759
Query: 248 CVPGIDEEEKDAPA--SL-EKICPKATRVTYTPLQCLKSGDGDV----AFIKQVK----- 295
A SL E Y L L DV + ++ V
Sbjct: 1760 -------------AGHSLGE----------YAALASL----ADVMSIESLVEVVFYRGMT 1792
Query: 296 VNKAIEEGLFKTDEIEYLCSKGGRA---P--VSKAGDYE-IEYLCSKGGRAPVSKAADCN 349
+ A+ E S G P V+ + E ++Y+ + V K
Sbjct: 1793 MQVAVPRD-------ELGRSNYGMIAINPGRVAASFSQEALQYVVER-----VGKRTGWL 1840
Query: 350 LGVV----PPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFM 397
+ +V V + ++ T +L+ L +K +I +L S
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVT---NVLNFIKL--QKIDIIELQKSLS 1887
Score = 38.5 bits (89), Expect = 0.006
Identities = 64/431 (14%), Positives = 125/431 (29%), Gaps = 135/431 (31%)
Query: 104 SSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIAD-------GAADVITL--- 153
+ E + K L + + E ++ L L D+ L
Sbjct: 56 TPAELVGKFLGY--------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 154 ---DATEAVLGRKNL-----NLRPILKEKYGNEKD-LLAVAVVNKNSKVKS--------- 195
+ ++ K L R + K + + + L AV N+++ +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 196 --LEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIK-----KDSCPYY-KG--VAEFFTG 245
EEL+ L + Y V + + L + D+ + +G + E+
Sbjct: 168 DYFEELRDL---YQTY---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 246 GSCVPGIDEEEKD----APASLEKICP-----------KATRVT-YTPLQCLKSGDGDVA 289
S P KD P S CP ++ +TP + G
Sbjct: 222 PSNTPD-----KDYLLSIPIS----CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 290 FIKQVKVNKAIEEGLFKTDE---------IEYLCSKGGRA----PVS----KAGDYEIEY 332
+ + AI E + E I L G R P + + +E
Sbjct: 273 HSQGLVTAVAIAET--DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 333 --------LCSKG-GRAPVSKAAD-CN----------LGVV--PPHMVVTSNSKSNVEID 370
L + V + N + +V ++VV+ +S ++
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 371 TIRHAILSAADL------FSK-KPEIFKLFGSFMGKPDVLF----LNPATGVEVLPDQAT 419
+ + L FS+ K + F + P F L PA+ +++
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASP---FHSHLLVPAS--DLINKDLV 444
Query: 420 DVETNYSNNML 430
+++ +
Sbjct: 445 KNNVSFNAKDI 455
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural
genomics, joint center for structural genomics; HET:
UNL; 1.97A {Pseudomonas aeruginosa}
Length = 310
Score = 41.7 bits (98), Expect = 3e-04
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 141 KLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLL-AVAVVNKNSKVKSLEEL 199
+ + D+ A+ + + + ++ + NK+SK+ SLE++
Sbjct: 51 QGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDM 110
Query: 200 ----KGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGG 246
K L + T+G++ P Y + K + +K
Sbjct: 111 LANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVK--AFKRT---LNSS 156
>2j4u_S Lactotransferrin, lactoferrin; membrane protein/hydrolase, membrane
protein/hydrolase complex, iron, OMPC, porin, complex,
protease; 2.99A {Camelus dromedarius}
Length = 45
Score = 35.3 bits (81), Expect = 0.002
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVC 139
K +RWC +SP KC ++ + P C ++ S C
Sbjct: 2 SKKSVRWCTTSPAESKKCAQWQR-RMKKVRGPSVTCVKKTSRFEC 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.009
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 133 EKSS--KV--CLKLIADGAADVITLDAT 156
EK + K+ LKL AD +A + + AT
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT 45
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-
acetylglucosaminyltransferase; methylmercury derivative,
N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus
cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A*
2am3_A* 2am4_A* 2am5_A*
Length = 343
Score = 33.9 bits (77), Expect = 0.084
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 12 WAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVDNK 71
W W ++ + + + G S G + ++ I N V
Sbjct: 181 WPKAFWDDWMRRPEQRKGRACVRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVPFT 240
Query: 72 KTLHPTQYLQKANYEDVIGRVVKPIKPIR 100
+ YLQ+ Y+ V ++
Sbjct: 241 Q--LDLSYLQQEAYDRDFLARVYGAPQLQ 267
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA;
structural genomics; 2.60A {Methylobacillus flagellatus}
Length = 348
Score = 32.6 bits (74), Expect = 0.27
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 143 IADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKG 201
A G D ++ ++ + + L VV KNS KS+++LKG
Sbjct: 64 FASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYL----VVPKNSTAKSIKDLKG 119
Query: 202 LKSCHTAYMR-TTGWVAPVYNLLEKGLIKKD 231
K A R +A L +GL KD
Sbjct: 120 KK---IALHRGRPWELAFSNLLQSEGLTFKD 147
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin,
amino-acid biosynthesis, FAD, flavoprotein, methionine
biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli
k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A*
2fmn_A* 2fmo_A* 1b5t_A*
Length = 304
Score = 31.4 bits (72), Expect = 0.60
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 139 CLKLIADGAADV--ITL---DATEAVLGRKNLNLRPILKEKYGNE 178
L +G D TL + + A+ L +RP L E + +
Sbjct: 261 VKILSREGVKDFHFYTLNRAEMSYAIC--HTLGVRPGLLEHHHHH 303
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 30.8 bits (70), Expect = 0.74
Identities = 15/89 (16%), Positives = 21/89 (23%), Gaps = 18/89 (20%)
Query: 22 ANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVDNKKTLHPTQYLQ 81
+ DRI+ ++ N G G W + K H T
Sbjct: 141 STDRIKHASEKGILKNGKRWFPNPNGRLCGEVWHFSSQR-HKEKVNGKTVKLTHITP--- 196
Query: 82 KANYEDVIGRVVKPIKPIRWCV--SSPEG 108
KP I + SS
Sbjct: 197 ------------KPRDLIERIIRASSNPN 213
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-BIND protein; HET: CYS GOL;
1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Length = 283
Score = 30.4 bits (69), Expect = 1.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 183 AVAVVNKNSKVKSLEELKGLK 203
AV V + +S +KS+ ++KG+K
Sbjct: 146 AVLVAHNDSNIKSIADIKGVK 166
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein,
periplasmic-binding P transport protein; HET: MPO; 1.70A
{Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Length = 324
Score = 30.2 bits (68), Expect = 1.3
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 143 IADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKG 201
+ G+ D+ + + +L + + + + +V S ++++ +LKG
Sbjct: 75 LNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETI---LVPSKSALRTVADLKG 131
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein;
protein structure initiative II(PSI II), nysgxrc; 1.90A
{Streptococcus thermophilus lmg 18311}
Length = 268
Score = 30.0 bits (68), Expect = 1.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 183 AVAVVNKNSKVKSLEELKGLK 203
V V K+S + S+ + G
Sbjct: 109 QVLVTKKSSGIDSVAGMAGKT 129
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER
bacterium, transport protein; HET: LYS; 1.79A
{Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Length = 272
Score = 29.6 bits (67), Expect = 1.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 184 VAVVNKNSKVKSLEELKGLK 203
V +V + S VK+ +LKG
Sbjct: 130 VILVKQGSPVKNALDLKGKT 149
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, immune
system; 1.90A {Ehrlichia chaffeensis}
Length = 327
Score = 29.3 bits (66), Expect = 2.3
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 19/74 (25%)
Query: 140 LKLIADGAAD---VITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVA---------VV 187
L I D V + A G EK +L +A VV
Sbjct: 80 LNSIRYSNMDISIVQSDLEYYAYNGLGFY-------EKMLPMDNLRMLASLHKEYLTIVV 132
Query: 188 NKNSKVKSLEELKG 201
K+S + ++++KG
Sbjct: 133 KKSSNISVIDDIKG 146
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein,
glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus
thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Length = 314
Score = 29.3 bits (66), Expect = 2.8
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 140 LKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVA---------VVNKN 190
+ I G ++ A + + + K + A+A V K+
Sbjct: 64 INAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPV---KTIRALAALYPEVVHVVARKD 120
Query: 191 SKVKSLEELKGLK 203
+ ++++ +LKG +
Sbjct: 121 AGIRTVADLKGKR 133
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein
YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics,
PSI-2; 2.00A {Bacillus subtilis}
Length = 258
Score = 28.8 bits (65), Expect = 3.0
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 182 LAVAVVNKNSKVKSLEELKGLK 203
L + V+ N ++ +E+LKG +
Sbjct: 106 LKITVLQNNDTIRGIEDLKGKR 127
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A
{Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A*
1ecn_A* 1eco_A*
Length = 136
Score = 28.0 bits (62), Expect = 3.2
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 12/67 (17%)
Query: 381 DLFSKKPEIFKLFGSFMGKP-DVLFLNPA---------TGVEVLPDQATDVETNYSNNML 430
+F P I F F GK + + + + ++E + +
Sbjct: 26 AVFKADPSIMAKFTQFAGKDLESIKGTAPFETHANRIVGFFSKIIGELPNIEADVNT--F 83
Query: 431 SKVHARY 437
H
Sbjct: 84 VASHKPR 90
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport
protein; 1.75A {Escherichia coli}
Length = 308
Score = 29.0 bits (65), Expect = 3.6
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 143 IADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKG 201
+ G+ D+ + + + +L + E + +++ +V +NS +K++ +LKG
Sbjct: 49 LNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVI---LVAENSPIKTVADLKG 105
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine
transport system, protein structure initiative II(PSI
II); 2.06A {Legionella pneumophila subsp}
Length = 237
Score = 28.4 bits (64), Expect = 3.8
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 183 AVAVVNKNSKVKSLEELKGLK 203
+ + +SK+ + ++L G K
Sbjct: 92 SQYITTVDSKISTFDDLHGKK 112
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 28.4 bits (63), Expect = 4.1
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 148 ADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEEL-----KGL 202
+VI LDAT R L ++ + ++ +A + + K+ L
Sbjct: 89 CEVIALDATLQ--QRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTT 146
Query: 203 KSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCP 234
+T+Y + + L+ +++
Sbjct: 147 LHGYTSYTQGQLLYQNDFQFLKD-VLQSVDAK 177
>3qsl_A Putative exported protein; unknown, structural genomics,
PSI-biology, midwest center FO structural genomics,
MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella
bronchiseptica}
Length = 346
Score = 28.7 bits (64), Expect = 4.1
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 143 IADGAADVITLDATEAVLGR-KNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKG 201
+ G+ADV++ + + K R G + K +LKG
Sbjct: 81 VVGGSADVVSGAFEHTLSLQAKGQFYRAFAL--QGRAPMIGVGVSKKNLPGYKGPADLKG 138
Query: 202 LK 203
K
Sbjct: 139 RK 140
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural
genomics, unknown function; 2.30A {Bacillus subtilis}
Length = 171
Score = 27.5 bits (61), Expect = 5.9
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 344 KAADCNLGVVPPHM-VVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKPDV 402
K D + ++PPH+ + S + + D + + + A + SF +V
Sbjct: 22 KRYDPSYSLIPPHLTLRASFECAEEKADQLVSHLRNIAKESHPLVLKMTKYSSFAPVNNV 81
Query: 403 LFLNPA 408
+++
Sbjct: 82 IYIKAE 87
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system;
1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Length = 90
Score = 26.7 bits (58), Expect = 6.3
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 227 LIKKDSCPYYKGVAEFFTGGSCVPGIDE 254
++K + CP + C ID+
Sbjct: 57 VLKNNLCPSGSNIISNLFKEDCHQKIDD 84
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics,
GLUT seattle structural genomics center for infectious
disease; 2.40A {Burkholderia pseudomallei}
Length = 249
Score = 27.6 bits (62), Expect = 7.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 182 LAVAVVNKNSKVKSLEELKGLK 203
LA V N+ +KS+++L G
Sbjct: 111 LAAMVQANNTTIKSIDDLNGKV 132
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus,
protein transport, translocation, transport, transport
protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Length = 661
Score = 28.1 bits (62), Expect = 7.5
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 280 CLKSGDGDVA--FIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEY 332
L++G A + + K N E F T Y SK PV + EY
Sbjct: 162 LLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEY 216
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC
transport, cysteine uptake; 2.00A {Campylobacter jejuni}
SCOP: c.94.1.1
Length = 292
Score = 27.7 bits (62), Expect = 7.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 186 VVNKNSKVKSLEELKGLKSC 205
V K+S + S+E+LK
Sbjct: 138 AVPKDSNITSVEDLKDKTLL 157
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella
enterica subsp}
Length = 229
Score = 27.6 bits (62), Expect = 8.6
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 183 AVAVVNKNSKVKSLEELKGLK 203
+ VV + + +LKG K
Sbjct: 94 SAVVVTRKGAYHTFADLKGKK 114
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate,
transport, ABC transport, virulence factor, receptor;
1.49A {Campylobacter jejuni}
Length = 259
Score = 27.3 bits (61), Expect = 9.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 186 VVNKNSKVKSLEELKGLKSCHTA 208
+V K K KSL ++KG
Sbjct: 133 LVLKEKKYKSLADMKGANIGVAQ 155
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic
protein, arginine protein binding, transport protein;
1.92A {Chlamydia trachomatis}
Length = 242
Score = 27.2 bits (61), Expect = 9.9
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 182 LAVAVVNKNSKVKSLEELKGLK 203
+ +V K L +
Sbjct: 99 KHLVLVFKGENKHPLPLTQYRS 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.398
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,891,942
Number of extensions: 416379
Number of successful extensions: 915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 62
Length of query: 458
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 361
Effective length of database: 3,993,456
Effective search space: 1441637616
Effective search space used: 1441637616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)