RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11925
(458 letters)
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo
(Bubalus arnee bubalis) [TaxId: 89462]}
Length = 333
Score = 213 bits (544), Expect = 2e-66
Identities = 102/340 (30%), Positives = 142/340 (41%), Gaps = 41/340 (12%)
Query: 95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
P K +RWC S KC ++ + P C R S C++ I + AD +TLD
Sbjct: 2 PRKNVRWCTISQPEWLKCHRWQWR-MKKLGAPSITCVRRASVLECIRAITEKKADAVTLD 60
Query: 155 ATEAVL-GRKNLNLRPILKEKYGNEKDLL----AVAVVNKNSKVKSLEELKGLKSCHTAY 209
GR LRP+ E YG ++ AVAVV K S L++L+G SCHT
Sbjct: 61 GGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNF-QLDQLQGRNSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDA-----PASLE 264
R+ GW P+ L + P VA+FF SCVP +D + E
Sbjct: 120 GRSAGWNIPMGILRPYLSWTESLEPLQGAVAKFF-SASCVPCVDRQAYPNLCQLCKGEGE 178
Query: 265 KICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
C + R Y +CL+ G GDVAF+K+ V + + E +
Sbjct: 179 NQCACSPREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPEKADRDQY----------- 227
Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
E LC RAPV +C+L VP H VV + + D I + A
Sbjct: 228 ----------ELLCLNNTRAPVDAFKECHLAQVPSHAVVARSVDG--KEDLIWKLLSKAQ 275
Query: 381 DLFSKKPE-IFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+ F K F+LFGS G+ D+LF + A G +P +
Sbjct: 276 EKFGKNKSGSFQLFGSPPGQRDLLFKDSALGFLRIPSKVD 315
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 207 bits (528), Expect = 5e-64
Identities = 102/337 (30%), Positives = 142/337 (42%), Gaps = 39/337 (11%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
+ ++WC S +KC ++ R PP C + S C++ IA+ AD +TLD
Sbjct: 1 RSVQWCAVSQPEATKCFQWQRN-MRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGG 59
Query: 157 EAVL-GRKNLNLRPILKEKYGNEKDLLA---VAVVNKNSKVKSLEELKGLKSCHTAYMRT 212
G LRP+ E YG E+ V K L EL+GLKSCHT RT
Sbjct: 60 FIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGLRRT 119
Query: 213 TGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDA-----PASLEKIC 267
GW P+ L P VA FF SCVPG D+ + + E C
Sbjct: 120 AGWNVPIGTLRPFLDWTGPPEPIEAAVARFF-SASCVPGADKGQFPNLCRLCAGTGENKC 178
Query: 268 PKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVS 323
+++ Y +CL+ G GDVAFIK+ V + + + + +
Sbjct: 179 AFSSQEPYFSYSGAFKCLRDGAGDVAFIKESTVFEDLSDEAERDEY-------------- 224
Query: 324 KAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLF 383
E LC R PV K DC+L VP H VV N + D I + + A + F
Sbjct: 225 -------ELLCPDNTRKPVDKFKDCHLARVPSHAVVA--RSVNGKEDAIWNLLRQAQEKF 275
Query: 384 SKK-PEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
K F+LFGS G+ D+LF + A G +P +
Sbjct: 276 GKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRID 312
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 199 bits (507), Expect = 7e-61
Identities = 102/338 (30%), Positives = 144/338 (42%), Gaps = 46/338 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDA--AFSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
K +RWC S +KC +F+D + P C ++ S C++ IA AD +TLD
Sbjct: 1 KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLD 60
Query: 155 ATEAVL-GRKNLNLRPILKEKYGNEKD----LLAVAVVNKNSKVKSLEELKGLKSCHTAY 209
A NL+P++ E YG+++D AVAVV K+S + +L+G KSCHT
Sbjct: 61 AGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGF-QMNQLRGKKSCHTGL 119
Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPK 269
R+ GW P+ L P K VA FF GSC P + L ++CP
Sbjct: 120 GRSAGWNIPIGLLYCDLPE--PRKPLEKAVANFF-SGSCAPC---ADGTDFPQLCQLCPG 173
Query: 270 ATRVTYTP-------LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPV 322
T +CLK G GDVAF+K + + + +
Sbjct: 174 CGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQY------------- 220
Query: 323 SKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADL 382
E LC R PV + DC+L VP H VV + D I + A +
Sbjct: 221 --------ELLCLDNTRKPVDEYKDCHLAQVPSHTVVA--RSMGGKEDLIWELLNQAQEH 270
Query: 383 FSKK-PEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
F K + F+LF S GK D+LF + A G +P +
Sbjct: 271 FGKDKSKEFQLFSSPHGK-DLLFKDSAHGFLKVPPRMD 307
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 329
Score = 199 bits (507), Expect = 8e-61
Identities = 97/345 (28%), Positives = 139/345 (40%), Gaps = 58/345 (16%)
Query: 98 PIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATE 157
IRWC S KC +D ++ R C ++ + C+K IA+ AD ITLD +
Sbjct: 3 VIRWCTISSPEEKKCNNLRDL--TQQERISLTCVQKATYLDCIKAIANNEADAITLDGGQ 60
Query: 158 AVL-GRKNLNLRPILKEKYGNEKD----LLAVAVVNKNSKVKSLEELKGLKSCHTAYMRT 212
G L+PI E Y + + AVAVV K ++ ++ +L+G SCHT R+
Sbjct: 61 VFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEF-TVNDLQGKTSCHTGLGRS 119
Query: 213 TGWVAPVYNLLEKGLIKK---DSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPK 269
GW P+ LL +G I+ +S + VA+FF SCVPG L + C
Sbjct: 120 AGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFF-SASCVPG-----ATIEQKLCRQCKG 173
Query: 270 ATRVTYT----------PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
+ CLK G GDVAF+K VN+ +
Sbjct: 174 DPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPD----------------- 216
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
+ +Y E LC G R PV CN V H VV + +++ I + A
Sbjct: 217 ----QKDEY--ELLCLDGSRQPVDNYKTCNWARVAAHAVVAR---DDNKVEDIWSFLSKA 267
Query: 380 ADLFSKK-PEIFKLFGSFMGKP----DVLFLNPATGVEVLPDQAT 419
F F LFG K D+LF + A ++ +P
Sbjct: 268 QSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPSLMD 312
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 325
Score = 180 bits (457), Expect = 2e-53
Identities = 91/338 (26%), Positives = 129/338 (38%), Gaps = 46/338 (13%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
KP++WC S KC + S + EC ++++ C+ I +G AD ++LD
Sbjct: 1 KPVKWCALSHHERLKCDEW-----SVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGG 55
Query: 157 EAVLGRKNLNLRPILKEKYGNEKDL--------LAVAVVNKNSKVKSLEELKGLKSCHTA 208
+ K L P+L E Y + AVAVV K++ + + LKG KSCHTA
Sbjct: 56 FVYIAGKC-GLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 114
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDA---PASLEK 265
RT GW P+ L K EFF C PG ++ S
Sbjct: 115 VGRTAGWNIPMGLLYNKINHC--------RFDEFF-SEGCAPGSKKDSSLCKLCMGSGLN 165
Query: 266 ICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAP 321
+C + Y +CL GDVAF+K V + K
Sbjct: 166 LCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVP-------------QNTGGKNPDPW 211
Query: 322 VSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
+ + E LC G R PV + A+C+L P H VVT K +R
Sbjct: 212 AKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGS 271
Query: 382 LFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
+ F LF S D+LF + + L D+ T
Sbjct: 272 NVTDCSGNFCLFRS--ETKDLLFRDDTVCLAKLHDRNT 307
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId:
9913]}
Length = 344
Score = 178 bits (453), Expect = 1e-52
Identities = 88/342 (25%), Positives = 127/342 (37%), Gaps = 51/342 (14%)
Query: 99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158
+ WC PE KC + S+ C ++ C+ L+ G AD + LD
Sbjct: 4 VVWCAVGPEEQKKCQQW-----SQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYI 58
Query: 159 VLGRKNLNLRPILKEKYGNEKDL------------LAVAVVNKNSKVKSLEELKGLKSCH 206
K L P+L E + K LAVAVV K ++ + LK KSCH
Sbjct: 59 YTAGKC-GLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCH 117
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEK-----DAPA 261
TA RT GW P+ ++ + EFF SC PG D + +
Sbjct: 118 TAVDRTAGWNIPMGLIVNQTGSCA--------FDEFF-SQSCAPGADPKSRLCALCAGDD 168
Query: 262 SLEKICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKG 317
C ++ Y +CL GDVAF+K V + S
Sbjct: 169 QGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGE-----------STA 217
Query: 318 GRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAIL 377
A K D+ LC G R PV++A C+L V P H VV+ + ++ + H
Sbjct: 218 DWAKNLKREDFR--LLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQA 275
Query: 378 SAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
P+ F LF S ++LF + + L + T
Sbjct: 276 LFGKNGKNCPDKFCLFKS--ETKNLLFNDNTECLAKLGGRPT 315
Score = 32.4 bits (73), Expect = 0.10
Identities = 15/100 (15%), Positives = 23/100 (23%), Gaps = 7/100 (7%)
Query: 9 PCTWAARPWPGFVAN----DRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSN 64
C A P V+ +E L + N+L D+
Sbjct: 245 SCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNT 304
Query: 65 STAVDNKKTLHPTQYLQKANYEDVIGRVVK--PIKPIRWC 102
+YL Y I + K + C
Sbjct: 305 ECLAKLGGRPTYEEYL-GTEYVTAIANLKKCSTSPLLEAC 343
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId:
9823]}
Length = 346
Score = 177 bits (450), Expect = 3e-52
Identities = 90/355 (25%), Positives = 128/355 (36%), Gaps = 53/355 (14%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
K +RWC E KC A+ S + EC ++++ C+ I G AD ++LD
Sbjct: 3 KKVRWCAIGHEETQKCDAW-----SINSGGKIECVSAENTEDCIAKIVKGEADAMSLDGG 57
Query: 157 EAVLGRKNLNLRPILKEKYGN---------EKDLLAVAVVNKNSKVK-SLEELKGLKSCH 206
+ K L P+L E Y EK LAVAVV K+S + LKG KSCH
Sbjct: 58 YIYIAGKC-GLVPVLAENYKTEGENCVNTPEKGYLAVAVVKKSSGPDLNWNNLKGKKSCH 116
Query: 207 TAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE------KDAP 260
TA RT GW P+ L K +FF G C PG +
Sbjct: 117 TAVDRTAGWNIPMGLLYNKINSC--------KFDQFF-GEGCAPGSQRNSSLCALCIGSE 167
Query: 261 ASLEKICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSK 316
+ + C Y +CL GDVAF+K V + K
Sbjct: 168 RAPGRECLANNHERYYGYTGAFRCLVEK-GDVAFVKDQVVQ-------------QNTDGK 213
Query: 317 GGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAI 376
+ E LC G R PV A +C+L P H VV + K + +
Sbjct: 214 NKDDWAKDLKQMDFELLCQNGAREPVDNAENCHLARAPNHAVVARDDKVTCVAEELLKQQ 273
Query: 377 LSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATD--VETNYSNNM 429
+ F +F S D+LF + + + + + +Y +
Sbjct: 274 AQFGRHVTDCSSSFCMFKS--NTKDLLFRDDTQCLARVGKTTYESYLGADYITAV 326
Score = 44.7 bits (105), Expect = 1e-05
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 9 PCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAV 68
C A P VA D + T +L +Q + + + + +
Sbjct: 244 NCHLARAPNHAVVARD--DKVTCVAEELLKQQAQFGRHVTDCSSSFCMFKSN-TKDLLFR 300
Query: 69 DNKKTLHPTQYLQKANYEDVIGR-VVKPIKPIRWCVSSPEGMSKC 112
D+ + L + K YE +G + + +R C +S + C
Sbjct: 301 DDTQCL---ARVGKTTYESYLGADYITAVANLRKCSTSKL-LEAC 341
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 352
Score = 166 bits (422), Expect = 4e-48
Identities = 81/343 (23%), Positives = 116/343 (33%), Gaps = 53/343 (15%)
Query: 97 KPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAT 156
I+WC + SKC + + EC +K C+ I G AD + LD
Sbjct: 9 NRIQWCAVGKDEKSKCDRWSVVS-----NGDVECTVVDETKDCIIKIMKGEADAVALDGG 63
Query: 157 EAVLGRKNLNLRPILKEKYGNEKDLL---------AVAVVNKNSKVKSLEELKGLKSCHT 207
L P++ E+Y +E V + + LKG KSCHT
Sbjct: 64 LVYTAGVC-GLVPVMAERYDDESQCSKTDERPASYFAVAVARKDSNVNWNNLKGKKSCHT 122
Query: 208 AYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDA------PA 261
A RT GWV P+ + + E+F C PG +
Sbjct: 123 AVGRTAGWVIPMGLIHNRTGT--------CNFDEYF-SEGCAPGSPPNSRLCQLCQGSGG 173
Query: 262 SLEKICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKG 317
+ C ++ Y L+CL GDVAFI+ V E K
Sbjct: 174 IPPEKCVASSHEKYFGYTGALRCLVEK-GDVAFIQHSTV-------------EENTGGKN 219
Query: 318 GRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAIL 377
+ E LC+ G RA V +CNL VP H VV K+ + IR +
Sbjct: 220 KADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVRPEKA----NKIRDLLE 275
Query: 378 SAADLFSKKPEIFKLFGSFMGK-PDVLFLNPATGVEVLPDQAT 419
F F F + D+LF + + + + T
Sbjct: 276 RQEKRFGVNGSEKSKFMMFESQNKDLLFKDLTKCLFKVREGTT 318
Score = 34.3 bits (78), Expect = 0.026
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 14/104 (13%)
Query: 9 PCTWAARPWPGFVANDRIEVNTQDL--TQLRNYIS-----QLNKLGESSGNDWLINVLGI 61
C A P V +DL Q + + + ES D L
Sbjct: 249 ECNLAEVPTHAVVVRPEKANKIRDLLERQEKRFGVNGSEKSKFMMFESQNKDLLFK---- 304
Query: 62 DSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVK--PIKPIRWCV 103
D ++ ++L + VI + P ++ C
Sbjct: 305 DLTKCLFKVREGTTYKEFL-GDKFYTVISSLKTCNPSDILQMCS 347
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos)
[TaxId: 8839]}
Length = 159
Score = 110 bits (275), Expect = 3e-29
Identities = 57/185 (30%), Positives = 77/185 (41%), Gaps = 43/185 (23%)
Query: 183 AVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKK---DSCPYYKGV 239
AVAVV K + +++L+G SCHT R+ GW P+ L+ +G I+ +S + V
Sbjct: 4 AVAVVKKGTDF-MIKDLRGKTSCHTGLGRSAGWNIPIGTLIHRGDIEWEGIESGSVEQAV 62
Query: 240 AEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYT----------PLQCLKSGDGDVA 289
A+FF SCVPG E+K L + C + QCLK G GDVA
Sbjct: 63 AKFF-SASCVPGATTEQK-----LCRQCKGDAKTKCLRNAPYSGYSGAFQCLKDGKGDVA 116
Query: 290 FIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCN 349
F+K V + E + +Y E LC G R PV CN
Sbjct: 117 FVKHTTVQENAPE---------------------EKDEY--ELLCLDGTRQPVDSYKTCN 153
Query: 350 LGVVP 354
V
Sbjct: 154 WARVA 158
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 159
Score = 108 bits (271), Expect = 1e-28
Identities = 58/178 (32%), Positives = 71/178 (39%), Gaps = 32/178 (17%)
Query: 183 AVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEF 242
AVAVV K L EL+GLKSCHT RT GW P+ L P VA F
Sbjct: 4 AVAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARF 62
Query: 243 FTGGSCVPGIDEEEKDAPASLEKICP--KATRVTYTP-------LQCLKSGDGDVAFIKQ 293
F SCVPG D+ + L K + P +CLK G GDVAFI++
Sbjct: 63 F-SASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLKDGAGDVAFIRE 121
Query: 294 VKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLG 351
V + ++ +Y E LC R PV K DC+L
Sbjct: 122 STV-------------------FEDLSDEAERDEY--ELLCPDNTRKPVDKFKDCHLA 158
>d1g8qa_ a.135.1.1 (A:) CD81 extracellular domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 90
Score = 27.6 bits (61), Expect = 1.0
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 186 VVNKNSKVKSLEELKG-LKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFT 244
+ + K +K+ H + G ++K + CP +
Sbjct: 18 ALQQAVVDDDANNAKAVVKTFHET-LDCCGSSTLTALTTS--VLKNNLCPSGSNIISNLF 74
Query: 245 GGSCVPGIDE 254
C ID+
Sbjct: 75 KEDCHQKIDD 84
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 28.4 bits (62), Expect = 2.1
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 269 KATRVTYTPLQCLKSGDGD---VAFIKQVKVNKAIEEGLFK 306
+T VT+ +K D A I++ V++A+ FK
Sbjct: 3 NSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFK 43
>d2fpna1 d.129.10.1 (A:1-214) Hypothetical protein YwmB {Bacillus
subtilis [TaxId: 1423]}
Length = 214
Score = 28.0 bits (62), Expect = 2.3
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 359 VTSNSKSNVEIDTIRHAILSAADLFSKKPEIFK-LFGSFMGKPD---------VLFLNPA 408
S + DT +F +K IF L G + +L A
Sbjct: 97 QMSLETPDSWNDTYEQFERETLGIFQEKVVIFTCLNGHLDDNMNIVLQKKANQLLNEFQA 156
Query: 409 TGVEVLPDQATDVETNYSN 427
VE + + + +++
Sbjct: 157 RSVEHVVEPNFVSISAFTD 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.398
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,684,295
Number of extensions: 77867
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 18
Length of query: 458
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,199,356
Effective search space: 443761720
Effective search space used: 443761720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.0 bits)