BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11928
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
+++ LSGGQK ++ LA T P +I+LDEPTN LD +S+ AL+ A+ E++GGVII++H
Sbjct: 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 957
Query: 131 ERLIRDTECTLWVIEN 146
++ +W +++
Sbjct: 958 AEFTKNLTEEVWAVKD 973
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E + +L FG + + LSGG K ++ALA L D+++LDEPTN+LD ++
Sbjct: 526 EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 112 ALADAINEYKGGVIIVSHDERLIRDTECTLWV-IENQTIEEIDGDFDDYRKE 162
L + +N I +SHD + D C + E + + G+F ++ K+
Sbjct: 586 WLVNYLNTCGITSITISHDSVFL-DNVCEYIINYEGLKLRKYKGNFTEFVKK 636
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSGEHLTA--EETPAEYLQRLF 47
+L P GE+ + RI QH+ H+ + ++TP+EY+Q F
Sbjct: 722 ELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRF 765
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
+++ LSGGQK ++ LA T P +I+LDEPTN LD +S+ AL+ A+ E++GGVII++H
Sbjct: 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 957
Query: 131 ERLIRDTECTLWVIEN 146
++ +W +++
Sbjct: 958 AEFTKNLTEEVWAVKD 973
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E + +L FG + LSGG K ++ALA L D+++LDEPTN+LD ++
Sbjct: 526 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 112 ALADAINEYKGGVIIVSHDERLIRDTECTLWV-IENQTIEEIDGDFDDYRKELLEA 166
L + +N I +SHD + D C + E + + G+F ++ K+ A
Sbjct: 586 WLVNYLNTCGITSITISHDSVFL-DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAA 640
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSGEHLTA--EETPAEYLQRLF 47
+L P GE+ + RI QH+ H+ + ++TP+EY+Q F
Sbjct: 722 ELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRF 765
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
+++ LSGGQK ++ LA T P +I+LDEPTN LD +S+ AL+ A+ E++GGVII++H
Sbjct: 892 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 951
Query: 131 ERLIRDTECTLWVIEN 146
++ +W +++
Sbjct: 952 AEFTKNLTEEVWAVKD 967
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E + +L FG + LSGG K ++ALA L D+++LDEPTN+LD ++
Sbjct: 520 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVA 579
Query: 112 ALADAINEYKGGVIIVSHDERLIRDTECTLWV-IENQTIEEIDGDFDDYRKELLEA 166
L + +N I +SHD + D C + E + + G+F ++ K+ A
Sbjct: 580 WLVNYLNTCGITSITISHDSVFL-DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAA 634
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSGEHLTA--EETPAEYLQRLF 47
+L P GE+ + RI QH+ H+ + ++TP+EY+Q F
Sbjct: 716 ELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRF 759
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 12 GELKKNHRLR--IGRFDQHSGEHLTAEETPAEYLQRLFNL-----PYEKARKQLGTFGLA 64
GE KK + +R IG Q+ + AE E + N P +K + GL
Sbjct: 68 GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD 127
Query: 65 GHAHTIKMKD-LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK-- 121
+ ++ LSGG+K RVA+A + ++ PD++ILDEP LD E L + ++K
Sbjct: 128 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187
Query: 122 -GGVIIVSHD-ERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
VI++SHD E +I + + + + + + FD R E LE
Sbjct: 188 GKTVILISHDIETVINHVDRVVVLEKGKKV------FDGTRMEFLE 227
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 12 GELKKNHRLR--IGRFDQHSGEHLTAEETPAEYLQRLFNL-----PYEKARKQLGTFGLA 64
GE KK + +R IG Q+ + AE E + N P +K + GL
Sbjct: 70 GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD 129
Query: 65 GHAHTIKMKD-LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG- 122
+ ++ LSGG+K RVA+A + ++ PD++ILDEP LD E L + ++K
Sbjct: 130 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 189
Query: 123 --GVIIVSHD-ERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
VI++SHD E +I + + + + + + FD R E LE
Sbjct: 190 GKTVILISHDIETVINHVDRVVVLEKGKKV------FDGTRMEFLE 229
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A + P +++LDE T+ LD ES + +A++ + G I+++H
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLN 1277
Query: 133 LIRDTECTLWVIENQTIEE 151
+ + +C + V+ N TI E
Sbjct: 1278 TVMNADC-IAVVSNGTIIE 1295
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A + P +++LDE T+ LD ES + A+++ G II++H
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614
Query: 133 LIRDTECTLWVIENQTIE 150
IR+ + + Q +E
Sbjct: 615 TIRNADLIISCKNGQVVE 632
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E+ L GL G + K +LSGG++ RVA+A N P ++ DEPT NLD +
Sbjct: 119 ERGEYLLSELGL-GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 112 ALAD---AINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEI 152
+ D INE +++V+H+ L T TL + + + + EI
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEI 221
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVS 128
K LSGGQK R+A+A + P +++LDE T+ LD ES + +A+++ + G I+++
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIA 1227
Query: 129 HDERLIRDTECTLWVIENQTIEE 151
H I++ + + VI+N ++E
Sbjct: 1228 HRLSTIQNADLIV-VIQNGKVKE 1249
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A + P +++LDE T+ LD ES + A+++ + G I+++H
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586
Query: 133 LIRDTEC 139
+R+ +
Sbjct: 587 TVRNADV 593
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVS 128
K LSGGQK R+A+A + P +++LDE T+ LD ES + +A+++ + G I+++
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIA 1227
Query: 129 HDERLIRDTECTLWVIENQTIEE 151
H I++ + + VI+N ++E
Sbjct: 1228 HRLSTIQNADLIV-VIQNGKVKE 1249
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A + P +++LDE T+ LD ES + A+++ + G I+++H
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586
Query: 133 LIRDTEC 139
+R+ +
Sbjct: 587 TVRNADV 593
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAINEYKGG-VII 126
K LSGGQ+ RVA+A N P +I+ DEPT LD E I L +NE G V++
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVV 201
Query: 127 VSHDERLIRDTECTLWVIENQT-IEEIDGDFDD 158
V+HD + R E +++ + + EE FDD
Sbjct: 202 VTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 10/146 (6%)
Query: 19 RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGHAHTIKM 72
R R+ QH H+T E E ++ L E+A K L G+ A
Sbjct: 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP 151
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID---ALADAINEYKGGVIIVSH 129
LSGGQ+ RV++A PDV++ DEPT+ LD E + + + E +++V+H
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
Query: 130 DERLIRDTECTLWVIENQTIEEIDGD 155
+ R + + IEE +GD
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEE-EGD 236
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAINEYKGG-VII 126
K LSGGQ+ RVA+A N P +I+ D+PT LD E I L +NE G V++
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 127 VSHDERLIRDTECTLWVIENQT-IEEIDGDFDD 158
V+HD + R E +++ + + EE FDD
Sbjct: 202 VTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
LSGGQ+ RVA+A L V+ILDE T+ LD ES A+ A++E + V++++H
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRL 539
Query: 132 RLIRDTECTLWVIENQTIEE 151
I + L V E + IE
Sbjct: 540 STIEQADEILVVDEGEIIER 559
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHDER 132
LSGGQK R+++A + LN P ++ILDE T+ LD+ES + +A++ +IV+H
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 133 LIRDTECTLWVIENQTIEE 151
I + + VIEN I E
Sbjct: 538 TITHAD-KIVVIENGHIVE 555
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAINEYKGG-VII 126
K LSGGQ+ RVA+A N P +I+ D+PT LD E I L +NE G V++
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 127 VSHDERLIRDTECTLWVIENQT-IEEIDGDFDD 158
V+HD + R E +++ + + EE FDD
Sbjct: 202 VTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 46.2 bits (108), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A L P +++LDE T+ LD E+ + +A++ G V++++H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLS 574
Query: 133 LIRD 136
I++
Sbjct: 575 TIKN 578
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDE 131
SGG+K R + ++ + P++ ILDE + LDI+++ +AD +N + G IIV+H +
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224
Query: 132 RLI 134
R++
Sbjct: 225 RIL 227
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDE 131
SGG+K R + ++ + P++ ILDE + LDI+++ +AD +N + G IIV+H +
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 205
Query: 132 RLI 134
R++
Sbjct: 206 RIL 208
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 45.8 bits (107), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A L P +++LDE T+ LD E+ + +A++ G V++++H
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543
Query: 133 LIRD 136
I++
Sbjct: 544 TIKN 547
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GV--IIVS 128
++LSGGQ+ RVALA + P +++LDEP +NLD D+ + E + GV ++VS
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 129 HD 130
HD
Sbjct: 199 HD 200
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 18/134 (13%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES-- 109
++ +K L GL+G A + +LSGGQK R+A+A + + LDEP + LD S
Sbjct: 119 KRIKKVLELVGLSGLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 110 --IDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTI-------EEIDGDFDD-- 158
L NE K G+I+V+H+ + D + L I N TI E ++ +FDD
Sbjct: 178 EIFQVLESLKNEGK-GIILVTHELEYLDDMDFIL-HISNGTIDFCGSWEEFVEREFDDVE 235
Query: 159 --YRKELLEALGEV 170
++ +L + G++
Sbjct: 236 IPFKWKLWKKCGKI 249
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A +N P ++I DE T+ LD ES + +++ G VII++H
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 201
Query: 133 LIRDTECTLWVIENQTIEE 151
+++ + + + + + +E+
Sbjct: 202 TVKNADRIIVMEKGKIVEQ 220
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A +N P ++I DE T+ LD ES + +++ G VII++H
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 201
Query: 133 LIRDTECTLWVIENQTIEE 151
+++ + + + + + +E+
Sbjct: 202 TVKNADRIIVMEKGKIVEQ 220
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A +N P ++I DE T+ LD ES + +++ G VII++H
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199
Query: 133 LIRDTECTLWVIENQTIEE 151
+++ + + + + + +E+
Sbjct: 200 TVKNADRIIVMEKGKIVEQ 218
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A +N P ++I DE T+ LD ES + +++ G VII++H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205
Query: 133 LIRDTECTLWVIENQTIEE 151
+++ + + + + + +E+
Sbjct: 206 TVKNADRIIVMEKGKIVEQ 224
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHD 130
LSGGQ+ RVA+A + PDV+++DEP +NLD + A+ I + K I V+HD
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
Query: 131 E 131
+
Sbjct: 203 Q 203
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHD 130
LSGGQ+ RVA+A + PDV+++DEP +NLD + A+ I + K I V+HD
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
Query: 131 E 131
+
Sbjct: 202 Q 202
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 48 NLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN 103
N P ++ +++ L GL G H +LSGGQK RVA+A + P V++ DE T+
Sbjct: 111 NTPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 104 NLD---IESIDALADAINEYKG-GVIIVSHDERLI-RDTECTLWVIENQTIEE 151
LD SI L IN G +++++H+ ++ R +C + + IE+
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A +N P ++I D+ T+ LD ES + +++ G VII++H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205
Query: 133 LIRDTECTLWVIENQTIEE 151
+++ + + + + + +E+
Sbjct: 206 TVKNADRIIVMEKGKIVEQ 224
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
LSGGQ+ RVA+A + P+V++LDEP +NLD +E L E + V+HD
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSI 176
+ + VI I ++ + Y K + +G + NP +
Sbjct: 194 QAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLGNPPM 239
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A L ++ILDE T+ LD ES A+ A++E + ++++H
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 133 LIRDTECTLWVIENQTIEE 151
I + + V+E+ I E
Sbjct: 541 TIEKAD-EIVVVEDGVIVE 558
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 43.5 bits (101), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A L ++ILDE T+ LD ES A+ A++E + ++++H
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 133 LIRDTECTLWVIENQTIEE 151
I + + V+E+ I E
Sbjct: 541 TIEQAD-EIVVVEDGIIVE 558
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 46 LFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEP 101
L N P ++ +++ L GL G H +LSGGQK RVA+A + P V++ D+
Sbjct: 132 LDNTPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQA 190
Query: 102 TNNLD---IESIDALADAINEYKG-GVIIVSHDERLI-RDTECTLWVIENQTIEE 151
T+ LD SI L IN G +++++H+ ++ R +C + + IE+
Sbjct: 191 TSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA 112
KA + L GL AH LSGGQ RVA+A P +++ DEPT+ LD E +
Sbjct: 118 KAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 176
Query: 113 LADAINEYKG---GVIIVSHDERLIRDT 137
+ + + +++V+H+ R+
Sbjct: 177 VLSVMKQLANEGMTMVVVTHEMGFAREV 204
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E R Q+G GL LSGG+K RVA+A L AP +I+LDE T+ LD +
Sbjct: 178 EGYRTQVGERGL----------KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 112 ALADAINEYKGG--VIIVSH 129
A+ ++ + I+V+H
Sbjct: 228 AIQASLAKVCANRTTIVVAH 247
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIV 127
++DLSGG+ RVA+A L D+ +LDEP+ LD+E A++ AI + + ++V
Sbjct: 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 128 SHDERLIRDTECTLWVIENQ 147
HD +I L V E +
Sbjct: 529 EHDVLMIDYVSDRLIVFEGE 548
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIV 127
+ LSGG+ RVA+A L DEP++ LDI +A I NE K V++V
Sbjct: 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK-AVLVV 284
Query: 128 SHD 130
HD
Sbjct: 285 EHD 287
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIV 127
++DLSGG+ RVA+A L D+ +LDEP+ LD+E A++ AI + + ++V
Sbjct: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Query: 128 SHDERLIRDTECTLWVIENQ 147
HD +I L V E +
Sbjct: 515 EHDVLMIDYVSDRLIVFEGE 534
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIV 127
+ LSGG+ RVA+A L DEP++ LDI +A I NE K V++V
Sbjct: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK-AVLVV 270
Query: 128 SHD 130
HD
Sbjct: 271 EHD 273
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA 112
KA + L GL AH LSGGQ RVA+A P +++ DEPT+ LD E +
Sbjct: 139 KAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 197
Query: 113 LADAINEYKG---GVIIVSHDERLIRDT 137
+ + + +++V+H+ R+
Sbjct: 198 VLSVMKQLANEGMTMVVVTHEMGFAREV 225
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GV--IIVS 128
++LSG Q+ RVALA + P +++LDEP +NLD D+ + E + GV ++VS
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 129 HD 130
HD
Sbjct: 199 HD 200
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K ++LSGGQ+ RVAL + P V ++DEP +NLD
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 48 NLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN 103
N P ++ +++ L GL G H +LSGGQK RVA+A + P V++ D+ T+
Sbjct: 134 NTPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATS 192
Query: 104 NLD---IESIDALADAINEYKG-GVIIVSHDERLI-RDTECTLWVIENQTIEE 151
LD SI L IN G +++++H+ ++ R +C + + IE+
Sbjct: 193 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGG++ R+A+A L P ++I DE T++LD ++ A+ + + +II++H
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215
Query: 133 LIRDTECTLWVIENQTIEE 151
I E + + + + +E+
Sbjct: 216 TISSAESIILLNKGKIVEK 234
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
+SGGQ+ R+A+A L P +++LDE T +LD ES + A++ G ++++H
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199
Query: 133 LIRDTECTLWVIENQ 147
I D + ++ + Q
Sbjct: 200 TIVDADKIYFIEKGQ 214
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K K LSGGQ+ RVA+ + P V +LDEP +NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
LS GQK RVA+A + + P V+ILDEPT LD E + L + E +II +HD
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K K LSGGQ+ RVA+ + P V +LDEP +NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDE 131
SGG+K R + +L + P +LDE + LDI+++ +A +N +G G ++++H +
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 132 RLI 134
R++
Sbjct: 204 RIL 206
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
LSGGQ+ R+A+A +N P ++I DE T+ LD ES
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
LSGGQ+ R+A+A +N P ++I DE T+ LD ES
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K LSGGQ+ RVALA + P V++ DEP +NLD
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K ++LSGGQ+ RVAL + P V + DEP +NLD
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K K LSGGQ+ RVA+ + P V +LD+P +NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 65 GHAHTIKMKD--LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----N 118
G AH + K LSGG++ RVALA + P +++LDEP + +D+++ L + +
Sbjct: 115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
Query: 119 EYKGGVIIVSHD 130
E+ ++ V+HD
Sbjct: 175 EFDVPILHVTHD 186
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIV 127
+ +LSGG+ RVA+A L D+ +LDEP+ LD+E A++ AI + + ++V
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 128 SHDERLIRDTECTLWVIENQ 147
HD I L V E +
Sbjct: 459 EHDVLXIDYVSDRLXVFEGE 478
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI---NEYKGGVIIVS 128
++ LSGG+ RVA+A L DEP++ LDI A AI +E V++V
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 129 HD 130
HD
Sbjct: 216 HD 217
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
LSGG K RV +A L P V+ILDEPT+ LD+ + I L + K +I V+HD
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDYRKEL 163
+ + + VI + E + F ++ L
Sbjct: 215 IAVAAELADKVAVIYGGNLVEYNSTFQIFKNPL 247
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 23/130 (17%)
Query: 1 MYAHCDLQPQQ-----GELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLP--YEK 53
+ H PQ+ G +K+N L+ GR D E + A + A+ + +LP Y+
Sbjct: 415 LRGHISAVPQETVLFSGTIKEN--LKWGREDATDDEIVEAAKI-AQIHDFIISLPEGYDS 471
Query: 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL 113
++ G ++ SGGQK R+++A + P V+ILD+ T+++D + +
Sbjct: 472 RVERGG-------------RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518
Query: 114 ADAINEYKGG 123
D + Y G
Sbjct: 519 LDGLKRYTKG 528
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 75 LSGGQKARVALAELTLN-------APDVIILDEPTNNLDI---ESIDALADAINEYKGGV 124
LSGG+ RV LA + L A +++LD+P N+LD+ ++D + A+++ +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAI 186
Query: 125 IIVSHD 130
++ SHD
Sbjct: 187 VMSSHD 192
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI----DALADAINEYKGGVIIVS 128
LSGGQ+ VALA + P V+ILD+ T+ LD S L ++ Y V++++
Sbjct: 153 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 212
Query: 129 HDERLIRDTECTLWVIENQTIEE 151
L+ + L+ +E I E
Sbjct: 213 QHLSLVEQADHILF-LEGGAIRE 234
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
DLS GQ+ +A+ L P ++ILDE T+N+D ++ ++ A+ + G II++H
Sbjct: 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRL 550
Query: 132 RLIRDTECTLWVIENQTIE 150
I++ + + + + + +E
Sbjct: 551 NTIKNADLIIVLRDGEIVE 569
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Query: 75 LSGGQKARVALAELTLN-------APDVIILDEPTNNLDI---ESIDALADAINEYKGGV 124
LSGG+ RV LA + L A +++LDEP N+LD+ ++D + A+++ +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAI 186
Query: 125 IIVSHD 130
+ SHD
Sbjct: 187 VXSSHD 192
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGG++ RVALA + P +++LDEP + LD
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 75 LSGGQKARVALA---ELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGG-VIIVS 128
LSGG+ RV LA + V ILDEPT L + I L + IN KG VI++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 129 HDERLIRDTECTLWVIE 145
H+ +I+ ++ W+I+
Sbjct: 924 HNLDVIKTSD---WIID 937
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIV 127
+ DLSGG+ ++ +A D+ +LD+P++ LD+E +A AI E K I+
Sbjct: 383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
Query: 128 SHD 130
HD
Sbjct: 443 DHD 445
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGG R+ +A L DV I D+P++ LD+ +A AI E VI+V HD
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD 196
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGV--IIVSH 129
+LSGGQ+ RVALA P V++ DEP +D + L + + + GV + V+H
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204
Query: 130 DE 131
D+
Sbjct: 205 DQ 206
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 75 LSGGQKARVALAELTLN-------APDVIILDEPTNNLDI---ESIDALADAINEYKGGV 124
LSGG+ RV LA + L A +++LDEP N+LD+ ++D + A+ + +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAI 186
Query: 125 IIVSHD 130
+ SHD
Sbjct: 187 VXSSHD 192
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 175
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 162
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
LSGGQ+ VALA + P ++ILD+ T+ LD + L ++ V++++H
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITH 215
Query: 130 DERLIRDTECTLWVIENQTIEE 151
L L++ E E+
Sbjct: 216 QLSLAERAHHILFLKEGSVCEQ 237
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 75 LSGGQKARVALA-ELTLNAPDVI-ILDEPTNNL---DIESIDALADAINEYKGGVIIVSH 129
LSGG+ R+ LA ++ VI +LDEPT L D E + + + VI+V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 130 DERLIRDTE 138
DE +IR+ +
Sbjct: 525 DEEVIRNAD 533
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 38/191 (19%)
Query: 1 MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLT--AEETPAEYLQRLFNLPYEKARKQ- 57
+Y CD+ +G+ L I + G++++ + T E L+ N+P K Q
Sbjct: 735 VYVECDVC--KGKRYNRETLEI----TYKGKNISDILDMTVDEALEFFKNIPSIKRTLQV 788
Query: 58 -----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPD----VIILDEPTNNLDIE 108
LG L A T LSGG+ R+ LA L D + ILDEPT L E
Sbjct: 789 LHDVGLGYVKLGQPATT-----LSGGEAQRIKLAS-ELRKRDTGRTLYILDEPTVGLHFE 842
Query: 109 SIDALADAINEY--KGG-VIIVSHDERLIRDTECTL-----------WVIENQTIEEIDG 154
+ L + ++ +G VI++ H+ +I++ + + +++ T EEI
Sbjct: 843 DVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902
Query: 155 DFDDYRKELLE 165
+ Y L+
Sbjct: 903 NPHSYTGRFLK 913
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LS G+K RV +A P V+ILDEP LD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDF 194
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
K+ LS GQ V + + P+++ LDEP N+D ++ I EY I+V+H+
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHE 184
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K +LSGGQK RV+LA + D+ + D+P + +D
Sbjct: 124 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGGQ+ VALA + P ++ILD T+ LD
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 75 LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VI 125
LSGG++ R+A++ ++ILDEPT LD E L + Y VI
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 126 IVSHDERL 133
+VSHDE L
Sbjct: 144 LVSHDEEL 151
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 75 LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VI 125
LSGG++ R+A++ ++ILDEPT LD E L + Y VI
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 148
Query: 126 IVSHDERL 133
+VSHDE L
Sbjct: 149 LVSHDEEL 156
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI 110
Y+ A + L L H + LSGGQ+ + +A + +I+LDEPT+ LD+ +
Sbjct: 106 YQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 111 DA----LADAINEYKGGVIIVSH 129
D L D V+ +H
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTH 187
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 75 LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VI 125
LSGG++ R+A++ ++ILDEPT LD E L + Y VI
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 126 IVSHDERL 133
+VSHDE L
Sbjct: 118 LVSHDEEL 125
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 75 LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VI 125
LSGG++ R+A++ ++ILDEPT LD E L + Y VI
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 126 IVSHDERL 133
+VSHDE L
Sbjct: 309 LVSHDEEL 316
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 47 FNLPYEKARKQLGTFGLAGHA--HTIKMKDLSGGQKARVALA-------ELTLNAPDVII 97
F+LPY + F + HA + + +LSGG++ VAL+ L N + II
Sbjct: 252 FDLPYSFV-ELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECII 310
Query: 98 LDEPTNNLDIESIDALADAINEYKG--GVIIVSHDERL 133
LDEPT LD LA+ + K +II++H L
Sbjct: 311 LDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 75 LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VI 125
LSGG++ R+A++ ++ILDEPT LD E L + Y VI
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 126 IVSHDERL 133
+VSHDE L
Sbjct: 329 LVSHDEEL 336
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEP 101
EKA K L L+ H + K +LSGGQ V + + P +I++DEP
Sbjct: 132 EKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEP 101
EKA K L L+ H + K +LSGGQ V + + P +I++DEP
Sbjct: 132 EKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 75 LSGGQKARVALAELTLNAP-DVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSH 129
LSGG+ RVA+ L L P D+ ++DEP+ LD E + I + K IV H
Sbjct: 468 LSGGELQRVAIV-LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Query: 130 D 130
D
Sbjct: 527 D 527
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVS 128
++ LSGG+ R A+ + DV + DEP++ LD++ A I VI V
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 129 HDERL---IRDTECTLW 142
HD + + D C ++
Sbjct: 279 HDLSVLDYLSDFVCIIY 295
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
LS G K + LA L+ +++LDEP+ +LD + + + + ++ + R+
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215
Query: 135 RDTEC-TLWVIENQTIEEIDGDFDDY 159
EC VIE + + D + Y
Sbjct: 216 AMLECDQFLVIEENKVRQYDSILELY 241
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 75 LSGGQKARVALA-EL--TLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVS 128
LSGG+ RV LA EL N + ILDEPT L ++ I L D ++ V+++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 129 HDERLIR 135
H+ +I+
Sbjct: 906 HNLDVIK 912
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEP 101
EKA K L L+ H + K +LSGGQ V + + P +I++D+P
Sbjct: 132 EKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQP 180
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 75 LSGGQKARVALA-EL--TLNAPDVIILDEPTNNLDIESIDALADAIN 118
LSGG+ RV LA EL N + ILDEPT L ++ I L D ++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH 892
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 75 LSGGQKARVALA-EL--TLNAPDVIILDEPTNNLDIESIDALADAIN 118
LSGG+ RV LA EL N + ILDEPT L ++ I L D ++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH 590
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDERL 133
G R+A++ ++ILDEPT LD E L + Y VI+VSHDE L
Sbjct: 63 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 121
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.8 bits (68), Expect = 0.47, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 75 LSGGQKARVALA-ELTLNAPDVI-ILDEPTNNLDIESIDALADAINEYKGG---VIIVSH 129
LS G+ R+ LA +L N V+ +LDEP+ L +AL A+ K G + +V H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 130 DERLIRDTECTLWVIE 145
D +IR + W+++
Sbjct: 440 DLDVIRRAD---WLVD 452
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LS GQ+A+++LA D+ +LD P LD+
Sbjct: 161 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 73 KDLSGGQKARVALAELTLN------APDVIILDEPTNNLDI----ESIDALADAINEYKG 122
+ LSGG++ RV LA + P + LDEPT+ LD+ ++ L +
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPL 199
Query: 123 GVIIVSHD 130
V V HD
Sbjct: 200 AVCCVLHD 207
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LS GQ+A+++LA D+ +LD P LD+
Sbjct: 160 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|3E82|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|E Chain E, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
Length = 364
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 85 LAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI 144
LA L LNA +++D+P LD + L A+ E K ++ V H+ R D VI
Sbjct: 83 LARLALNAGKHVVVDKPF-TLDXQEARELI-ALAEEKQRLLSVFHNRRWDSDYLGIRQVI 140
Query: 145 ENQT---IEEIDGDFDDYRKEL 163
E T ++ + FD +R E+
Sbjct: 141 EQGTLGAVKHFESHFDRFRPEV 162
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 73 KDLSGGQKARVA------LAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GG 123
+ LSGG++A ++ LAE+ D +DE ++LD E+ + +A + E +
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 124 VIIVSHD----ERLIRDTECTLWVIENQ 147
++ ++HD E R T V+ N+
Sbjct: 338 IVFITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 73 KDLSGGQKARVA------LAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GG 123
+ LSGG++A ++ LAE+ D +DE ++LD E+ + +A + E +
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 124 VIIVSHD----ERLIRDTECTLWVIENQ 147
++ ++HD E R T V+ N+
Sbjct: 338 IVFITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 63 LAGHAHTIK--MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADA 116
+AG IK + S G ++ +A + P + ILDEPT+ LD+ E L A
Sbjct: 133 IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 117 INEYKGGVIIVSHDERLIRDTEC-TLWVIENQTIEE 151
E G I+VS L + C + +I N TI E
Sbjct: 193 SQE--GLTILVSSHNMLEVEFLCDRIALIHNGTIVE 226
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 109 SIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDF 156
S++ L + I +Y + I+ D ++ C LW +E + +E+I +F
Sbjct: 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEF 418
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
L+ GQ+ VALA + P ++ILD T+ LD
Sbjct: 156 QLAVGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
pdb|3CQ4|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
Length = 376
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 83 VALAELTLNAPDVIILDEPTNNL-DIESIDALADAINEYKGGVII 126
VAL E+ PD++ + P N D+ S+D + IN G VI+
Sbjct: 152 VALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIV 196
>pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|C Chain C, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
Length = 369
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 83 VALAELTLNAPDVIILDEPTNNL-DIESIDALADAINEYKGGVII 126
VAL E+ PD++ + P N D+ S+D + IN G VI+
Sbjct: 155 VALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIV 199
>pdb|3SQN|A Chain A, Putative Mga Family Transcriptional Regulator From
Enterococcus Faecalis
pdb|3SQN|B Chain B, Putative Mga Family Transcriptional Regulator From
Enterococcus Faecalis
Length = 485
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 83 VALAELTLNAPDVIILDEPTNNLDI 107
V L++LTLN D+II + P ++LD+
Sbjct: 435 VELSQLTLNEADIIISNFPLDHLDL 459
>pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
pdb|3CQ6|C Chain C, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
pdb|3CQ6|E Chain E, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
Length = 369
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 31 EHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKD-------LSGGQKAR- 82
++L A E LQ+L R LG F + H I K +S G R
Sbjct: 93 DNLWAANGSNEILQQLLQAFGGPGRTALG-FQPSYSMHPILAKGTHTEFIAVSRGADFRI 151
Query: 83 ---VALAELTLNAPDVIILDEPTNNL-DIESIDALADAINEYKGGVII 126
VAL E+ PD++ + P N D+ S+D + IN G VI+
Sbjct: 152 DMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIV 199
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 109 SIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDF 156
S++ L + I +Y + I+ D ++ C LW +E + +E+I +F
Sbjct: 378 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEF 425
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 109 SIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDF 156
S++ L + I +Y + I+ D ++ C LW +E + +E+I +F
Sbjct: 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEF 418
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 109 SIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDF 156
S++ L + I +Y + I+ D ++ C LW +E + +E+I +F
Sbjct: 377 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEF 424
>pdb|2VHA|A Chain A, Debp
pdb|2VHA|B Chain B, Debp
Length = 287
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 121 KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSI 176
K GVI+V H R++ +NQ +++ G DY ++EA+ + +N P +
Sbjct: 15 KNGVIVVGH-----RESSVPFSYYDNQ--QKVVGYSQDYSNAIVEAVKKKLNKPDL 63
>pdb|2IA4|A Chain A, Crystal Structure Of Novel Amino Acid Binding Protein From
Shigella Flexneri
pdb|2IA4|B Chain B, Crystal Structure Of Novel Amino Acid Binding Protein From
Shigella Flexneri
Length = 287
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 121 KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSI 176
K GVI+V H R++ +NQ +++ G DY ++EA+ + +N P +
Sbjct: 15 KNGVIVVGH-----RESSVPFSYYDNQ--QKVVGYSQDYSNAIVEAVKKKLNKPDL 63
>pdb|3CEU|A Chain A, Crystal Structure Of Thiamine Phosphate
Pyrophosphorylase (Bt_0647) From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr268
pdb|3CEU|B Chain B, Crystal Structure Of Thiamine Phosphate
Pyrophosphorylase (Bt_0647) From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr268
Length = 210
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 32 HLTAEETPAEYLQRLFNLPYEKARKQLGT 60
HL ETPA Y +RL L EK +++ T
Sbjct: 31 HLRKPETPAXYSERLLTLIPEKYHRRIVT 59
>pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors
pdb|3UE8|B Chain B, Kynurenine Aminotransferase Ii Inhibitors
Length = 439
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA 114
SG Q+ + E+ +N D ++LDEP + ++S+ L
Sbjct: 115 SGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG 153
>pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex
pdb|2XH1|B Chain B, Crystal Structure Of Human Kat Ii-Inhibitor Complex
Length = 425
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA 114
SG Q+ + E+ +N D ++LDEP + ++S+ L
Sbjct: 115 SGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG 153
>pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|2VGZ|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase Ii
Length = 427
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA 114
SG Q+ + E+ +N D ++LDEP + ++S+ L
Sbjct: 117 SGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG 155
>pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase
Ii In Complex With Kynurenine
pdb|2R2N|B Chain B, The Crystal Structure Of Human Kynurenine Aminotransferase
Ii In Complex With Kynurenine
pdb|2R2N|C Chain C, The Crystal Structure Of Human Kynurenine Aminotransferase
Ii In Complex With Kynurenine
pdb|2R2N|D Chain D, The Crystal Structure Of Human Kynurenine Aminotransferase
Ii In Complex With Kynurenine
Length = 425
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA 114
SG Q+ + E+ +N D ++LDEP + ++S+ L
Sbjct: 115 SGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG 153
>pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|2QLR|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|2QLR|C Chain C, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|2QLR|D Chain D, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|3DC1|A Chain A, Crystal Structure Of Kynurenine Aminotransferase Ii
Complex With Alpha-Ketoglutarate
pdb|3DC1|B Chain B, Crystal Structure Of Kynurenine Aminotransferase Ii
Complex With Alpha-Ketoglutarate
pdb|3DC1|C Chain C, Crystal Structure Of Kynurenine Aminotransferase Ii
Complex With Alpha-Ketoglutarate
pdb|3DC1|D Chain D, Crystal Structure Of Kynurenine Aminotransferase Ii
Complex With Alpha-Ketoglutarate
Length = 425
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA 114
SG Q+ + E+ +N D ++LDEP + ++S+ L
Sbjct: 115 SGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG 153
>pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GDY|B Chain B, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE4|A Chain A, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE4|B Chain B, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE9|A Chain A, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE9|B Chain B, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE9|C Chain C, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE9|D Chain D, Kynurenine Aminotransferase Ii Inhibitors
Length = 439
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA 114
SG Q+ + E+ +N D ++LDEP + ++S+ L
Sbjct: 115 SGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG 153
>pdb|3BE5|A Chain A, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE5|B Chain B, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE5|C Chain C, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE5|D Chain D, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|A Chain A, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|B Chain B, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|C Chain C, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|D Chain D, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
Length = 297
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 93 PDVIILDEPTNNLDIESIDALAD--AINEYKGGVIIVSHDERLIRDTECTLWVIENQTIE 150
PD+II EPT N IE ++ +A +I+ KGG + + T+ L ++E +
Sbjct: 91 PDLII-TEPTRNTPIERLEKIAPTVSIDHLKGGAPEIYRKLAELTGTQSQLAILERRYQA 149
Query: 151 EIDG 154
+I+
Sbjct: 150 QINA 153
>pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE7|B Chain B, Kynurenine Aminotransferase Ii Inhibitors
Length = 439
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA 114
SG Q+ + E+ +N D ++LDEP + ++S+ L
Sbjct: 115 SGSQQGLXKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,690,340
Number of Sequences: 62578
Number of extensions: 235879
Number of successful extensions: 1297
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 152
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)