Query psy11928
Match_columns 184
No_of_seqs 200 out of 1129
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:33:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.2E-40 2.6E-45 254.8 13.6 154 2-159 47-223 (240)
2 COG1124 DppF ABC-type dipeptid 100.0 3.8E-38 8.3E-43 244.8 16.0 167 1-167 51-245 (252)
3 COG1135 AbcC ABC-type metal io 100.0 1.1E-38 2.4E-43 255.0 12.8 149 2-153 51-224 (339)
4 COG1127 Ttg2A ABC-type transpo 100.0 1.3E-37 2.7E-42 241.4 14.8 159 2-161 53-235 (263)
5 COG1125 OpuBA ABC-type proline 100.0 1.2E-37 2.6E-42 243.3 13.3 151 2-154 46-219 (309)
6 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-37 2.4E-42 243.7 12.6 144 1-147 47-207 (248)
7 COG1136 SalX ABC-type antimicr 100.0 1.1E-36 2.5E-41 237.1 13.9 146 2-150 50-221 (226)
8 COG1118 CysA ABC-type sulfate/ 100.0 1.9E-36 4.1E-41 241.9 13.2 153 2-158 47-224 (345)
9 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.5E-36 1.2E-40 236.5 15.5 155 2-159 49-225 (254)
10 COG3842 PotA ABC-type spermidi 100.0 2.1E-36 4.6E-41 249.1 11.5 159 1-161 49-226 (352)
11 COG1131 CcmA ABC-type multidru 100.0 1.8E-35 4E-40 241.0 15.9 157 2-161 50-226 (293)
12 COG3839 MalK ABC-type sugar tr 100.0 1E-35 2.2E-40 244.0 14.2 155 2-159 48-222 (338)
13 COG1120 FepC ABC-type cobalami 100.0 1.2E-35 2.6E-40 235.5 14.1 167 2-169 47-237 (258)
14 COG1122 CbiO ABC-type cobalt t 100.0 2.3E-35 4.9E-40 232.8 14.9 157 2-161 49-228 (235)
15 COG4175 ProV ABC-type proline/ 100.0 4.6E-35 1E-39 234.7 12.8 153 2-158 73-251 (386)
16 COG3638 ABC-type phosphate/pho 100.0 4.4E-35 9.6E-40 226.7 12.2 164 2-169 49-245 (258)
17 COG4555 NatA ABC-type Na+ tran 100.0 5.9E-35 1.3E-39 221.3 11.2 157 2-161 47-222 (245)
18 COG2884 FtsE Predicted ATPase 100.0 2E-34 4.3E-39 216.6 14.0 148 2-151 47-217 (223)
19 PRK13537 nodulation ABC transp 100.0 2.7E-34 5.9E-39 235.6 15.9 155 2-160 52-226 (306)
20 PRK11650 ugpC glycerol-3-phosp 100.0 4.2E-34 9E-39 238.6 16.9 154 2-159 49-222 (356)
21 TIGR02314 ABC_MetN D-methionin 100.0 4.8E-34 1E-38 236.9 17.2 153 2-158 50-227 (343)
22 TIGR01188 drrA daunorubicin re 100.0 7.4E-34 1.6E-38 232.6 16.5 155 2-160 38-212 (302)
23 TIGR03265 PhnT2 putative 2-ami 100.0 8.5E-34 1.8E-38 236.5 16.9 155 2-160 49-223 (353)
24 TIGR01186 proV glycine betaine 100.0 9.6E-34 2.1E-38 236.5 17.1 154 2-159 38-217 (363)
25 PRK11432 fbpC ferric transport 100.0 1.1E-33 2.4E-38 235.6 17.1 154 2-159 51-224 (351)
26 cd03261 ABC_Org_Solvent_Resist 100.0 1.9E-33 4.2E-38 222.3 16.9 153 2-158 45-223 (235)
27 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-33 4.8E-38 234.6 17.1 155 2-160 50-227 (362)
28 PRK13536 nodulation factor exp 100.0 2E-33 4.3E-38 233.2 16.6 155 2-160 86-260 (340)
29 PRK09452 potA putrescine/sperm 100.0 2.8E-33 6.1E-38 234.8 17.4 154 2-159 59-232 (375)
30 cd03226 ABC_cobalt_CbiO_domain 100.0 1.5E-33 3.2E-38 218.8 14.4 146 2-149 45-204 (205)
31 TIGR00960 3a0501s02 Type II (G 100.0 1.2E-33 2.5E-38 220.9 13.6 145 2-149 48-216 (216)
32 PRK11607 potG putrescine trans 100.0 3.5E-33 7.6E-38 234.5 17.3 154 2-159 64-237 (377)
33 COG1123 ATPase components of v 100.0 2.7E-33 5.8E-38 240.1 16.7 152 2-153 336-512 (539)
34 cd03259 ABC_Carb_Solutes_like 100.0 3E-33 6.4E-38 218.1 15.5 147 2-151 45-211 (213)
35 PRK15079 oligopeptide ABC tran 100.0 3.1E-33 6.7E-38 231.4 16.5 150 2-151 66-242 (331)
36 COG4148 ModC ABC-type molybdat 100.0 4.9E-34 1.1E-38 225.6 11.1 154 1-158 42-215 (352)
37 PRK10851 sulfate/thiosulfate t 100.0 3.7E-33 8E-38 232.7 17.0 154 2-159 47-224 (353)
38 PRK11000 maltose/maltodextrin 100.0 5.5E-33 1.2E-37 233.0 17.4 154 2-159 48-221 (369)
39 PRK11308 dppF dipeptide transp 100.0 5.1E-33 1.1E-37 229.8 16.9 151 2-152 60-236 (327)
40 TIGR01288 nodI ATP-binding ABC 100.0 5.9E-33 1.3E-37 227.4 17.1 154 2-159 49-222 (303)
41 TIGR03522 GldA_ABC_ATP gliding 100.0 6.2E-33 1.3E-37 227.1 16.3 155 2-160 47-220 (301)
42 COG0444 DppD ABC-type dipeptid 100.0 7.7E-33 1.7E-37 223.2 16.1 168 2-169 50-259 (316)
43 cd03265 ABC_DrrA DrrA is the A 100.0 6.2E-33 1.4E-37 217.4 15.2 147 2-151 45-212 (220)
44 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-32 2.5E-37 217.9 16.7 153 2-158 45-229 (236)
45 cd03256 ABC_PhnC_transporter A 100.0 1E-32 2.2E-37 218.6 16.4 155 2-160 46-233 (241)
46 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-32 2.4E-37 216.0 16.4 147 2-151 49-214 (220)
47 PRK10636 putative ABC transpor 100.0 9.7E-33 2.1E-37 245.7 18.1 160 2-161 357-517 (638)
48 PRK11153 metN DL-methionine tr 100.0 1.2E-32 2.5E-37 229.1 17.4 153 2-158 50-227 (343)
49 COG0488 Uup ATPase components 100.0 1.1E-32 2.4E-37 238.8 17.9 162 1-166 47-245 (530)
50 COG3840 ThiQ ABC-type thiamine 100.0 2.9E-33 6.3E-38 209.2 12.2 154 2-159 44-217 (231)
51 cd03235 ABC_Metallic_Cations A 100.0 7.8E-33 1.7E-37 215.8 15.0 147 2-149 44-210 (213)
52 PRK13651 cobalt transporter AT 100.0 1.1E-32 2.4E-37 225.9 16.3 155 2-159 52-252 (305)
53 PRK15064 ABC transporter ATP-b 100.0 2.3E-32 4.9E-37 239.0 19.4 159 2-161 364-525 (530)
54 TIGR01187 potA spermidine/putr 100.0 1.6E-32 3.5E-37 226.8 17.3 154 2-159 15-188 (325)
55 cd03268 ABC_BcrA_bacitracin_re 100.0 1.3E-32 2.9E-37 213.8 15.7 147 2-151 45-206 (208)
56 cd03264 ABC_drug_resistance_li 100.0 9.2E-33 2E-37 215.1 14.7 147 2-151 44-209 (211)
57 TIGR02315 ABC_phnC phosphonate 100.0 1.2E-32 2.7E-37 218.5 15.6 154 2-159 47-233 (243)
58 COG4181 Predicted ABC-type tra 100.0 3.9E-33 8.5E-38 206.8 11.8 148 1-151 54-226 (228)
59 PRK11144 modC molybdate transp 100.0 2E-32 4.2E-37 228.5 17.5 154 2-159 43-216 (352)
60 cd03296 ABC_CysA_sulfate_impor 100.0 2.2E-32 4.8E-37 216.8 16.9 153 2-158 47-223 (239)
61 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.4E-32 2.9E-37 214.1 15.2 147 2-151 43-209 (211)
62 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.8E-32 1E-36 237.9 20.4 174 2-176 367-546 (552)
63 TIGR03415 ABC_choXWV_ATP choli 100.0 2.1E-32 4.6E-37 229.5 17.3 154 2-159 69-252 (382)
64 cd03297 ABC_ModC_molybdenum_tr 100.0 2.1E-32 4.5E-37 213.6 15.9 147 2-151 42-212 (214)
65 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.5E-32 7.6E-37 219.4 17.4 154 2-159 69-248 (269)
66 cd03266 ABC_NatA_sodium_export 100.0 1.7E-32 3.6E-37 214.5 14.8 147 2-151 50-216 (218)
67 PRK13634 cbiO cobalt transport 100.0 2.3E-32 5.1E-37 222.6 16.2 156 2-159 52-233 (290)
68 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.7E-32 3.7E-37 214.5 14.8 144 2-149 49-218 (218)
69 PRK11247 ssuB aliphatic sulfon 100.0 3.2E-32 6.9E-37 218.3 16.6 147 2-151 57-214 (257)
70 PRK10070 glycine betaine trans 100.0 3.8E-32 8.1E-37 229.4 17.9 154 2-159 73-252 (400)
71 cd03269 ABC_putative_ATPase Th 100.0 2.6E-32 5.6E-37 212.4 15.3 147 2-151 45-208 (210)
72 cd03301 ABC_MalK_N The N-termi 100.0 2.5E-32 5.5E-37 212.8 15.1 147 2-151 45-211 (213)
73 PRK13643 cbiO cobalt transport 100.0 3.2E-32 6.9E-37 221.6 16.2 156 2-159 51-231 (288)
74 PRK11831 putative ABC transpor 100.0 3.6E-32 7.8E-37 219.3 16.2 154 2-159 52-231 (269)
75 PRK09536 btuD corrinoid ABC tr 100.0 3.4E-32 7.4E-37 229.8 16.5 154 2-159 48-226 (402)
76 PRK15093 antimicrobial peptide 100.0 5.9E-32 1.3E-36 223.9 17.5 151 2-152 52-240 (330)
77 PRK13637 cbiO cobalt transport 100.0 5.6E-32 1.2E-36 220.1 17.0 155 2-159 52-232 (287)
78 cd03258 ABC_MetN_methionine_tr 100.0 5E-32 1.1E-36 213.9 16.3 153 2-158 50-227 (233)
79 PRK10619 histidine/lysine/argi 100.0 5.8E-32 1.3E-36 216.6 16.8 155 2-159 50-239 (257)
80 PRK13647 cbiO cobalt transport 100.0 2.8E-32 6.1E-37 220.5 15.0 154 2-158 50-224 (274)
81 PRK11147 ABC transporter ATPas 100.0 6.1E-32 1.3E-36 240.6 18.4 159 2-161 364-528 (635)
82 TIGR02673 FtsE cell division A 100.0 2E-32 4.4E-37 213.5 13.5 144 2-148 47-214 (214)
83 TIGR02142 modC_ABC molybdenum 100.0 2.9E-32 6.3E-37 227.6 15.3 154 2-159 42-219 (354)
84 PLN03073 ABC transporter F fam 100.0 9.5E-32 2.1E-36 241.2 19.5 161 2-162 554-715 (718)
85 TIGR03411 urea_trans_UrtD urea 100.0 8E-32 1.7E-36 213.8 16.9 154 2-159 47-229 (242)
86 PRK10771 thiQ thiamine transpo 100.0 9.3E-32 2E-36 212.4 17.1 156 2-161 44-219 (232)
87 PRK15064 ABC transporter ATP-b 100.0 9.2E-32 2E-36 235.1 18.6 157 2-160 46-241 (530)
88 PRK11264 putative amino-acid A 100.0 7.6E-32 1.7E-36 214.9 16.4 154 2-159 48-231 (250)
89 PRK15112 antimicrobial peptide 100.0 7.9E-32 1.7E-36 217.1 16.5 157 2-159 58-237 (267)
90 cd03218 ABC_YhbG The ABC trans 100.0 8.5E-32 1.8E-36 212.4 16.4 154 2-159 45-220 (232)
91 PRK13641 cbiO cobalt transport 100.0 7E-32 1.5E-36 219.5 16.2 154 2-158 52-231 (287)
92 TIGR01277 thiQ thiamine ABC tr 100.0 9.9E-32 2.2E-36 209.7 16.4 148 2-152 43-210 (213)
93 PRK13646 cbiO cobalt transport 100.0 4.5E-32 9.7E-37 220.5 14.8 155 2-158 52-232 (286)
94 cd03225 ABC_cobalt_CbiO_domain 100.0 4.3E-32 9.4E-37 211.2 14.1 145 2-148 46-211 (211)
95 PRK11819 putative ABC transpor 100.0 1.9E-31 4.2E-36 234.3 19.8 156 2-161 52-250 (556)
96 PRK09544 znuC high-affinity zi 100.0 9.4E-32 2E-36 214.9 16.2 153 2-159 49-207 (251)
97 TIGR03410 urea_trans_UrtE urea 100.0 4.7E-32 1E-36 213.7 14.3 156 2-161 45-221 (230)
98 PRK09493 glnQ glutamine ABC tr 100.0 9.8E-32 2.1E-36 213.2 16.1 154 2-159 46-223 (240)
99 PRK09473 oppD oligopeptide tra 100.0 1.1E-31 2.3E-36 222.2 16.9 151 2-152 61-243 (330)
100 PRK11022 dppD dipeptide transp 100.0 1.1E-31 2.3E-36 221.9 16.9 151 2-152 52-235 (326)
101 cd03224 ABC_TM1139_LivF_branch 100.0 7.5E-32 1.6E-36 211.3 15.1 152 2-157 45-217 (222)
102 PRK11629 lolD lipoprotein tran 100.0 7.9E-32 1.7E-36 212.9 15.3 146 2-151 54-225 (233)
103 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.3E-31 2.7E-36 212.9 16.5 154 2-159 46-223 (242)
104 TIGR03740 galliderm_ABC gallid 100.0 1.9E-31 4.1E-36 209.4 17.2 151 2-156 45-208 (223)
105 PRK14250 phosphate ABC transpo 100.0 1.3E-31 2.9E-36 212.7 16.4 148 2-152 48-213 (241)
106 PRK13631 cbiO cobalt transport 100.0 9.7E-32 2.1E-36 221.6 16.1 155 2-159 71-263 (320)
107 COG1123 ATPase components of v 100.0 8.3E-32 1.8E-36 230.9 16.1 154 2-156 54-239 (539)
108 PRK11819 putative ABC transpor 100.0 2.9E-31 6.3E-36 233.2 20.0 161 2-163 369-535 (556)
109 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.4E-31 3E-36 211.9 16.3 154 2-160 46-220 (236)
110 TIGR02769 nickel_nikE nickel i 100.0 1.1E-31 2.4E-36 216.0 15.9 157 2-159 56-238 (265)
111 cd03263 ABC_subfamily_A The AB 100.0 8.5E-32 1.8E-36 210.8 14.8 151 2-156 47-216 (220)
112 cd03260 ABC_PstB_phosphate_tra 100.0 1E-31 2.2E-36 211.4 15.2 147 2-151 45-220 (227)
113 PRK10908 cell division protein 100.0 1.6E-31 3.4E-36 209.7 16.1 146 2-150 47-216 (222)
114 TIGR02211 LolD_lipo_ex lipopro 100.0 1.6E-31 3.4E-36 209.4 16.1 145 2-150 50-220 (221)
115 PRK10895 lipopolysaccharide AB 100.0 1.5E-31 3.2E-36 212.3 16.0 154 2-159 48-224 (241)
116 PRK09984 phosphonate/organopho 100.0 1.6E-31 3.5E-36 214.6 16.4 157 2-162 49-243 (262)
117 PRK10584 putative ABC transpor 100.0 1.7E-31 3.6E-36 210.3 16.2 146 2-151 55-226 (228)
118 PRK11300 livG leucine/isoleuci 100.0 1.8E-31 3.9E-36 213.4 16.6 154 2-159 50-241 (255)
119 PRK10261 glutathione transport 100.0 9.4E-32 2E-36 238.9 16.5 154 2-156 369-548 (623)
120 PRK11124 artP arginine transpo 100.0 1.3E-31 2.8E-36 212.8 15.5 154 2-159 47-228 (242)
121 cd03292 ABC_FtsE_transporter F 100.0 6.4E-32 1.4E-36 210.6 13.5 145 2-149 46-214 (214)
122 TIGR01184 ntrCD nitrate transp 100.0 2.1E-31 4.6E-36 210.2 16.1 147 2-151 30-195 (230)
123 cd03257 ABC_NikE_OppD_transpor 100.0 2.8E-31 6E-36 208.7 16.7 149 2-151 50-226 (228)
124 PRK11248 tauB taurine transpor 100.0 1.9E-31 4.1E-36 213.6 16.0 147 2-151 46-211 (255)
125 COG0488 Uup ATPase components 100.0 1.8E-31 3.8E-36 231.4 17.0 160 2-163 367-527 (530)
126 PRK11701 phnK phosphonate C-P 100.0 2.9E-31 6.3E-36 212.7 17.0 156 2-158 51-238 (258)
127 TIGR03771 anch_rpt_ABC anchore 100.0 2E-31 4.3E-36 209.5 15.6 156 2-160 25-200 (223)
128 COG4152 ABC-type uncharacteriz 100.0 5.6E-32 1.2E-36 210.4 12.1 156 2-161 47-219 (300)
129 PRK13649 cbiO cobalt transport 100.0 2.1E-31 4.7E-36 215.8 16.1 156 2-159 52-232 (280)
130 PRK10636 putative ABC transpor 100.0 5E-31 1.1E-35 234.7 19.7 157 2-161 46-236 (638)
131 PRK10575 iron-hydroxamate tran 100.0 1.9E-31 4E-36 214.7 15.2 154 2-159 56-235 (265)
132 cd03262 ABC_HisP_GlnQ_permease 100.0 1.3E-31 2.8E-36 208.7 13.8 145 2-149 45-213 (213)
133 TIGR02770 nickel_nikD nickel i 100.0 4.2E-31 9E-36 208.5 16.9 156 2-159 31-213 (230)
134 PRK13650 cbiO cobalt transport 100.0 2.1E-31 4.5E-36 215.9 15.3 153 2-158 52-226 (279)
135 PRK13548 hmuV hemin importer A 100.0 5E-31 1.1E-35 211.5 17.1 154 2-159 47-228 (258)
136 TIGR03005 ectoine_ehuA ectoine 100.0 3.2E-31 6.9E-36 211.7 15.6 154 2-159 45-234 (252)
137 PRK11231 fecE iron-dicitrate t 100.0 4E-31 8.7E-36 211.5 16.0 154 2-159 47-225 (255)
138 PRK10253 iron-enterobactin tra 100.0 4.5E-31 9.7E-36 212.5 16.3 154 2-159 52-231 (265)
139 TIGR03873 F420-0_ABC_ATP propo 100.0 3.5E-31 7.5E-36 212.0 15.6 154 2-159 46-224 (256)
140 PRK13636 cbiO cobalt transport 100.0 4.2E-31 9E-36 214.6 16.3 155 2-159 51-229 (283)
141 PRK13638 cbiO cobalt transport 100.0 4.2E-31 9.1E-36 213.2 16.2 155 2-159 46-223 (271)
142 PRK13652 cbiO cobalt transport 100.0 3.4E-31 7.3E-36 214.5 15.1 155 2-159 49-225 (277)
143 COG1137 YhbG ABC-type (unclass 100.0 1.3E-31 2.8E-36 203.0 11.8 158 2-161 49-228 (243)
144 TIGR00972 3a0107s01c2 phosphat 100.0 8.5E-31 1.8E-35 208.7 17.2 153 2-159 46-230 (247)
145 COG4598 HisP ABC-type histidin 100.0 5.3E-32 1.2E-36 202.4 9.5 153 4-158 53-238 (256)
146 PRK13645 cbiO cobalt transport 100.0 5.7E-31 1.2E-35 214.3 16.4 155 2-159 56-238 (289)
147 PRK15439 autoinducer 2 ABC tra 100.0 5.3E-31 1.1E-35 229.4 17.3 154 2-159 56-227 (510)
148 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.9E-31 1.9E-35 229.9 18.6 156 2-161 50-248 (552)
149 TIGR02323 CP_lyasePhnK phospho 100.0 7.4E-31 1.6E-35 209.7 16.4 156 2-159 48-236 (253)
150 COG4161 ArtP ABC-type arginine 100.0 7.5E-32 1.6E-36 198.7 9.1 153 5-159 50-228 (242)
151 PRK10762 D-ribose transporter 100.0 8.8E-31 1.9E-35 227.6 17.4 147 2-151 49-221 (501)
152 TIGR01978 sufC FeS assembly AT 100.0 1.1E-30 2.5E-35 207.1 16.5 154 2-158 45-231 (243)
153 cd03299 ABC_ModC_like Archeal 100.0 1.2E-30 2.5E-35 206.6 16.5 154 2-159 44-217 (235)
154 TIGR03269 met_CoM_red_A2 methy 100.0 8.5E-31 1.8E-35 228.6 17.2 155 2-159 329-515 (520)
155 PRK13639 cbiO cobalt transport 100.0 7.9E-31 1.7E-35 212.1 15.6 155 2-159 47-224 (275)
156 PRK10418 nikD nickel transport 100.0 2.3E-30 5E-35 207.1 18.0 157 2-159 48-228 (254)
157 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.3E-30 5E-35 206.4 17.6 144 2-149 44-194 (246)
158 PRK09700 D-allose transporter 100.0 5.6E-31 1.2E-35 229.2 15.2 150 2-152 308-490 (510)
159 cd03267 ABC_NatA_like Similar 100.0 1.3E-30 2.9E-35 206.5 15.9 148 2-151 66-234 (236)
160 PRK13644 cbiO cobalt transport 100.0 1E-30 2.2E-35 211.4 15.5 153 2-158 47-221 (274)
161 PRK13635 cbiO cobalt transport 100.0 1.1E-30 2.5E-35 211.6 15.7 153 2-158 52-226 (279)
162 COG1117 PstB ABC-type phosphat 100.0 1.4E-31 3.1E-36 204.6 9.7 134 19-155 87-232 (253)
163 COG4172 ABC-type uncharacteriz 100.0 1E-30 2.2E-35 215.6 15.3 149 3-152 333-508 (534)
164 PRK14247 phosphate ABC transpo 100.0 3.2E-30 7E-35 205.6 17.6 155 2-159 48-232 (250)
165 PRK10261 glutathione transport 100.0 9.7E-31 2.1E-35 232.4 16.1 157 2-159 61-256 (623)
166 cd03300 ABC_PotA_N PotA is an 100.0 2.2E-30 4.7E-35 204.6 16.4 153 2-158 45-217 (232)
167 PRK11614 livF leucine/isoleuci 100.0 9.1E-31 2E-35 207.3 14.2 154 2-159 50-224 (237)
168 PRK15134 microcin C ABC transp 100.0 1.6E-30 3.4E-35 227.3 16.6 156 2-159 331-513 (529)
169 PRK13633 cobalt transporter AT 100.0 2.3E-30 5E-35 209.9 16.0 154 2-159 55-231 (280)
170 PRK09700 D-allose transporter 100.0 1.9E-30 4E-35 226.0 16.4 153 2-158 50-231 (510)
171 PRK10419 nikE nickel transport 100.0 2.5E-30 5.5E-35 208.5 16.0 154 2-156 57-236 (268)
172 PRK11288 araG L-arabinose tran 100.0 1.3E-30 2.8E-35 226.5 15.3 157 2-160 298-484 (501)
173 PRK11147 ABC transporter ATPas 100.0 6.7E-30 1.5E-34 227.5 19.9 156 2-162 48-244 (635)
174 PRK13549 xylose transporter AT 100.0 3.3E-30 7.2E-35 224.2 17.4 147 2-151 50-223 (506)
175 PRK10982 galactose/methyl gala 100.0 4.1E-30 8.9E-35 222.9 17.8 151 2-156 43-218 (491)
176 PRK10762 D-ribose transporter 100.0 2.3E-30 5.1E-35 224.9 16.1 149 2-151 297-475 (501)
177 PRK13549 xylose transporter AT 100.0 1.5E-30 3.3E-35 226.3 14.8 156 2-159 307-492 (506)
178 PRK13642 cbiO cobalt transport 100.0 3.5E-30 7.5E-35 208.6 15.8 154 2-159 52-227 (277)
179 PRK14268 phosphate ABC transpo 100.0 5.4E-30 1.2E-34 205.4 16.8 153 2-159 57-240 (258)
180 TIGR02633 xylG D-xylose ABC tr 100.0 5.4E-30 1.2E-34 222.5 17.8 149 2-152 46-222 (500)
181 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-30 3.6E-35 226.3 14.6 149 2-151 308-483 (510)
182 PRK13648 cbiO cobalt transport 100.0 2.5E-30 5.5E-35 208.5 14.5 154 2-159 54-229 (269)
183 PRK14273 phosphate ABC transpo 100.0 5E-30 1.1E-34 205.0 16.0 153 2-159 52-236 (254)
184 cd03245 ABCC_bacteriocin_expor 100.0 3.1E-30 6.7E-35 202.0 14.5 146 2-151 49-218 (220)
185 TIGR00968 3a0106s01 sulfate AB 100.0 6.3E-30 1.4E-34 202.7 16.3 154 2-159 45-218 (237)
186 COG0411 LivG ABC-type branched 100.0 3.1E-30 6.7E-35 200.8 14.1 157 1-161 48-239 (250)
187 PRK10744 pstB phosphate transp 100.0 8.3E-30 1.8E-34 204.5 17.2 154 2-159 58-242 (260)
188 PRK11288 araG L-arabinose tran 100.0 3.9E-30 8.5E-35 223.5 16.5 147 2-151 49-220 (501)
189 PRK14242 phosphate transporter 100.0 6.8E-30 1.5E-34 204.1 16.4 154 2-159 51-235 (253)
190 TIGR03269 met_CoM_red_A2 methy 100.0 5.8E-30 1.3E-34 223.3 17.4 138 21-161 110-258 (520)
191 PRK13632 cbiO cobalt transport 100.0 3.8E-30 8.1E-35 207.7 15.0 153 2-158 54-228 (271)
192 PRK13640 cbiO cobalt transport 100.0 8E-30 1.7E-34 206.9 16.1 153 2-158 52-229 (282)
193 PRK15056 manganese/iron transp 100.0 5.4E-30 1.2E-34 206.9 14.9 154 2-158 52-227 (272)
194 cd03252 ABCC_Hemolysin The ABC 100.0 9.4E-30 2E-34 201.4 16.0 153 2-160 47-224 (237)
195 PRK13543 cytochrome c biogenes 100.0 3.7E-30 8E-35 201.1 13.5 142 2-146 56-212 (214)
196 PRK14267 phosphate ABC transpo 100.0 9.2E-30 2E-34 203.3 16.1 155 2-159 49-235 (253)
197 PRK13546 teichoic acids export 100.0 2.5E-29 5.5E-34 202.2 18.7 167 2-174 69-245 (264)
198 PRK14269 phosphate ABC transpo 100.0 1.1E-29 2.3E-34 202.3 16.0 154 2-159 47-228 (246)
199 PRK15134 microcin C ABC transp 100.0 7.7E-30 1.7E-34 223.0 16.6 155 2-157 54-242 (529)
200 TIGR02633 xylG D-xylose ABC tr 100.0 3.6E-30 7.7E-35 223.7 14.1 150 2-151 305-483 (500)
201 cd03254 ABCC_Glucan_exporter_l 100.0 1E-29 2.3E-34 200.1 15.2 152 2-159 48-224 (229)
202 KOG0066|consensus 100.0 2.3E-30 4.9E-35 215.7 11.9 174 2-175 632-805 (807)
203 PRK14235 phosphate transporter 100.0 2.1E-29 4.6E-34 202.9 17.3 154 2-159 64-249 (267)
204 PRK10938 putative molybdenum t 100.0 5.3E-30 1.2E-34 222.1 14.5 154 2-158 48-221 (490)
205 PRK14256 phosphate ABC transpo 100.0 2.4E-29 5.2E-34 200.9 17.0 154 2-158 49-233 (252)
206 PRK03695 vitamin B12-transport 100.0 2.9E-29 6.4E-34 200.1 17.2 153 2-159 41-220 (248)
207 PRK14270 phosphate ABC transpo 100.0 2.4E-29 5.2E-34 200.8 16.7 154 2-159 49-233 (251)
208 PRK14241 phosphate transporter 100.0 2.9E-29 6.3E-34 201.1 17.2 154 2-159 49-240 (258)
209 PRK14248 phosphate ABC transpo 100.0 1.9E-29 4.1E-34 203.3 16.1 154 2-159 66-250 (268)
210 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 9.9E-30 2.2E-34 228.2 16.1 154 2-160 498-672 (686)
211 PRK14244 phosphate ABC transpo 100.0 1.9E-29 4E-34 201.4 15.6 154 2-159 50-235 (251)
212 cd03251 ABCC_MsbA MsbA is an e 100.0 2.4E-29 5.3E-34 198.6 16.2 153 2-160 47-224 (234)
213 cd03244 ABCC_MRP_domain2 Domai 100.0 1.6E-29 3.6E-34 198.0 14.7 146 2-151 49-217 (221)
214 PRK14254 phosphate ABC transpo 100.0 3.4E-29 7.5E-34 203.5 16.9 152 2-158 84-266 (285)
215 PRK14251 phosphate ABC transpo 100.0 2.8E-29 6E-34 200.3 16.0 153 2-158 49-232 (251)
216 PRK14272 phosphate ABC transpo 100.0 5.3E-29 1.1E-33 198.8 17.5 154 2-159 49-234 (252)
217 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-29 3.3E-34 196.1 14.0 139 2-144 43-206 (206)
218 TIGR02982 heterocyst_DevA ABC 100.0 1.8E-29 3.8E-34 197.9 14.3 144 2-149 50-219 (220)
219 PRK14240 phosphate transporter 100.0 5.4E-29 1.2E-33 198.6 17.4 154 2-159 48-232 (250)
220 TIGR02324 CP_lyasePhnL phospho 100.0 1.4E-29 2.9E-34 198.9 13.7 141 2-144 53-222 (224)
221 PRK14245 phosphate ABC transpo 100.0 1.7E-29 3.7E-34 201.5 14.4 154 2-159 48-232 (250)
222 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.6E-29 5.6E-34 203.2 15.6 152 2-160 49-224 (275)
223 PRK14239 phosphate transporter 100.0 5E-29 1.1E-33 198.9 16.7 154 2-159 50-234 (252)
224 PRK14246 phosphate ABC transpo 100.0 3.7E-29 8E-34 200.6 16.0 155 2-159 55-239 (257)
225 PRK10247 putative ABC transpor 100.0 2E-29 4.3E-34 198.3 14.2 140 2-145 52-211 (225)
226 PRK14259 phosphate ABC transpo 100.0 4.8E-29 1E-33 201.1 16.7 141 2-146 58-228 (269)
227 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.8E-29 1E-33 193.7 16.0 138 2-151 53-203 (207)
228 PRK14262 phosphate ABC transpo 100.0 4.8E-29 1E-33 198.8 16.3 154 2-159 48-232 (250)
229 PRK14274 phosphate ABC transpo 100.0 6.1E-29 1.3E-33 199.3 16.8 154 2-159 57-241 (259)
230 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.4E-29 7.4E-34 198.3 15.0 153 2-160 48-225 (238)
231 PRK14253 phosphate ABC transpo 100.0 6.9E-29 1.5E-33 197.9 16.8 154 2-159 48-231 (249)
232 cd03234 ABCG_White The White s 100.0 5.1E-29 1.1E-33 196.0 15.7 147 2-151 52-224 (226)
233 PRK14275 phosphate ABC transpo 100.0 6E-29 1.3E-33 202.2 16.6 153 2-159 84-268 (286)
234 PRK13547 hmuV hemin importer A 100.0 6.1E-29 1.3E-33 200.9 16.3 154 2-159 46-242 (272)
235 PRK13538 cytochrome c biogenes 100.0 1.5E-29 3.1E-34 196.3 12.1 140 2-144 46-202 (204)
236 PRK10982 galactose/methyl gala 100.0 3.3E-29 7.1E-34 217.2 15.5 150 2-151 293-471 (491)
237 PRK14271 phosphate ABC transpo 100.0 1.2E-28 2.5E-33 199.6 17.6 154 2-159 66-249 (276)
238 PRK13409 putative ATPase RIL; 100.0 3.2E-29 6.8E-34 221.1 15.5 143 2-150 384-532 (590)
239 PRK14238 phosphate transporter 100.0 4.4E-29 9.5E-34 201.5 15.0 153 2-159 69-253 (271)
240 cd03231 ABC_CcmA_heme_exporter 100.0 4E-29 8.7E-34 193.5 14.2 140 2-144 45-198 (201)
241 cd03214 ABC_Iron-Siderophores_ 100.0 9.9E-30 2.1E-34 193.7 10.5 131 2-151 44-178 (180)
242 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.2E-29 7E-34 225.7 15.6 154 2-160 524-699 (710)
243 PRK10790 putative multidrug tr 100.0 2.8E-29 6.2E-34 221.9 15.0 154 2-160 386-562 (592)
244 CHL00131 ycf16 sulfate ABC tra 100.0 1.2E-28 2.7E-33 196.6 17.3 152 2-157 52-237 (252)
245 PRK14237 phosphate transporter 100.0 1.2E-28 2.6E-33 198.6 17.2 153 2-159 65-249 (267)
246 TIGR01257 rim_protein retinal- 100.0 4.3E-29 9.4E-34 240.2 17.0 156 2-161 975-1149(2272)
247 PRK09580 sufC cysteine desulfu 100.0 1.7E-28 3.8E-33 195.3 17.7 153 2-157 46-231 (248)
248 PRK14249 phosphate ABC transpo 100.0 1.2E-28 2.7E-33 196.7 16.9 154 2-159 49-233 (251)
249 TIGR01257 rim_protein retinal- 100.0 3.9E-29 8.5E-34 240.5 16.3 155 2-160 1984-2158(2272)
250 cd03253 ABCC_ATM1_transporter 100.0 9.4E-29 2E-33 195.5 15.5 152 2-159 46-222 (236)
251 COG4988 CydD ABC-type transpor 100.0 4.5E-29 9.8E-34 213.8 14.7 153 2-159 366-541 (559)
252 COG2274 SunT ABC-type bacterio 100.0 3.2E-29 7E-34 223.5 14.3 156 2-162 518-697 (709)
253 cd03223 ABCD_peroxisomal_ALDP 100.0 6.4E-29 1.4E-33 187.1 13.8 119 2-148 46-164 (166)
254 cd03215 ABC_Carb_Monos_II This 100.0 5.4E-29 1.2E-33 190.0 13.3 122 2-149 45-182 (182)
255 PRK14236 phosphate transporter 100.0 1.8E-28 4E-33 198.0 17.2 154 2-159 70-254 (272)
256 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1E-28 2.2E-33 194.3 15.3 146 2-151 67-222 (224)
257 PRK14243 phosphate transporter 100.0 1.4E-28 3.1E-33 197.8 16.4 154 2-159 55-246 (264)
258 PRK11174 cysteine/glutathione 100.0 8.1E-29 1.7E-33 218.9 16.3 152 2-160 395-571 (588)
259 COG4525 TauB ABC-type taurine 100.0 2.8E-29 6E-34 189.9 11.1 148 1-151 49-215 (259)
260 PRK14263 phosphate ABC transpo 100.0 2E-28 4.3E-33 196.8 16.8 154 2-159 53-243 (261)
261 PRK14255 phosphate ABC transpo 100.0 2.2E-28 4.7E-33 195.3 16.3 148 2-152 50-228 (252)
262 PRK14258 phosphate ABC transpo 100.0 2.3E-28 5E-33 196.3 16.5 154 2-159 52-243 (261)
263 cd03248 ABCC_TAP TAP, the Tran 100.0 5.9E-29 1.3E-33 195.5 12.8 143 2-149 59-226 (226)
264 PRK14265 phosphate ABC transpo 100.0 2.9E-28 6.3E-33 197.1 16.9 153 2-159 65-256 (274)
265 PRK14257 phosphate ABC transpo 100.0 2.2E-28 4.9E-33 202.3 16.6 153 2-159 127-311 (329)
266 cd03250 ABCC_MRP_domain1 Domai 100.0 1.5E-28 3.3E-33 190.5 14.5 140 2-148 50-204 (204)
267 cd03288 ABCC_SUR2 The SUR doma 100.0 1.7E-28 3.7E-33 196.6 14.9 153 2-160 66-242 (257)
268 PRK11176 lipid transporter ATP 100.0 8.4E-29 1.8E-33 218.5 14.4 155 2-161 388-567 (582)
269 cd03290 ABCC_SUR1_N The SUR do 100.0 2.4E-28 5.2E-33 191.2 15.0 143 2-148 46-218 (218)
270 COG4608 AppF ABC-type oligopep 100.0 5.8E-29 1.3E-33 196.9 11.5 145 2-167 58-213 (268)
271 cd03230 ABC_DR_subfamily_A Thi 100.0 1.8E-28 3.9E-33 185.7 13.6 116 2-149 45-173 (173)
272 PRK14260 phosphate ABC transpo 100.0 4.6E-28 9.9E-33 194.3 16.4 154 2-159 52-241 (259)
273 PRK14252 phosphate ABC transpo 100.0 5.5E-28 1.2E-32 194.5 16.9 153 2-158 61-246 (265)
274 PRK13545 tagH teichoic acids e 100.0 5.2E-28 1.1E-32 208.2 17.6 152 2-159 69-230 (549)
275 PRK14264 phosphate ABC transpo 100.0 5.8E-28 1.3E-32 198.1 17.0 153 2-159 90-287 (305)
276 cd03246 ABCC_Protease_Secretio 100.0 1.3E-28 2.9E-33 186.4 12.2 113 2-149 47-173 (173)
277 COG4172 ABC-type uncharacteriz 100.0 3.5E-28 7.5E-33 200.6 15.6 147 20-166 93-260 (534)
278 PRK11160 cysteine/glutathione 100.0 3.1E-28 6.6E-33 214.8 15.8 153 2-159 385-560 (574)
279 TIGR03375 type_I_sec_LssB type 100.0 2.9E-28 6.3E-33 219.0 15.8 154 2-160 510-687 (694)
280 PRK10938 putative molybdenum t 100.0 9.3E-29 2E-33 214.4 12.0 150 2-152 305-484 (490)
281 cd03247 ABCC_cytochrome_bd The 100.0 3.5E-28 7.5E-33 184.8 13.5 118 2-151 47-176 (178)
282 TIGR01193 bacteriocin_ABC ABC- 100.0 2.7E-28 5.8E-33 219.7 15.0 154 2-160 519-696 (708)
283 PRK14261 phosphate ABC transpo 100.0 8.8E-28 1.9E-32 192.0 16.3 153 2-159 51-235 (253)
284 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.3E-27 2.8E-32 194.0 17.4 151 2-159 82-245 (282)
285 TIGR02203 MsbA_lipidA lipid A 100.0 2.7E-28 5.9E-33 214.7 14.4 153 2-159 377-554 (571)
286 PRK13539 cytochrome c biogenes 100.0 4.8E-28 1E-32 188.3 13.7 139 2-145 47-199 (207)
287 PRK14266 phosphate ABC transpo 100.0 4.8E-28 1E-32 193.1 13.9 154 2-159 48-232 (250)
288 TIGR01166 cbiO cobalt transpor 100.0 2.6E-28 5.6E-33 187.2 11.4 130 2-133 37-189 (190)
289 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6E-28 1.3E-32 177.9 12.8 100 2-148 45-144 (144)
290 TIGR00958 3a01208 Conjugate Tr 100.0 6.2E-28 1.3E-32 217.4 15.3 154 2-160 526-701 (711)
291 PRK13657 cyclic beta-1,2-gluca 100.0 7.7E-28 1.7E-32 212.7 15.6 153 2-159 380-556 (588)
292 cd03229 ABC_Class3 This class 100.0 6E-28 1.3E-32 183.6 12.9 117 2-148 45-178 (178)
293 COG1129 MglA ABC-type sugar tr 100.0 9.8E-28 2.1E-32 204.6 15.2 148 1-151 52-225 (500)
294 TIGR01192 chvA glucan exporter 100.0 1.2E-27 2.7E-32 211.3 16.3 153 2-160 380-557 (585)
295 COG0410 LivF ABC-type branched 100.0 6.9E-28 1.5E-32 186.3 12.8 156 2-161 48-226 (237)
296 TIGR01842 type_I_sec_PrtD type 100.0 8.9E-28 1.9E-32 210.6 15.2 152 2-159 363-540 (544)
297 cd03213 ABCG_EPDR ABCG transpo 100.0 1.7E-27 3.7E-32 183.5 14.5 125 2-151 54-192 (194)
298 PRK10789 putative multidrug tr 100.0 1E-27 2.3E-32 211.2 15.0 154 2-160 360-537 (569)
299 TIGR01189 ccmA heme ABC export 100.0 6.6E-28 1.4E-32 186.2 12.0 136 2-142 45-196 (198)
300 KOG0062|consensus 100.0 7.9E-28 1.7E-32 203.0 13.4 166 2-167 409-575 (582)
301 cd03217 ABC_FeS_Assembly ABC-t 100.0 2E-27 4.4E-32 183.9 14.7 123 2-151 45-185 (200)
302 cd03216 ABC_Carb_Monos_I This 100.0 1.3E-27 2.8E-32 179.5 13.1 76 75-150 83-161 (163)
303 TIGR01846 type_I_sec_HlyB type 100.0 1.1E-27 2.3E-32 215.4 14.6 153 2-160 502-679 (694)
304 COG3845 ABC-type uncharacteriz 99.9 2.7E-27 5.9E-32 199.2 14.5 147 2-151 49-220 (501)
305 PRK15177 Vi polysaccharide exp 99.9 4.5E-27 9.8E-32 183.7 14.7 153 2-160 32-191 (213)
306 PRK13540 cytochrome c biogenes 99.9 2.2E-27 4.8E-32 183.5 12.6 135 2-140 46-195 (200)
307 cd03228 ABCC_MRP_Like The MRP 99.9 2.3E-27 4.9E-32 179.3 12.4 112 2-148 47-171 (171)
308 TIGR02204 MsbA_rel ABC transpo 99.9 3E-27 6.6E-32 208.3 14.7 153 2-159 385-561 (576)
309 cd03232 ABC_PDR_domain2 The pl 99.9 4.3E-27 9.3E-32 181.0 13.5 125 2-151 52-190 (192)
310 COG1132 MdlB ABC-type multidru 99.9 5.3E-27 1.2E-31 206.6 15.8 154 2-161 374-552 (567)
311 TIGR00954 3a01203 Peroxysomal 99.9 4.6E-27 1E-31 210.0 15.5 140 2-146 497-653 (659)
312 cd03233 ABC_PDR_domain1 The pl 99.9 1.1E-26 2.4E-31 180.0 15.6 131 2-151 52-200 (202)
313 KOG0055|consensus 99.9 2.1E-27 4.6E-32 217.2 13.1 153 2-160 398-575 (1228)
314 PLN03211 ABC transporter G-25; 99.9 8.6E-27 1.9E-31 207.9 16.8 155 2-159 113-294 (659)
315 cd03236 ABC_RNaseL_inhibitor_d 99.9 6.9E-27 1.5E-31 187.2 12.4 142 2-146 45-214 (255)
316 PLN03232 ABC transporter C fam 99.9 7.5E-27 1.6E-31 223.4 14.0 154 2-160 1281-1457(1495)
317 PRK10522 multidrug transporter 99.9 1.4E-26 3.1E-31 203.1 14.6 147 2-155 368-533 (547)
318 PRK13541 cytochrome c biogenes 99.9 1E-26 2.2E-31 179.2 11.7 135 2-140 45-191 (195)
319 KOG0927|consensus 99.9 3.6E-27 7.8E-32 200.0 9.9 165 2-166 435-601 (614)
320 PLN03130 ABC transporter C fam 99.9 1.1E-26 2.3E-31 223.1 14.4 154 2-160 1284-1460(1622)
321 PRK10535 macrolide transporter 99.9 2.9E-26 6.2E-31 204.6 15.9 147 2-152 53-224 (648)
322 cd03222 ABC_RNaseL_inhibitor T 99.9 3.7E-26 8E-31 173.6 14.0 103 2-149 44-150 (177)
323 COG4619 ABC-type uncharacteriz 99.9 2.8E-27 6.2E-32 175.1 7.4 149 2-150 48-213 (223)
324 COG4987 CydC ABC-type transpor 99.9 8E-27 1.7E-31 198.0 11.0 154 2-160 383-560 (573)
325 PRK13409 putative ATPase RIL; 99.9 2.1E-26 4.6E-31 203.2 13.6 142 2-147 118-287 (590)
326 COG4107 PhnK ABC-type phosphon 99.9 8.2E-26 1.8E-30 168.6 14.4 151 2-152 51-233 (258)
327 TIGR02857 CydD thiol reductant 99.9 3.2E-26 6.9E-31 200.1 13.8 139 2-144 367-529 (529)
328 COG4559 ABC-type hemin transpo 99.9 4.4E-26 9.6E-31 174.3 12.5 163 2-168 46-238 (259)
329 COG4586 ABC-type uncharacteriz 99.9 1.7E-26 3.7E-31 182.3 10.6 158 2-162 69-247 (325)
330 COG4604 CeuD ABC-type enteroch 99.9 2.7E-27 5.9E-32 179.3 5.8 162 3-168 47-233 (252)
331 TIGR01194 cyc_pep_trnsptr cycl 99.9 3E-26 6.5E-31 201.5 12.8 144 2-151 387-550 (555)
332 PTZ00265 multidrug resistance 99.9 4.3E-26 9.3E-31 217.2 14.5 147 10-160 1275-1451(1466)
333 PLN03073 ABC transporter F fam 99.9 8.3E-26 1.8E-30 202.9 15.6 110 52-161 322-431 (718)
334 TIGR00957 MRP_assoc_pro multi 99.9 6.8E-26 1.5E-30 217.1 15.3 155 2-161 1331-1508(1522)
335 KOG0057|consensus 99.9 8.4E-26 1.8E-30 192.1 14.1 152 4-161 399-574 (591)
336 PTZ00243 ABC transporter; Prov 99.9 1E-25 2.2E-30 215.9 16.1 154 2-160 1355-1532(1560)
337 COG4167 SapF ABC-type antimicr 99.9 1.1E-25 2.3E-30 169.1 12.8 153 2-154 58-233 (267)
338 TIGR00955 3a01204 The Eye Pigm 99.9 1.6E-25 3.4E-30 199.0 15.6 154 2-159 70-254 (617)
339 KOG0058|consensus 99.9 8.2E-26 1.8E-30 197.5 12.4 153 3-161 514-691 (716)
340 PTZ00265 multidrug resistance 99.9 1.7E-25 3.7E-30 213.1 13.5 142 2-147 430-655 (1466)
341 cd03238 ABC_UvrA The excision 99.9 8.6E-25 1.9E-29 166.0 14.1 94 55-149 68-166 (176)
342 TIGR02868 CydC thiol reductant 99.9 1.8E-25 3.9E-30 195.4 11.7 127 2-131 380-529 (529)
343 KOG0062|consensus 99.9 6E-26 1.3E-30 191.7 7.5 111 57-167 181-291 (582)
344 TIGR01271 CFTR_protein cystic 99.9 6.2E-25 1.3E-29 210.1 15.3 153 2-160 1264-1439(1490)
345 TIGR00957 MRP_assoc_pro multi 99.9 9.1E-25 2E-29 209.4 16.1 150 2-159 683-848 (1522)
346 COG1119 ModF ABC-type molybden 99.9 1.2E-25 2.5E-30 175.4 7.6 149 2-151 76-253 (257)
347 TIGR01271 CFTR_protein cystic 99.9 1.2E-24 2.6E-29 208.1 16.2 150 2-159 471-634 (1490)
348 TIGR00956 3a01205 Pleiotropic 99.9 1E-24 2.2E-29 207.4 15.6 150 2-155 808-987 (1394)
349 KOG0055|consensus 99.9 7.7E-25 1.7E-29 200.5 13.1 151 5-161 1038-1213(1228)
350 KOG0059|consensus 99.9 4.3E-25 9.4E-30 202.5 11.4 149 2-152 610-779 (885)
351 cd03270 ABC_UvrA_I The excisio 99.9 8.3E-24 1.8E-28 166.7 16.4 96 55-151 118-224 (226)
352 cd00267 ABC_ATPase ABC (ATP-bi 99.9 2.2E-24 4.7E-29 160.7 12.0 74 75-148 81-157 (157)
353 PLN03232 ABC transporter C fam 99.9 2.6E-24 5.6E-29 206.0 15.0 153 2-160 662-827 (1495)
354 TIGR00956 3a01205 Pleiotropic 99.9 4.6E-24 1E-28 202.9 16.2 154 2-158 106-297 (1394)
355 PLN03130 ABC transporter C fam 99.9 3.4E-24 7.3E-29 205.9 15.4 152 2-160 662-827 (1622)
356 COG1101 PhnK ABC-type uncharac 99.9 1.3E-24 2.7E-29 166.7 10.0 150 1-151 50-229 (263)
357 PLN03140 ABC transporter G fam 99.9 5E-24 1.1E-28 202.8 15.7 151 2-156 925-1105(1470)
358 COG4674 Uncharacterized ABC-ty 99.9 2.3E-24 4.9E-29 163.2 10.7 157 2-160 50-234 (249)
359 PTZ00243 ABC transporter; Prov 99.9 9.7E-24 2.1E-28 202.4 17.0 151 2-160 705-869 (1560)
360 PLN03140 ABC transporter G fam 99.9 1.3E-23 2.9E-28 199.9 14.7 155 2-158 210-424 (1470)
361 COG1134 TagH ABC-type polysacc 99.9 1.4E-23 3E-28 163.8 12.2 161 2-167 72-242 (249)
362 KOG0927|consensus 99.9 1.2E-23 2.5E-28 178.8 11.3 110 54-163 201-311 (614)
363 COG1129 MglA ABC-type sugar tr 99.9 2.4E-23 5.2E-28 177.8 12.9 150 2-151 304-481 (500)
364 cd03271 ABC_UvrA_II The excisi 99.9 1.6E-22 3.5E-27 162.1 14.8 99 52-151 147-257 (261)
365 COG4778 PhnL ABC-type phosphon 99.9 5.7E-24 1.2E-28 158.0 5.6 143 3-146 57-227 (235)
366 COG4618 ArpD ABC-type protease 99.9 6.8E-23 1.5E-27 173.2 12.1 155 2-162 381-561 (580)
367 COG4133 CcmA ABC-type transpor 99.9 5.8E-23 1.3E-27 154.5 7.7 132 2-135 47-194 (209)
368 KOG0054|consensus 99.9 1.1E-21 2.5E-26 182.9 14.1 153 2-161 566-731 (1381)
369 cd03278 ABC_SMC_barmotin Barmo 99.9 1.6E-21 3.5E-26 150.7 12.6 110 19-146 75-190 (197)
370 COG4136 ABC-type uncharacteriz 99.9 3E-22 6.6E-27 146.2 6.0 132 11-144 59-207 (213)
371 cd03279 ABC_sbcCD SbcCD and ot 99.9 3.1E-21 6.8E-26 150.6 11.4 90 59-149 109-211 (213)
372 KOG0061|consensus 99.9 3.2E-21 6.9E-26 170.9 12.7 151 2-156 75-255 (613)
373 COG0396 sufC Cysteine desulfur 99.8 9.1E-20 2E-24 141.2 15.4 157 2-162 49-234 (251)
374 COG1245 Predicted ATPase, RNas 99.8 1.5E-20 3.4E-25 157.4 10.6 140 1-146 385-531 (591)
375 TIGR00630 uvra excinuclease AB 99.8 2.6E-20 5.7E-25 170.4 12.6 101 57-159 470-581 (924)
376 PRK00349 uvrA excinuclease ABC 99.8 2.7E-20 5.8E-25 170.6 12.2 101 57-159 472-583 (943)
377 cd03240 ABC_Rad50 The catalyti 99.8 4.8E-20 1E-24 143.1 11.3 131 3-147 46-198 (204)
378 KOG0066|consensus 99.8 1.8E-21 3.8E-26 162.8 3.3 110 52-161 390-499 (807)
379 PRK00349 uvrA excinuclease ABC 99.8 2.4E-19 5.2E-24 164.4 15.5 106 53-160 809-926 (943)
380 KOG0054|consensus 99.8 5.2E-20 1.1E-24 171.9 10.0 147 3-155 1186-1357(1381)
381 COG5265 ATM1 ABC-type transpor 99.8 4.1E-20 8.8E-25 153.6 8.1 151 3-159 309-484 (497)
382 TIGR00630 uvra excinuclease AB 99.8 5.7E-19 1.2E-23 161.7 14.8 103 53-157 807-921 (924)
383 cd03273 ABC_SMC2_euk Eukaryoti 99.8 3.8E-19 8.3E-24 142.0 11.9 94 51-145 124-242 (251)
384 PRK00635 excinuclease ABC subu 99.8 7.4E-19 1.6E-23 167.9 13.9 102 56-159 791-904 (1809)
385 cd03276 ABC_SMC6_euk Eukaryoti 99.8 3.1E-19 6.7E-24 138.0 9.3 92 52-148 91-192 (198)
386 COG3845 ABC-type uncharacteriz 99.8 1E-18 2.2E-23 147.7 12.4 150 2-151 303-483 (501)
387 PRK00635 excinuclease ABC subu 99.8 7.5E-19 1.6E-23 167.8 12.9 101 57-159 459-570 (1809)
388 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.5E-18 3.2E-23 137.7 12.6 75 70-145 154-234 (243)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1E-18 2.2E-23 139.4 11.0 96 50-146 110-233 (247)
390 cd03274 ABC_SMC4_euk Eukaryoti 99.8 5.3E-19 1.2E-23 138.1 9.0 90 55-146 109-204 (212)
391 COG4170 SapD ABC-type antimicr 99.8 2.1E-19 4.5E-24 138.1 6.2 132 20-151 89-239 (330)
392 COG4138 BtuD ABC-type cobalami 99.8 3.2E-20 6.9E-25 138.7 1.4 159 3-167 45-228 (248)
393 KOG0056|consensus 99.8 1.6E-19 3.5E-24 152.6 5.4 150 5-159 586-759 (790)
394 PF00005 ABC_tran: ABC transpo 99.7 1.4E-18 3.1E-23 126.1 4.9 93 2-103 30-137 (137)
395 COG4178 ABC-type uncharacteriz 99.7 7.2E-17 1.6E-21 140.8 11.7 139 2-144 438-586 (604)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.7 3.2E-17 7E-22 128.1 8.3 80 69-148 121-211 (213)
397 cd03239 ABC_SMC_head The struc 99.7 2.9E-16 6.2E-21 119.5 10.1 71 75-146 95-172 (178)
398 cd03241 ABC_RecN RecN ATPase i 99.7 2.2E-16 4.7E-21 127.9 9.1 74 73-147 169-248 (276)
399 COG1245 Predicted ATPase, RNas 99.7 2.9E-16 6.3E-21 132.0 8.8 92 54-146 194-288 (591)
400 KOG0065|consensus 99.7 1.1E-16 2.4E-21 147.8 6.1 143 19-162 863-1022(1391)
401 TIGR00618 sbcc exonuclease Sbc 99.7 5.1E-16 1.1E-20 145.4 10.3 79 69-147 945-1036(1042)
402 TIGR00634 recN DNA repair prot 99.6 1.9E-15 4E-20 133.4 9.9 74 73-147 439-518 (563)
403 PHA02562 46 endonuclease subun 99.6 2.5E-15 5.4E-20 132.3 9.4 78 71-149 465-555 (562)
404 cd03227 ABC_Class2 ABC-type Cl 99.6 6.5E-15 1.4E-19 110.3 9.2 74 72-146 75-155 (162)
405 cd03280 ABC_MutS2 MutS2 homolo 99.6 1.6E-15 3.4E-20 117.3 5.2 92 56-150 74-169 (200)
406 PRK10869 recombination and rep 99.6 1.4E-14 2.9E-19 127.5 10.3 73 74-147 430-508 (553)
407 PRK10246 exonuclease subunit S 99.5 2.4E-14 5.1E-19 134.0 10.2 77 70-146 945-1032(1047)
408 PRK03918 chromosome segregatio 99.5 2.1E-14 4.6E-19 132.4 9.7 75 70-145 784-867 (880)
409 cd03242 ABC_RecF RecF is a rec 99.5 2.1E-14 4.5E-19 116.0 8.4 78 71-149 180-269 (270)
410 TIGR00606 rad50 rad50. This fa 99.5 1.9E-14 4.1E-19 137.4 8.7 69 71-139 1196-1278(1311)
411 PRK01156 chromosome segregatio 99.5 5.1E-14 1.1E-18 130.2 10.5 74 71-145 798-883 (895)
412 COG0178 UvrA Excinuclease ATPa 99.5 1.5E-13 3.3E-18 122.2 12.1 107 53-161 801-919 (935)
413 COG4615 PvdE ABC-type sideroph 99.5 5.7E-15 1.2E-19 122.5 2.7 146 1-154 367-531 (546)
414 cd03285 ABC_MSH2_euk MutS2 hom 99.5 5.5E-14 1.2E-18 110.5 6.6 92 54-150 73-171 (222)
415 KOG0060|consensus 99.5 3.4E-13 7.3E-18 116.3 11.8 139 2-146 480-641 (659)
416 TIGR02168 SMC_prok_B chromosom 99.5 1E-13 2.2E-18 130.5 8.5 74 70-144 1085-1164(1179)
417 PRK00064 recF recombination pr 99.4 4.2E-13 9.1E-18 112.6 9.0 79 71-149 270-359 (361)
418 COG2401 ABC-type ATPase fused 99.4 1.3E-12 2.9E-17 109.2 10.9 141 7-149 441-587 (593)
419 KOG2355|consensus 99.4 8.6E-13 1.9E-17 101.4 9.0 113 36-151 112-228 (291)
420 TIGR02169 SMC_prok_A chromosom 99.4 1.2E-12 2.6E-17 123.4 8.7 74 71-145 1071-1150(1164)
421 PRK02224 chromosome segregatio 99.3 2.4E-12 5.2E-17 119.0 8.6 76 71-147 778-869 (880)
422 KOG0064|consensus 99.3 2.8E-12 6.1E-17 109.8 6.8 128 2-135 527-673 (728)
423 KOG0063|consensus 99.3 3.9E-12 8.4E-17 106.7 6.6 140 2-146 386-532 (592)
424 cd03243 ABC_MutS_homologs The 99.3 1.7E-11 3.6E-16 94.9 7.7 91 57-150 75-169 (202)
425 KOG0065|consensus 99.3 2.1E-11 4.5E-16 113.5 9.2 138 19-158 188-348 (1391)
426 TIGR00611 recf recF protein. A 99.2 2.7E-11 5.8E-16 101.8 8.2 63 73-135 274-345 (365)
427 smart00534 MUTSac ATPase domai 99.2 1.2E-11 2.6E-16 94.6 5.0 83 55-140 43-130 (185)
428 COG0178 UvrA Excinuclease ATPa 99.2 1.5E-10 3.2E-15 103.5 12.1 103 57-161 464-577 (935)
429 cd03282 ABC_MSH4_euk MutS4 hom 99.2 5E-11 1.1E-15 92.6 6.7 83 55-139 73-159 (204)
430 COG0419 SbcC ATPase involved i 99.2 1.1E-10 2.5E-15 108.3 9.9 75 70-145 811-896 (908)
431 TIGR02680 conserved hypothetic 99.2 7E-11 1.5E-15 113.2 7.5 67 70-136 1243-1321(1353)
432 PRK13695 putative NTPase; Prov 99.1 3.3E-10 7.1E-15 85.6 8.1 96 70-167 74-172 (174)
433 PF02463 SMC_N: RecF/RecN/SMC 99.1 2E-09 4.3E-14 84.1 11.5 85 51-143 120-210 (220)
434 PRK14079 recF recombination pr 99.0 6.4E-10 1.4E-14 93.0 7.9 74 73-150 262-344 (349)
435 KOG0063|consensus 99.0 3.3E-10 7.1E-15 95.3 6.0 91 55-146 195-288 (592)
436 cd03284 ABC_MutS1 MutS1 homolo 98.9 2.1E-09 4.5E-14 84.2 6.3 77 72-149 83-170 (216)
437 PRK00409 recombination and DNA 98.9 2.5E-09 5.4E-14 97.7 7.7 85 57-143 374-462 (782)
438 PF13304 AAA_21: AAA domain; P 98.9 1.1E-08 2.4E-13 79.5 8.0 64 71-134 233-302 (303)
439 cd01124 KaiC KaiC is a circadi 98.8 1.6E-08 3.4E-13 76.7 7.9 76 70-145 67-163 (187)
440 cd03283 ABC_MutS-like MutS-lik 98.8 3E-08 6.5E-13 76.7 9.3 59 79-137 90-154 (199)
441 PF13558 SbcCD_C: Putative exo 98.8 2.1E-08 4.5E-13 68.0 6.1 50 70-119 28-90 (90)
442 cd03281 ABC_MSH5_euk MutS5 hom 98.8 3E-08 6.5E-13 77.5 7.7 62 77-138 93-161 (213)
443 TIGR01069 mutS2 MutS2 family p 98.7 2.3E-08 5E-13 91.3 6.2 76 58-135 370-449 (771)
444 PTZ00132 GTP-binding nuclear p 98.5 9.6E-08 2.1E-12 74.3 4.9 50 71-120 147-203 (215)
445 TIGR03185 DNA_S_dndD DNA sulfu 98.4 1.2E-06 2.7E-11 78.9 7.5 64 71-135 548-618 (650)
446 cd01128 rho_factor Transcripti 98.2 1.1E-06 2.4E-11 70.3 4.2 75 73-150 128-212 (249)
447 TIGR02858 spore_III_AA stage I 98.2 8.5E-06 1.8E-10 65.9 8.7 65 80-148 182-259 (270)
448 cd03286 ABC_MSH6_euk MutS6 hom 98.1 9.3E-06 2E-10 63.7 7.4 61 78-138 95-160 (218)
449 PRK13830 conjugal transfer pro 98.1 6.8E-06 1.5E-10 75.9 7.5 61 90-150 650-723 (818)
450 COG4637 Predicted ATPase [Gene 98.0 5.3E-05 1.2E-09 62.0 8.7 69 72-140 268-340 (373)
451 PF13175 AAA_15: AAA ATPase do 97.9 2.5E-05 5.4E-10 66.0 7.0 64 70-133 337-414 (415)
452 cd03287 ABC_MSH3_euk MutS3 hom 97.9 3.7E-05 8.1E-10 60.5 7.3 58 79-136 97-159 (222)
453 PRK06067 flagellar accessory p 97.8 0.00011 2.3E-09 58.0 7.9 73 73-145 99-186 (234)
454 PRK08533 flagellar accessory p 97.8 4.8E-05 1E-09 60.1 5.5 71 74-145 95-184 (230)
455 KOG0962|consensus 97.8 5.1E-05 1.1E-09 71.6 6.2 64 74-137 1183-1260(1294)
456 COG3910 Predicted ATPase [Gene 97.7 0.00018 3.8E-09 55.1 7.4 79 71-150 126-207 (233)
457 COG1196 Smc Chromosome segrega 97.7 8.2E-05 1.8E-09 71.3 6.6 70 71-141 1063-1138(1163)
458 PRK13891 conjugal transfer pro 97.7 0.0001 2.2E-09 68.5 6.9 52 85-136 680-735 (852)
459 PF13166 AAA_13: AAA domain 97.7 0.00021 4.6E-09 65.0 8.6 67 71-137 497-577 (712)
460 KOG0933|consensus 97.7 3.3E-05 7.1E-10 70.8 3.1 63 70-132 1078-1146(1174)
461 KOG0964|consensus 97.5 6.2E-05 1.3E-09 68.9 3.2 71 71-142 1094-1170(1200)
462 cd01125 repA Hexameric Replica 97.5 0.00016 3.4E-09 57.3 4.7 43 88-131 107-159 (239)
463 cd01120 RecA-like_NTPases RecA 97.4 0.00055 1.2E-08 49.8 6.7 63 73-135 66-141 (165)
464 COG1195 RecF Recombinational D 97.2 0.0015 3.2E-08 54.8 7.4 76 73-149 274-361 (363)
465 KOG0996|consensus 97.0 0.00067 1.5E-08 63.4 3.6 72 70-142 1191-1268(1293)
466 PRK05399 DNA mismatch repair p 96.9 0.0031 6.7E-08 58.8 7.6 67 72-139 664-737 (854)
467 PRK13873 conjugal transfer ATP 96.9 0.002 4.3E-08 59.8 6.3 47 89-135 632-682 (811)
468 TIGR02655 circ_KaiC circadian 96.9 9.1E-05 2E-09 64.7 -2.5 75 60-145 102-190 (484)
469 KOG0018|consensus 96.8 0.0011 2.5E-08 61.4 3.8 72 70-142 1047-1122(1141)
470 COG0497 RecN ATPase involved i 96.8 0.01 2.2E-07 52.4 9.2 73 72-145 429-507 (557)
471 PRK07721 fliI flagellum-specif 96.6 0.0046 1E-07 53.4 5.9 50 100-151 273-334 (438)
472 PRK08699 DNA polymerase III su 96.6 0.0033 7.2E-08 52.3 4.8 41 96-136 116-158 (325)
473 PRK13898 type IV secretion sys 96.6 0.0059 1.3E-07 56.6 6.8 49 88-136 638-690 (800)
474 TIGR00152 dephospho-CoA kinase 96.6 0.0015 3.2E-08 49.8 2.4 69 77-147 60-133 (188)
475 PRK06793 fliI flagellum-specif 96.4 0.017 3.6E-07 49.8 7.8 74 71-150 218-301 (432)
476 cd01131 PilT Pilus retraction 96.3 0.007 1.5E-07 46.6 4.8 54 84-142 66-119 (198)
477 TIGR02788 VirB11 P-type DNA tr 96.1 0.009 2E-07 49.2 4.6 72 82-159 208-280 (308)
478 COG3044 Predicted ATPase of th 96.0 0.048 1E-06 46.7 8.6 79 72-150 318-412 (554)
479 PF09818 ABC_ATPase: Predicted 95.9 0.032 6.8E-07 48.0 6.9 78 72-149 320-416 (448)
480 PRK14088 dnaA chromosomal repl 95.6 0.032 7E-07 48.3 6.2 63 91-153 193-261 (440)
481 COG4694 Uncharacterized protei 95.3 0.051 1.1E-06 47.9 6.2 67 71-137 525-603 (758)
482 COG4913 Uncharacterized protei 95.2 0.051 1.1E-06 49.3 6.2 73 73-145 989-1076(1104)
483 PRK04863 mukB cell division pr 95.0 0.02 4.4E-07 56.2 3.3 61 72-133 1363-1441(1486)
484 PF13514 AAA_27: AAA domain 94.9 0.089 1.9E-06 50.7 7.4 66 71-136 1022-1097(1111)
485 TIGR01070 mutS1 DNA mismatch r 94.6 0.12 2.6E-06 48.4 7.2 77 57-135 638-719 (840)
486 PF00488 MutS_V: MutS domain V 93.9 0.3 6.5E-06 38.7 7.3 64 73-136 101-171 (235)
487 smart00382 AAA ATPases associa 93.9 0.55 1.2E-05 32.2 8.0 59 72-130 58-125 (148)
488 TIGR01420 pilT_fam pilus retra 93.2 0.25 5.5E-06 41.3 6.0 45 83-131 186-230 (343)
489 cd00561 CobA_CobO_BtuR ATP:cor 92.9 0.36 7.8E-06 36.0 5.9 56 91-146 94-154 (159)
490 PRK04296 thymidine kinase; Pro 92.6 1.2 2.5E-05 34.0 8.5 55 90-145 76-140 (190)
491 TIGR02903 spore_lon_C ATP-depe 92.4 0.32 7E-06 44.0 5.9 48 54-119 244-291 (615)
492 TIGR03881 KaiC_arch_4 KaiC dom 91.5 0.074 1.6E-06 41.5 0.8 54 92-145 121-188 (229)
493 PRK00454 engB GTP-binding prot 91.1 0.51 1.1E-05 35.4 5.1 61 54-119 127-191 (196)
494 COG3593 Predicted ATP-dependen 90.6 0.45 9.8E-06 42.6 4.8 56 81-136 286-347 (581)
495 TIGR03880 KaiC_arch_3 KaiC dom 90.4 0.51 1.1E-05 36.7 4.5 54 91-145 106-177 (224)
496 PRK13764 ATPase; Provisional 90.2 1.4 3.1E-05 39.8 7.6 59 88-150 320-393 (602)
497 PRK07414 cob(I)yrinic acid a,c 90.0 0.99 2.2E-05 34.3 5.6 65 83-147 104-175 (178)
498 PTZ00454 26S protease regulato 89.8 1.3 2.8E-05 38.0 6.8 53 84-136 230-299 (398)
499 PRK05986 cob(I)alamin adenolsy 87.0 1.5 3.3E-05 33.7 4.9 64 83-146 104-174 (191)
500 PRK05031 tRNA (uracil-5-)-meth 86.7 1.5 3.2E-05 37.1 5.2 40 92-136 288-327 (362)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=254.76 Aligned_cols=154 Identities=29% Similarity=0.385 Sum_probs=129.1
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCCH----HHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLPY----EKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~~----~~~~~~l~~~ 61 (184)
.|.|+.+|++|+|.+++ |+++|+|||+++ |.+..|+.+++.. ..+.++ +++.++|+++
T Consensus 47 clN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V 124 (240)
T COG1126 47 CLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV 124 (240)
T ss_pred HHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc
Confidence 47899999999998865 457999999974 6666676666542 234443 4567889999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 138 (184)
|+.+..+ .+|.+|||||||||+|||||+.+|+++|+|||||+|||+...++.+.++++ |.|+|+|||++.|+..++
T Consensus 125 GL~~ka~-~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 125 GLADKAD-AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred Cchhhhh-hCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 9998776 589999999999999999999999999999999999999999988887654 789999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|||+.|++|++++. ++++++
T Consensus 204 drviFmd~G~iie~-g~p~~~ 223 (240)
T COG1126 204 DRVIFMDQGKIIEE-GPPEEF 223 (240)
T ss_pred heEEEeeCCEEEEe-cCHHHH
Confidence 99999999988763 355443
No 2
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-38 Score=244.82 Aligned_cols=167 Identities=26% Similarity=0.335 Sum_probs=140.5
Q ss_pred CcccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCC--HHHHHHHHhhCCC
Q psy11928 1 MYAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLP--YEKARKQLGTFGL 63 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~--~~~~~~~l~~~~l 63 (184)
++|+|+.+|++|+|.+++ .+.+.+|||+|...+.+..|+...+.... +.+ .+++.++++.+|+
T Consensus 51 r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL 130 (252)
T COG1124 51 RLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGL 130 (252)
T ss_pred HHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCC
Confidence 368999999999999875 45699999999877888888876665432 222 3558899999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcC
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~ 139 (184)
.....+++|.+|||||+||++|||||+.+|++||+|||||+||+....++++++.+ ++.|+|+||||+..+..+||
T Consensus 131 ~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 131 PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred CHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh
Confidence 87666789999999999999999999999999999999999999999999999864 46799999999999999999
Q ss_pred eEEEEeCCeEEEecC-------ChhHHHHHHHHHh
Q psy11928 140 TLWVIENQTIEEIDG-------DFDDYRKELLEAL 167 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~-------~~~~~~~~~~~~~ 167 (184)
|+++|++|++++... +...|.+++++..
T Consensus 211 Ri~Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~ 245 (252)
T COG1124 211 RIAVMDNGQIVEIGPTEELLSHPSHPYTRELLEAV 245 (252)
T ss_pred heeeeeCCeEEEeechhhhhcCCccHHHHHHHHhh
Confidence 999999999987432 2345666666554
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=254.99 Aligned_cols=149 Identities=25% Similarity=0.372 Sum_probs=125.0
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHH---HHhcCCCH----HHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYL---QRLFNLPY----EKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~---~~~~~~~~----~~~~~~l~~ 60 (184)
.+.++.+|++|+|.+++ |++||++||+++ +-...|+.+++ ....+.++ .++.++++.
T Consensus 51 ~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLel 128 (339)
T COG1135 51 LINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL 128 (339)
T ss_pred HHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHH
Confidence 46789999999998764 568999999985 33334444433 33334443 457789999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~ 136 (184)
+||++..+ ++|.+|||||||||+|||||+.+|+|||+|||||+|||.+.+.++++|++ +|.||++|||.++.++.
T Consensus 129 VgL~dk~~-~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ 207 (339)
T COG1135 129 VGLSDKAD-RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKR 207 (339)
T ss_pred cCChhhhc-cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHH
Confidence 99996665 59999999999999999999999999999999999999999999988864 57899999999999999
Q ss_pred hcCeEEEEeCCeEEEec
Q psy11928 137 TECTLWVIENQTIEEID 153 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~ 153 (184)
+|+|+.+|++|++++.+
T Consensus 208 ic~rVavm~~G~lvE~G 224 (339)
T COG1135 208 ICDRVAVLDQGRLVEEG 224 (339)
T ss_pred HhhhheEeeCCEEEEec
Confidence 99999999999998743
No 4
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-37 Score=241.42 Aligned_cols=159 Identities=30% Similarity=0.383 Sum_probs=130.2
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHHH----HHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARK----QLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~----~l~~~ 61 (184)
.|.|+++|++|+|.+.+ ++++|++||... ..+++.+|+...+....+.++..+++ -|+.+
T Consensus 53 ~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~V 132 (263)
T COG1127 53 LILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELV 132 (263)
T ss_pred HHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhc
Confidence 47899999999998753 467999999875 44555566544444455566554443 47889
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhh
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~ 137 (184)
||.....++.|++|||||++|++||||++.+|+++++||||+||||.+...+.++|++ ++.|+++||||++.+..+
T Consensus 133 GL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i 212 (263)
T COG1127 133 GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTI 212 (263)
T ss_pred CCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhh
Confidence 9987734579999999999999999999999999999999999999999888888764 478999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
||+++++.+|+|. +.|+.++..+
T Consensus 213 ~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 213 ADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred hceEEEEeCCEEE-EeCCHHHHHh
Confidence 9999999999996 5777766543
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=243.28 Aligned_cols=151 Identities=26% Similarity=0.345 Sum_probs=126.1
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCH----HHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPY----EKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~l~~~~l 63 (184)
.|.++++|++|+|.+++ |++|||+-|... +.+.+|+.+++... .++++ +++.++|+.+|+
T Consensus 46 MINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqig--LFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL 123 (309)
T COG1125 46 MINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL 123 (309)
T ss_pred HHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcc--cCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCC
Confidence 46789999999998764 678999999864 45555665555432 22332 467899999999
Q ss_pred Cc-ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhc
Q psy11928 64 AG-HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 64 ~~-~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~ 138 (184)
+. ...+++|++|||||||||.+||||+.+|+++||||||++|||.+|..+.+.+. ++++|||+||||++++.+++
T Consensus 124 ~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLa 203 (309)
T COG1125 124 DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLA 203 (309)
T ss_pred CHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhh
Confidence 75 34457999999999999999999999999999999999999999998888775 45899999999999999999
Q ss_pred CeEEEEeCCeEEEecC
Q psy11928 139 CTLWVIENQTIEEIDG 154 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~ 154 (184)
|||.+|++|+++.+..
T Consensus 204 dri~vm~~G~i~Q~~~ 219 (309)
T COG1125 204 DRIAVMDAGEIVQYDT 219 (309)
T ss_pred ceEEEecCCeEEEeCC
Confidence 9999999999987643
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=243.70 Aligned_cols=144 Identities=28% Similarity=0.326 Sum_probs=119.0
Q ss_pred CcccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC----CHHHHHHHHhhCCCCccc
Q psy11928 1 MYAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL----PYEKARKQLGTFGLAGHA 67 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~ 67 (184)
++++|+.+|++|+|.+++ ...+||+||++. +.++.|+.+++.. ..+. ..+++.++++.+|+.++.
T Consensus 47 riiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~ 124 (248)
T COG1116 47 RLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE 124 (248)
T ss_pred HHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh
Confidence 368999999999999875 347999999985 4455555544322 1111 124688899999999887
Q ss_pred ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecCHHHHHhhcCeEEE
Q psy11928 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l----~~~~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
+ ++|++|||||||||+|||||+.+|++|||||||++||..++..+.+.+ .+.+.||++||||.+++-.++|||++
T Consensus 125 ~-~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivv 203 (248)
T COG1116 125 D-KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV 203 (248)
T ss_pred h-cCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEE
Confidence 6 599999999999999999999999999999999999999987766555 45689999999999999999999999
Q ss_pred EeCC
Q psy11928 144 IENQ 147 (184)
Q Consensus 144 l~~g 147 (184)
|.++
T Consensus 204 l~~~ 207 (248)
T COG1116 204 LSNR 207 (248)
T ss_pred ecCC
Confidence 9984
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-36 Score=237.06 Aligned_cols=146 Identities=29% Similarity=0.392 Sum_probs=121.0
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|.|+.+|++|+|.+++ +.+|||+||+.+ |-+..|+.+++.. ..+.. .+++..+++
T Consensus 50 iig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n--Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~ 127 (226)
T COG1136 50 LLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN--LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLE 127 (226)
T ss_pred HHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC--CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHH
Confidence 57899999999998653 457999999975 4455566555442 22222 345678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+.+...+++|++|||||||||+|||||+.+|+++|+||||.+||..+.+.+++++.+. +.|||+||||...+.
T Consensus 128 ~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 128 VLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred hcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 9999876665689999999999999999999999999999999999999999999998654 679999999999997
Q ss_pred hhcCeEEEEeCCeEE
Q psy11928 136 DTECTLWVIENQTIE 150 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~ 150 (184)
.|||++.+++|++.
T Consensus 208 -~~dr~i~l~dG~~~ 221 (226)
T COG1136 208 -YADRVIELKDGKIE 221 (226)
T ss_pred -hCCEEEEEeCCeee
Confidence 79999999999853
No 8
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=241.90 Aligned_cols=153 Identities=26% Similarity=0.307 Sum_probs=125.2
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----CC----CHHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----NL----PYEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----~~----~~~~~~~~l~~ 60 (184)
+|+|++.|++|+|.+++ .++|||+||++. +...+|+.+++.... .. .+.++.++|+.
T Consensus 47 iIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~l 124 (345)
T COG1118 47 IIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRL 124 (345)
T ss_pred HHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHH
Confidence 68999999999998764 357999999985 344455554443211 11 13568889999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~ 136 (184)
+.++...+ ++|.+|||||||||+|||||+..|++||||||+++||...++.+...|. +++.|.++||||.+++.+
T Consensus 125 vqL~~la~-ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 125 VQLEGLAD-RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred hcccchhh-cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 99987765 5999999999999999999999999999999999999998877766664 458899999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
+|||+++|++|+|+.. +++++
T Consensus 204 ladrvvvl~~G~Ieqv-g~p~e 224 (345)
T COG1118 204 LADRVVVLNQGRIEQV-GPPDE 224 (345)
T ss_pred hcceEEEecCCeeeee-CCHHH
Confidence 9999999999999764 44444
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-36 Score=236.48 Aligned_cols=155 Identities=27% Similarity=0.344 Sum_probs=126.3
Q ss_pred cccCcccCCceeEEecCC--------eEEEEEecCCCCCCCccCCHHHHHHHh--cC---------CCHHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNHR--------LRIGRFDQHSGEHLTAEETPAEYLQRL--FN---------LPYEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~--------~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~---------~~~~~~~~~l~~~~ 62 (184)
.|+|+++|++|+|.+.+. .+||||||....+.+...|+.+++... .+ .+++++.+.|+++|
T Consensus 49 ~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vg 128 (254)
T COG1121 49 AILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVG 128 (254)
T ss_pred HHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcC
Confidence 578999999999987542 579999996542334456777766531 11 12367889999999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~ 139 (184)
+.+..+ +++++|||||+|||.|||||+++|++|+|||||+|+|+.++..+.++|+++ |+||++||||+..+..++|
T Consensus 129 m~~~~~-r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 129 MEDLRD-RQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFD 207 (254)
T ss_pred chhhhC-CcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCC
Confidence 997775 699999999999999999999999999999999999999999999998654 7899999999999999999
Q ss_pred eEEEEeCCeEEEecCChhHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++.++...+ . .|++++.
T Consensus 208 ~vi~Ln~~~~-~-~G~~~~~ 225 (254)
T COG1121 208 RVICLNRHLI-A-SGPPEEV 225 (254)
T ss_pred EEEEEcCeeE-e-ccChhhc
Confidence 9998876544 3 4555443
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-36 Score=249.14 Aligned_cols=159 Identities=29% Similarity=0.350 Sum_probs=128.8
Q ss_pred CcccCcccCCceeEEecC---------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCH----HHHHHHHhhCCCCc
Q psy11928 1 MYAHCDLQPQQGELKKNH---------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EKARKQLGTFGLAG 65 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~l~~ 65 (184)
+.|+|+..|++|+|.+++ ++.||+|||++. |++++.+|+...+.......+ +++.++++.+++++
T Consensus 49 R~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~ 128 (352)
T COG3842 49 RMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG 128 (352)
T ss_pred HHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh
Confidence 468999999999998764 578999999985 445555554322221222222 46889999999998
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~~~i 141 (184)
+.. ++|.+|||||||||+|||||+.+|++||||||+|+||..-|.++...++ +.|.|.|+||||.+++..++|||
T Consensus 129 ~~~-R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI 207 (352)
T COG3842 129 FAD-RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRI 207 (352)
T ss_pred hhh-hChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccce
Confidence 776 5899999999999999999999999999999999999998877666554 56889999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~~ 161 (184)
++|++|+|.. .|++++++.
T Consensus 208 ~Vm~~G~I~Q-~gtP~eiY~ 226 (352)
T COG3842 208 AVMNDGRIEQ-VGTPEEIYE 226 (352)
T ss_pred EEccCCceee-cCCHHHHhh
Confidence 9999999975 566655443
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.8e-35 Score=240.99 Aligned_cols=157 Identities=29% Similarity=0.448 Sum_probs=128.9
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+.+|++|+|.+.+ ++++||+||++. +.+|+.+++ .++...++.. .+++.++++.+|+..
T Consensus 50 ~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l-~~~~~l~~~~~~~~~~~~~~~l~~~~L~~ 128 (293)
T COG1131 50 ILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENL-EFFARLYGLSKEEAEERIEELLELFGLED 128 (293)
T ss_pred HHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHH-HHHHHHhCCChhHHHHHHHHHHHHcCCch
Confidence 68999999999998764 346999999985 344444442 2333334432 357889999999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---C-cEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---K-GGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~-~tiiivsHd~~~~~~~~~~i 141 (184)
.. ++++++||+|||||++||+||+.+|+++||||||+||||.++..++++|+++ + .||+++||.+++++.+||+|
T Consensus 129 ~~-~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v 207 (293)
T COG1131 129 KA-NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRV 207 (293)
T ss_pred hh-CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEE
Confidence 44 4589999999999999999999999999999999999999999999999765 4 69999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~~ 161 (184)
+++++|+++. .++.+++..
T Consensus 208 ~il~~G~~~~-~g~~~~l~~ 226 (293)
T COG1131 208 IILNDGKIIA-EGTPEELKE 226 (293)
T ss_pred EEEeCCEEEE-eCCHHHHHH
Confidence 9999999975 556555443
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-35 Score=244.00 Aligned_cols=155 Identities=26% Similarity=0.329 Sum_probs=127.3
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|||+.+|++|+|.+++ .+.||+|||++. +.+.+|+.+++. ...+.+ .+++.+..+.+++++
T Consensus 48 ~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~ 125 (338)
T COG3839 48 MIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH 125 (338)
T ss_pred HHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh
Confidence 68999999999999764 468999999985 445555555443 222322 356788999999998
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i 141 (184)
.++ ++|.+|||||||||+|||||+.+|+++|||||+|+||...+..+...|++ ++.|+|+||||..++..++|||
T Consensus 126 lL~-r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri 204 (338)
T COG3839 126 LLN-RKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRI 204 (338)
T ss_pred HHh-cCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEE
Confidence 876 58999999999999999999999999999999999999988877766654 5789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|++...+.+.+-|
T Consensus 205 ~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 205 VVMNDGRIQQVGTPLELY 222 (338)
T ss_pred EEEeCCeeeecCChHHHh
Confidence 999999997644333334
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-35 Score=235.46 Aligned_cols=167 Identities=23% Similarity=0.255 Sum_probs=131.9
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCC--CCCCccCCHHHH--H-HHhcC-CC---HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSG--EHLTAEETPAEY--L-QRLFN-LP---YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~--~~l~~~~~~~~~--~-~~~~~-~~---~~~~~~~l~~~ 61 (184)
.|+|+++|.+|+|.+++ .+.+||+||.+. ..+++.+.+... . ...+. .+ .+.+.+.|+.+
T Consensus 47 ~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~ 126 (258)
T COG1120 47 CLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL 126 (258)
T ss_pred HHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHh
Confidence 47899999999999875 357999999864 234444433210 0 00011 11 23577889999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~ 137 (184)
|+.+... +++.+|||||||||.|||||+++|++|||||||++||+..+.+++++++++ +.|||+|+||++.+.++
T Consensus 127 ~~~~la~-r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 127 GLEHLAD-RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred CcHHHhc-CcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 9987775 589999999999999999999999999999999999999999999998754 58999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHHHHHHHHHhhh
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYRKELLEALGE 169 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 169 (184)
||++++|++|++...+.+.+...++.++....
T Consensus 206 ad~~i~lk~G~i~a~G~p~evlT~e~l~~Vyg 237 (258)
T COG1120 206 ADHLILLKDGKIVAQGTPEEVLTEENLREVYG 237 (258)
T ss_pred CCEEEEEECCeEEeecCcchhcCHHHHHHHhC
Confidence 99999999999986444455566766665543
No 14
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-35 Score=232.75 Aligned_cols=157 Identities=29% Similarity=0.413 Sum_probs=129.4
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~ 62 (184)
.++|+++|++|+|.+++ ++++|||||+|...+ ...|+.+-+. .+.+.+. +++.+.++.+|
T Consensus 49 ~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vg 127 (235)
T COG1122 49 LLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVG 127 (235)
T ss_pred HHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcC
Confidence 57999999999997543 467999999996443 4455555433 2333333 45778899999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhc
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~ 138 (184)
+.+..+ +++.+|||||||||+||.+|+.+|++|||||||++||+.++..+++.+.++ +.|+|++|||++++..+|
T Consensus 128 l~~~~~-r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~a 206 (235)
T COG1122 128 LEELLD-RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYA 206 (235)
T ss_pred chhhcc-CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhC
Confidence 988765 699999999999999999999999999999999999999999999999765 479999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHHHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
|++++|++|+++. .|++.++.+
T Consensus 207 d~v~vl~~G~i~~-~g~p~~i~~ 228 (235)
T COG1122 207 DRVVVLDDGKILA-DGDPAEIFN 228 (235)
T ss_pred CEEEEEECCEEee-cCCHHHHhh
Confidence 9999999999964 666544433
No 15
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-35 Score=234.70 Aligned_cols=153 Identities=25% Similarity=0.344 Sum_probs=125.4
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
.+.++++|++|+|.+++ ++++++|||... +.++.|+.++... ..+.+ .+++.+.++
T Consensus 73 ~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~ 150 (386)
T COG4175 73 LLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREERALEALE 150 (386)
T ss_pred HHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccchhHhhhhhcceeecCCCHHHHHHHHHHHHH
Confidence 36789999999998753 567999999875 4556666655432 22333 245788999
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l----~~~~~tiiivsHd~~~~~ 135 (184)
.+||+.+.+ ++|++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.| .++++|||+||||++++.
T Consensus 151 ~VgL~~~~~-~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAl 229 (386)
T COG4175 151 LVGLEGYAD-KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEAL 229 (386)
T ss_pred HcCchhhhh-cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHH
Confidence 999998776 589999999999999999999999999999999999998777666555 456899999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
++.+||.+|++|+|+. .|++++
T Consensus 230 riG~rIaimkdG~ivQ-~Gtp~e 251 (386)
T COG4175 230 RIGDRIAIMKDGEIVQ-VGTPEE 251 (386)
T ss_pred hccceEEEecCCeEEE-eCCHHH
Confidence 9999999999999986 454433
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-35 Score=226.68 Aligned_cols=164 Identities=27% Similarity=0.349 Sum_probs=135.3
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH-----------hcCC----CHH
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR-----------LFNL----PYE 52 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~-----------~~~~----~~~ 52 (184)
.|+|+.+|++|+|..++ ++++||+||.++ +.++.++++++.. ..++ ++.
T Consensus 49 ~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~ 126 (258)
T COG3638 49 SLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKA 126 (258)
T ss_pred HHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHH
Confidence 47899999999998764 467999999985 4455555544321 1121 124
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVS 128 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivs 128 (184)
.+.+.|+++|+.+.... +.++|||||||||+|||||+++|+++|.|||+++|||.+.+.+++.|++ .|.|+|++.
T Consensus 127 ~Al~aLervgi~~~A~q-ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nL 205 (258)
T COG3638 127 QALDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNL 205 (258)
T ss_pred HHHHHHHHcCcHHHHHH-HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46778999999877764 8999999999999999999999999999999999999999999999964 478999999
Q ss_pred cCHHHHHhhcCeEEEEeCCeEEEecCChhHHHHHHHHHhhh
Q psy11928 129 HDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGE 169 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 169 (184)
|+.+.+.++|+|++-|++|+++ |+|+..+..++.+..++.
T Consensus 206 H~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~~~~~~iYg 245 (258)
T COG3638 206 HQVDLAKKYADRIIGLKAGRIV-FDGPASELTDEALDEIYG 245 (258)
T ss_pred chHHHHHHHHhhheEecCCcEE-EeCChhhhhHHHHHHHhc
Confidence 9999999999999999999997 688888877776666554
No 17
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-35 Score=221.31 Aligned_cols=157 Identities=25% Similarity=0.358 Sum_probs=129.3
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|++++.|++|.|.+++ +++||.++.+.. ..+|+++|+. ++...+++. +.++.++.+.+++.+
T Consensus 47 miatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~-~Fa~L~~l~~~~~kari~~l~k~l~l~~ 125 (245)
T COG4555 47 MIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK-YFARLNGLSRKEIKARIAELSKRLQLLE 125 (245)
T ss_pred HHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHhChHH
Confidence 57899999999998763 678999995542 3455555532 333444433 356778899999988
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~ 142 (184)
..+ +++.+||.||||||+|||||+++|++++|||||||||..++..+.+.+.+. +.+||++||++++++.+||+++
T Consensus 126 ~~~-rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvi 204 (245)
T COG4555 126 YLD-RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204 (245)
T ss_pred HHH-HHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEE
Confidence 776 589999999999999999999999999999999999999999999988765 6799999999999999999999
Q ss_pred EEeCCeEEEecCChhHHHH
Q psy11928 143 VIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 143 ~l~~g~i~~~~~~~~~~~~ 161 (184)
++++|+++. .++.+....
T Consensus 205 vlh~Gevv~-~gs~~~l~~ 222 (245)
T COG4555 205 VLHKGEVVL-EGSIEALDA 222 (245)
T ss_pred EEecCcEEE-cCCHHHHHH
Confidence 999999974 777766543
No 18
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2e-34 Score=216.57 Aligned_cols=148 Identities=27% Similarity=0.370 Sum_probs=122.0
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCC----HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~ 61 (184)
.|++..+|+.|+|.+++ +++||+|||+.. +..++++|+. +.....+.+ ++++.+.|+.+
T Consensus 47 Li~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA-~pL~v~G~~~~~i~~rV~~~L~~V 125 (223)
T COG2884 47 LIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA-LPLRVIGKPPREIRRRVSEVLDLV 125 (223)
T ss_pred HHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh-hhhhccCCCHHHHHHHHHHHHHHh
Confidence 46788999999998653 678999999975 3344444432 212222222 35678899999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHHHHHhhc
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~ 138 (184)
||.+..+. .|.+|||||||||+||||++++|++||.||||.+|||....++++++.+ .|.||+|.|||.+.+....
T Consensus 126 gL~~k~~~-lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 126 GLKHKARA-LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred ccchhhhc-CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 99877764 8999999999999999999999999999999999999999998888765 4789999999999999999
Q ss_pred CeEEEEeCCeEEE
Q psy11928 139 CTLWVIENQTIEE 151 (184)
Q Consensus 139 ~~i~~l~~g~i~~ 151 (184)
.|++.+++|+++.
T Consensus 205 ~rvl~l~~Grl~~ 217 (223)
T COG2884 205 HRVLALEDGRLVR 217 (223)
T ss_pred CcEEEEeCCEEEe
Confidence 9999999999975
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.7e-34 Score=235.57 Aligned_cols=155 Identities=27% Similarity=0.325 Sum_probs=127.0
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +....|+.+++. ..++.. ..++.++++.+++.
T Consensus 52 ~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 129 (306)
T PRK13537 52 MLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDN--LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE 129 (306)
T ss_pred HHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 58999999999998753 356999999974 334455555543 223322 23466889999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
...+ +++++||||||||++||+||+++|+++||||||+|||+.++..++++|+++ +.|||++||++++++.+||++
T Consensus 130 ~~~~-~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i 208 (306)
T PRK13537 130 NKAD-AKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRL 208 (306)
T ss_pred hHhc-CchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 6654 589999999999999999999999999999999999999999999999764 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
++|++|+++. .++.+++.
T Consensus 209 ~il~~G~i~~-~g~~~~l~ 226 (306)
T PRK13537 209 CVIEEGRKIA-EGAPHALI 226 (306)
T ss_pred EEEECCEEEE-ECCHHHHH
Confidence 9999999975 56655553
No 20
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-34 Score=238.62 Aligned_cols=154 Identities=22% Similarity=0.235 Sum_probs=126.8
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+.+|++|+|.+++ ++.|||+||++. +.+..|+.+++.. ..+.+ .+++.++++.+|+++
T Consensus 49 ~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 126 (356)
T PRK11650 49 MVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYA--LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP 126 (356)
T ss_pred HHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--ccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence 68999999999998764 346999999974 4455566655432 12222 245678899999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|+|+||||++++..+||++
T Consensus 127 ~~~-~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i 205 (356)
T PRK11650 127 LLD-RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV 205 (356)
T ss_pred Hhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 665 58999999999999999999999999999999999999999999888764 3689999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|++.. .++++++
T Consensus 206 ~vl~~G~i~~-~g~~~~~ 222 (356)
T PRK11650 206 VVMNGGVAEQ-IGTPVEV 222 (356)
T ss_pred EEEeCCEEEE-ECCHHHH
Confidence 9999999976 4555544
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.8e-34 Score=236.92 Aligned_cols=153 Identities=26% Similarity=0.360 Sum_probs=125.5
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~ 60 (184)
.|+|+++|++|+|.+++ +++|||+||++. +....|+.+++.. ..+.+ .+++.++++.
T Consensus 50 ~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~ 127 (343)
T TIGR02314 50 CVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLAL 127 (343)
T ss_pred HHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 58999999999998653 346999999974 4444555555432 12222 2356788999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~ 136 (184)
+|+.+..+ +++++|||||||||+|||||+.+|++|||||||++||+.++..++++|++. +.|||+||||++++.+
T Consensus 128 vgL~~~~~-~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 128 VGLGDKHD-SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR 206 (343)
T ss_pred cCCchhhh-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99987665 589999999999999999999999999999999999999999999988753 6899999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
+||++++|++|++++ .++..+
T Consensus 207 ~~d~v~vl~~G~iv~-~g~~~~ 227 (343)
T TIGR02314 207 ICDCVAVISNGELIE-QGTVSE 227 (343)
T ss_pred hCCEEEEEECCEEEE-EcCHHH
Confidence 999999999999976 454433
No 22
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=7.4e-34 Score=232.62 Aligned_cols=155 Identities=26% Similarity=0.376 Sum_probs=126.8
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....|+.+++.. .++.. .+++.++++.+|+.
T Consensus 38 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 115 (302)
T TIGR01188 38 MLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG 115 (302)
T ss_pred HHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 68999999999998754 235999999874 3444555555432 22222 23577899999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
...+ +++++|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++ +.|||++||+++++..+||++
T Consensus 116 ~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v 194 (302)
T TIGR01188 116 EAAD-RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194 (302)
T ss_pred hHhC-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 6654 589999999999999999999999999999999999999999999998764 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
++|++|+++. .++.+++.
T Consensus 195 ~~l~~G~i~~-~g~~~~l~ 212 (302)
T TIGR01188 195 AIIDHGRIIA-EGTPEELK 212 (302)
T ss_pred EEEECCEEEE-ECCHHHHH
Confidence 9999999975 55555543
No 23
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=8.5e-34 Score=236.52 Aligned_cols=155 Identities=25% Similarity=0.286 Sum_probs=127.3
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+.+|++|+|.+++ ++.+||+||++. +.+..++.+++.. ..+.+ ..++.++++.+|+++
T Consensus 49 ~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~ 126 (353)
T TIGR03265 49 IIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA--LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG 126 (353)
T ss_pred HHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc
Confidence 68999999999998764 356999999974 4444555555432 12222 245788999999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||||||+|||||+.+|+++||||||++||+.++.++.+.|++ .+.|+|+||||++++..+||++
T Consensus 127 ~~~-~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i 205 (353)
T TIGR03265 127 SER-KYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRI 205 (353)
T ss_pred hhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 665 58999999999999999999999999999999999999999999988865 3789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
++|++|+++. .++.+++.
T Consensus 206 ~vl~~G~i~~-~g~~~~~~ 223 (353)
T TIGR03265 206 VVMNHGVIEQ-VGTPQEIY 223 (353)
T ss_pred EEEECCEEEE-EcCHHHHH
Confidence 9999999976 45554443
No 24
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=9.6e-34 Score=236.53 Aligned_cols=154 Identities=25% Similarity=0.329 Sum_probs=126.5
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
.|+|+++|++|+|.+++ ++.+||+||++. +.+..|+.+++.. ..+.. .+++.++++
T Consensus 38 ~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~--l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~ 115 (363)
T TIGR01186 38 MLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA--LFPHMTILQNTSLGPELLGWPEQERKEKALELLK 115 (363)
T ss_pred HHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc--CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 58999999999998754 357999999874 4455566655432 12222 245778899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|++...+ +++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.+.+. +.|||+||||++++.
T Consensus 116 ~vgL~~~~~-~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~ 194 (363)
T TIGR01186 116 LVGLEEYEH-RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAI 194 (363)
T ss_pred hcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999986665 589999999999999999999999999999999999999999999988643 689999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||+|++|++|+++. .++++++
T Consensus 195 ~~~drI~vl~~G~iv~-~g~~~ei 217 (363)
T TIGR01186 195 RIGDRIVIMKAGEIVQ-VGTPDEI 217 (363)
T ss_pred HhCCEEEEEeCCEEEe-eCCHHHH
Confidence 9999999999999975 4554443
No 25
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=235.56 Aligned_cols=154 Identities=24% Similarity=0.340 Sum_probs=127.4
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+.+|++|+|.+++ ++++||+||++. +.+..|+.+++.. ..+.. .+++.++++.+|+..
T Consensus 51 ~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~--lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~ 128 (351)
T PRK11432 51 LVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG 128 (351)
T ss_pred HHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--cCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch
Confidence 58999999999998764 357999999974 4455566555432 12222 245778999999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||||||+|||||+.+|+++||||||++||+..+.++.+.|++ .+.|+|+||||.+++..+||++
T Consensus 129 ~~~-r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i 207 (351)
T PRK11432 129 FED-RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTV 207 (351)
T ss_pred hhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 665 68999999999999999999999999999999999999999999988864 3789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|++.. .++++++
T Consensus 208 ~vm~~G~i~~-~g~~~~~ 224 (351)
T PRK11432 208 IVMNKGKIMQ-IGSPQEL 224 (351)
T ss_pred EEEECCEEEE-EcCHHHH
Confidence 9999999976 4555544
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-33 Score=222.29 Aligned_cols=153 Identities=28% Similarity=0.330 Sum_probs=123.9
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c-CCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F-NLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~-~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++... . ... .+++.++++
T Consensus 45 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 122 (235)
T cd03261 45 LIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA--LFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLE 122 (235)
T ss_pred HHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc--cCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 58999999999998653 235999999874 33445666554321 1 122 234677899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+....+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++. +.|||+||||++++.
T Consensus 123 ~~~l~~~~~-~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 123 AVGLRGAED-LYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 999976654 589999999999999999999999999999999999999999999998763 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
.+||++++|++|++.. .++.++
T Consensus 202 ~~~d~v~~l~~G~i~~-~g~~~~ 223 (235)
T cd03261 202 AIADRIAVLYDGKIVA-EGTPEE 223 (235)
T ss_pred HhcCEEEEEECCeEEE-ecCHHH
Confidence 9999999999999864 555443
No 27
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.2e-33 Score=234.58 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=127.2
Q ss_pred cccCcccCCc--eeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQ--GELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~--G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l 63 (184)
+|+|+.+|++ |+|.+++ ++.|||+||++. +.+..|+.+++.. ..+.+ ..++.++++.+|+
T Consensus 50 ~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL 127 (362)
T TIGR03258 50 AIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL 127 (362)
T ss_pred HHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 5899999999 9998754 346999999974 4455566655432 22222 2457788999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----c-CcEEEEEecCHHHHHhhc
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----Y-KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~-~~tiiivsHd~~~~~~~~ 138 (184)
++..+ +++.+|||||||||+|||||+.+|+++||||||++||+..+.++.+.|.+ . +.|+|+||||++++..+|
T Consensus 128 ~~~~~-~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~ 206 (362)
T TIGR03258 128 GDAAA-HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLA 206 (362)
T ss_pred Cchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhC
Confidence 87665 58999999999999999999999999999999999999999999988864 2 679999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
|++++|++|+++. .++++++.
T Consensus 207 dri~vl~~G~i~~-~g~~~~~~ 227 (362)
T TIGR03258 207 DKAGIMKDGRLAA-HGEPQALY 227 (362)
T ss_pred CEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999975 55555443
No 28
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2e-33 Score=233.24 Aligned_cols=155 Identities=26% Similarity=0.314 Sum_probs=126.9
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++. ..++.. .+++.++++.+++.
T Consensus 86 ~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~ 163 (340)
T PRK13536 86 MILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN--LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE 163 (340)
T ss_pred HHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCcc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 58999999999998754 346999999874 334455555443 222322 23456789999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
+..+ +++++||||||||++||+||+++|+++||||||+|||+.++.++++.|.++ +.|||++||++++++.+||++
T Consensus 164 ~~~~-~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i 242 (340)
T PRK13536 164 SKAD-ARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL 242 (340)
T ss_pred hhhC-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 6665 589999999999999999999999999999999999999999999999764 689999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
++|++|+++. .++.+++.
T Consensus 243 ~il~~G~i~~-~g~~~~l~ 260 (340)
T PRK13536 243 CVLEAGRKIA-EGRPHALI 260 (340)
T ss_pred EEEECCEEEE-EcCHHHHH
Confidence 9999999974 56665543
No 29
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.8e-33 Score=234.84 Aligned_cols=154 Identities=23% Similarity=0.295 Sum_probs=127.1
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..++.+++.. ..+.+ .+++.++++.+|+++
T Consensus 59 ~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 136 (375)
T PRK09452 59 LIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYA--LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE 136 (375)
T ss_pred HHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch
Confidence 68999999999998764 356999999974 4555666665532 12222 235678899999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|++ .+.|+|+||||.+++..+||++
T Consensus 137 ~~~-~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri 215 (375)
T PRK09452 137 FAQ-RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215 (375)
T ss_pred hhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 665 58999999999999999999999999999999999999999999988865 3789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|++.. .++++++
T Consensus 216 ~vl~~G~i~~-~g~~~~i 232 (375)
T PRK09452 216 VVMRDGRIEQ-DGTPREI 232 (375)
T ss_pred EEEECCEEEE-EcCHHHH
Confidence 9999999976 4555444
No 30
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.5e-33 Score=218.76 Aligned_cols=146 Identities=27% Similarity=0.354 Sum_probs=120.5
Q ss_pred cccCcccCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+.+|++|+|.+++ ++.+||+||++...+ ...++.+++... ......++.++++.+|+.+..+ +
T Consensus 45 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~ 122 (205)
T cd03226 45 ILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-R 122 (205)
T ss_pred HHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-C
Confidence 58999999999998764 236999999863111 133555554321 1222356788999999986664 5
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++. +.|||++|||++++..+||++++|++|
T Consensus 123 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 202 (205)
T cd03226 123 HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202 (205)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999765 679999999999999999999999999
Q ss_pred eE
Q psy11928 148 TI 149 (184)
Q Consensus 148 ~i 149 (184)
++
T Consensus 203 ~i 204 (205)
T cd03226 203 AI 204 (205)
T ss_pred EE
Confidence 86
No 31
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.2e-33 Score=220.87 Aligned_cols=145 Identities=27% Similarity=0.421 Sum_probs=119.4
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ ++.++|+||++. +....++.+++.. ..+.. .+++.++++.
T Consensus 48 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 125 (216)
T TIGR00960 48 LILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHR--LLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEK 125 (216)
T ss_pred HHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcc--ccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 58999999999998753 136999999874 3344455555432 11221 2457788999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 137 (184)
+|+.+..+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||++++..+
T Consensus 126 ~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 204 (216)
T TIGR00960 126 VGLEGKAH-ALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY 204 (216)
T ss_pred cCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 99986654 589999999999999999999999999999999999999999999998765 67999999999999999
Q ss_pred cCeEEEEeCCeE
Q psy11928 138 ECTLWVIENQTI 149 (184)
Q Consensus 138 ~~~i~~l~~g~i 149 (184)
||++++|++|++
T Consensus 205 ~d~i~~l~~G~i 216 (216)
T TIGR00960 205 RHRTLTLSRGRL 216 (216)
T ss_pred CCEEEEEeCCcC
Confidence 999999999864
No 32
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-33 Score=234.48 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=125.6
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+.+|++|+|.+++ ++.+||+||++. +.+..|+.+++... .+.. .+++.++++.+++.+
T Consensus 64 ~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~ 141 (377)
T PRK11607 64 MLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE 141 (377)
T ss_pred HHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 58999999999998764 346999999974 44555666555321 2222 245678899999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.+. +.+.|+|+||||++++..+||++
T Consensus 142 ~~~-~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri 220 (377)
T PRK11607 142 FAK-RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220 (377)
T ss_pred hhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 665 5899999999999999999999999999999999999999988876654 45789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|+++. .++++++
T Consensus 221 ~vl~~G~i~~-~g~~~~~ 237 (377)
T PRK11607 221 AIMNRGKFVQ-IGEPEEI 237 (377)
T ss_pred EEEeCCEEEE-EcCHHHH
Confidence 9999999976 4555443
No 33
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=240.10 Aligned_cols=152 Identities=24% Similarity=0.273 Sum_probs=129.9
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c-CC----CHHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F-NL----PYEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~-~~----~~~~~~~~l~~ 60 (184)
+|+|+.+|++|+|.+++ ++++-++||+|...|++..|+.+.+... + .. .++++.++++.
T Consensus 336 ~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~ 415 (539)
T COG1123 336 ILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLEL 415 (539)
T ss_pred HHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHH
Confidence 68999999999998754 3479999999987788888887665432 1 11 12357788999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~ 136 (184)
+|+.....+++|.+||||||||++|||||+.+|+++++|||||.||+..+..+.++|++ ++.|.|+||||+.+++.
T Consensus 416 VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~ 495 (539)
T COG1123 416 VGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY 495 (539)
T ss_pred cCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh
Confidence 99987544579999999999999999999999999999999999999999999998864 57899999999999999
Q ss_pred hcCeEEEEeCCeEEEec
Q psy11928 137 TECTLWVIENQTIEEID 153 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~ 153 (184)
+||||++|.+|++++.+
T Consensus 496 i~drv~vm~~G~iVE~G 512 (539)
T COG1123 496 IADRVAVMYDGRIVEEG 512 (539)
T ss_pred hCceEEEEECCeEEEeC
Confidence 99999999999998843
No 34
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-33 Score=218.15 Aligned_cols=147 Identities=29% Similarity=0.360 Sum_probs=120.8
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ..+.. .+++.++++.+|+..
T Consensus 45 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 122 (213)
T cd03259 45 LIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG 122 (213)
T ss_pred HHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 58999999999998753 236999999874 3334455555432 11121 234678899999986
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++..+||++
T Consensus 123 ~~~-~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 201 (213)
T cd03259 123 LLN-RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRI 201 (213)
T ss_pred hhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEE
Confidence 654 589999999999999999999999999999999999999999999999753 679999999999999999999
Q ss_pred EEEeCCeEEE
Q psy11928 142 WVIENQTIEE 151 (184)
Q Consensus 142 ~~l~~g~i~~ 151 (184)
++|++|++..
T Consensus 202 ~~l~~G~i~~ 211 (213)
T cd03259 202 AVMNEGRIVQ 211 (213)
T ss_pred EEEECCEEEe
Confidence 9999999864
No 35
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.1e-33 Score=231.39 Aligned_cols=150 Identities=20% Similarity=0.259 Sum_probs=122.1
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hc--CCCH----HHHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF--NLPY----EKARKQL 58 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~--~~~~----~~~~~~l 58 (184)
.|+|+++|++|+|.+++ +..++|+||++...+.+..++.+++.. .+ ..+. +++.+++
T Consensus 66 ~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l 145 (331)
T PRK15079 66 AIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMM 145 (331)
T ss_pred HHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 58999999999998653 246999999974234455566555432 11 2232 3467789
Q ss_pred hhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHH
Q psy11928 59 GTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLI 134 (184)
Q Consensus 59 ~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 134 (184)
+.+|+.....++++.+|||||+|||+|||||+.+|++||+||||++||+.++.++.++|++. +.|+|+||||++++
T Consensus 146 ~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~ 225 (331)
T PRK15079 146 LKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV 225 (331)
T ss_pred HHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 99999543334689999999999999999999999999999999999999999999988653 67999999999999
Q ss_pred HhhcCeEEEEeCCeEEE
Q psy11928 135 RDTECTLWVIENQTIEE 151 (184)
Q Consensus 135 ~~~~~~i~~l~~g~i~~ 151 (184)
..+||++++|.+|++++
T Consensus 226 ~~~~dri~vl~~G~ive 242 (331)
T PRK15079 226 KHISDRVLVMYLGHAVE 242 (331)
T ss_pred HHhCCEEEEEECCEEEE
Confidence 99999999999999976
No 36
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-34 Score=225.61 Aligned_cols=154 Identities=22% Similarity=0.321 Sum_probs=127.0
Q ss_pred CcccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH-hcCCCHHHHHHHHhhCCCC
Q psy11928 1 MYAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR-LFNLPYEKARKQLGTFGLA 64 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~ 64 (184)
+.|+|+.+|++|.|.+++ +++||||||+.. +++.+++..++.. .+........++.+.+|++
T Consensus 42 n~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR--LFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~ 119 (352)
T COG4148 42 NMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR--LFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIE 119 (352)
T ss_pred HHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc--cccceEEecchhhhhcccchHhHHHHHHHhCcH
Confidence 368999999999998653 568999999974 4444444433321 1222356788899999999
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~ 140 (184)
+.++ ++|..|||||||||+|+|||+..|++||||||.++||...+.+++.++.++ +..|++|||.++++.+++|+
T Consensus 120 hLL~-R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~ 198 (352)
T COG4148 120 HLLD-RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR 198 (352)
T ss_pred HHHh-hCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhhe
Confidence 7775 689999999999999999999999999999999999999999999998654 57899999999999999999
Q ss_pred EEEEeCCeEEEecCChhH
Q psy11928 141 LWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 141 i~~l~~g~i~~~~~~~~~ 158 (184)
+++|++|++.. .|..++
T Consensus 199 vV~le~GkV~A-~g~~e~ 215 (352)
T COG4148 199 VVVLENGKVKA-SGPLEE 215 (352)
T ss_pred EEEecCCeEEe-cCcHHH
Confidence 99999999976 444433
No 37
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.7e-33 Score=232.69 Aligned_cols=154 Identities=25% Similarity=0.262 Sum_probs=126.1
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhc-------CCC----HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-------NLP----YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-------~~~----~~~~~~~l~~~ 61 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..++.+++.... ..+ .+++.++++.+
T Consensus 47 ~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~--l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (353)
T PRK10851 47 IIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA--LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV 124 (353)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcc--cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHc
Confidence 58999999999998754 246999999974 444555655543211 122 24577889999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~ 137 (184)
++++..+ +++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|++. +.|+|+||||++++..+
T Consensus 125 ~L~~~~~-~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~ 203 (353)
T PRK10851 125 QLAHLAD-RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEV 203 (353)
T ss_pred CCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 9987665 589999999999999999999999999999999999999999998888653 67999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|+++. .++.+++
T Consensus 204 ~Dri~vl~~G~i~~-~g~~~~i 224 (353)
T PRK10851 204 ADRVVVMSQGNIEQ-AGTPDQV 224 (353)
T ss_pred CCEEEEEECCEEEE-EcCHHHH
Confidence 99999999999975 4555444
No 38
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-33 Score=233.00 Aligned_cols=154 Identities=23% Similarity=0.217 Sum_probs=125.5
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..|+.+++... .+.. .+++.++++.+|++.
T Consensus 48 ~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 125 (369)
T PRK11000 48 MIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYA--LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH 125 (369)
T ss_pred HHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcc--cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence 68999999999998754 246999999874 44455665554321 1222 245778899999986
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++. +.|+|+||||++++..+||++
T Consensus 126 ~~~-~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i 204 (369)
T PRK11000 126 LLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI 204 (369)
T ss_pred hhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEE
Confidence 654 589999999999999999999999999999999999999999998888653 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|++.. .++.+++
T Consensus 205 ~vl~~G~i~~-~g~~~~i 221 (369)
T PRK11000 205 VVLDAGRVAQ-VGKPLEL 221 (369)
T ss_pred EEEECCEEEE-EcCHHHH
Confidence 9999999975 4555444
No 39
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-33 Score=229.80 Aligned_cols=151 Identities=23% Similarity=0.282 Sum_probs=123.4
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---h-cCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---L-FNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~-~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..|||+||++...+.+..++.+.+.. . .... .+++.++++
T Consensus 60 ~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 139 (327)
T PRK11308 60 LLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMA 139 (327)
T ss_pred HHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 58899999999998653 246999999974345555666544321 1 1222 245778999
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+.....++++++|||||+|||+|||||+.+|++||+||||++||+.++.+++++|.+. +.|+|+||||+..+.
T Consensus 140 ~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~ 219 (327)
T PRK11308 140 KVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVE 219 (327)
T ss_pred HCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 9999643334689999999999999999999999999999999999999999999988653 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEe
Q psy11928 136 DTECTLWVIENQTIEEI 152 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~ 152 (184)
.+||++++|.+|++++.
T Consensus 220 ~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 220 HIADEVMVMYLGRCVEK 236 (327)
T ss_pred HhCCEEEEEECCEEEEE
Confidence 99999999999999874
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.9e-33 Score=227.40 Aligned_cols=154 Identities=25% Similarity=0.310 Sum_probs=125.2
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++.. .++... +++.++++.+++.
T Consensus 49 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~ 126 (303)
T TIGR01288 49 MLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDN--LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE 126 (303)
T ss_pred HHhCCCCCCceEEEECCEECcccHHHHhhcEEEEecccc--CCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh
Confidence 58999999999998753 346999999874 3344555555431 222222 3456789999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
+..+ +++++||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++ +.|||++|||++++..+||++
T Consensus 127 ~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i 205 (303)
T TIGR01288 127 SKAD-VRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL 205 (303)
T ss_pred hHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 6554 589999999999999999999999999999999999999999999999765 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|+++. .++.++.
T Consensus 206 ~~l~~G~i~~-~g~~~~~ 222 (303)
T TIGR01288 206 CVLESGRKIA-EGRPHAL 222 (303)
T ss_pred EEEECCEEEE-EcCHHHH
Confidence 9999999864 5555444
No 41
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.2e-33 Score=227.07 Aligned_cols=155 Identities=25% Similarity=0.405 Sum_probs=128.4
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++.. .++.. .+++.++++.+|+.
T Consensus 47 ~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 124 (301)
T TIGR03522 47 IITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR 124 (301)
T ss_pred HHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 58999999999998754 246999999874 4445566665432 22322 24577889999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~ 142 (184)
+..+ ++++.||||||||++||+||+.+|+++||||||+|||+.+++++++.++++ +.|||++||+++++..+||+++
T Consensus 125 ~~~~-~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~ 203 (301)
T TIGR03522 125 PEQH-KKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVI 203 (301)
T ss_pred hHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEE
Confidence 7665 589999999999999999999999999999999999999999999999876 5799999999999999999999
Q ss_pred EEeCCeEEEecCChhHHH
Q psy11928 143 VIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 143 ~l~~g~i~~~~~~~~~~~ 160 (184)
++++|++.. .++.+++.
T Consensus 204 ~l~~G~i~~-~g~~~~~~ 220 (301)
T TIGR03522 204 IINKGKIVA-DKKLDELS 220 (301)
T ss_pred EEECCEEEE-eCCHHHHH
Confidence 999999974 66666553
No 42
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-33 Score=223.22 Aligned_cols=168 Identities=23% Similarity=0.249 Sum_probs=131.5
Q ss_pred cccCccc-C----CceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHH----HHhcCC-C----HH
Q psy11928 2 YAHCDLQ-P----QQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYL----QRLFNL-P----YE 52 (184)
Q Consensus 2 ~~~G~~~-p----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~----~~~~~~-~----~~ 52 (184)
.|.|+++ | .+|+|.+++ .+.|+++||+|...|++..++..-+ ....+. . .+
T Consensus 50 aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~ 129 (316)
T COG0444 50 AIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE 129 (316)
T ss_pred HHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHH
Confidence 3567776 3 568887643 3479999999875666666654332 222222 1 24
Q ss_pred HHHHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEE
Q psy11928 53 KARKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVII 126 (184)
Q Consensus 53 ~~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiii 126 (184)
++.++|+.+|+.+. ..+.+|.+|||||+|||.||.|++.+|++||.||||++||+..+.+++++|++ .+.|+|+
T Consensus 130 ~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiil 209 (316)
T COG0444 130 RAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALIL 209 (316)
T ss_pred HHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 67889999999853 33569999999999999999999999999999999999999999999998864 4789999
Q ss_pred EecCHHHHHhhcCeEEEEeCCeEEEecC-------ChhHHHHHHHHHhhh
Q psy11928 127 VSHDERLIRDTECTLWVIENQTIEEIDG-------DFDDYRKELLEALGE 169 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l~~g~i~~~~~-------~~~~~~~~~~~~~~~ 169 (184)
||||+..+.++||||.||..|++++... +.+.|.+.++..+..
T Consensus 210 ITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 210 ITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPR 259 (316)
T ss_pred EeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHHHHhCcc
Confidence 9999999999999999999999988432 335577776666543
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-33 Score=217.39 Aligned_cols=147 Identities=26% Similarity=0.318 Sum_probs=121.3
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. .++.. .+++.++++.+++.
T Consensus 45 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 122 (220)
T cd03265 45 MLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL 122 (220)
T ss_pred HHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 68999999999998754 246999999874 3344555554432 22222 23567889999997
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~ 140 (184)
...+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++|||++++..+|++
T Consensus 123 ~~~~-~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~ 201 (220)
T cd03265 123 EAAD-RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDR 201 (220)
T ss_pred HHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 6554 589999999999999999999999999999999999999999999988653 67999999999999999999
Q ss_pred EEEEeCCeEEE
Q psy11928 141 LWVIENQTIEE 151 (184)
Q Consensus 141 i~~l~~g~i~~ 151 (184)
++++++|++..
T Consensus 202 i~~l~~G~i~~ 212 (220)
T cd03265 202 VAIIDHGRIIA 212 (220)
T ss_pred EEEEeCCEEEE
Confidence 99999999975
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.1e-32 Score=217.85 Aligned_cols=153 Identities=29% Similarity=0.346 Sum_probs=123.1
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-----------C---HH
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-----------P---YE 52 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-----------~---~~ 52 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++... ... . .+
T Consensus 45 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (236)
T cd03219 45 LISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPR--LFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122 (236)
T ss_pred HHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccc--cccCCCHHHHHHHHHhhccccccccccccccHHHHHH
Confidence 58999999999998653 235999999874 34445555554321 110 1 23
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH 129 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH 129 (184)
++.++++.+|++...+ +++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.|.+. +.|||+|||
T Consensus 123 ~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH 201 (236)
T cd03219 123 RAEELLERVGLADLAD-RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEH 201 (236)
T ss_pred HHHHHHHHcCccchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 4677899999986554 589999999999999999999999999999999999999999999998754 579999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
|++++..+||+++++++|++.. .++.++
T Consensus 202 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 229 (236)
T cd03219 202 DMDVVMSLADRVTVLDQGRVIA-EGTPDE 229 (236)
T ss_pred CHHHHHHhCCEEEEEeCCEEEe-ecCHHH
Confidence 9999999999999999999864 455443
No 45
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-32 Score=218.62 Aligned_cols=155 Identities=26% Similarity=0.324 Sum_probs=124.0
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh-----------cC-C---CHH
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-----------FN-L---PYE 52 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-----------~~-~---~~~ 52 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++... .+ . ..+
T Consensus 46 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (241)
T cd03256 46 CLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQ 123 (241)
T ss_pred HHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCc--ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHH
Confidence 58999999999998653 235999999874 33344555544311 01 1 123
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEe
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS 128 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivs 128 (184)
++.++++.+++....+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|
T Consensus 124 ~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t 202 (241)
T cd03256 124 RALAALERVGLLDKAY-QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL 202 (241)
T ss_pred HHHHHHHHcCChhhhC-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5677899999976554 589999999999999999999999999999999999999999999988753 67999999
Q ss_pred cCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 129 HDERLIRDTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||++++..+||++++|++|+++. .++.+++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 233 (241)
T cd03256 203 HQVDLAREYADRIVGLKDGRIVF-DGPPAELT 233 (241)
T ss_pred CCHHHHHHhCCEEEEEECCEEEe-ecCHHHhh
Confidence 99999999999999999999875 55655543
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-32 Score=215.99 Aligned_cols=147 Identities=27% Similarity=0.305 Sum_probs=121.0
Q ss_pred cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~~ 68 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +....++.+++.. ..+.. .+++.++++.+|+....+
T Consensus 49 ~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 126 (220)
T cd03293 49 IIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDA--LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN 126 (220)
T ss_pred HHhCCCCCCceEEEECCEECccccCcEEEEecccc--cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh
Confidence 58999999999998764 356999999874 3344555555432 11221 245678899999976554
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
+++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++. +.|||+||||++++..+||++++|
T Consensus 127 -~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (220)
T cd03293 127 -AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205 (220)
T ss_pred -CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 589999999999999999999999999999999999999999999998653 679999999999999999999999
Q ss_pred e--CCeEEE
Q psy11928 145 E--NQTIEE 151 (184)
Q Consensus 145 ~--~g~i~~ 151 (184)
+ +|++++
T Consensus 206 ~~~~G~i~~ 214 (220)
T cd03293 206 SARPGRIVA 214 (220)
T ss_pred ECCCCEEEE
Confidence 9 799865
No 47
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-33 Score=245.67 Aligned_cols=160 Identities=37% Similarity=0.675 Sum_probs=134.9
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccccccccCCChhHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK 80 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k 80 (184)
+|+|+++|++|+|.+....++||++|++...+++..++.+.+.... .....++.++++.|++.....++++++||||||
T Consensus 357 ~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGek 436 (638)
T PRK10636 357 LLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEK 436 (638)
T ss_pred HHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHH
Confidence 6899999999999987667899999975333555566655543221 122456788999999964333468999999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
|||+||++++.+|++|||||||||||+.++..+.+.|.++++|||+||||++++..+||+++++++|+++.+.|++++|.
T Consensus 437 qRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 437 ARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999977789988885
Q ss_pred H
Q psy11928 161 K 161 (184)
Q Consensus 161 ~ 161 (184)
+
T Consensus 517 ~ 517 (638)
T PRK10636 517 Q 517 (638)
T ss_pred H
Confidence 4
No 48
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-32 Score=229.09 Aligned_cols=153 Identities=24% Similarity=0.356 Sum_probs=124.7
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +....++.+++.. ..+.. .+++.++++.
T Consensus 50 ~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~ 127 (343)
T PRK11153 50 CINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLEL 127 (343)
T ss_pred HHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 58999999999998753 246999999874 3344555555432 22222 2356788999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~ 136 (184)
+|+.+..+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++. +.|||++|||++++..
T Consensus 128 ~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~ 206 (343)
T PRK11153 128 VGLSDKAD-RYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKR 206 (343)
T ss_pred cCCchhhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99986654 589999999999999999999999999999999999999999999998754 6799999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
+||++++|++|+++. .++.++
T Consensus 207 ~~d~v~~l~~G~i~~-~g~~~~ 227 (343)
T PRK11153 207 ICDRVAVIDAGRLVE-QGTVSE 227 (343)
T ss_pred hCCEEEEEECCEEEE-EcCHHH
Confidence 999999999999975 454443
No 49
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=238.79 Aligned_cols=162 Identities=31% Similarity=0.549 Sum_probs=135.3
Q ss_pred CcccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh--------------c-------------------
Q psy11928 1 MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL--------------F------------------- 47 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~--------------~------------------- 47 (184)
++|+|...|++|+|......++||++|++. +....++.+.+... +
T Consensus 47 kilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (530)
T COG0488 47 KILAGELEPDSGEVTRPKGLRVGYLSQEPP--LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLE 124 (530)
T ss_pred HHHcCCCcCCCCeEeecCCceEEEeCCCCC--cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 378999999999999888889999999974 33344444332110 0
Q ss_pred ---CC-CHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcE
Q psy11928 48 ---NL-PYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG 123 (184)
Q Consensus 48 ---~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~t 123 (184)
.. .+.++..++..+|+... .+++++||||||.||+||+||+.+||+||||||||+||..++.||.++|.++.+|
T Consensus 125 ~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gt 202 (530)
T COG0488 125 ELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGT 202 (530)
T ss_pred hhcccchHHHHHHHHhcCCCCcc--cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCc
Confidence 00 02456678888999865 3589999999999999999999999999999999999999999999999998779
Q ss_pred EEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHHHHHHH
Q psy11928 124 VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEA 166 (184)
Q Consensus 124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~~~~~ 166 (184)
+|+||||.+|+..+|++|+.++.|++..|.|+++.|.+...+.
T Consensus 203 viiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~ 245 (530)
T COG0488 203 VIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAER 245 (530)
T ss_pred EEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887755433
No 50
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-33 Score=209.22 Aligned_cols=154 Identities=25% Similarity=0.283 Sum_probs=128.2
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh--cC--C---CHHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FN--L---PYEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~--~---~~~~~~~~l~~~~l~~ 65 (184)
.++|...|.+|+|.+++ .+.++++||+++ +....|+.+++... .+ . .++++..++.++|+..
T Consensus 44 LIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN--LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~ 121 (231)
T COG3840 44 LIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN--LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAG 121 (231)
T ss_pred HHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccc--cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhh
Confidence 57999999999998764 467999999974 55555555554421 11 1 2466888999999998
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
+.+ +.|.+|||||||||+|||+|+.+-+|++|||||++|||.-+.++..++.+. +.|++||||.++++.++++++
T Consensus 122 ~~~-RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~ 200 (231)
T COG3840 122 FLK-RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRV 200 (231)
T ss_pred Hhh-hCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhce
Confidence 876 589999999999999999999999999999999999999999999888653 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
+++++|+|.. .++..++
T Consensus 201 ~fl~~Gri~~-~g~~~~~ 217 (231)
T COG3840 201 VFLDNGRIAA-QGSTQEL 217 (231)
T ss_pred EEEeCCEEEe-eccHHHH
Confidence 9999999964 5555443
No 51
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.8e-33 Score=215.75 Aligned_cols=147 Identities=24% Similarity=0.341 Sum_probs=118.9
Q ss_pred cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHHhcC--------C---CHHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN--------L---PYEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~--------~---~~~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ +..++|+||++........++.+++..... . ..+++.++++.+++.
T Consensus 44 ~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 123 (213)
T cd03235 44 AILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS 123 (213)
T ss_pred HHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH
Confidence 68999999999999875 356999999874111122466666542110 1 123567889999997
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
...+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++
T Consensus 124 ~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i 202 (213)
T cd03235 124 ELAD-RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRV 202 (213)
T ss_pred HHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 6554 589999999999999999999999999999999999999999999998764 579999999999999999999
Q ss_pred EEEeCCeE
Q psy11928 142 WVIENQTI 149 (184)
Q Consensus 142 ~~l~~g~i 149 (184)
++|++|.+
T Consensus 203 ~~l~~~~~ 210 (213)
T cd03235 203 LLLNRTVV 210 (213)
T ss_pred EEEcCcEe
Confidence 99988743
No 52
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-32 Score=225.93 Aligned_cols=155 Identities=27% Similarity=0.351 Sum_probs=124.2
Q ss_pred cccCcccCCceeEEecC-----------------------------------CeEEEEEecCCCCCCCccCCHHHHHHH-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR- 45 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~- 45 (184)
.|+|+++|++|+|.+++ ++.|||+||++...+. ..++.+++..
T Consensus 52 ~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~ 130 (305)
T PRK13651 52 HLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFG 130 (305)
T ss_pred HHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhh
Confidence 58999999999997742 2358999998632232 3466665532
Q ss_pred --hcCCCH----HHHHHHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q psy11928 46 --LFNLPY----EKARKQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN 118 (184)
Q Consensus 46 --~~~~~~----~~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~ 118 (184)
..+... +++.++++.+|+. ... ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~ 209 (305)
T PRK13651 131 PVSMGVSKEEAKKRAAKYIELVGLDESYL-QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209 (305)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhhh-hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 122222 3567889999996 444 46899999999999999999999999999999999999999999999886
Q ss_pred hc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 119 EY---KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 119 ~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+. +.|||+||||++++..+||++++|++|+++. .++.+++
T Consensus 210 ~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~-~g~~~~~ 252 (305)
T PRK13651 210 NLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK-DGDTYDI 252 (305)
T ss_pred HHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 54 6899999999999999999999999999875 4555443
No 53
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=238.96 Aligned_cols=159 Identities=26% Similarity=0.505 Sum_probs=133.1
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCC-cccccccccCCChh
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLA-GHAHTIKMKDLSGG 78 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG 78 (184)
+|+|+++|++|+|.++++..+||++|++...+....++.+++.... ....+++.++++.+|+. ... ++++++||||
T Consensus 364 ~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgG 442 (530)
T PRK15064 364 TLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-KKSVKVLSGG 442 (530)
T ss_pred HHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-cCcccccCHH
Confidence 5899999999999998888899999986322334456666554321 12245678899999995 344 4689999999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
|||||+||||++.+|++|||||||+|||+.++..+.+.|.+++.|||+||||++++..+||+++++++|+++.+.+++.+
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~ 522 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEE 522 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999998756777766
Q ss_pred HHH
Q psy11928 159 YRK 161 (184)
Q Consensus 159 ~~~ 161 (184)
+.+
T Consensus 523 ~~~ 525 (530)
T PRK15064 523 YLR 525 (530)
T ss_pred HHH
Confidence 543
No 54
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.6e-32 Score=226.76 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=125.8
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+.+|++|+|.+++ ++.+||+||++. +.+..++.+++.. ..+.. .+++.++++.+++..
T Consensus 15 ~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 92 (325)
T TIGR01187 15 LLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEE 92 (325)
T ss_pred HHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--ccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcc
Confidence 58999999999998754 246999999874 4445566655432 11222 235678899999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|+|+||||++++..+||++
T Consensus 93 ~~~-~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i 171 (325)
T TIGR01187 93 FAD-RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI 171 (325)
T ss_pred hhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 665 589999999999999999999999999999999999999999999988653 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|++.. .++.+++
T Consensus 172 ~vl~~G~i~~-~g~~~~~ 188 (325)
T TIGR01187 172 AIMRKGKIAQ-IGTPEEI 188 (325)
T ss_pred EEEECCEEEE-EcCHHHH
Confidence 9999999975 4555444
No 55
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.3e-32 Score=213.75 Aligned_cols=147 Identities=30% Similarity=0.396 Sum_probs=122.9
Q ss_pred cccCcccCCceeEEecCC---------eEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNHR---------LRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~---------~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.|+|+.+|++|+|.+++. ..++|+||++. +....++.+++... +....+++.++++.+++....+
T Consensus 45 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~- 121 (208)
T cd03268 45 IILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPG--FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK- 121 (208)
T ss_pred HHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-
Confidence 579999999999987642 36999999864 44455666654321 2234566788999999976554
Q ss_pred ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
+++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.+.+. +.|+|++|||++++..+||++++|++
T Consensus 122 ~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 201 (208)
T cd03268 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINK 201 (208)
T ss_pred hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 589999999999999999999999999999999999999999999998754 67999999999999999999999999
Q ss_pred CeEEE
Q psy11928 147 QTIEE 151 (184)
Q Consensus 147 g~i~~ 151 (184)
|+++.
T Consensus 202 g~i~~ 206 (208)
T cd03268 202 GKLIE 206 (208)
T ss_pred CEEEe
Confidence 99864
No 56
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-33 Score=215.07 Aligned_cols=147 Identities=26% Similarity=0.358 Sum_probs=121.8
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~ 64 (184)
.|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ..+.. .+++.++++.+|+.
T Consensus 44 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 121 (211)
T cd03264 44 ILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG 121 (211)
T ss_pred HHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH
Confidence 58999999999998764 346999999874 3344566555432 11222 23567789999997
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~ 142 (184)
...+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.+. +.|||++|||++++..+||+++
T Consensus 122 ~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~ 200 (211)
T cd03264 122 DRAK-KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVA 200 (211)
T ss_pred HHHh-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEE
Confidence 6554 589999999999999999999999999999999999999999999999865 5799999999999999999999
Q ss_pred EEeCCeEEE
Q psy11928 143 VIENQTIEE 151 (184)
Q Consensus 143 ~l~~g~i~~ 151 (184)
+|++|++..
T Consensus 201 ~l~~g~i~~ 209 (211)
T cd03264 201 VLNKGKLVF 209 (211)
T ss_pred EEECCEEEe
Confidence 999999864
No 57
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.2e-32 Score=218.52 Aligned_cols=154 Identities=29% Similarity=0.319 Sum_probs=123.5
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----------CC----CHH
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----------NL----PYE 52 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----------~~----~~~ 52 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++.... +. ..+
T Consensus 47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (243)
T TIGR02315 47 CINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYN--LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE 124 (243)
T ss_pred HHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCc--ccccccHHHHHhhcccccccchhhhhccccHHHHH
Confidence 58999999999998653 235999999874 333445555543110 00 123
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEe
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS 128 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivs 128 (184)
++.++++.+|+....+ +++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|.+. +.|||+||
T Consensus 125 ~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~t 203 (243)
T TIGR02315 125 RALSALERVGLADKAY-QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203 (243)
T ss_pred HHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 5677899999976554 589999999999999999999999999999999999999999999998754 67999999
Q ss_pred cCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 129 HDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++..+||++++|++|+++. .++.+++
T Consensus 204 H~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 233 (243)
T TIGR02315 204 HQVDLAKKYADRIVGLKAGEIVF-DGAPSEL 233 (243)
T ss_pred CCHHHHHHhcCeEEEEECCEEEe-cCCHHHh
Confidence 99999999999999999999875 5555544
No 58
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.9e-33 Score=206.82 Aligned_cols=148 Identities=30% Similarity=0.298 Sum_probs=120.4
Q ss_pred CcccCcccCCceeEEecC---------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcC----CCHHHHHHHHh
Q psy11928 1 MYAHCDLQPQQGELKKNH---------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFN----LPYEKARKQLG 59 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~----~~~~~~~~~l~ 59 (184)
|+++|+..|++|+|++.+ .+++|||||... ++++..+|+.-.+ ...+ .....+.++|+
T Consensus 54 ~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPl-eL~ge~~~~~~~~A~~lL~ 132 (228)
T COG4181 54 AVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL-ELRGESSADSRAGAKALLE 132 (228)
T ss_pred HHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchh-hhcCCccccHHHHHHHHHH
Confidence 578999999999998642 467999999764 4455444432211 1112 12356788999
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~ 135 (184)
.+|+...... +|.+|||||||||+|||||+..|+||+.||||.+||..+-+.+.+++- +.|.|+|+||||...+.
T Consensus 133 ~vGLg~Rl~H-yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~ 211 (228)
T COG4181 133 AVGLGKRLTH-YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA 211 (228)
T ss_pred HhCccccccc-CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH
Confidence 9999877764 899999999999999999999999999999999999999998888874 45789999999999998
Q ss_pred hhcCeEEEEeCCeEEE
Q psy11928 136 DTECTLWVIENQTIEE 151 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~ 151 (184)
+ |+|++-|.+|++++
T Consensus 212 R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 212 R-CDRQLRLRSGRLVE 226 (228)
T ss_pred h-hhheeeeecceecc
Confidence 6 89999999999853
No 59
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=228.47 Aligned_cols=154 Identities=23% Similarity=0.276 Sum_probs=126.4
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..++.+++... .....+++.++++.+|+++
T Consensus 43 ~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~ 120 (352)
T PRK11144 43 AISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR--LFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEP 120 (352)
T ss_pred HHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcc--cCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCch
Confidence 58999999999997643 246999999874 44555666655422 1122456788999999986
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|++. +.|+|+||||++++..+||++
T Consensus 121 ~~~-~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i 199 (352)
T PRK11144 121 LLD-RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRV 199 (352)
T ss_pred hhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEE
Confidence 654 589999999999999999999999999999999999999999999888653 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|++.. .++.+++
T Consensus 200 ~~l~~G~i~~-~g~~~~i 216 (352)
T PRK11144 200 VVLEQGKVKA-FGPLEEV 216 (352)
T ss_pred EEEeCCEEEE-ecCHHHH
Confidence 9999999975 4555443
No 60
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-32 Score=216.83 Aligned_cols=153 Identities=25% Similarity=0.253 Sum_probs=123.0
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC----C----HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL----P----YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~----~----~~~~~~~l~~~ 61 (184)
+|+|+++|++|+|.+++ +..++|++|++. +....++.+++... ... . .+++.++++.+
T Consensus 47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (239)
T cd03296 47 LIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV 124 (239)
T ss_pred HHhCCCCCCceEEEECCEECCcCCccccceEEEecCCc--ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHc
Confidence 58999999999998754 235999999874 33344555554321 111 1 13456789999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~ 137 (184)
|++...+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||++++..+
T Consensus 125 ~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~ 203 (239)
T cd03296 125 QLDWLAD-RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEV 203 (239)
T ss_pred CChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9976554 589999999999999999999999999999999999999999999998753 67999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~ 158 (184)
||++++|++|+++. .++.++
T Consensus 204 ~d~i~~l~~G~i~~-~~~~~~ 223 (239)
T cd03296 204 ADRVVVMNKGRIEQ-VGTPDE 223 (239)
T ss_pred CCEEEEEECCeEEE-ecCHHH
Confidence 99999999999875 455443
No 61
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-32 Score=214.13 Aligned_cols=147 Identities=25% Similarity=0.287 Sum_probs=121.5
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhc----CC---CHHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLF----NL---PYEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~~---~~~~~~~~l~~~~l~~ 65 (184)
+|+|+.+|++|+|.+++ ++.+||++|++. +....++.+++.... .. ..+++.++++.+|+..
T Consensus 43 ~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 120 (211)
T cd03298 43 LIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN--LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG 120 (211)
T ss_pred HHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccc--cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH
Confidence 58999999999998754 235999999874 344456666653211 11 1245778899999986
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++
T Consensus 121 ~~~-~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i 199 (211)
T cd03298 121 LEK-RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRV 199 (211)
T ss_pred HHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEE
Confidence 554 589999999999999999999999999999999999999999999998753 679999999999999999999
Q ss_pred EEEeCCeEEE
Q psy11928 142 WVIENQTIEE 151 (184)
Q Consensus 142 ~~l~~g~i~~ 151 (184)
++|++|+++.
T Consensus 200 ~~l~~G~i~~ 209 (211)
T cd03298 200 VFLDNGRIAA 209 (211)
T ss_pred EEEECCEEee
Confidence 9999999864
No 62
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.8e-32 Score=237.93 Aligned_cols=174 Identities=28% Similarity=0.501 Sum_probs=139.9
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc---CC--CHHHHHHHHhhCCCCcccccccccCCC
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF---NL--PYEKARKQLGTFGLAGHAHTIKMKDLS 76 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS 76 (184)
+|+|+.+|++|+|.++....|||++|++. .+....++.+++.... .. ...++.++++.+|+.....++++++||
T Consensus 367 ~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 445 (552)
T TIGR03719 367 MITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLS 445 (552)
T ss_pred HHcCCCCCCCeEEEECCceEEEEEeCCcc-ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCC
Confidence 58999999999998865557999999852 2344556666554321 11 123456789999996433345899999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeC-CeEEEecCC
Q psy11928 77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIEN-QTIEEIDGD 155 (184)
Q Consensus 77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~-g~i~~~~~~ 155 (184)
|||||||+||||++.+|+++||||||+|||+.++..+.+.|.++++|||+||||++++..+||++++|++ |++..+.++
T Consensus 446 gGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCC
Confidence 9999999999999999999999999999999999999999999878999999999999999999999987 588777889
Q ss_pred hhHHHHHHHHHhhhhhcCchh
Q psy11928 156 FDDYRKELLEALGEVVNNPSI 176 (184)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~ 176 (184)
+++|.+...+.+.+....++.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~ 546 (552)
T TIGR03719 526 YSEYEEDKKRRLGEDADQPHR 546 (552)
T ss_pred HHHHHHHHHHHHHhhhhhhHh
Confidence 888877766666555554443
No 63
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.1e-32 Score=229.55 Aligned_cols=154 Identities=25% Similarity=0.260 Sum_probs=126.2
Q ss_pred cccCcccCCceeEEecCC-------------------eEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHH
Q psy11928 2 YAHCDLQPQQGELKKNHR-------------------LRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~-------------------~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~ 55 (184)
.|+|+++|++|+|.+++. +.+||+||++. +.+..|+.+++... .+.. ..++.
T Consensus 69 ~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~--l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~ 146 (382)
T TIGR03415 69 AVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA--LMPWLTVEENVAFGLEMQGMPEAERRKRVD 146 (382)
T ss_pred HHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc--CCCCCcHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 589999999999987641 36999999874 44455666554321 1222 24567
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCH
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDE 131 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~ 131 (184)
++++.+|+....+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+||||+
T Consensus 147 e~le~vgL~~~~~-~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl 225 (382)
T TIGR03415 147 EQLELVGLAQWAD-KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL 225 (382)
T ss_pred HHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 8899999986665 58999999999999999999999999999999999999999999998864 368999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++.++||++++|++|+++. .++.+++
T Consensus 226 ~e~~~l~DrI~vl~~G~iv~-~g~~~ei 252 (382)
T TIGR03415 226 DEALKIGNRIAIMEGGRIIQ-HGTPEEI 252 (382)
T ss_pred HHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999976 4555444
No 64
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-32 Score=213.60 Aligned_cols=147 Identities=25% Similarity=0.242 Sum_probs=120.3
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHhcC--C---CHHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN--L---PYEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~--~---~~~~~~~~l~~~ 61 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++..... . ..+++.++++.+
T Consensus 42 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 119 (214)
T cd03297 42 CIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA--LFPHLNVRENLAFGLKRKRNREDRISVDELLDLL 119 (214)
T ss_pred HHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCc--cCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHc
Confidence 58899999999997643 235999999874 3344566555432111 1 124577889999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~ 137 (184)
|+....+ +++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.+. +.|||++|||.+++..+
T Consensus 120 ~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 198 (214)
T cd03297 120 GLDHLLN-RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYL 198 (214)
T ss_pred CCHhHhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHh
Confidence 9976554 589999999999999999999999999999999999999999999988653 67999999999999999
Q ss_pred cCeEEEEeCCeEEE
Q psy11928 138 ECTLWVIENQTIEE 151 (184)
Q Consensus 138 ~~~i~~l~~g~i~~ 151 (184)
||+++++++|+++.
T Consensus 199 ~d~i~~l~~G~i~~ 212 (214)
T cd03297 199 ADRIVVMEDGRLQY 212 (214)
T ss_pred cCEEEEEECCEEEe
Confidence 99999999999864
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-32 Score=219.38 Aligned_cols=154 Identities=22% Similarity=0.312 Sum_probs=124.1
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++.. ..+.. .+++.++++
T Consensus 69 ~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 146 (269)
T cd03294 69 CINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALE 146 (269)
T ss_pred HHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 68999999999998643 136999999874 3334455555432 11111 235678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+.+..+ +++.+||||||||++||||++.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++.
T Consensus 147 ~~~l~~~~~-~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 147 LVGLEGWEH-KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HcCCHhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999986554 589999999999999999999999999999999999999999999988654 579999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||++++|++|++.. .++.+++
T Consensus 226 ~~~d~v~~l~~G~i~~-~g~~~~~ 248 (269)
T cd03294 226 RLGDRIAIMKDGRLVQ-VGTPEEI 248 (269)
T ss_pred HhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999975 4554444
No 66
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.7e-32 Score=214.53 Aligned_cols=147 Identities=22% Similarity=0.330 Sum_probs=121.7
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++.. .++.. .+++.++++.+|+.
T Consensus 50 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 127 (218)
T cd03266 50 MLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTG--LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME 127 (218)
T ss_pred HHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcc--cCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 68999999999998754 246999999873 3344556555432 12222 23567889999997
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
+..+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++
T Consensus 128 ~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i 206 (218)
T cd03266 128 ELLD-RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRV 206 (218)
T ss_pred HHHh-hhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEE
Confidence 6554 589999999999999999999999999999999999999999999999764 679999999999999999999
Q ss_pred EEEeCCeEEE
Q psy11928 142 WVIENQTIEE 151 (184)
Q Consensus 142 ~~l~~g~i~~ 151 (184)
++|++|++..
T Consensus 207 ~~l~~G~i~~ 216 (218)
T cd03266 207 VVLHRGRVVY 216 (218)
T ss_pred EEEECCEEee
Confidence 9999999864
No 67
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-32 Score=222.60 Aligned_cols=156 Identities=26% Similarity=0.309 Sum_probs=123.6
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~ 59 (184)
+|+|+.+|++|+|.+++ ++.+||+||++...+. ..++.+++.. ..+.+. +++.++++
T Consensus 52 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~ 130 (290)
T PRK13634 52 HLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIE 130 (290)
T ss_pred HHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 58999999999998754 1359999998732232 2355555432 122222 34677899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+.....++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.++++++ +.|||+||||++++.
T Consensus 131 ~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~ 210 (290)
T PRK13634 131 LVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAA 210 (290)
T ss_pred HCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 9999643334589999999999999999999999999999999999999999999988653 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||++++|++|+++. .++.+++
T Consensus 211 ~~~drv~~l~~G~i~~-~g~~~~~ 233 (290)
T PRK13634 211 RYADQIVVMHKGTVFL-QGTPREI 233 (290)
T ss_pred HhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999875 5555443
No 68
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.7e-32 Score=214.46 Aligned_cols=144 Identities=30% Similarity=0.410 Sum_probs=117.5
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ ++.++|++|++. +....++.+++.. ..+.. .+++.++++
T Consensus 49 ~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
T cd03255 49 ILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN--LLPDLTALENVELPLLLAGVPKKERRERAEELLE 126 (218)
T ss_pred HHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccc--cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 58999999999998643 236999999874 3344455555432 11221 245678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|++...+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++. +.|||+||||++++.
T Consensus 127 ~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 127 RVGLGDRLN-HYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HcCCchhhh-cChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 999986654 589999999999999999999999999999999999999999999998754 579999999999997
Q ss_pred hhcCeEEEEeCCeE
Q psy11928 136 DTECTLWVIENQTI 149 (184)
Q Consensus 136 ~~~~~i~~l~~g~i 149 (184)
+||++++|++|++
T Consensus 206 -~~d~v~~l~~G~i 218 (218)
T cd03255 206 -YADRIIELRDGKI 218 (218)
T ss_pred -hhcEEEEeeCCcC
Confidence 8999999999864
No 69
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-32 Score=218.33 Aligned_cols=147 Identities=27% Similarity=0.263 Sum_probs=122.8
Q ss_pred cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccccccccC
Q psy11928 2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHTIKMKD 74 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~ 74 (184)
+|+|+++|++|+|.+++ +..++|++|++. +....++.+++.... .....++.++++.+|+....+ +++.+
T Consensus 57 ~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~ 133 (257)
T PRK11247 57 LLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR--LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-EWPAA 133 (257)
T ss_pred HHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc--CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-CChhh
Confidence 68999999999998754 346999999874 444456766654321 112356778999999986654 58999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q psy11928 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIE 150 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~ 150 (184)
||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||++++..+||+++++++|+++
T Consensus 134 LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999988653 689999999999999999999999999986
Q ss_pred E
Q psy11928 151 E 151 (184)
Q Consensus 151 ~ 151 (184)
.
T Consensus 214 ~ 214 (257)
T PRK11247 214 L 214 (257)
T ss_pred e
Confidence 4
No 70
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-32 Score=229.40 Aligned_cols=154 Identities=24% Similarity=0.303 Sum_probs=125.1
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..+||+||++. +.+..|+.+++.. ..+.. .+++.++++
T Consensus 73 ~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~ 150 (400)
T PRK10070 73 LLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--LMPHMTVLDNTAFGMELAGINAEERREKALDALR 150 (400)
T ss_pred HHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 58999999999998753 136999999874 4445566655432 12222 245678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|++...+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++.
T Consensus 151 ~~gL~~~~~-~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~ 229 (400)
T PRK10070 151 QVGLENYAH-SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAM 229 (400)
T ss_pred HcCCChhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence 999987665 589999999999999999999999999999999999999999999988653 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||++++|++|+++. .++.+++
T Consensus 230 ~~~Dri~vL~~G~i~~-~g~~~~l 252 (400)
T PRK10070 230 RIGDRIAIMQNGEVVQ-VGTPDEI 252 (400)
T ss_pred HhCCEEEEEECCEEEe-cCCHHHH
Confidence 9999999999999975 4544443
No 71
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-32 Score=212.39 Aligned_cols=147 Identities=24% Similarity=0.357 Sum_probs=121.5
Q ss_pred cccCcccCCceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCccc
Q psy11928 2 YAHCDLQPQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAGHA 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~ 67 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +....++.+++.. ..+.. .+++.++++.+|++...
T Consensus 45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 122 (210)
T cd03269 45 MILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA 122 (210)
T ss_pred HHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc--CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH
Confidence 68999999999998865 346999999874 3344455555432 12221 24567889999997655
Q ss_pred ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+++. +.|||++|||.+++..+||+++++
T Consensus 123 ~-~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 201 (210)
T cd03269 123 N-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLL 201 (210)
T ss_pred h-CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEE
Confidence 4 589999999999999999999999999999999999999999999998764 579999999999999999999999
Q ss_pred eCCeEEE
Q psy11928 145 ENQTIEE 151 (184)
Q Consensus 145 ~~g~i~~ 151 (184)
++|++..
T Consensus 202 ~~g~i~~ 208 (210)
T cd03269 202 NKGRAVL 208 (210)
T ss_pred eCCEEEe
Confidence 9999864
No 72
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.5e-32 Score=212.78 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=120.1
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ..+.. .+++.++++.+|+..
T Consensus 45 ~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 122 (213)
T cd03301 45 MIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA--LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH 122 (213)
T ss_pred HHhCCCCCCceEEEECCEECCcCCcccceEEEEecChh--hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH
Confidence 68999999999998753 235999999874 3334455554432 11222 234667899999976
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++..+|+++
T Consensus 123 ~~~-~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i 201 (213)
T cd03301 123 LLD-RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI 201 (213)
T ss_pred HHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 554 589999999999999999999999999999999999999999999998653 679999999999999999999
Q ss_pred EEEeCCeEEE
Q psy11928 142 WVIENQTIEE 151 (184)
Q Consensus 142 ~~l~~g~i~~ 151 (184)
+++++|+++.
T Consensus 202 ~~l~~g~~~~ 211 (213)
T cd03301 202 AVMNDGQIQQ 211 (213)
T ss_pred EEEECCEEEe
Confidence 9999999865
No 73
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-32 Score=221.62 Aligned_cols=156 Identities=28% Similarity=0.346 Sum_probs=123.9
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~ 59 (184)
.|+|+++|++|+|.+++ +..+||+||++...+.. .++.+++.. ..+.+. .++.++++
T Consensus 51 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 129 (288)
T PRK13643 51 HLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLE 129 (288)
T ss_pred HHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHH
Confidence 58999999999998753 23599999987322222 356555432 122222 34677899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+|+.....++++.+||||||||++|||+|+.+|+++||||||++||+.++..+.+.++++ +.|||++|||++++..
T Consensus 130 ~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~ 209 (288)
T PRK13643 130 MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVAD 209 (288)
T ss_pred HcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 9999643334689999999999999999999999999999999999999999999988653 6799999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+||++++|++|+++. .++.+++
T Consensus 210 ~~dri~~l~~G~i~~-~g~~~~~ 231 (288)
T PRK13643 210 YADYVYLLEKGHIIS-CGTPSDV 231 (288)
T ss_pred hCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999999975 5665554
No 74
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.6e-32 Score=219.27 Aligned_cols=154 Identities=25% Similarity=0.350 Sum_probs=123.6
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hc-CCCH----HHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF-NLPY----EKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~-~~~~----~~~~~~l~ 59 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +....++.+++.. .. .... .++.++++
T Consensus 52 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~ 129 (269)
T PRK11831 52 LIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGA--LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLE 129 (269)
T ss_pred HHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccc--cCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 68999999999998653 235999999864 3344455555432 11 1122 34567899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+....+ +++++|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++. +.|||+||||++++.
T Consensus 130 ~~gl~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 130 AVGLRGAAK-LMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred HcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 999986554 589999999999999999999999999999999999999999999988754 579999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||++++|++|++.. .++.+++
T Consensus 209 ~~~d~v~~l~~G~i~~-~g~~~~~ 231 (269)
T PRK11831 209 SIADHAYIVADKKIVA-HGSAQAL 231 (269)
T ss_pred HhhCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999875 4555444
No 75
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.4e-32 Score=229.78 Aligned_cols=154 Identities=23% Similarity=0.290 Sum_probs=126.1
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cC-CC---HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FN-LP---YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~-~~---~~~~~~~l~ 59 (184)
.|+|+++|++|+|.+++ ++.+||++|++. +....++.+++... .. .. .+++.++++
T Consensus 48 ~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~--l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le 125 (402)
T PRK09536 48 AINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTS--LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME 125 (402)
T ss_pred HHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCC--CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHH
Confidence 58999999999998754 346999999874 33445665554321 01 11 245778999
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+|+.+..+ +++.+|||||||||+|||||+++|++|||||||+|||+.++..++++|+++ +.|||++|||++++.+
T Consensus 126 ~vgl~~~~~-~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~ 204 (402)
T PRK09536 126 RTGVAQFAD-RPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAAR 204 (402)
T ss_pred HcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 999986654 589999999999999999999999999999999999999999999988764 5799999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+||++++|++|++.. .++.+++
T Consensus 205 ~adrii~l~~G~iv~-~G~~~ev 226 (402)
T PRK09536 205 YCDELVLLADGRVRA-AGPPADV 226 (402)
T ss_pred hCCEEEEEECCEEEE-ecCHHHH
Confidence 999999999999975 5666554
No 76
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-32 Score=223.85 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=121.0
Q ss_pred cccCccc----CCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH----h-c-C---CC---
Q psy11928 2 YAHCDLQ----PQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR----L-F-N---LP--- 50 (184)
Q Consensus 2 ~~~G~~~----p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~-~-~---~~--- 50 (184)
+|+|+++ |++|+|.+++ ++.|+|+||++...+.+..++.+.+.. . . + ..
T Consensus 52 ~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~ 131 (330)
T PRK15093 52 AICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGW 131 (330)
T ss_pred HHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHH
Confidence 5788886 5899998753 136999999975335555665544321 1 1 1 01
Q ss_pred -HHHHHHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcE
Q psy11928 51 -YEKARKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGG 123 (184)
Q Consensus 51 -~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~t 123 (184)
.+++.++++.+|+.+. ..++++.+|||||||||+|||||+.+|++||+||||++||+.++.++.++|++ .+.|
T Consensus 132 ~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~t 211 (330)
T PRK15093 132 RKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTT 211 (330)
T ss_pred HHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCE
Confidence 2457789999999742 22458999999999999999999999999999999999999999999999875 3679
Q ss_pred EEEEecCHHHHHhhcCeEEEEeCCeEEEe
Q psy11928 124 VIIVSHDERLIRDTECTLWVIENQTIEEI 152 (184)
Q Consensus 124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~ 152 (184)
||+||||++++..+||++++|++|++++.
T Consensus 212 ii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 212 ILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999763
No 77
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-32 Score=220.10 Aligned_cols=155 Identities=27% Similarity=0.356 Sum_probs=123.5
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~ 61 (184)
.|+|+++|++|+|.+++ +..+||+||++...+ ...++.+++.. ..+... +++.++++.+
T Consensus 52 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (287)
T PRK13637 52 HLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIV 130 (287)
T ss_pred HHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHc
Confidence 57999999999997653 246999999873112 23455555432 122232 3467889999
Q ss_pred CCC--cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 62 GLA--GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 62 ~l~--~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
|+. ... ++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|+++ +.|||+||||++++.
T Consensus 131 gL~~~~~~-~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~ 209 (287)
T PRK13637 131 GLDYEDYK-DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVA 209 (287)
T ss_pred CCCchhhc-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 996 334 4589999999999999999999999999999999999999999999998653 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||++++|++|++.. .++.+++
T Consensus 210 ~~~drv~~l~~G~i~~-~g~~~~~ 232 (287)
T PRK13637 210 KLADRIIVMNKGKCEL-QGTPREV 232 (287)
T ss_pred HhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999975 5555444
No 78
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-32 Score=213.91 Aligned_cols=153 Identities=26% Similarity=0.388 Sum_probs=123.7
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ..+.. ...+.++++.
T Consensus 50 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 127 (233)
T cd03258 50 CINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFN--LLSSRTVFENVALPLEIAGVPKAEIEERVLELLEL 127 (233)
T ss_pred HHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 58999999999998653 245999999874 3344555555432 11222 2356788999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~ 136 (184)
+++++..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++..
T Consensus 128 ~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~ 206 (233)
T cd03258 128 VGLEDKAD-AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKR 206 (233)
T ss_pred CCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99986554 589999999999999999999999999999999999999999999998753 6799999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
+||++++|++|+++. .++.++
T Consensus 207 ~~d~i~~l~~G~i~~-~~~~~~ 227 (233)
T cd03258 207 ICDRVAVMEKGEVVE-EGTVEE 227 (233)
T ss_pred hCCEEEEEECCEEEE-ecCHHH
Confidence 999999999999975 444433
No 79
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.8e-32 Score=216.59 Aligned_cols=155 Identities=26% Similarity=0.389 Sum_probs=124.7
Q ss_pred cccCcccCCceeEEecC------------------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC---
Q psy11928 2 YAHCDLQPQQGELKKNH------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP--- 50 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~--- 50 (184)
+|+|+++|++|+|.+++ ++.++|+||++. +....++.+++.. .....
T Consensus 50 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~sv~enl~~~~~~~~~~~~~~ 127 (257)
T PRK10619 50 CINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKQE 127 (257)
T ss_pred HHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcc--cCCCCcHHHHHHHHHHHhCCCCHHH
Confidence 68999999999997653 235999999874 3344555555431 11222
Q ss_pred -HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928 51 -YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVII 126 (184)
Q Consensus 51 -~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii 126 (184)
..++.++++.+|+.....++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++. +.|||+
T Consensus 128 ~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii 207 (257)
T PRK10619 128 ARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV 207 (257)
T ss_pred HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 2356788999999765424579999999999999999999999999999999999999999999988754 689999
Q ss_pred EecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||||++++..+||+++++++|+++. .++.+++
T Consensus 208 vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 239 (257)
T PRK10619 208 VTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQL 239 (257)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 9999999999999999999999975 5555544
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-32 Score=220.47 Aligned_cols=154 Identities=25% Similarity=0.294 Sum_probs=123.7
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l 63 (184)
.|+|+++|++|+|.+++ +..+||+||++...+ ...++.+++.. ..+.. .+++.++++.+|+
T Consensus 50 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L 128 (274)
T PRK13647 50 HLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM 128 (274)
T ss_pred HHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 57899999999998764 246999999863112 23455555432 11222 2356788999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
.+..+ +++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+. +.|||++|||++++.++||+
T Consensus 129 ~~~~~-~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~ 207 (274)
T PRK13647 129 WDFRD-KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQ 207 (274)
T ss_pred HHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 76654 589999999999999999999999999999999999999999999999754 67999999999999999999
Q ss_pred EEEEeCCeEEEecCChhH
Q psy11928 141 LWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 141 i~~l~~g~i~~~~~~~~~ 158 (184)
+++|++|++++ .++.+.
T Consensus 208 i~~l~~G~i~~-~g~~~~ 224 (274)
T PRK13647 208 VIVLKEGRVLA-EGDKSL 224 (274)
T ss_pred EEEEECCEEEE-ECCHHH
Confidence 99999999875 444443
No 81
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.1e-32 Score=240.60 Aligned_cols=159 Identities=31% Similarity=0.542 Sum_probs=134.1
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc-CC--C--HHHHHHHHhhCCCCcccccccccCCC
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NL--P--YEKARKQLGTFGLAGHAHTIKMKDLS 76 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~--~--~~~~~~~l~~~~l~~~~~~~~~~~LS 76 (184)
+|+|+++|++|+|.++....|||++|++. .+....++.+++.... .. . ..++.++++.|++.....++++++||
T Consensus 364 ~l~G~~~p~~G~i~~~~~~~i~y~~q~~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 442 (635)
T PRK11147 364 LMLGQLQADSGRIHCGTKLEVAYFDQHRA-ELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALS 442 (635)
T ss_pred HHhCCCCCCCcEEEECCCcEEEEEeCccc-ccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCC
Confidence 58999999999998855568999999752 3455567766654321 11 1 34577889999996433346899999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEe-CCeEEEecCC
Q psy11928 77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIE-NQTIEEIDGD 155 (184)
Q Consensus 77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~-~g~i~~~~~~ 155 (184)
|||||||+||++++.+|++|||||||||||+.++..+.+.+.++++|||+||||++++..+|+++++++ +|++..+.|+
T Consensus 443 gGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 443 GGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCC
Confidence 999999999999999999999999999999999999999999998899999999999999999999998 8999999999
Q ss_pred hhHHHH
Q psy11928 156 FDDYRK 161 (184)
Q Consensus 156 ~~~~~~ 161 (184)
+++|.+
T Consensus 523 y~~y~~ 528 (635)
T PRK11147 523 YHDARQ 528 (635)
T ss_pred HHHHHH
Confidence 999854
No 82
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2e-32 Score=213.48 Aligned_cols=144 Identities=26% Similarity=0.379 Sum_probs=118.0
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ +..++|++|++. +....++.+++... .+.. .+++.++++.
T Consensus 47 ~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 124 (214)
T TIGR02673 47 LLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFR--LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQ 124 (214)
T ss_pred HHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChh--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 68999999999997653 236999999874 33345555554321 1221 2456788999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 137 (184)
+++....+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++ +.|||+||||++++..+
T Consensus 125 ~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 203 (214)
T TIGR02673 125 VGLEHKAD-AFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRV 203 (214)
T ss_pred cCChhhhh-CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 99986554 589999999999999999999999999999999999999999999999764 67999999999999999
Q ss_pred cCeEEEEeCCe
Q psy11928 138 ECTLWVIENQT 148 (184)
Q Consensus 138 ~~~i~~l~~g~ 148 (184)
||++++|++|+
T Consensus 204 ~d~i~~l~~G~ 214 (214)
T TIGR02673 204 AHRVIILDDGR 214 (214)
T ss_pred cCEEEEecCCC
Confidence 99999999884
No 83
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.9e-32 Score=227.60 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=124.5
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC--HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP--YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~--~~~~~~~l~~~ 61 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..++.+++... .... ..++.++++.+
T Consensus 42 ~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~ 119 (354)
T TIGR02142 42 LIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR--LFPHLSVRGNLRYGMKRARPSERRISFERVIELL 119 (354)
T ss_pred HHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCc--cCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHc
Confidence 58999999999997643 245999999874 34445665554321 1111 23577899999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~ 137 (184)
|+....+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++. +.|||+||||++++..+
T Consensus 120 gL~~~~~-~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~ 198 (354)
T TIGR02142 120 GIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRL 198 (354)
T ss_pred CChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 9986655 589999999999999999999999999999999999999999999988653 67999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|++.. .++.+++
T Consensus 199 ~d~i~~l~~G~i~~-~g~~~~~ 219 (354)
T TIGR02142 199 ADRVVVLEDGRVAA-AGPIAEV 219 (354)
T ss_pred CCEEEEEeCCEEEE-ECCHHHH
Confidence 99999999999975 4555443
No 84
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=9.5e-32 Score=241.15 Aligned_cols=161 Identities=37% Similarity=0.721 Sum_probs=133.4
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH-hcCCCHHHHHHHHhhCCCCcccccccccCCChhHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR-LFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK 80 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k 80 (184)
+|+|+++|++|+|.++.+.++||++|++...++...+....+.. ......+++.++++.+|+......+++.+||||||
T Consensus 554 ~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqk 633 (718)
T PLN03073 554 LISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 633 (718)
T ss_pred HHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHH
Confidence 58999999999999887788999999864334444443222222 12334567888999999975333468999999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
|||+|||+++.+|++|||||||||||+.++..+.+.+.++++|||+||||++++..+|++++++++|+++.+.|++++|.
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999999999999999999999999998877799999999999999999999999999976788887775
Q ss_pred HH
Q psy11928 161 KE 162 (184)
Q Consensus 161 ~~ 162 (184)
+.
T Consensus 714 ~~ 715 (718)
T PLN03073 714 KT 715 (718)
T ss_pred HH
Confidence 54
No 85
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8e-32 Score=213.84 Aligned_cols=154 Identities=25% Similarity=0.344 Sum_probs=124.7
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----------CC----CHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----------NL----PYEKA 54 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----------~~----~~~~~ 54 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.... .. ...++
T Consensus 47 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (242)
T TIGR03411 47 VITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT--VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRI 124 (242)
T ss_pred HHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc--cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHH
Confidence 68999999999998753 135999999864 344456555543210 00 12356
Q ss_pred HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHH
Q psy11928 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDER 132 (184)
Q Consensus 55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~ 132 (184)
.++++.+|+....+ +++++|||||+|||+||||++.+|+++||||||+|||+.++..+.+.|+++ +.|||++||+++
T Consensus 125 ~~~l~~~~l~~~~~-~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 203 (242)
T TIGR03411 125 EEVLETIGLADEAD-RLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME 203 (242)
T ss_pred HHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 78899999986554 589999999999999999999999999999999999999999999999865 479999999999
Q ss_pred HHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 133 LIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++..+||+++++++|++.. .++.+++
T Consensus 204 ~~~~~~d~i~~l~~g~~~~-~~~~~~~ 229 (242)
T TIGR03411 204 FVRSIADKVTVLHQGSVLA-EGSLDQV 229 (242)
T ss_pred HHHHhCCEEEEEECCeEEe-eCCHHHH
Confidence 9999999999999999875 5555554
No 86
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-32 Score=212.38 Aligned_cols=156 Identities=24% Similarity=0.260 Sum_probs=126.4
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhc--C--CC---HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--N--LP---YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~--~~---~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.... . .. .+++.++++.+|++.
T Consensus 44 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 121 (232)
T PRK10771 44 LIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN--LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED 121 (232)
T ss_pred HHhCCCCCCCceEEECCeecCcCChhhccEEEEecccc--cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH
Confidence 58999999999998764 246999999874 444456666553211 1 11 245778899999976
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++..+||++
T Consensus 122 ~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 200 (232)
T PRK10771 122 LLA-RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS 200 (232)
T ss_pred HHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 554 589999999999999999999999999999999999999999999988653 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~~ 161 (184)
+++++|++.. .++.+++..
T Consensus 201 ~~l~~g~i~~-~g~~~~~~~ 219 (232)
T PRK10771 201 LVVADGRIAW-DGPTDELLS 219 (232)
T ss_pred EEEECCEEEE-eCCHHHHHh
Confidence 9999999974 566655543
No 87
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-32 Score=235.12 Aligned_cols=157 Identities=29% Similarity=0.437 Sum_probs=128.2
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh--------------c--------------------
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL--------------F-------------------- 47 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~--------------~-------------------- 47 (184)
+|+|+++|++|+|.+++...+||++|++. +....++.+++... .
T Consensus 46 ~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (530)
T PRK15064 46 ILGGDLEPSAGNVSLDPNERLGKLRQDQF--AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKF 123 (530)
T ss_pred HHhCCCCCCCceEEecCCCEEEEEeccCC--cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 68999999999999887778999999863 22333443332110 0
Q ss_pred ----CC-CHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCc
Q psy11928 48 ----NL-PYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG 122 (184)
Q Consensus 48 ----~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 122 (184)
+. ...++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 203 (530)
T PRK15064 124 AEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS 203 (530)
T ss_pred HhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC
Confidence 00 1235667899999975443457899999999999999999999999999999999999999999999998889
Q ss_pred EEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 123 GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 123 tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
|||+||||++++..+||++++|++|++..+.++++++.
T Consensus 204 tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 204 TMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred eEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999999999999999999865678777664
No 88
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=7.6e-32 Score=214.91 Aligned_cols=154 Identities=30% Similarity=0.423 Sum_probs=123.0
Q ss_pred cccCcccCCceeEEecC-------------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHH
Q psy11928 2 YAHCDLQPQQGELKKNH-------------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKA 54 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~ 54 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ..... .+++
T Consensus 48 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 125 (250)
T PRK11264 48 CINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN--LFPHRTVLENIIEGPVIVKGEPKEEATARA 125 (250)
T ss_pred HHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 58999999999997542 235999999874 3334455555432 11222 2346
Q ss_pred HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE 131 (184)
Q Consensus 55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~ 131 (184)
.++++.+|+....+ +++++|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||+
T Consensus 126 ~~~l~~~gl~~~~~-~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 126 RELLAKVGLAGKET-SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred HHHHHHcCCcchhh-CChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 77899999976554 589999999999999999999999999999999999999999999988653 67999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++..+||++++|++|+++. .++.+++
T Consensus 205 ~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 231 (250)
T PRK11264 205 SFARDVADRAIFMDQGRIVE-QGPAKAL 231 (250)
T ss_pred HHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999875 4555443
No 89
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=7.9e-32 Score=217.10 Aligned_cols=157 Identities=23% Similarity=0.265 Sum_probs=123.3
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~~~~ 62 (184)
+|+|+++|++|+|.+++ +..++|+||++...+....++.+++.. ..... .+++.++++.+|
T Consensus 58 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (267)
T PRK15112 58 MLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVG 137 (267)
T ss_pred HHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC
Confidence 58999999999998753 235999999864223444455444321 11111 234678899999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhc
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~ 138 (184)
+.....++++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.|.+. +.|||+|||+++++..+|
T Consensus 138 l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~ 217 (267)
T PRK15112 138 LLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHIS 217 (267)
T ss_pred CChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhc
Confidence 9533334578999999999999999999999999999999999999999999988753 679999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++|++|++.. .++.+++
T Consensus 218 d~i~~l~~G~i~~-~~~~~~~ 237 (267)
T PRK15112 218 DQVLVMHQGEVVE-RGSTADV 237 (267)
T ss_pred CEEEEEECCEEEe-cCCHHHH
Confidence 9999999999964 5555444
No 90
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=8.5e-32 Score=212.35 Aligned_cols=154 Identities=23% Similarity=0.345 Sum_probs=123.5
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~ 62 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ..... ..++.++++.++
T Consensus 45 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (232)
T cd03218 45 MIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS--IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFH 122 (232)
T ss_pred HHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc--ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 58999999999998653 135999999874 3344555554432 11221 234667899999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~ 139 (184)
++...+ +++.+||||||||++||||++.+|++|||||||+|||+.++..+.+.+++. +.|||++|||++++..+||
T Consensus 123 l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 123 ITHLRK-SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD 201 (232)
T ss_pred Chhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 986554 589999999999999999999999999999999999999999999988653 6799999999999999999
Q ss_pred eEEEEeCCeEEEecCChhHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++|++|++.. .++.+++
T Consensus 202 ~i~~l~~G~i~~-~~~~~~~ 220 (232)
T cd03218 202 RAYIIYEGKVLA-EGTPEEI 220 (232)
T ss_pred EEEEEECCeEEE-EeCHHHh
Confidence 999999999864 4555443
No 91
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-32 Score=219.51 Aligned_cols=154 Identities=25% Similarity=0.334 Sum_probs=122.7
Q ss_pred cccCcccCCceeEEecCC---------------eEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNHR---------------LRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~---------------~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++. ..+||+||++...+. ..++.+++.. ..... .+++.++++
T Consensus 52 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 130 (287)
T PRK13641 52 HFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLK 130 (287)
T ss_pred HHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 589999999999987541 359999998631122 2455555432 12222 234678899
Q ss_pred hCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928 60 TFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~ 135 (184)
.+|++ ...+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++.
T Consensus 131 ~~gL~~~~~~-~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~ 209 (287)
T PRK13641 131 KVGLSEDLIS-KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVA 209 (287)
T ss_pred HcCCChhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99996 4444 589999999999999999999999999999999999999999999998764 579999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
.+||++++|++|+++. .++.++
T Consensus 210 ~~~d~v~~l~~G~i~~-~g~~~~ 231 (287)
T PRK13641 210 EYADDVLVLEHGKLIK-HASPKE 231 (287)
T ss_pred HhCCEEEEEECCEEEE-eCCHHH
Confidence 9999999999999875 455444
No 92
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.9e-32 Score=209.69 Aligned_cols=148 Identities=23% Similarity=0.284 Sum_probs=121.3
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh--c--CC---CHHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL--F--NL---PYEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~--~~---~~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++... . .. ...++.++++.+|+.+
T Consensus 43 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 120 (213)
T TIGR01277 43 LIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD 120 (213)
T ss_pred HHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH
Confidence 68999999999998754 245999999974 33445665554321 1 11 1245677899999976
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||+|||+.+++..+||++
T Consensus 121 ~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v 199 (213)
T TIGR01277 121 YLD-RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQI 199 (213)
T ss_pred Hhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeE
Confidence 554 589999999999999999999999999999999999999999999988653 579999999999999999999
Q ss_pred EEEeCCeEEEe
Q psy11928 142 WVIENQTIEEI 152 (184)
Q Consensus 142 ~~l~~g~i~~~ 152 (184)
++|++|++.+.
T Consensus 200 ~~l~~g~i~~~ 210 (213)
T TIGR01277 200 AVVSQGKIKVV 210 (213)
T ss_pred EEEECCeEEEe
Confidence 99999998753
No 93
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-32 Score=220.54 Aligned_cols=155 Identities=24% Similarity=0.342 Sum_probs=122.7
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
.|+|+++|++|+|.+++ ++.|||+||++...+.. .++.+++.. ..+.+ .+++.++++
T Consensus 52 ~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~ 130 (286)
T PRK13646 52 NINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLM 130 (286)
T ss_pred HHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHH
Confidence 58999999999998653 23699999986322222 355555432 11222 234678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+.....++++.+|||||||||+|||||+.+|+++||||||+|||+.++.++.++++++ +.|||+||||++++.
T Consensus 131 ~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~ 210 (286)
T PRK13646 131 DLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVA 210 (286)
T ss_pred HcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 9999633333589999999999999999999999999999999999999999999998753 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
.+||++++|++|+++. .++..+
T Consensus 211 ~~~dri~~l~~G~i~~-~g~~~~ 232 (286)
T PRK13646 211 RYADEVIVMKEGSIVS-QTSPKE 232 (286)
T ss_pred HhCCEEEEEECCEEEE-ECCHHH
Confidence 9999999999999975 455544
No 94
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.3e-32 Score=211.19 Aligned_cols=145 Identities=30% Similarity=0.398 Sum_probs=116.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l 63 (184)
+|+|+++|++|+|.+++ +..++|+||++.. .....++.+++... .+.. ..++.++++.+++
T Consensus 46 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 124 (211)
T cd03225 46 LLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDD-QFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL 124 (211)
T ss_pred HHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhh-hcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc
Confidence 58999999999998754 2469999998631 11234555544321 1121 2346778999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
....+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||+
T Consensus 125 ~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~ 203 (211)
T cd03225 125 EGLRD-RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADR 203 (211)
T ss_pred Hhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 76554 589999999999999999999999999999999999999999999999754 57999999999999999999
Q ss_pred EEEEeCCe
Q psy11928 141 LWVIENQT 148 (184)
Q Consensus 141 i~~l~~g~ 148 (184)
+++|++|+
T Consensus 204 i~~l~~G~ 211 (211)
T cd03225 204 VIVLEDGK 211 (211)
T ss_pred EEEEeCCC
Confidence 99999884
No 95
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-31 Score=234.26 Aligned_cols=156 Identities=26% Similarity=0.425 Sum_probs=128.0
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh-----------------cCCC--------------
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL-----------------FNLP-------------- 50 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~-----------------~~~~-------------- 50 (184)
+|+|+++|++|+|.++....+||+||++. +....|+.+++... ....
T Consensus 52 ~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (556)
T PRK11819 52 IMAGVDKEFEGEARPAPGIKVGYLPQEPQ--LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGEL 129 (556)
T ss_pred HHhCCCCCCCceEEecCCCEEEEEecCCC--CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 68999999999999877778999999874 22333444332110 0000
Q ss_pred ------------HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q psy11928 51 ------------YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN 118 (184)
Q Consensus 51 ------------~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~ 118 (184)
..++.++++.+|+.. . ++++++|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~ 207 (556)
T PRK11819 130 QEIIDAADAWDLDSQLEIAMDALRCPP-W-DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH 207 (556)
T ss_pred HHHHHhcCccchHHHHHHHHHhCCCCc-c-cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHH
Confidence 234667889999963 4 45899999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 119 EYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 119 ~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
+++.|||+||||++++..+||++++|++|+++.+.++++.|.+
T Consensus 208 ~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 208 DYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred hCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence 9888999999999999999999999999998767888776643
No 96
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.98 E-value=9.4e-32 Score=214.94 Aligned_cols=153 Identities=29% Similarity=0.371 Sum_probs=124.0
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCcc--CCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAE--ETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQ 79 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 79 (184)
+|+|+++|++|+|.++.+..++|+||++. +... .++.+++....+...+++.++++.+|+.+..+ +++.+|||||
T Consensus 49 ~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq 125 (251)
T PRK09544 49 VVLGLVAPDEGVIKRNGKLRIGYVPQKLY--LDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-APMQKLSGGE 125 (251)
T ss_pred HHhCCCCCCceEEEECCccCEEEeccccc--cccccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-CChhhCCHHH
Confidence 58999999999999987778999999874 2222 34444443222233456788899999986554 5899999999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCC
Q psy11928 80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGD 155 (184)
Q Consensus 80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~ 155 (184)
|||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++..+|+++++|++ +++. .++
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~-~g~ 203 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC-SGT 203 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe-eCC
Confidence 99999999999999999999999999999999999988643 67999999999999999999999965 5654 455
Q ss_pred hhHH
Q psy11928 156 FDDY 159 (184)
Q Consensus 156 ~~~~ 159 (184)
.+++
T Consensus 204 ~~~~ 207 (251)
T PRK09544 204 PEVV 207 (251)
T ss_pred HHHH
Confidence 5444
No 97
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.98 E-value=4.7e-32 Score=213.66 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=123.1
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC-HHHHHHHHhhCC-CC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP-YEKARKQLGTFG-LA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~-~~~~~~~l~~~~-l~ 64 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++... .+.. .+...++++.++ +.
T Consensus 45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~ 122 (230)
T TIGR03410 45 TLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLK 122 (230)
T ss_pred HHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCc--ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHH
Confidence 58999999999998653 235999999874 34445666554321 1222 233466777776 45
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~ 140 (184)
...+ +++.+||||||||++||||++.+|+++||||||+|||+.++.++.+.|.+. +.|||++||+++++..+||+
T Consensus 123 ~~~~-~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 201 (230)
T TIGR03410 123 EMLG-RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADR 201 (230)
T ss_pred HHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCE
Confidence 4444 589999999999999999999999999999999999999999999998753 67999999999999999999
Q ss_pred EEEEeCCeEEEecCChhHHHH
Q psy11928 141 LWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 141 i~~l~~g~i~~~~~~~~~~~~ 161 (184)
++++++|+++. .++.+++..
T Consensus 202 v~~l~~g~i~~-~~~~~~~~~ 221 (230)
T TIGR03410 202 YYVMERGRVVA-SGAGDELDE 221 (230)
T ss_pred EEEEECCEEEE-ECCHHHcCh
Confidence 99999999975 555555533
No 98
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=9.8e-32 Score=213.18 Aligned_cols=154 Identities=28% Similarity=0.316 Sum_probs=124.1
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh----cCCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL----FNLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~----~~~~----~~~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ ++.++|++|++. +.+..++.+++... .+.. .+++.++++.
T Consensus 46 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (240)
T PRK09493 46 CINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFY--LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAK 123 (240)
T ss_pred HHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence 58999999999998653 235999999864 33444555544321 1221 2346778999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 137 (184)
+|++...+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.++|.++ +.|||++|||++++..+
T Consensus 124 ~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 202 (240)
T PRK09493 124 VGLAERAH-HYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV 202 (240)
T ss_pred cCChHHHh-cChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 99976554 589999999999999999999999999999999999999999999998654 67999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|+++. .++.+++
T Consensus 203 ~d~i~~l~~G~i~~-~g~~~~~ 223 (240)
T PRK09493 203 ASRLIFIDKGRIAE-DGDPQVL 223 (240)
T ss_pred CCEEEEEECCEEEe-eCCHHHH
Confidence 99999999999975 5555544
No 99
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.98 E-value=1.1e-31 Score=222.23 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=120.6
Q ss_pred cccCcccCC---ceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHH----HhcCCCH----HHHH
Q psy11928 2 YAHCDLQPQ---QGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQ----RLFNLPY----EKAR 55 (184)
Q Consensus 2 ~~~G~~~p~---~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~----~~~~~~~----~~~~ 55 (184)
.|+|+++|+ +|+|.+++ ++.|+|+||++...+.+..++.+.+. ...+... +++.
T Consensus 61 ~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~ 140 (330)
T PRK09473 61 ALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESV 140 (330)
T ss_pred HHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 578999996 99998754 13699999997433445555544332 1112222 3567
Q ss_pred HHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEec
Q psy11928 56 KQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsH 129 (184)
++++.+|+.+. ..++++++|||||+|||+|||||+.+|++||+||||++||+.++..+.++|.+. +.|+|+|||
T Consensus 141 ~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH 220 (330)
T PRK09473 141 RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220 (330)
T ss_pred HHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 78999999642 123589999999999999999999999999999999999999999999988643 679999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEe
Q psy11928 130 DERLIRDTECTLWVIENQTIEEI 152 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~ 152 (184)
|+..+..+||++++|++|++++.
T Consensus 221 dl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 221 DLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred CHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999873
No 100
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.1e-31 Score=221.91 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=119.6
Q ss_pred cccCccc----CCceeEEecCC---------------eEEEEEecCCCCCCCccCCHHHH----HHHhcCCC----HHHH
Q psy11928 2 YAHCDLQ----PQQGELKKNHR---------------LRIGRFDQHSGEHLTAEETPAEY----LQRLFNLP----YEKA 54 (184)
Q Consensus 2 ~~~G~~~----p~~G~i~~~~~---------------~~ig~v~q~~~~~l~~~~~~~~~----~~~~~~~~----~~~~ 54 (184)
.|+|+++ |++|+|.+++. +.|+|+||++...+.+..++.+. +....+.. .+++
T Consensus 52 ~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~ 131 (326)
T PRK11022 52 AIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRA 131 (326)
T ss_pred HHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5789887 48999987531 25999999974234444554332 22211222 2457
Q ss_pred HHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEe
Q psy11928 55 RKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS 128 (184)
Q Consensus 55 ~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivs 128 (184)
.++++.+|+.+. ..++++++|||||+|||+|||||+.+|++||+||||++||+.++..++++|+++ +.|+|+||
T Consensus 132 ~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iT 211 (326)
T PRK11022 132 IDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLIT 211 (326)
T ss_pred HHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 788999999642 224589999999999999999999999999999999999999999999988653 67999999
Q ss_pred cCHHHHHhhcCeEEEEeCCeEEEe
Q psy11928 129 HDERLIRDTECTLWVIENQTIEEI 152 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~g~i~~~ 152 (184)
||++.+..+||++++|.+|++++.
T Consensus 212 Hdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 212 HDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999874
No 101
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.98 E-value=7.5e-32 Score=211.28 Aligned_cols=152 Identities=21% Similarity=0.305 Sum_probs=120.7
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC--CHHHHHHHHhhC-CC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL--PYEKARKQLGTF-GL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~-~l 63 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++... ... ...++.++++.+ ++
T Consensus 45 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l 122 (222)
T cd03224 45 TIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRR--IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL 122 (222)
T ss_pred HHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccc--cCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh
Confidence 58999999999998653 235999999874 33445665554321 111 123456677777 46
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
....+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++..+||+
T Consensus 123 ~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (222)
T cd03224 123 KERRK-QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADR 201 (222)
T ss_pred hhhhh-CchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccE
Confidence 65454 589999999999999999999999999999999999999999999999764 57999999999999999999
Q ss_pred EEEEeCCeEEEecCChh
Q psy11928 141 LWVIENQTIEEIDGDFD 157 (184)
Q Consensus 141 i~~l~~g~i~~~~~~~~ 157 (184)
+++|++|++.. .++.+
T Consensus 202 i~~l~~G~i~~-~~~~~ 217 (222)
T cd03224 202 AYVLERGRVVL-EGTAA 217 (222)
T ss_pred EEEeeCCeEEE-eCCHH
Confidence 99999999875 44443
No 102
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=7.9e-32 Score=212.90 Aligned_cols=146 Identities=25% Similarity=0.364 Sum_probs=118.6
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ ++.++|+||++. +....++.+++.. ..+.. .+++.++++
T Consensus 54 ~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 131 (233)
T PRK11629 54 LLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHH--LLPDFTALENVAMPLLIGKKKPAEINSRALEMLA 131 (233)
T ss_pred HHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 58999999999998753 145999999864 3334456555432 11211 235678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+++..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||++++.
T Consensus 132 ~~gl~~~~~-~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 132 AVGLEHRAN-HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999986554 589999999999999999999999999999999999999999999998753 679999999999998
Q ss_pred hhcCeEEEEeCCeEEE
Q psy11928 136 DTECTLWVIENQTIEE 151 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~ 151 (184)
.. +++++|++|+++.
T Consensus 211 ~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 211 RM-SRQLEMRDGRLTA 225 (233)
T ss_pred hh-CEEEEEECCEEEE
Confidence 75 6899999999864
No 103
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.3e-31 Score=212.87 Aligned_cols=154 Identities=27% Similarity=0.372 Sum_probs=123.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l 63 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +....++.+++.. ..+.. .+++.++++.+|+
T Consensus 46 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l 123 (242)
T cd03295 46 MINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGL 123 (242)
T ss_pred HHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCcc--ccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 58999999999998653 246999999874 3344555555432 11222 2356788999999
Q ss_pred Cc--ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928 64 AG--HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 64 ~~--~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~ 137 (184)
.. ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++||+.+++..+
T Consensus 124 ~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~ 202 (242)
T cd03295 124 DPAEFAD-RYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRL 202 (242)
T ss_pred CcHHHHh-cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence 75 444 589999999999999999999999999999999999999999999988753 67999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|+++. .++.+.+
T Consensus 203 ~d~i~~l~~G~i~~-~~~~~~~ 223 (242)
T cd03295 203 ADRIAIMKNGEIVQ-VGTPDEI 223 (242)
T ss_pred CCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999975 4554443
No 104
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.98 E-value=1.9e-31 Score=209.40 Aligned_cols=151 Identities=28% Similarity=0.368 Sum_probs=124.4
Q ss_pred cccCcccCCceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCHHHHHHHHhhCCCCccccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPYEKARKQLGTFGLAGHAHTIK 71 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~ 71 (184)
+|+|+++|++|+|.+++ .+.++|+||++. +....++.+++.. ..+....++.++++.+|+++..+ ++
T Consensus 45 ~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~ 121 (223)
T TIGR03740 45 MITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP--LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-KK 121 (223)
T ss_pred HHhCCCCCCceEEEECCEeccccccccEEEEcCCCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-hh
Confidence 58999999999998754 246999999864 3334455555432 22334567788999999986654 58
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
+.+|||||+||++||||++.+|+++||||||+|||+.+++.+.+.|.++ +.|||++|||++++..+||+++++++|+
T Consensus 122 ~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 201 (223)
T TIGR03740 122 AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGV 201 (223)
T ss_pred HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999764 5799999999999999999999999999
Q ss_pred EEEecCCh
Q psy11928 149 IEEIDGDF 156 (184)
Q Consensus 149 i~~~~~~~ 156 (184)
+.. .++.
T Consensus 202 i~~-~~~~ 208 (223)
T TIGR03740 202 LGY-QGKI 208 (223)
T ss_pred EEE-ecCh
Confidence 875 3443
No 105
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.3e-31 Score=212.69 Aligned_cols=148 Identities=24% Similarity=0.304 Sum_probs=120.7
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHA 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~ 67 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +.. .++.+++... ......++.++++.+|+....
T Consensus 48 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~ 124 (241)
T PRK14250 48 LINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY 124 (241)
T ss_pred HHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH
Confidence 68999999999998754 246999999874 222 3565554321 111234677889999996333
Q ss_pred ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEE
Q psy11928 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
.++++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++
T Consensus 125 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~ 204 (241)
T PRK14250 125 ATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAF 204 (241)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEE
Confidence 34589999999999999999999999999999999999999999999988653 68999999999999999999999
Q ss_pred EeCCeEEEe
Q psy11928 144 IENQTIEEI 152 (184)
Q Consensus 144 l~~g~i~~~ 152 (184)
|++|+++..
T Consensus 205 l~~G~i~~~ 213 (241)
T PRK14250 205 LNKGILVEY 213 (241)
T ss_pred EeCCEEEEe
Confidence 999999753
No 106
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=9.7e-32 Score=221.60 Aligned_cols=155 Identities=22% Similarity=0.280 Sum_probs=123.4
Q ss_pred cccCcccCCceeEEecC---------------------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH
Q psy11928 2 YAHCDLQPQQGELKKNH---------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY 51 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~ 51 (184)
+|+|+++|++|+|.+++ ++.+||+||++...+.. .++.+++.. ..+.+.
T Consensus 71 ~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~ 149 (320)
T PRK13631 71 HFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKK 149 (320)
T ss_pred HHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCH
Confidence 58999999999998652 23599999987322322 366655432 112222
Q ss_pred ----HHHHHHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcE
Q psy11928 52 ----EKARKQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGG 123 (184)
Q Consensus 52 ----~~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~t 123 (184)
+++.++++.+|+. ...+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|.+. +.|
T Consensus 150 ~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~T 228 (320)
T PRK13631 150 SEAKKLAKFYLNKMGLDDSYLE-RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKT 228 (320)
T ss_pred HHHHHHHHHHHHHcCCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCE
Confidence 3467789999996 3444 589999999999999999999999999999999999999999999998653 679
Q ss_pred EEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 124 VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 229 iiivtHd~~~~~~~adri~vl~~G~i~~-~g~~~~~ 263 (320)
T PRK13631 229 VFVITHTMEHVLEVADEVIVMDKGKILK-TGTPYEI 263 (320)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999975 5555443
No 107
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.98 E-value=8.3e-32 Score=230.93 Aligned_cols=154 Identities=23% Similarity=0.250 Sum_probs=125.1
Q ss_pred cccCcccCC----ceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHH----HhcCCC----HHHH
Q psy11928 2 YAHCDLQPQ----QGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQ----RLFNLP----YEKA 54 (184)
Q Consensus 2 ~~~G~~~p~----~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~----~~~~~~----~~~~ 54 (184)
.|.|++++. +|+|.+++ ...|+++||+|...+.+..++..-+. ...+.. .+++
T Consensus 54 ~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a 133 (539)
T COG1123 54 ALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRA 133 (539)
T ss_pred HHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHH
Confidence 356788776 79997653 35799999998655666666543332 122121 3457
Q ss_pred HHHHhhCCCCcccc-cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11928 55 RKQLGTFGLAGHAH-TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSH 129 (184)
Q Consensus 55 ~~~l~~~~l~~~~~-~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsH 129 (184)
.++|+.+|+.+... +++|++|||||||||.||+||+.+|++||+||||.+||+..+.+++++|++ .+.++|+|||
T Consensus 134 ~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITH 213 (539)
T COG1123 134 VELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213 (539)
T ss_pred HHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcC
Confidence 78999999986554 258999999999999999999999999999999999999999999999975 4789999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCCh
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDF 156 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~ 156 (184)
|++.+.++|||+++|++|++++ .|+.
T Consensus 214 Dl~Vva~~aDrv~Vm~~G~iVE-~G~~ 239 (539)
T COG1123 214 DLGVVAELADRVVVMYKGEIVE-TGPT 239 (539)
T ss_pred CHHHHHHhcCeEEEEECCEEEE-ecCH
Confidence 9999999999999999999987 4443
No 108
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=2.9e-31 Score=233.16 Aligned_cols=161 Identities=27% Similarity=0.491 Sum_probs=132.0
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc---CC--CHHHHHHHHhhCCCCcccccccccCCC
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF---NL--PYEKARKQLGTFGLAGHAHTIKMKDLS 76 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS 76 (184)
+|+|+++|++|+|.++....+||+||++. .+....++.+++.... .. ....+..+++.+|+.....++++++||
T Consensus 369 ~i~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 447 (556)
T PRK11819 369 MITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLS 447 (556)
T ss_pred HHhCCCCCCCeEEEECCceEEEEEeCchh-hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCC
Confidence 58999999999999865567999999852 2344556666554211 11 123456789999996433345899999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeC-CeEEEecCC
Q psy11928 77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIEN-QTIEEIDGD 155 (184)
Q Consensus 77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~-g~i~~~~~~ 155 (184)
|||||||+||||++.+|++|||||||+|||+.++..+.+.|.++.+|||+||||++++..+||+++++++ |++..+.|+
T Consensus 448 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 448 GGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCC
Confidence 9999999999999999999999999999999999999999999877999999999999999999999986 788777888
Q ss_pred hhHHHHHH
Q psy11928 156 FDDYRKEL 163 (184)
Q Consensus 156 ~~~~~~~~ 163 (184)
+++|.+..
T Consensus 528 ~~~~~~~~ 535 (556)
T PRK11819 528 FQEYEEDK 535 (556)
T ss_pred HHHHHHHH
Confidence 88776553
No 109
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.98 E-value=1.4e-31 Score=211.89 Aligned_cols=154 Identities=27% Similarity=0.364 Sum_probs=123.1
Q ss_pred cccCcccCCceeEEecCC----------eEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNHR----------LRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+.+|++|+|.+++. +.++|+||++. +....++.+++.. ..+.. .+++.++++.+|+.
T Consensus 46 ~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 123 (236)
T TIGR03864 46 LLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPT--LDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA 123 (236)
T ss_pred HHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCC--CcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh
Confidence 589999999999987541 36999999864 3344555555432 11222 23467789999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~ 140 (184)
...+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++.. ||+
T Consensus 124 ~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~ 201 (236)
T TIGR03864 124 ERAD-DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDR 201 (236)
T ss_pred hhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCE
Confidence 6554 589999999999999999999999999999999999999999999988653 5799999999999975 999
Q ss_pred EEEEeCCeEEEecCChhHHH
Q psy11928 141 LWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 141 i~~l~~g~i~~~~~~~~~~~ 160 (184)
+++|++|++.. .++.+.+.
T Consensus 202 i~~l~~G~i~~-~~~~~~~~ 220 (236)
T TIGR03864 202 LVVLHRGRVLA-DGAAAELR 220 (236)
T ss_pred EEEEeCCeEEE-eCCHHHHH
Confidence 99999999875 55555443
No 110
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.98 E-value=1.1e-31 Score=215.96 Aligned_cols=157 Identities=22% Similarity=0.289 Sum_probs=123.0
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..++|+||++...+....++.+++.. ..... .+++.++++
T Consensus 56 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 135 (265)
T TIGR02769 56 LLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLD 135 (265)
T ss_pred HHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 68999999999998653 235999999863123334555554321 11121 245678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+.....++++.+|||||||||+||||++.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.
T Consensus 136 ~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~ 215 (265)
T TIGR02769 136 MVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQ 215 (265)
T ss_pred HcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 9999633223589999999999999999999999999999999999999999999888653 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||++++|++|+++. .++.+++
T Consensus 216 ~~~d~i~~l~~G~i~~-~g~~~~~ 238 (265)
T TIGR02769 216 SFCQRVAVMDKGQIVE-ECDVAQL 238 (265)
T ss_pred HHhcEEEEEeCCEEEE-ECCHHHH
Confidence 9999999999999975 4554443
No 111
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.98 E-value=8.5e-32 Score=210.80 Aligned_cols=151 Identities=29% Similarity=0.366 Sum_probs=122.4
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+.+|++|+|.+++ ++.+||++|++. +....++.+++.. .++.. .+++.++++.+++.
T Consensus 47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 124 (220)
T cd03263 47 MLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT 124 (220)
T ss_pred HHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 58999999999998754 235999999874 3334455554432 12222 23567889999997
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~ 142 (184)
+..+ +++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++|||++++..+||+++
T Consensus 125 ~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~ 203 (220)
T cd03263 125 DKAN-KRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIA 203 (220)
T ss_pred HHHh-ChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEE
Confidence 6554 589999999999999999999999999999999999999999999999765 4699999999999999999999
Q ss_pred EEeCCeEEEecCCh
Q psy11928 143 VIENQTIEEIDGDF 156 (184)
Q Consensus 143 ~l~~g~i~~~~~~~ 156 (184)
++++|+++. .++.
T Consensus 204 ~l~~g~i~~-~~~~ 216 (220)
T cd03263 204 IMSDGKLRC-IGSP 216 (220)
T ss_pred EEECCEEEe-cCCH
Confidence 999999875 4443
No 112
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.98 E-value=1e-31 Score=211.37 Aligned_cols=147 Identities=26% Similarity=0.305 Sum_probs=119.4
Q ss_pred cccCcc-----cCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDL-----QPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~-----~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+. +|++|+|.+++ +..+||+||++. +. ..++.+++.. ..+. . .+++.
T Consensus 45 ~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 121 (227)
T cd03260 45 LLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVE 121 (227)
T ss_pred HHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHH
Confidence 578999 99999998653 235999999874 33 4566655432 1111 1 24567
Q ss_pred HHHhhCCCCccccccc-ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHH
Q psy11928 56 KQLGTFGLAGHAHTIK-MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDER 132 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~-~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~ 132 (184)
++++.+|+....+.+. +.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.. .|||++|||++
T Consensus 122 ~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 201 (227)
T cd03260 122 EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ 201 (227)
T ss_pred HHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH
Confidence 8899999986554423 59999999999999999999999999999999999999999999997653 69999999999
Q ss_pred HHHhhcCeEEEEeCCeEEE
Q psy11928 133 LIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~ 151 (184)
++..+||++++|++|+++.
T Consensus 202 ~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 202 QAARVADRTAFLLNGRLVE 220 (227)
T ss_pred HHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999875
No 113
>PRK10908 cell division protein FtsE; Provisional
Probab=99.98 E-value=1.6e-31 Score=209.73 Aligned_cols=146 Identities=24% Similarity=0.330 Sum_probs=119.8
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ..+... +++.++++.
T Consensus 47 ~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 124 (222)
T PRK10908 47 LICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHH--LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK 124 (222)
T ss_pred HHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcc--ccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHH
Confidence 58999999999997653 236999999874 3344566655432 122222 246678999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 137 (184)
+++....+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.+.+. +.|+|++|||++++..+
T Consensus 125 ~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (222)
T PRK10908 125 VGLLDKAK-NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR 203 (222)
T ss_pred cCChhhhh-CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 99976554 589999999999999999999999999999999999999999999988754 57999999999999999
Q ss_pred cCeEEEEeCCeEE
Q psy11928 138 ECTLWVIENQTIE 150 (184)
Q Consensus 138 ~~~i~~l~~g~i~ 150 (184)
||++++|++|+++
T Consensus 204 ~d~i~~l~~G~i~ 216 (222)
T PRK10908 204 SYRMLTLSDGHLH 216 (222)
T ss_pred CCEEEEEECCEEc
Confidence 9999999999885
No 114
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.98 E-value=1.6e-31 Score=209.42 Aligned_cols=145 Identities=26% Similarity=0.344 Sum_probs=117.5
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +....++.+++.. ..... .+++.++++
T Consensus 50 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 127 (221)
T TIGR02211 50 LLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHH--LLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE 127 (221)
T ss_pred HHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 58999999999998653 146999999864 3334455555432 11121 235678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|++...+ +++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++|||++++.
T Consensus 128 ~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~ 206 (221)
T TIGR02211 128 KVGLEHRIN-HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK 206 (221)
T ss_pred HcCChhhhh-CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 999986554 589999999999999999999999999999999999999999999998643 679999999999997
Q ss_pred hhcCeEEEEeCCeEE
Q psy11928 136 DTECTLWVIENQTIE 150 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~ 150 (184)
. ||++++|++|+++
T Consensus 207 ~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 207 K-LDRVLEMKDGQLF 220 (221)
T ss_pred h-cCEEEEEeCCEec
Confidence 5 7999999999874
No 115
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.5e-31 Score=212.30 Aligned_cols=154 Identities=20% Similarity=0.276 Sum_probs=124.0
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c-CCC----HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F-NLP----YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~-~~~----~~~~~~~l~~~ 61 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +....++.+++... . ... ..++.++++.+
T Consensus 48 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (241)
T PRK10895 48 MVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF 125 (241)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCc--ccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHc
Confidence 68999999999998753 246999999874 33445555554321 1 111 23467789999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHHHHHhhc
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~ 138 (184)
|+....+ +++.+|||||+|||+||||++.+|+++||||||+|||+.++..+.+.+.+ .+.|||++||+++++..+|
T Consensus 126 ~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~ 204 (241)
T PRK10895 126 HIEHLRD-SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVC 204 (241)
T ss_pred CCHHHhh-cchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhc
Confidence 9976554 58999999999999999999999999999999999999999998888764 3679999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++|++|+++. .++.+++
T Consensus 205 d~v~~l~~G~i~~-~~~~~~~ 224 (241)
T PRK10895 205 ERAYIVSQGHLIA-HGTPTEI 224 (241)
T ss_pred CEEEEEeCCeEEe-eCCHHHH
Confidence 9999999999875 5665554
No 116
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.98 E-value=1.6e-31 Score=214.60 Aligned_cols=157 Identities=22% Similarity=0.253 Sum_probs=125.1
Q ss_pred cccCcccCC---ceeEEecC----------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----------C-CC
Q psy11928 2 YAHCDLQPQ---QGELKKNH----------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----------N-LP 50 (184)
Q Consensus 2 ~~~G~~~p~---~G~i~~~~----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----------~-~~ 50 (184)
.|+|+++|+ +|+|.+++ +..++|+||++. +....++.+++.... . ..
T Consensus 49 ~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 126 (262)
T PRK09984 49 HLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN--LVNRLSVLENVLIGALGSTPFWRTCFSWFT 126 (262)
T ss_pred HHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc--cccCCcHHHHHHhhhcccccchhhhccccc
Confidence 589999886 49997654 125899999874 334456666553210 0 01
Q ss_pred ---HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcE
Q psy11928 51 ---YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGG 123 (184)
Q Consensus 51 ---~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~t 123 (184)
..++.++++.+|+....+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|++. +.|
T Consensus 127 ~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 205 (262)
T PRK09984 127 REQKQRALQALTRVGMVHFAH-QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGIT 205 (262)
T ss_pred HHHHHHHHHHHHHcCCHHHHh-CCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 235678899999976554 589999999999999999999999999999999999999999999999754 579
Q ss_pred EEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHHH
Q psy11928 124 VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKE 162 (184)
Q Consensus 124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~ 162 (184)
||++|||++++..+|++++++++|++.. .++.+++.+.
T Consensus 206 vii~tH~~~~~~~~~d~i~~l~~g~i~~-~g~~~~~~~~ 243 (262)
T PRK09984 206 VVVTLHQVDYALRYCERIVALRQGHVFY-DGSSQQFDNE 243 (262)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHhccH
Confidence 9999999999999999999999999864 6676666443
No 117
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.98 E-value=1.7e-31 Score=210.28 Aligned_cols=146 Identities=27% Similarity=0.268 Sum_probs=118.3
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ..... .+++.++++
T Consensus 55 ~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 132 (228)
T PRK10584 55 ILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM--LIPTLNALENVELPALLRGESSRQSRNGAKALLE 132 (228)
T ss_pred HHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccc--cCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 68999999999998653 136999999874 3334455555432 11111 245778899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+++.+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++ +.|||++|||.+++.
T Consensus 133 ~~~l~~~~~-~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 133 QLGLGKRLD-HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred HcCCHhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 999976554 589999999999999999999999999999999999999999999998643 679999999999986
Q ss_pred hhcCeEEEEeCCeEEE
Q psy11928 136 DTECTLWVIENQTIEE 151 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~ 151 (184)
. ||+++++++|++.+
T Consensus 212 ~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 212 R-CDRRLRLVNGQLQE 226 (228)
T ss_pred h-CCEEEEEECCEEEe
Confidence 5 99999999999854
No 118
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.8e-31 Score=213.36 Aligned_cols=154 Identities=25% Similarity=0.364 Sum_probs=123.1
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-------------cC-----CC-
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------------FN-----LP- 50 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------------~~-----~~- 50 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +....++.+++... .. ..
T Consensus 50 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (255)
T PRK11300 50 CLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVR--LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE 127 (255)
T ss_pred HHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcc--cCCCCcHHHHHHHhhhccccchhhhhhccccccccch
Confidence 68999999999998754 124889999874 34445555544321 00 00
Q ss_pred ---HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcE
Q psy11928 51 ---YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGG 123 (184)
Q Consensus 51 ---~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~t 123 (184)
...+.++++.+|+....+ +++.+||||||||++||||++.+|++|||||||+|||+.++..+.+.|.+. +.|
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~t 206 (255)
T PRK11300 128 SEALDRAATWLERVGLLEHAN-RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVT 206 (255)
T ss_pred hHHHHHHHHHHHhCChhhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCE
Confidence 134667889999976554 589999999999999999999999999999999999999999999998643 679
Q ss_pred EEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 124 VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++||+++++..+||+++++++|+++. .++.+.+
T Consensus 207 ii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~ 241 (255)
T PRK11300 207 VLLIEHDMKLVMGISDRIYVVNQGTPLA-NGTPEEI 241 (255)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCeEEe-cCCHHHH
Confidence 9999999999999999999999999974 5555554
No 119
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.98 E-value=9.4e-32 Score=238.89 Aligned_cols=154 Identities=23% Similarity=0.251 Sum_probs=123.8
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ ++.|+|+||++...+.+..++.+++.. ..+. . .+++.++++
T Consensus 369 ~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 448 (623)
T PRK10261 369 ALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLE 448 (623)
T ss_pred HHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999998753 236999999873234555666655432 1121 1 245778999
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~ 135 (184)
.+|+.....++++++|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++.
T Consensus 449 ~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~ 528 (623)
T PRK10261 449 RVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVE 528 (623)
T ss_pred HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999963223468999999999999999999999999999999999999999999999854 4689999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCCh
Q psy11928 136 DTECTLWVIENQTIEEIDGDF 156 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~ 156 (184)
.+||++++|++|++++ .++.
T Consensus 529 ~~~dri~vl~~G~iv~-~g~~ 548 (623)
T PRK10261 529 RISHRVAVMYLGQIVE-IGPR 548 (623)
T ss_pred HhCCEEEEEECCEEEE-ecCH
Confidence 9999999999999975 4443
No 120
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.3e-31 Score=212.76 Aligned_cols=154 Identities=30% Similarity=0.360 Sum_probs=124.4
Q ss_pred cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARK 56 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~ 56 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +....++.+++.. ..+.. ..++.+
T Consensus 47 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~ 124 (242)
T PRK11124 47 VLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN--LWPHLTVQQNLIEAPCRVLGLSKDQALARAEK 124 (242)
T ss_pred HHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 58999999999998653 235999999874 3444566655431 11222 234677
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL 133 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~ 133 (184)
+++.+|+....+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|++. +.|+|++|||.++
T Consensus 125 ~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 125 LLERLRLKPYAD-RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred HHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 899999976554 589999999999999999999999999999999999999999999998753 6899999999999
Q ss_pred HHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 134 IRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+..+||++++|++|++.. .++.+.+
T Consensus 204 ~~~~~d~i~~l~~g~i~~-~~~~~~~ 228 (242)
T PRK11124 204 ARKTASRVVYMENGHIVE-QGDASCF 228 (242)
T ss_pred HHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 999999999999999875 5555444
No 121
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.98 E-value=6.4e-32 Score=210.57 Aligned_cols=145 Identities=25% Similarity=0.387 Sum_probs=118.4
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~ 60 (184)
+|+|+.+|++|+|.+++ ++.++|++|++. +....++.+++... .+.. .+++.++++.
T Consensus 46 ~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 123 (214)
T cd03292 46 LIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFR--LLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL 123 (214)
T ss_pred HHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCch--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 58999999999997653 235999999874 33444555554321 1222 2356788999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 137 (184)
+|++...+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|||++|||.+++..+
T Consensus 124 ~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~ 202 (214)
T cd03292 124 VGLSHKHR-ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202 (214)
T ss_pred cCCHHHhh-CChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 99976554 589999999999999999999999999999999999999999999998764 57999999999999999
Q ss_pred cCeEEEEeCCeE
Q psy11928 138 ECTLWVIENQTI 149 (184)
Q Consensus 138 ~~~i~~l~~g~i 149 (184)
||++++|++|++
T Consensus 203 ~d~i~~l~~G~~ 214 (214)
T cd03292 203 RHRVIALERGKL 214 (214)
T ss_pred CCEEEEEeCCcC
Confidence 999999999864
No 122
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.98 E-value=2.1e-31 Score=210.25 Aligned_cols=147 Identities=23% Similarity=0.219 Sum_probs=119.6
Q ss_pred cccCcccCCceeEEecCC------eEEEEEecCCCCCCCccCCHHHHHHHh-----cCCCH----HHHHHHHhhCCCCcc
Q psy11928 2 YAHCDLQPQQGELKKNHR------LRIGRFDQHSGEHLTAEETPAEYLQRL-----FNLPY----EKARKQLGTFGLAGH 66 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~~~~~~~~~~-----~~~~~----~~~~~~l~~~~l~~~ 66 (184)
+|+|+.+|++|+|.+++. ...+|++|++. +....++.+++... ..... +++.++++.+|++..
T Consensus 30 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 107 (230)
T TIGR01184 30 LISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEA 107 (230)
T ss_pred HHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHH
Confidence 589999999999987642 23589999874 33445555554321 11221 246778999999865
Q ss_pred cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEE
Q psy11928 67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 67 ~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~ 142 (184)
.+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||++++..+||+++
T Consensus 108 ~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~ 186 (230)
T TIGR01184 108 AD-KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVV 186 (230)
T ss_pred Hc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 54 589999999999999999999999999999999999999999999988653 6799999999999999999999
Q ss_pred EEeCCeEEE
Q psy11928 143 VIENQTIEE 151 (184)
Q Consensus 143 ~l~~g~i~~ 151 (184)
+|++|+++.
T Consensus 187 ~l~~G~i~~ 195 (230)
T TIGR01184 187 MLTNGPAAN 195 (230)
T ss_pred EEeCCcEec
Confidence 999999864
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.98 E-value=2.8e-31 Score=208.74 Aligned_cols=149 Identities=23% Similarity=0.270 Sum_probs=117.5
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C-H---HH-HHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P-Y---EK-ARKQL 58 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~-~---~~-~~~~l 58 (184)
+|+|+++|++|+|.+++ +..+||++|++...+....++.+++.. .... . . .. +.+++
T Consensus 50 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l 129 (228)
T cd03257 50 AILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLL 129 (228)
T ss_pred HHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 68999999999998643 236999999873123334555554431 1111 1 1 11 24678
Q ss_pred hhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928 59 GTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL 133 (184)
Q Consensus 59 ~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~ 133 (184)
+.+++. ...+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++|||+++
T Consensus 130 ~~~~l~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 208 (228)
T cd03257 130 VGVGLPEEVLN-RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV 208 (228)
T ss_pred HHCCCChhHhh-CCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 899995 3444 589999999999999999999999999999999999999999999998653 6799999999999
Q ss_pred HHhhcCeEEEEeCCeEEE
Q psy11928 134 IRDTECTLWVIENQTIEE 151 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i~~ 151 (184)
+..+||++++|++|++..
T Consensus 209 ~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 209 VAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHhcCeEEEEeCCEEEe
Confidence 999999999999999864
No 124
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.9e-31 Score=213.63 Aligned_cols=147 Identities=22% Similarity=0.281 Sum_probs=120.3
Q ss_pred cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~~ 68 (184)
+|+|+++|++|+|.+++ ...+||++|++. +....++.+++.. ..+.. ..++.++++.+|+....+
T Consensus 46 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 123 (255)
T PRK11248 46 LIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG--LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK 123 (255)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc--cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh
Confidence 58999999999998754 235899999864 3344556555432 11222 235678899999976554
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
+++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||+||||++++..+||++++|
T Consensus 124 -~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 124 -RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL 202 (255)
T ss_pred -CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 589999999999999999999999999999999999999999999998764 679999999999999999999999
Q ss_pred e--CCeEEE
Q psy11928 145 E--NQTIEE 151 (184)
Q Consensus 145 ~--~g~i~~ 151 (184)
+ +|++++
T Consensus 203 ~~~~G~i~~ 211 (255)
T PRK11248 203 SPGPGRVVE 211 (255)
T ss_pred eCCCcEEEE
Confidence 8 488865
No 125
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=1.8e-31 Score=231.37 Aligned_cols=160 Identities=38% Similarity=0.696 Sum_probs=142.1
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccccccccCCChhHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK 80 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k 80 (184)
+|+|...|.+|+|.+....++||+.|+... +....++.+++..... .....++.+|..|+|......++++.||||||
T Consensus 367 ~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~-l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk 445 (530)
T COG0488 367 LLAGELGPLSGTVKVGETVKIGYFDQHRDE-LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEK 445 (530)
T ss_pred HHhhhcccCCceEEeCCceEEEEEEehhhh-cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHH
Confidence 578899999999999888899999998752 3366788888876542 23577899999999987666679999999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
.|+.||+.++.+|.+||||||||+||+.++..+.+.|.++.+|||+||||++|+..+|+++|++++ ++..+.|.+++|.
T Consensus 446 ~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 7877889998887
Q ss_pred HHH
Q psy11928 161 KEL 163 (184)
Q Consensus 161 ~~~ 163 (184)
+..
T Consensus 525 ~~~ 527 (530)
T COG0488 525 EQK 527 (530)
T ss_pred Hhh
Confidence 653
No 126
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.98 E-value=2.9e-31 Score=212.67 Aligned_cols=156 Identities=25% Similarity=0.307 Sum_probs=119.8
Q ss_pred cccCcccCCceeEEecCC--------------------eEEEEEecCCCCCC----CccCCHHHHHHHhcCCC----HHH
Q psy11928 2 YAHCDLQPQQGELKKNHR--------------------LRIGRFDQHSGEHL----TAEETPAEYLQRLFNLP----YEK 53 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~--------------------~~ig~v~q~~~~~l----~~~~~~~~~~~~~~~~~----~~~ 53 (184)
+|+|+++|++|+|.+++. ..++|+||++...+ +..+++...+....... ..+
T Consensus 51 ~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 130 (258)
T PRK11701 51 ALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT 130 (258)
T ss_pred HHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH
Confidence 689999999999976542 24999999873122 22333322211111111 235
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEec
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSH 129 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsH 129 (184)
+.++++.+++.....++++.+||||||||++|||||+.+|+++||||||++||+.++.++.+.+++. +.|||++||
T Consensus 131 ~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 131 AGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred HHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 6778999999642223589999999999999999999999999999999999999999999988643 679999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
|++++..+||+++++++|++++ .++.++
T Consensus 211 ~~~~~~~~~d~i~~l~~g~i~~-~~~~~~ 238 (258)
T PRK11701 211 DLAVARLLAHRLLVMKQGRVVE-SGLTDQ 238 (258)
T ss_pred CHHHHHHhcCEEEEEECCEEEE-eCCHHH
Confidence 9999999999999999999975 454443
No 127
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.98 E-value=2e-31 Score=209.53 Aligned_cols=156 Identities=23% Similarity=0.293 Sum_probs=123.3
Q ss_pred cccCcccCCceeEEecCC------eEEEEEecCCCCCCCccCCHHHHHHHh-------c-CCC---HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNHR------LRIGRFDQHSGEHLTAEETPAEYLQRL-------F-NLP---YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~-~~~---~~~~~~~l~~~~l~ 64 (184)
+|+|+.+|++|+|.+++. +.++|+||++........++.+++... . ... .+++.++++.++++
T Consensus 25 ~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 104 (223)
T TIGR03771 25 AILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT 104 (223)
T ss_pred HHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCc
Confidence 589999999999998763 469999998742111224555544221 0 011 23567789999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
...+ +++.+||||||||++||||++.+|+++|+||||++||+.++..+.+.+.+. +.|+|++|||++++..+||++
T Consensus 105 ~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i 183 (223)
T TIGR03771 105 ELAD-RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRV 183 (223)
T ss_pred hhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 6554 589999999999999999999999999999999999999999999999754 579999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
+++ +|+++. .++.+++.
T Consensus 184 ~~l-~G~i~~-~~~~~~~~ 200 (223)
T TIGR03771 184 VLL-NGRVIA-DGTPQQLQ 200 (223)
T ss_pred EEE-CCEEEe-ecCHHHhc
Confidence 999 799874 55555543
No 128
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=5.6e-32 Score=210.39 Aligned_cols=156 Identities=28% Similarity=0.438 Sum_probs=131.6
Q ss_pred cccCcccCCceeEEecC-------CeEEEEEecCCCCCCCccCCHHH---HHHHhcCCCHH----HHHHHHhhCCCCccc
Q psy11928 2 YAHCDLQPQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAE---YLQRLFNLPYE----KARKQLGTFGLAGHA 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~---~~~~~~~~~~~----~~~~~l~~~~l~~~~ 67 (184)
.|.|+++|++|+|.+++ +.+|||+|.+.. +.+.+++.+ |+....+++++ ++..+|+++++....
T Consensus 47 mILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERG--Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~ 124 (300)
T COG4152 47 MILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG--LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKK 124 (300)
T ss_pred HHhccCCccCceEEEcCcchhhhhhhhcccChhhhc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccc
Confidence 47899999999999986 357999999863 666666655 44445566543 456789999998777
Q ss_pred ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
. +++.+||.|++||+++..+++++|+++|||||||||||.+.+.+.+.+.+ .|.|||++||.++.++++||++++|
T Consensus 125 ~-~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL 203 (300)
T COG4152 125 T-KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML 203 (300)
T ss_pred c-chHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee
Confidence 5 58999999999999999999999999999999999999999999998865 4789999999999999999999999
Q ss_pred eCCeEEEecCChhHHHH
Q psy11928 145 ENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 145 ~~g~i~~~~~~~~~~~~ 161 (184)
++|+.+. .|+....++
T Consensus 204 ~kG~~V~-~G~v~~ir~ 219 (300)
T COG4152 204 KKGQTVL-YGTVEDIRR 219 (300)
T ss_pred cCCceEE-eccHHHHHH
Confidence 9999864 666666555
No 129
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.1e-31 Score=215.82 Aligned_cols=156 Identities=24% Similarity=0.329 Sum_probs=122.1
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..|+|+||++...+.. .++.+++.. ..+... +.+.++++
T Consensus 52 ~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 130 (280)
T PRK13649 52 LLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLA 130 (280)
T ss_pred HHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 68999999999998653 13599999986211222 355555432 122222 24567888
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..
T Consensus 131 ~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~ 210 (280)
T PRK13649 131 LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVAN 210 (280)
T ss_pred HcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 9999743224589999999999999999999999999999999999999999999998754 6799999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+||++++|++|++.. .++.+++
T Consensus 211 ~~d~i~~l~~G~i~~-~g~~~~~ 232 (280)
T PRK13649 211 YADFVYVLEKGKLVL-SGKPKDI 232 (280)
T ss_pred hCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999875 4554443
No 130
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5e-31 Score=234.72 Aligned_cols=157 Identities=23% Similarity=0.412 Sum_probs=127.6
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHH--------------------------Hh----c---C
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQ--------------------------RL----F---N 48 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~--------------------------~~----~---~ 48 (184)
+|+|+++|++|+|.+.+...+||++|++.. . ..+...++. .. . .
T Consensus 46 iL~G~~~pd~G~I~~~~~~~i~~~~q~~~~-~--~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (638)
T PRK10636 46 LLKNEISADGGSYTFPGNWQLAWVNQETPA-L--PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDA 122 (638)
T ss_pred HHhCCCCCCCceEEecCCCEEEEEecCCCC-C--CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Confidence 689999999999998877779999996421 1 112111110 00 0 0
Q ss_pred -CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEE
Q psy11928 49 -LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIV 127 (184)
Q Consensus 49 -~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiiv 127 (184)
....++.++++.+|+.....++++++|||||||||+||+||+.+|++|||||||||||+.++.++.++|.++++|||+|
T Consensus 123 ~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviiv 202 (638)
T PRK10636 123 WTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILI 202 (638)
T ss_pred cchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEE
Confidence 0124577889999997322345899999999999999999999999999999999999999999999999998999999
Q ss_pred ecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 128 SHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 128 sHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
|||++++..+|+++++|++|++..+.|+++.|..
T Consensus 203 sHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 203 SHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred eCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999999999999999888898887754
No 131
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=214.66 Aligned_cols=154 Identities=22% Similarity=0.247 Sum_probs=123.7
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc----C----C---CHHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF----N----L---PYEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~----~---~~~~~~~~l~ 59 (184)
.|+|+++|++|+|.+++ +..++|+||++. +....++.+++.... . . ..+++.++++
T Consensus 56 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T PRK10575 56 MLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133 (265)
T ss_pred HHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHH
Confidence 58999999999998764 235999999863 333456655543210 0 1 1235678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+++....+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++||+++++.
T Consensus 134 ~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~ 212 (265)
T PRK10575 134 LVGLKPLAH-RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA 212 (265)
T ss_pred HcCCHHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999976554 589999999999999999999999999999999999999999999988653 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||++++|++|+++. .++.+++
T Consensus 213 ~~~d~i~~l~~G~i~~-~~~~~~~ 235 (265)
T PRK10575 213 RYCDYLVALRGGEMIA-QGTPAEL 235 (265)
T ss_pred HhCCEEEEEECCeEEE-ecCHHHh
Confidence 9999999999999975 4555544
No 132
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=1.3e-31 Score=208.74 Aligned_cols=145 Identities=26% Similarity=0.376 Sum_probs=118.4
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ +..++|++|++. +....++.+++.. ..+.. .+++.++++.
T Consensus 45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (213)
T cd03262 45 CINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN--LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEK 122 (213)
T ss_pred HHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence 58999999999998653 235999999874 3334455555432 11222 2346778999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 137 (184)
+|+....+ +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++..+
T Consensus 123 ~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 123 VGLADKAD-AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred cCCHhHhh-hCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 99976554 589999999999999999999999999999999999999999999999754 67999999999999999
Q ss_pred cCeEEEEeCCeE
Q psy11928 138 ECTLWVIENQTI 149 (184)
Q Consensus 138 ~~~i~~l~~g~i 149 (184)
||++++|++|++
T Consensus 202 ~d~i~~l~~g~i 213 (213)
T cd03262 202 ADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEEeCCcC
Confidence 999999999864
No 133
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=4.2e-31 Score=208.48 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=122.1
Q ss_pred cccCcccC----CceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C---HHHHHHHHhhC
Q psy11928 2 YAHCDLQP----QQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P---YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p----~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~---~~~~~~~l~~~ 61 (184)
+|+|+.+| ++|+|.+++ +..++|++|++...+....++.+++.. ..+. . .+++.++++.+
T Consensus 31 ~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (230)
T TIGR02770 31 AILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV 110 (230)
T ss_pred HHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHc
Confidence 58999999 899998764 247999999973112333444433221 1111 1 23477889999
Q ss_pred CCC---cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHH
Q psy11928 62 GLA---GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLI 134 (184)
Q Consensus 62 ~l~---~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 134 (184)
++. ... ++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++||+++++
T Consensus 111 ~l~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 189 (230)
T TIGR02770 111 GLPDPEEVL-KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVV 189 (230)
T ss_pred CCCchHHHH-hCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 997 234 3589999999999999999999999999999999999999999999888653 67999999999999
Q ss_pred HhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 135 RDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 135 ~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
..+||++++|++|++.. .++.+++
T Consensus 190 ~~~~d~i~~l~~G~i~~-~~~~~~~ 213 (230)
T TIGR02770 190 ARIADEVAVMDDGRIVE-RGTVKEI 213 (230)
T ss_pred HHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999975 4555444
No 134
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.1e-31 Score=215.94 Aligned_cols=153 Identities=26% Similarity=0.311 Sum_probs=122.1
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l 63 (184)
.|+|+++|++|+|.+++ +..+||+||++. ......++.+++.. ..+... +++.++++.+|+
T Consensus 52 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL 130 (279)
T PRK13650 52 LIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGM 130 (279)
T ss_pred HHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC
Confidence 58999999999998754 236999999863 12233455555432 112222 356788999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~ 139 (184)
.+..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.+++. +.|||+||||++++. .||
T Consensus 131 ~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~d 208 (279)
T PRK13650 131 QDFKE-REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSD 208 (279)
T ss_pred HhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCC
Confidence 86554 589999999999999999999999999999999999999999999988643 679999999999995 799
Q ss_pred eEEEEeCCeEEEecCChhH
Q psy11928 140 TLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~ 158 (184)
++++|++|++.. .++.++
T Consensus 209 ri~~l~~G~i~~-~g~~~~ 226 (279)
T PRK13650 209 RVLVMKNGQVES-TSTPRE 226 (279)
T ss_pred EEEEEECCEEEE-ECCHHH
Confidence 999999999875 455444
No 135
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=5e-31 Score=211.47 Aligned_cols=154 Identities=27% Similarity=0.313 Sum_probs=124.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC----CHHHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL----PYEKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~----~~~~~~~~l~~~~l 63 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++... ... ...++.++++.+|+
T Consensus 47 ~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 124 (258)
T PRK13548 47 ALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDL 124 (258)
T ss_pred HHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCC
Confidence 58999999999998754 235999999864 33445666665431 111 12346788999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTL------NAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL 133 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~------~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~ 133 (184)
....+ +++.+|||||||||+|||||+ .+|+++||||||+|||+.++..+.+.|+++ +.|||++|||+++
T Consensus 125 ~~~~~-~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 203 (258)
T PRK13548 125 AHLAG-RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL 203 (258)
T ss_pred HhHhc-CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 76554 589999999999999999999 599999999999999999999999988643 5799999999999
Q ss_pred HHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 134 IRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+..+||++++|++|++.. .++.+++
T Consensus 204 ~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (258)
T PRK13548 204 AARYADRIVLLHQGRLVA-DGTPAEV 228 (258)
T ss_pred HHHhcCEEEEEECCEEEe-eCCHHHH
Confidence 999999999999999874 5555554
No 136
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=3.2e-31 Score=211.72 Aligned_cols=154 Identities=25% Similarity=0.331 Sum_probs=123.6
Q ss_pred cccCcccCCceeEEecC------------------------CeEEEEEecCCCCCCCccCCHHHHHHHh----cCCC---
Q psy11928 2 YAHCDLQPQQGELKKNH------------------------RLRIGRFDQHSGEHLTAEETPAEYLQRL----FNLP--- 50 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~----~~~~--- 50 (184)
+|+|+++|++|+|.+++ ++.++|++|++. +....++.+++... .+..
T Consensus 45 ~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~ 122 (252)
T TIGR03005 45 ILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFN--LFPHKTVLDNVTEAPVLVLGMARAE 122 (252)
T ss_pred HHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcc--cCCCCcHHHHHHHHHHHhcCCCHHH
Confidence 68999999999997643 235999999864 33445555554321 1121
Q ss_pred -HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEE
Q psy11928 51 -YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVI 125 (184)
Q Consensus 51 -~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tii 125 (184)
.+++.++++.+|+....+ +++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|+|
T Consensus 123 ~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 123 AEKRAMELLDMVGLADKAD-HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred HHHHHHHHHHHcCChhHhh-cChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 234678899999976554 589999999999999999999999999999999999999999999988653 67999
Q ss_pred EEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 126 ivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++|||++++..+||++++|++|++++ .++.+++
T Consensus 202 ivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 234 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEI 234 (252)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999975 4555444
No 137
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4e-31 Score=211.52 Aligned_cols=154 Identities=25% Similarity=0.266 Sum_probs=123.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cCC----CHHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FNL----PYEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~~----~~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++... +.. ...++.++++
T Consensus 47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (255)
T PRK11231 47 CFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHL--TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME 124 (255)
T ss_pred HHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCC--CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHH
Confidence 68999999999998754 235999999864 33344555554321 111 1235677899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+|+....+ +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++.+
T Consensus 125 ~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~ 203 (255)
T PRK11231 125 QTRINHLAD-RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASR 203 (255)
T ss_pred HcCCHHHHc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 999976554 589999999999999999999999999999999999999999999998754 6799999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+||+++++++|++.. .++.+++
T Consensus 204 ~~d~i~~l~~G~i~~-~~~~~~~ 225 (255)
T PRK11231 204 YCDHLVVLANGHVMA-QGTPEEV 225 (255)
T ss_pred hcCEEEEEECCeEEE-EcCHHHh
Confidence 999999999999874 4555544
No 138
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.5e-31 Score=212.46 Aligned_cols=154 Identities=23% Similarity=0.262 Sum_probs=124.2
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--c------CCC---HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--F------NLP---YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~------~~~---~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++... . ... .+++.++++
T Consensus 52 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 129 (265)
T PRK10253 52 TLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNAT--TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ 129 (265)
T ss_pred HHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCc--CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHH
Confidence 68999999999998754 235999999874 33345555554321 0 011 235678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+....+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++.
T Consensus 130 ~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 130 ATGITHLAD-QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQAC 208 (265)
T ss_pred HcCCHHHhc-CCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999976554 589999999999999999999999999999999999999999999988653 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||++++|++|++.. .++..++
T Consensus 209 ~~~d~i~~l~~G~i~~-~g~~~~~ 231 (265)
T PRK10253 209 RYASHLIALREGKIVA-QGAPKEI 231 (265)
T ss_pred HhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999875 5555554
No 139
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.97 E-value=3.5e-31 Score=212.01 Aligned_cols=154 Identities=22% Similarity=0.269 Sum_probs=124.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cCC-C---HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FNL-P---YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~~-~---~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ ++.++|++|++. +....++.+++... ... . .+++.++++
T Consensus 46 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (256)
T TIGR03873 46 LLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALA 123 (256)
T ss_pred HHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHH
Confidence 58999999999998754 235999999873 23345565554321 111 1 235677899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+++.+..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++..
T Consensus 124 ~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (256)
T TIGR03873 124 RTELSHLAD-RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAAS 202 (256)
T ss_pred HcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999976554 589999999999999999999999999999999999999999999999765 6799999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+||++++|++|+++. .++.+++
T Consensus 203 ~~d~i~~l~~G~i~~-~g~~~~~ 224 (256)
T TIGR03873 203 YCDHVVVLDGGRVVA-AGPPREV 224 (256)
T ss_pred hCCEEEEEeCCCEEE-ecCHHHh
Confidence 999999999999975 5665554
No 140
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.2e-31 Score=214.57 Aligned_cols=155 Identities=23% Similarity=0.304 Sum_probs=124.1
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~ 61 (184)
+|+|+.+|++|+|.+++ +..+||+||++...+ ...++.+++.. ..+.+ .+++.++++.+
T Consensus 51 ~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (283)
T PRK13636 51 NLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT 129 (283)
T ss_pred HHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC
Confidence 58999999999998754 135999999873112 23455555432 12222 23467789999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~ 137 (184)
|+....+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||++|||++++..+
T Consensus 130 gL~~~~~-~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~ 208 (283)
T PRK13636 130 GIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLY 208 (283)
T ss_pred CChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 9986654 589999999999999999999999999999999999999999998888653 67999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|+++. .++.+++
T Consensus 209 ~dri~~l~~G~i~~-~g~~~~~ 229 (283)
T PRK13636 209 CDNVFVMKEGRVIL-QGNPKEV 229 (283)
T ss_pred CCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999975 5655543
No 141
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.2e-31 Score=213.23 Aligned_cols=155 Identities=24% Similarity=0.281 Sum_probs=121.6
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~ 61 (184)
+|+|+++|++|+|.+++ +..+||+||++...+ ...++.+++.. ..+... +++.++++.+
T Consensus 46 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (271)
T PRK13638 46 NLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI-FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLV 124 (271)
T ss_pred HHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 58999999999997653 135999999863111 12233333321 122222 3456789999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 138 (184)
|+.+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||++++..+|
T Consensus 125 ~l~~~~~-~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 203 (271)
T PRK13638 125 DAQHFRH-QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEIS 203 (271)
T ss_pred CCHhHhc-CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 9976554 589999999999999999999999999999999999999999999998764 679999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++|++|+++. .++.+++
T Consensus 204 d~i~~l~~G~i~~-~g~~~~~ 223 (271)
T PRK13638 204 DAVYVLRQGQILT-HGAPGEV 223 (271)
T ss_pred CEEEEEECCEEEE-eCCHHHH
Confidence 9999999999875 5555443
No 142
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.4e-31 Score=214.48 Aligned_cols=155 Identities=25% Similarity=0.359 Sum_probs=124.1
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l 63 (184)
+|+|+++|++|+|.+++ +..+||+||++...+. ..++.+++.. ..+... +++.++++.+|+
T Consensus 49 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 127 (277)
T PRK13652 49 HFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL 127 (277)
T ss_pred HHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 58999999999998754 1359999998731222 3455555432 112222 346788999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~ 139 (184)
.+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+++. +.|||++|||++++...||
T Consensus 128 ~~~~~-~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~d 206 (277)
T PRK13652 128 EELRD-RVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMAD 206 (277)
T ss_pred hhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 86554 589999999999999999999999999999999999999999999988653 6799999999999999999
Q ss_pred eEEEEeCCeEEEecCChhHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++|++|+++. .++.+++
T Consensus 207 rv~~l~~G~i~~-~g~~~~~ 225 (277)
T PRK13652 207 YIYVMDKGRIVA-YGTVEEI 225 (277)
T ss_pred EEEEEECCeEEE-ECCHHHH
Confidence 999999999875 5665554
No 143
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.3e-31 Score=202.97 Aligned_cols=158 Identities=24% Similarity=0.328 Sum_probs=127.7
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCC-C----HHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNL-P----YEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~-~----~~~~~~~l~~~~ 62 (184)
.++|+.+|++|+|.++. +..|||+||+++ ..+++++|+...+....+. . +.++.++|+.|.
T Consensus 49 mi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~ 128 (243)
T COG1137 49 MIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH 128 (243)
T ss_pred EEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc
Confidence 46899999999998763 457999999986 4466666643333222211 1 234668999999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecCHHHHHhhcC
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN---EYKGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~~ 139 (184)
+.+..+ ++..+||||||+|+.|||||+.+|+++||||||+|.||.+...+.++++ +.|..|+|+-|+..+...+||
T Consensus 129 i~hlr~-~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~d 207 (243)
T COG1137 129 ITHLRD-SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICD 207 (243)
T ss_pred hHHHhc-CcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhh
Confidence 987765 5899999999999999999999999999999999999999888777765 457899999999999999999
Q ss_pred eEEEEeCCeEEEecCChhHHHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
|.+++.+|++.. .|+++++.+
T Consensus 208 RaYIi~~G~vla-~G~p~ei~~ 228 (243)
T COG1137 208 RAYIISDGKVLA-EGSPEEIVN 228 (243)
T ss_pred eEEEEecCeEEe-cCCHHHHhc
Confidence 999999999974 777766543
No 144
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=8.5e-31 Score=208.68 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=122.5
Q ss_pred cccCcccCC-----ceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcC-CC----HHHHH
Q psy11928 2 YAHCDLQPQ-----QGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFN-LP----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~-~~----~~~~~ 55 (184)
+|+|+++|+ +|+|.+++ +..++|+||++. +.. .++.+++.. ..+ .. .+++.
T Consensus 46 ~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~ 122 (247)
T TIGR00972 46 SLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVE 122 (247)
T ss_pred HHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence 588999998 99998643 235999999874 333 555555432 112 11 23467
Q ss_pred HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
++++.+|+. ...+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++. +.|||+|||
T Consensus 123 ~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 123 ESLKKAALWDEVKDRLH-DSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHcCCCcchhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 789999997 4444 589999999999999999999999999999999999999999999999764 379999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++..+||++++|++|+++. .++.+++
T Consensus 202 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 230 (247)
T TIGR00972 202 NMQQAARISDRTAFFYDGELVE-YGPTEQI 230 (247)
T ss_pred CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999975 4555444
No 145
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.3e-32 Score=202.41 Aligned_cols=153 Identities=30% Similarity=0.456 Sum_probs=121.2
Q ss_pred cCcccCCceeEEecC------------------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCH----HH
Q psy11928 4 HCDLQPQQGELKKNH------------------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EK 53 (184)
Q Consensus 4 ~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~----~~ 53 (184)
.=+.+|+.|.|.+++ |.+.|+|||+.+ ..++.-+|+.+......+.++ ++
T Consensus 53 N~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~ 132 (256)
T COG4598 53 NFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIER 132 (256)
T ss_pred HhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHH
Confidence 346789999997542 345899999875 334444444443333333333 45
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecC
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN---EYKGGVIIVSHD 130 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd 130 (184)
++.+|.++|+.+..+ .+|..|||||+||++|||||+.+|+++|+|||||+|||+-.-++++.+. +.|.|+++|||.
T Consensus 133 Ae~~L~kVGi~ek~~-~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHE 211 (256)
T COG4598 133 AEKYLAKVGIAEKAD-AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211 (256)
T ss_pred HHHHHHHhCchhhhh-cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 778999999987665 5899999999999999999999999999999999999998887777665 458999999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
+.|+...++.++.+++|.|.+ .|++++
T Consensus 212 M~FAR~Vss~v~fLh~G~iEE-~G~P~q 238 (256)
T COG4598 212 MGFARDVSSHVIFLHQGKIEE-EGPPEQ 238 (256)
T ss_pred hhHHHhhhhheEEeecceecc-cCChHH
Confidence 999999999999999999965 566544
No 146
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.7e-31 Score=214.32 Aligned_cols=155 Identities=23% Similarity=0.241 Sum_probs=120.6
Q ss_pred cccCcccCCceeEEecC----------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH----------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQL 58 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l 58 (184)
+|+|+++|++|+|.+++ +..++|++|++...+. ..++.+++.. ..+... +++.+++
T Consensus 56 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll 134 (289)
T PRK13645 56 LTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELL 134 (289)
T ss_pred HHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 68999999999997643 2359999998631121 2345554432 112222 3456788
Q ss_pred hhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928 59 GTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL 133 (184)
Q Consensus 59 ~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~ 133 (184)
+.+++. ... ++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||+||||+++
T Consensus 135 ~~~~L~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~ 213 (289)
T PRK13645 135 KLVQLPEDYV-KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ 213 (289)
T ss_pred HHcCCChhHh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999995 344 4589999999999999999999999999999999999999999999988653 6799999999999
Q ss_pred HHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 134 IRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+..+||++++|++|+++. .++.+++
T Consensus 214 ~~~~~d~i~~l~~G~i~~-~g~~~~~ 238 (289)
T PRK13645 214 VLRIADEVIVMHEGKVIS-IGSPFEI 238 (289)
T ss_pred HHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999875 4554443
No 147
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=5.3e-31 Score=229.43 Aligned_cols=154 Identities=21% Similarity=0.235 Sum_probs=127.0
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCC---CHHHHHHHHhhCCCCcc
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNL---PYEKARKQLGTFGLAGH 66 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~ 66 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++...... ..+++.++++.+|+...
T Consensus 56 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~ 133 (510)
T PRK15439 56 IIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD 133 (510)
T ss_pred HHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc
Confidence 68999999999998754 135999999874 44556666665432111 13457788999999866
Q ss_pred cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEE
Q psy11928 67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 67 ~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
.+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++. +.|||+||||++++..+||++++
T Consensus 134 ~~-~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~ 212 (510)
T PRK15439 134 LD-SSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISV 212 (510)
T ss_pred cc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 54 589999999999999999999999999999999999999999999998754 67999999999999999999999
Q ss_pred EeCCeEEEecCChhHH
Q psy11928 144 IENQTIEEIDGDFDDY 159 (184)
Q Consensus 144 l~~g~i~~~~~~~~~~ 159 (184)
|++|++.. .++++++
T Consensus 213 l~~G~i~~-~g~~~~~ 227 (510)
T PRK15439 213 MRDGTIAL-SGKTADL 227 (510)
T ss_pred EECCEEEE-ecChHHc
Confidence 99999975 5666554
No 148
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=8.9e-31 Score=229.91 Aligned_cols=156 Identities=26% Similarity=0.422 Sum_probs=126.4
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH----h-------------cCC--C------------
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR----L-------------FNL--P------------ 50 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~----~-------------~~~--~------------ 50 (184)
+|+|+++|++|+|.++....|||++|++. +....|+.+++.. . ... .
T Consensus 50 ~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (552)
T TIGR03719 50 IMAGVDKEFNGEARPAPGIKVGYLPQEPQ--LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAEL 127 (552)
T ss_pred HHhCCCCCCCceEEecCCCEEEEEeccCC--CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 68999999999999877778999999874 2233344443321 0 000 0
Q ss_pred ------------HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q psy11928 51 ------------YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN 118 (184)
Q Consensus 51 ------------~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~ 118 (184)
..++.++++.+|+.. .+ +++++|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~-~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~ 205 (552)
T TIGR03719 128 QEIIDAADAWDLDRKLEIAMDALRCPP-WD-ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ 205 (552)
T ss_pred HHHHHhcCcchhHHHHHHHHhhCCCCc-cc-CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHH
Confidence 123455677888853 33 5899999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 119 EYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 119 ~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
+++.|||+||||++++..+||++++|++|++..+.|+++++.+
T Consensus 206 ~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 206 EYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred hCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9888999999999999999999999999998767788776544
No 149
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.97 E-value=7.4e-31 Score=209.65 Aligned_cols=156 Identities=22% Similarity=0.270 Sum_probs=120.1
Q ss_pred cccCcccCCceeEEecCC--------------------eEEEEEecCCCCCCCccCCHHHHHH----HhcC----CCHHH
Q psy11928 2 YAHCDLQPQQGELKKNHR--------------------LRIGRFDQHSGEHLTAEETPAEYLQ----RLFN----LPYEK 53 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~--------------------~~ig~v~q~~~~~l~~~~~~~~~~~----~~~~----~~~~~ 53 (184)
+|+|+.+|++|+|.+++. ..++|++|++...+....++.+.+. .... ...++
T Consensus 48 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (253)
T TIGR02323 48 CLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAA 127 (253)
T ss_pred HHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHH
Confidence 689999999999987531 2489999986422222223222221 1111 11245
Q ss_pred HHHHHhhCCCCc-ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEe
Q psy11928 54 ARKQLGTFGLAG-HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS 128 (184)
Q Consensus 54 ~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivs 128 (184)
+.++++.+|+.. ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.+++.+.+.+.+. +.|||+||
T Consensus 128 ~~~~l~~l~l~~~~~~-~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vs 206 (253)
T TIGR02323 128 AHDWLEEVEIDPTRID-DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT 206 (253)
T ss_pred HHHHHHHcCCChhhhh-cCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 678899999963 444 589999999999999999999999999999999999999999999988643 67999999
Q ss_pred cCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 129 HDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|+++++..+||++++|++|+++. .++.+++
T Consensus 207 H~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~ 236 (253)
T TIGR02323 207 HDLGVARLLAQRLLVMQQGRVVE-SGLTDQV 236 (253)
T ss_pred CCHHHHHHhcCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999975 4444433
No 150
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=7.5e-32 Score=198.70 Aligned_cols=153 Identities=32% Similarity=0.394 Sum_probs=125.0
Q ss_pred CcccCCceeEEec-----------------CCeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCH----HHHHHHHhhC
Q psy11928 5 CDLQPQQGELKKN-----------------HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EKARKQLGTF 61 (184)
Q Consensus 5 G~~~p~~G~i~~~-----------------~~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 61 (184)
=+..|.+|+..+. .|+++|+|||.+. +.+++-+|+.+......+.++ .++.++++++
T Consensus 50 lle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrl 129 (242)
T COG4161 50 LLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRL 129 (242)
T ss_pred HHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHh
Confidence 3567889988642 1567999999875 555555555554444444443 4567899999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 138 (184)
.+.++.+ +.|-.|||||+|||+|||||+.+|++|++||||++|||+-..++.++|+++ |.|=++|||..+++.+.+
T Consensus 130 rl~~~ad-r~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~a 208 (242)
T COG4161 130 RLKPYAD-RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTA 208 (242)
T ss_pred ccccccc-cCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhh
Confidence 9998776 589999999999999999999999999999999999999999999999876 679999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+++.|++|+|++ .|+.+-+
T Consensus 209 s~vvyme~g~ive-~g~a~~f 228 (242)
T COG4161 209 SRVVYMENGHIVE-QGDASCF 228 (242)
T ss_pred hheEeeecCeeEe-ecchhhc
Confidence 9999999999987 4444333
No 151
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=8.8e-31 Score=227.59 Aligned_cols=147 Identities=23% Similarity=0.236 Sum_probs=121.1
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c---C-CC----HHHHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F---N-LP----YEKARKQL 58 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~---~-~~----~~~~~~~l 58 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....|+.+++... . . .. .+++.+++
T Consensus 49 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (501)
T PRK10762 49 VLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELN--LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLL 126 (501)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchh--ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHH
Confidence 68999999999998753 235999999863 34455666554321 0 1 11 23567889
Q ss_pred hhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928 59 GTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR 135 (184)
Q Consensus 59 ~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~ 135 (184)
+.+|+.+..+ +++++|||||||||+|||||+.+|++|||||||++||+.++.++.+.+.+. +.|||+||||++++.
T Consensus 127 ~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~ 205 (501)
T PRK10762 127 ARLNLRFSSD-KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIF 205 (501)
T ss_pred HHcCCCCCcc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 9999986654 589999999999999999999999999999999999999999999888654 679999999999999
Q ss_pred hhcCeEEEEeCCeEEE
Q psy11928 136 DTECTLWVIENQTIEE 151 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~ 151 (184)
.+||++++|++|+++.
T Consensus 206 ~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 206 EICDDVTVFRDGQFIA 221 (501)
T ss_pred HhCCEEEEEeCCEEEE
Confidence 9999999999999865
No 152
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=1.1e-30 Score=207.15 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=119.3
Q ss_pred cccCcc--cCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcC-------CC----HHH
Q psy11928 2 YAHCDL--QPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFN-------LP----YEK 53 (184)
Q Consensus 2 ~~~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~-------~~----~~~ 53 (184)
+|+|+. +|++|+|.+++ +..++|++|++. +....++.+++.. ... .. .++
T Consensus 45 ~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (243)
T TIGR01978 45 TIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKL 122 (243)
T ss_pred HHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHH
Confidence 578985 79999998754 123899999874 3344455444321 100 11 234
Q ss_pred HHHHHhhCCCCccccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928 54 ARKQLGTFGLAGHAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH 129 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH 129 (184)
+.++++.+|+.....++++. +||||||||++|||||+.+|+++||||||++||+.++..+.+.|.+. +.|||+|||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH 202 (243)
T TIGR01978 123 LKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH 202 (243)
T ss_pred HHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEe
Confidence 67789999997433334676 59999999999999999999999999999999999999999999765 579999999
Q ss_pred CHHHHHhh-cCeEEEEeCCeEEEecCChhH
Q psy11928 130 DERLIRDT-ECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 130 d~~~~~~~-~~~i~~l~~g~i~~~~~~~~~ 158 (184)
|++++..+ ||++++|++|++.. .++.+.
T Consensus 203 ~~~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 231 (243)
T TIGR01978 203 YQRLLNYIKPDYVHVLLDGRIVK-SGDVEL 231 (243)
T ss_pred cHHHHHhhcCCeEEEEeCCEEEE-ecCHHH
Confidence 99999998 89999999999864 555543
No 153
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-30 Score=206.60 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=123.8
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ..... .+++.++++.+|+..
T Consensus 44 ~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 121 (235)
T cd03299 44 TIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYA--LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH 121 (235)
T ss_pred HHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 68999999999998754 346999999864 3333455554432 11111 234677899999976
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||+||++||||++.+|++++|||||+|||+.+++++.+.+++. +.|+|++||+++++..+||++
T Consensus 122 ~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i 200 (235)
T cd03299 122 LLN-RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKV 200 (235)
T ss_pred HHh-cCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 665 589999999999999999999999999999999999999999999988753 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|++++ .++.+..
T Consensus 201 ~~l~~G~i~~-~~~~~~~ 217 (235)
T cd03299 201 AIMLNGKLIQ-VGKPEEV 217 (235)
T ss_pred EEEECCEEEE-ecCHHHH
Confidence 9999999975 4554433
No 154
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=8.5e-31 Score=228.56 Aligned_cols=155 Identities=28% Similarity=0.363 Sum_probs=123.5
Q ss_pred cccCcccCCceeEEec-C-----------------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCC----HHHHHHH
Q psy11928 2 YAHCDLQPQQGELKKN-H-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLP----YEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~-~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~----~~~~~~~ 57 (184)
+|+|+++|++|+|.++ + +.++||+||++. +....++.+++.... ... .+++.++
T Consensus 329 ~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 406 (520)
T TIGR03269 329 IIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAVIT 406 (520)
T ss_pred HHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5899999999999873 2 135999999863 344556666553211 111 2346778
Q ss_pred HhhCCCCcc----cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11928 58 LGTFGLAGH----AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSH 129 (184)
Q Consensus 58 l~~~~l~~~----~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsH 129 (184)
++.+|+... ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.+ .+.|||+|||
T Consensus 407 l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH 486 (520)
T TIGR03269 407 LKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486 (520)
T ss_pred HHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 999999741 23468999999999999999999999999999999999999999999999854 4689999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++..+||++++|++|+++. .++.++.
T Consensus 487 d~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 515 (520)
T TIGR03269 487 DMDFVLDVCDRAALMRDGKIVK-IGDPEEI 515 (520)
T ss_pred CHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999865 4555444
No 155
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.9e-31 Score=212.13 Aligned_cols=155 Identities=26% Similarity=0.384 Sum_probs=124.1
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~ 61 (184)
+|+|+++|++|+|.+++ +..|+|+||++...+. ..++.+++.. ..+.. .+++.++++.+
T Consensus 47 ~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (275)
T PRK13639 47 HFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAV 125 (275)
T ss_pred HHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 58999999999997653 2359999998631121 2355555432 11222 23567889999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 138 (184)
|+.+..+ +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.+.++ +.|||++|||++++..+|
T Consensus 126 ~L~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~ 204 (275)
T PRK13639 126 GMEGFEN-KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYA 204 (275)
T ss_pred CCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 9986654 589999999999999999999999999999999999999999999999764 679999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++|++|+++. .++.+++
T Consensus 205 d~i~~l~~G~i~~-~g~~~~~ 224 (275)
T PRK13639 205 DKVYVMSDGKIIK-EGTPKEV 224 (275)
T ss_pred CEEEEEECCEEEE-eCCHHHH
Confidence 9999999999875 5555544
No 156
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.97 E-value=2.3e-30 Score=207.10 Aligned_cols=157 Identities=21% Similarity=0.259 Sum_probs=122.3
Q ss_pred cccCcccC----CceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC--CHHHHHHHHhhCCC
Q psy11928 2 YAHCDLQP----QQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL--PYEKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p----~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l 63 (184)
+|+|+.+| ++|+|.+++ ++.++|+||++...+.+..++.++... ..+. ..+++.++++.+++
T Consensus 48 ~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 127 (254)
T PRK10418 48 AALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL 127 (254)
T ss_pred HHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCC
Confidence 68999999 999998754 246999999863112233344333221 1121 23467888999999
Q ss_pred Ccc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928 64 AGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 64 ~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~ 137 (184)
... ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++. +.|||++||+++++..+
T Consensus 128 ~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~ 207 (254)
T PRK10418 128 ENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARL 207 (254)
T ss_pred CChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence 752 223589999999999999999999999999999999999999999999888653 67999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||+++++++|++.. .++.+++
T Consensus 208 ~d~v~~l~~G~i~~-~~~~~~~ 228 (254)
T PRK10418 208 ADDVAVMSHGRIVE-QGDVETL 228 (254)
T ss_pred CCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999975 4555444
No 157
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.3e-30 Score=206.35 Aligned_cols=144 Identities=22% Similarity=0.271 Sum_probs=117.5
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 78 (184)
+|+|+++|++|+|.+++. .++|++|++. .....++.+++... .........++++.+++....+ +++++||||
T Consensus 44 ~L~G~~~p~~G~i~~~g~-~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgG 119 (246)
T cd03237 44 MLAGVLKPDEGDIEIELD-TVSYKPQYIK--ADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-REVPELSGG 119 (246)
T ss_pred HHhCCCcCCCCeEEECCc-eEEEeccccc--CCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-CChhhCCHH
Confidence 589999999999998764 7999999864 22234555554321 1111234567899999976554 589999999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q psy11928 79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTI 149 (184)
Q Consensus 79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i 149 (184)
|||||+|||||+.+|+++||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++++++..
T Consensus 120 e~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 999999999999999999999999999999999999988764 68999999999999999999999976543
No 158
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.6e-31 Score=229.23 Aligned_cols=150 Identities=18% Similarity=0.237 Sum_probs=121.0
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHHhc-----------CC-C----HH
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQRLF-----------NL-P----YE 52 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~~~-----------~~-~----~~ 52 (184)
+|+|+.+|++|+|.+++ ++.+||+||++. ..+....++.+++.... +. . .+
T Consensus 308 ~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (510)
T PRK09700 308 CLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQR 387 (510)
T ss_pred HHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHH
Confidence 58999999999998754 135999999842 23444556665543210 10 1 13
Q ss_pred HHHHHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEe
Q psy11928 53 KARKQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVS 128 (184)
Q Consensus 53 ~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivs 128 (184)
++.++++.+|+. +..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||
T Consensus 388 ~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vs 466 (510)
T PRK09700 388 TAENQRELLALKCHSVN-QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS 466 (510)
T ss_pred HHHHHHHhcCCCCCCcc-CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 467889999996 4454 589999999999999999999999999999999999999999999998754 78999999
Q ss_pred cCHHHHHhhcCeEEEEeCCeEEEe
Q psy11928 129 HDERLIRDTECTLWVIENQTIEEI 152 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~g~i~~~ 152 (184)
||++++..+||+++++++|++...
T Consensus 467 Hd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 467 SELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred CCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999998653
No 159
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=1.3e-30 Score=206.45 Aligned_cols=148 Identities=24% Similarity=0.335 Sum_probs=118.1
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ +..++|++|+.. .+....++.+++. ...+... +++.++++.+|+.
T Consensus 66 ~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 144 (236)
T cd03267 66 ILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT-QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE 144 (236)
T ss_pred HHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcc-ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 58999999999998753 236899985421 2333445555432 1222222 3456788999997
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~ 140 (184)
+..+ +++.+||||||||++||+|++.+|+++||||||++||+.++..+.+.|.++ +.|||+|||+++++..+||+
T Consensus 145 ~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 223 (236)
T cd03267 145 ELLD-TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR 223 (236)
T ss_pred hHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence 6554 589999999999999999999999999999999999999999999999764 57999999999999999999
Q ss_pred EEEEeCCeEEE
Q psy11928 141 LWVIENQTIEE 151 (184)
Q Consensus 141 i~~l~~g~i~~ 151 (184)
++++++|++..
T Consensus 224 i~~l~~G~i~~ 234 (236)
T cd03267 224 VLVIDKGRLLY 234 (236)
T ss_pred EEEEeCCEEEe
Confidence 99999999864
No 160
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1e-30 Score=211.39 Aligned_cols=153 Identities=26% Similarity=0.341 Sum_probs=121.0
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~ 62 (184)
+|+|+++|++|+|.+++ +..+||+||++...+ ...++.+++.. ..... .+++.++++.+|
T Consensus 47 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g 125 (274)
T PRK13644 47 HLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIG 125 (274)
T ss_pred HHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC
Confidence 58999999999997653 235999999873111 23455555432 11222 234677899999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~ 139 (184)
+....+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.++++ +.|||++|||++++. .||
T Consensus 126 l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d 203 (274)
T PRK13644 126 LEKYRH-RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DAD 203 (274)
T ss_pred CHHHhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCC
Confidence 986655 589999999999999999999999999999999999999999999998653 679999999999995 599
Q ss_pred eEEEEeCCeEEEecCChhH
Q psy11928 140 TLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~ 158 (184)
+++++++|+++. .++.++
T Consensus 204 ~v~~l~~G~i~~-~g~~~~ 221 (274)
T PRK13644 204 RIIVMDRGKIVL-EGEPEN 221 (274)
T ss_pred EEEEEECCEEEE-ECCHHH
Confidence 999999999875 455444
No 161
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=211.62 Aligned_cols=153 Identities=25% Similarity=0.337 Sum_probs=122.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l 63 (184)
+|+|+.+|++|+|.+++ ++.+||+||++. .+....++.+++.. ..+... +++.++++.+|+
T Consensus 52 ~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL 130 (279)
T PRK13635 52 LLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGM 130 (279)
T ss_pred HHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCC
Confidence 58999999999998754 236999999862 11223455555432 112222 346788999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~ 139 (184)
..... +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||++|||++++.. ||
T Consensus 131 ~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d 208 (279)
T PRK13635 131 EDFLN-REPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-AD 208 (279)
T ss_pred hhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CC
Confidence 86665 589999999999999999999999999999999999999999999998753 6799999999999975 99
Q ss_pred eEEEEeCCeEEEecCChhH
Q psy11928 140 TLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~ 158 (184)
+++++++|++.. .++.++
T Consensus 209 ~i~~l~~G~i~~-~g~~~~ 226 (279)
T PRK13635 209 RVIVMNKGEILE-EGTPEE 226 (279)
T ss_pred EEEEEECCEEEE-ECCHHH
Confidence 999999999865 455443
No 162
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=204.57 Aligned_cols=134 Identities=24% Similarity=0.269 Sum_probs=106.1
Q ss_pred CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCCCCcc---cccccccCCChhHHHHHHHHHH
Q psy11928 19 RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFGLAGH---AHTIKMKDLSGGQKARVALAEL 88 (184)
Q Consensus 19 ~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~lara 88 (184)
|++||+|||.|+|+ + +++++++. ..++... +.+++.|+...|.+. ..++....||||||||++||||
T Consensus 87 Rr~vGMVFQkPnPF--p-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 87 RRRVGMVFQKPNPF--P-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHheeeccCCCCC--C-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 67899999998632 1 44444433 2222221 335566777766532 2234678999999999999999
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCC
Q psy11928 89 TLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTLWVIENQTIEEIDGD 155 (184)
Q Consensus 89 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~ 155 (184)
|+.+|+|||||||||+|||.+...+.+++.+++ -|||+|||++.-+.+++|+.+++..|++++++.+
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence 999999999999999999999999999998874 5999999999999999999999999999987543
No 163
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1e-30 Score=215.57 Aligned_cols=149 Identities=24% Similarity=0.326 Sum_probs=127.0
Q ss_pred ccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c--CCC----HHHHHHHHh
Q psy11928 3 AHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F--NLP----YEKARKQLG 59 (184)
Q Consensus 3 ~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~--~~~----~~~~~~~l~ 59 (184)
|.++++++ |+|.+.+ ++++-.|||+|+..+++.+|+.+.+... + +.+ .+++.+.|+
T Consensus 333 llrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~ 411 (534)
T COG4172 333 LLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALE 411 (534)
T ss_pred HHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHH
Confidence 45666555 9998653 5679999999988899999987766431 1 122 245778899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~ 135 (184)
.+|++....+++|.++|||||||++||||++.+|++++||||||+||...+.++.+++++ ++.+-+++|||+..+.
T Consensus 412 EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vvr 491 (534)
T COG4172 412 EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVR 491 (534)
T ss_pred HcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence 999987766789999999999999999999999999999999999999999999999975 4679999999999999
Q ss_pred hhcCeEEEEeCCeEEEe
Q psy11928 136 DTECTLWVIENQTIEEI 152 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~ 152 (184)
.+|+++++|++|+|++.
T Consensus 492 Al~~~viVm~~GkiVE~ 508 (534)
T COG4172 492 ALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred HhhceEEEEeCCEEeee
Confidence 99999999999999984
No 164
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=205.63 Aligned_cols=155 Identities=23% Similarity=0.207 Sum_probs=121.3
Q ss_pred cccCcccC-----CceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC--C----HHHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL--P----YEKARK 56 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~--~----~~~~~~ 56 (184)
+|+|+.+| ++|+|.+++ +..+||+||++. +....++.+++.. .... . .+++.+
T Consensus 48 ~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 125 (250)
T PRK14247 48 VFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRW 125 (250)
T ss_pred HHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 57899874 799998653 246999999874 2334555555432 1111 1 234677
Q ss_pred HHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928 57 QLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~ 131 (184)
+++.+|+... ..++++.+||||||||++|||||+.+|+++||||||++||+.++.++.+.|.+. +.|+|++|||+
T Consensus 126 ~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14247 126 ALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP 205 (250)
T ss_pred HHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 8999998531 224589999999999999999999999999999999999999999999999764 57999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++..+||++++|++|++.. .++.+++
T Consensus 206 ~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 232 (250)
T PRK14247 206 QQAARISDYVAFLYKGQIVE-WGPTREV 232 (250)
T ss_pred HHHHHhcCEEEEEECCeEEE-ECCHHHH
Confidence 99999999999999999865 4555444
No 165
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.7e-31 Score=232.43 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=122.6
Q ss_pred cccCcccCCceeEEecC-------------------------CeEEEEEecCCCCCCCccCCHHHHHHH---h-cCCC--
Q psy11928 2 YAHCDLQPQQGELKKNH-------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR---L-FNLP-- 50 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~-~~~~-- 50 (184)
.|+|+++|++|+|.+++ +..|||+||++...+.+..++.+++.. . .+..
T Consensus 61 ~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~ 140 (623)
T PRK10261 61 ALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASRE 140 (623)
T ss_pred HHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHH
Confidence 58999999999987532 135999999873123344455554432 1 1222
Q ss_pred --HHHHHHHHhhCCCCc--ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----Cc
Q psy11928 51 --YEKARKQLGTFGLAG--HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KG 122 (184)
Q Consensus 51 --~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~ 122 (184)
.+++.++++.+|+.+ ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++++++ +.
T Consensus 141 ~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~ 220 (623)
T PRK10261 141 EAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSM 220 (623)
T ss_pred HHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCC
Confidence 245778899999963 1234589999999999999999999999999999999999999999999888653 67
Q ss_pred EEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 123 GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 123 tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|||+||||++++..+||+|++|++|++++ .++..++
T Consensus 221 tvi~itHdl~~~~~~adri~vl~~G~i~~-~g~~~~~ 256 (623)
T PRK10261 221 GVIFITHDMGVVAEIADRVLVMYQGEAVE-TGSVEQI 256 (623)
T ss_pred EEEEEcCCHHHHHHhCCEEEEeeCCeecc-cCCHHHh
Confidence 99999999999999999999999999975 5554443
No 166
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.2e-30 Score=204.64 Aligned_cols=153 Identities=25% Similarity=0.312 Sum_probs=123.6
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ +..++|++|++. +....++.+++... .+.. .+++.++++.+|+..
T Consensus 45 ~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 122 (232)
T cd03300 45 LIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYA--LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG 122 (232)
T ss_pred HHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 58999999999998753 346999999874 33344555554321 1111 235667899999986
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+||+||+||++||||++.+|+++||||||+|||+.++.++.+.+.++ +.|||++||+++++...||++
T Consensus 123 ~~~-~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i 201 (232)
T cd03300 123 YAN-RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI 201 (232)
T ss_pred hhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE
Confidence 554 589999999999999999999999999999999999999999999988653 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhH
Q psy11928 142 WVIENQTIEEIDGDFDD 158 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~ 158 (184)
+++++|++.. .++..+
T Consensus 202 ~~l~~G~~~~-~~~~~~ 217 (232)
T cd03300 202 AVMNKGKIQQ-IGTPEE 217 (232)
T ss_pred EEEECCEEEe-cCCHHH
Confidence 9999999975 444433
No 167
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.1e-31 Score=207.25 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=121.0
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC--CHHHHHHHHhhC-CC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL--PYEKARKQLGTF-GL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~-~l 63 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +....++.+++... ... ..+.+.++++.+ ++
T Consensus 50 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l 127 (237)
T PRK11614 50 TLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR--VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL 127 (237)
T ss_pred HHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcc--cCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHH
Confidence 58999999999998653 235999999864 33445666554321 111 122355667777 46
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
.+..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++. +.|||++|||++++..+||+
T Consensus 128 ~~~~~-~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 128 HERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred HHHHh-CchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCE
Confidence 54444 479999999999999999999999999999999999999999999988653 67999999999999999999
Q ss_pred EEEEeCCeEEEecCChhHH
Q psy11928 141 LWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 141 i~~l~~g~i~~~~~~~~~~ 159 (184)
+++|++|+++. .++.++.
T Consensus 207 i~~l~~G~i~~-~~~~~~~ 224 (237)
T PRK11614 207 GYVLENGHVVL-EDTGDAL 224 (237)
T ss_pred EEEEeCCEEEe-eCCHHHH
Confidence 99999999975 5666554
No 168
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.6e-30 Score=227.31 Aligned_cols=156 Identities=23% Similarity=0.305 Sum_probs=121.8
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC--CC----HHHHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN--LP----YEKARKQL 58 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~--~~----~~~~~~~l 58 (184)
+|+|++ |++|+|.+++ +..+||+||++...+....++.+++... +. .. .+++.+++
T Consensus 331 ~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l 409 (529)
T PRK15134 331 ALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM 409 (529)
T ss_pred HHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHH
Confidence 578998 5899998754 2359999998621233444555544321 11 11 23567889
Q ss_pred hhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHH
Q psy11928 59 GTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLI 134 (184)
Q Consensus 59 ~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~ 134 (184)
+.+|+.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|.+ .+.|||+||||++++
T Consensus 410 ~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~ 489 (529)
T PRK15134 410 EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVV 489 (529)
T ss_pred HHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 9999963223458999999999999999999999999999999999999999999999874 367999999999999
Q ss_pred HhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 135 RDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 135 ~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
..+||++++|++|++++ .++.+++
T Consensus 490 ~~~~d~i~~l~~G~i~~-~~~~~~~ 513 (529)
T PRK15134 490 RALCHQVIVLRQGEVVE-QGDCERV 513 (529)
T ss_pred HHhcCeEEEEECCEEEE-EcCHHHH
Confidence 99999999999999975 4554443
No 169
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-30 Score=209.89 Aligned_cols=154 Identities=23% Similarity=0.322 Sum_probs=121.9
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~ 62 (184)
.|+|+++|++|+|.+++ ++.+||+||++...+. ..++.+.+.. ..+.. .+++.++++.+|
T Consensus 55 ~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 133 (280)
T PRK13633 55 HMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVG 133 (280)
T ss_pred HHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCC
Confidence 58999999999998653 2359999998731122 2344444322 11222 244678899999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhc
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~ 138 (184)
+....+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||++++.. |
T Consensus 134 L~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~ 211 (280)
T PRK13633 134 MYEYRR-HAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-A 211 (280)
T ss_pred CHhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-C
Confidence 986654 589999999999999999999999999999999999999999999998753 6799999999999986 9
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++|++|++.. .++.+++
T Consensus 212 d~v~~l~~G~i~~-~g~~~~~ 231 (280)
T PRK13633 212 DRIIVMDSGKVVM-EGTPKEI 231 (280)
T ss_pred CEEEEEECCEEEE-ecCHHHH
Confidence 9999999999875 4555443
No 170
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=225.95 Aligned_cols=153 Identities=25% Similarity=0.243 Sum_probs=123.5
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cCC---C----HHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FNL---P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~~---~----~~~~~ 55 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++... ++. . .+++.
T Consensus 50 ~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (510)
T PRK09700 50 VLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA 127 (510)
T ss_pred HHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeeccc--ccCCCcHHHHhhhccccccccccccccCHHHHHHHHH
Confidence 68999999999998753 135999999864 33444555554321 111 1 23567
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER 132 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~ 132 (184)
++++.+|+....+ +++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++. +.|||+||||++
T Consensus 128 ~~l~~~gl~~~~~-~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~ 206 (510)
T PRK09700 128 MMLLRVGLKVDLD-EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA 206 (510)
T ss_pred HHHHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 7899999986554 589999999999999999999999999999999999999999999998754 679999999999
Q ss_pred HHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 133 LIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
++..+||++++|++|+++. .+++++
T Consensus 207 ~~~~~~d~v~~l~~G~i~~-~g~~~~ 231 (510)
T PRK09700 207 EIRRICDRYTVMKDGSSVC-SGMVSD 231 (510)
T ss_pred HHHHhCCEEEEEECCEEee-ecchhh
Confidence 9999999999999999864 555544
No 171
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.97 E-value=2.5e-30 Score=208.45 Aligned_cols=154 Identities=25% Similarity=0.310 Sum_probs=121.0
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~ 59 (184)
+|+|+.+|++|+|.+++ +..++|+||++...+....++.+++.. ..... ..++.++++
T Consensus 57 ~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 136 (268)
T PRK10419 57 LLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLR 136 (268)
T ss_pred HHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 68999999999998653 236999999863223334455544321 11111 235678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+.....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|+|++||+++++.
T Consensus 137 ~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~ 216 (268)
T PRK10419 137 AVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVE 216 (268)
T ss_pred HcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHH
Confidence 9999632234589999999999999999999999999999999999999999998888643 679999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCCh
Q psy11928 136 DTECTLWVIENQTIEEIDGDF 156 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~ 156 (184)
.+||++++|++|++.+ .++.
T Consensus 217 ~~~d~i~~l~~G~i~~-~g~~ 236 (268)
T PRK10419 217 RFCQRVMVMDNGQIVE-TQPV 236 (268)
T ss_pred HhCCEEEEEECCEEee-eCCh
Confidence 9999999999999865 4443
No 172
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=226.54 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=123.4
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHHh---c----C---CC---HHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQRL---F----N---LP---YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~~---~----~---~~---~~~~~ 55 (184)
+|+|+.+|++|+|.+++ +..++|+||++. ..+....++.+++... . + .. .+.+.
T Consensus 298 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (501)
T PRK11288 298 LLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENAD 377 (501)
T ss_pred HHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHH
Confidence 58999999999998753 135899999862 2234445555553211 0 0 01 13467
Q ss_pred HHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928 56 KQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE 131 (184)
Q Consensus 56 ~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 131 (184)
++++.+++. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..++++|.+ .+.|||+||||+
T Consensus 378 ~~l~~~~l~~~~~~-~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 456 (501)
T PRK11288 378 RFIRSLNIKTPSRE-QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456 (501)
T ss_pred HHHHhcCcccCCcc-CccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 889999994 4444 58999999999999999999999999999999999999999999998854 478999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
+++..+||+++++++|++.. .++.+++.
T Consensus 457 ~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 484 (501)
T PRK11288 457 PEVLGVADRIVVMREGRIAG-ELAREQAT 484 (501)
T ss_pred HHHHhhCCEEEEEECCEEEE-EEccccCC
Confidence 99999999999999999865 44444443
No 173
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=6.7e-30 Score=227.53 Aligned_cols=156 Identities=27% Similarity=0.479 Sum_probs=125.5
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHH---------------------------------HH---
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYL---------------------------------QR--- 45 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~---------------------------------~~--- 45 (184)
+|+|+++|++|+|.+++...+++++|.+... ...++.+++ ..
T Consensus 48 iiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (635)
T PRK11147 48 ILNGEVLLDDGRIIYEQDLIVARLQQDPPRN--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQE 125 (635)
T ss_pred HHcCCCCCCCeEEEeCCCCEEEEeccCCCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 6899999999999987766789998865211 111111110 00
Q ss_pred -hc---C-CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc
Q psy11928 46 -LF---N-LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY 120 (184)
Q Consensus 46 -~~---~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 120 (184)
.. . ....++.++++.+|+.. ++++++|||||||||+|||||+.+|++||||||||+||+.++.++.++|.++
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~ 202 (635)
T PRK11147 126 QLDHHNLWQLENRINEVLAQLGLDP---DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF 202 (635)
T ss_pred HHHhcCcccHHHHHHHHHHhCCCCC---CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC
Confidence 00 0 01345778899999962 3589999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHHH
Q psy11928 121 KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKE 162 (184)
Q Consensus 121 ~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~ 162 (184)
+.|||+||||++++..+|+++++|++|+++.+.|+++.|.+.
T Consensus 203 ~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 203 QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 889999999999999999999999999998778888776543
No 174
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-30 Score=224.22 Aligned_cols=147 Identities=23% Similarity=0.225 Sum_probs=120.7
Q ss_pred cccCcccC--CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c--C-CC----HHHHHHH
Q psy11928 2 YAHCDLQP--QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F--N-LP----YEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~p--~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~--~-~~----~~~~~~~ 57 (184)
+|+|+++| ++|+|.+++ +..+||+||++. +....++.+++... . . .. .+++.++
T Consensus 50 ~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 127 (506)
T PRK13549 50 VLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKL 127 (506)
T ss_pred HHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHH
Confidence 68999986 899998753 245999999863 33445665554321 1 1 11 2356788
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI 134 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 134 (184)
++.+|++...+ +++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++
T Consensus 128 l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 128 LAQLKLDINPA-TPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred HHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 99999976554 589999999999999999999999999999999999999999999998664 67999999999999
Q ss_pred HhhcCeEEEEeCCeEEE
Q psy11928 135 RDTECTLWVIENQTIEE 151 (184)
Q Consensus 135 ~~~~~~i~~l~~g~i~~ 151 (184)
..+||++++|++|+++.
T Consensus 207 ~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 207 KAISDTICVIRDGRHIG 223 (506)
T ss_pred HHhcCEEEEEECCEEee
Confidence 99999999999999865
No 175
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.1e-30 Score=222.90 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=122.5
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh----cC--CC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL----FN--LP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~----~~--~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++... .+ .. .+++.++++
T Consensus 43 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (491)
T PRK10982 43 CLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD 120 (491)
T ss_pred HHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHH
Confidence 58999999999998754 245999999874 33445555554321 11 11 134677899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+|++...+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|.+. +.|||+||||++++..
T Consensus 121 ~~~l~~~~~-~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~ 199 (491)
T PRK10982 121 ELDIDIDPR-AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ 199 (491)
T ss_pred HcCCCCCcc-CchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 999986654 589999999999999999999999999999999999999999999988664 6799999999999999
Q ss_pred hcCeEEEEeCCeEEEecCCh
Q psy11928 137 TECTLWVIENQTIEEIDGDF 156 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~ 156 (184)
+||++++|++|+++. .++.
T Consensus 200 ~~d~i~~l~~G~i~~-~~~~ 218 (491)
T PRK10982 200 LCDEITILRDGQWIA-TQPL 218 (491)
T ss_pred hCCEEEEEECCEEEe-ecCh
Confidence 999999999999875 4443
No 176
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=2.3e-30 Score=224.94 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=120.6
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHHh----c----C-CC----HHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQRL----F----N-LP----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~~----~----~-~~----~~~~~ 55 (184)
+|+|+.+|++|+|.+++ +..+||+||++. ..+....++.+++... . + .. .+++.
T Consensus 297 ~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
T PRK10762 297 VLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVS 376 (501)
T ss_pred HHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHH
Confidence 58999999999998754 135999999863 1234445665544310 0 0 11 23467
Q ss_pred HHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928 56 KQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE 131 (184)
Q Consensus 56 ~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~ 131 (184)
++++.+|+. ... ++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||+
T Consensus 377 ~~l~~~~l~~~~~-~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~ 455 (501)
T PRK10762 377 DFIRLFNIKTPSM-EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM 455 (501)
T ss_pred HHHHhcCCCCCCc-cCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 889999995 444 4689999999999999999999999999999999999999999999998764 57999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEE
Q psy11928 132 RLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~ 151 (184)
+++..+||++++|++|++..
T Consensus 456 ~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 456 PEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999864
No 177
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-30 Score=226.32 Aligned_cols=156 Identities=15% Similarity=0.230 Sum_probs=121.8
Q ss_pred cccCccc-CCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHH-----hcC---CC----HHHHH
Q psy11928 2 YAHCDLQ-PQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQR-----LFN---LP----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~-p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~-----~~~---~~----~~~~~ 55 (184)
+|+|+++ |++|+|.+++ +..+||++|++. ..+....++.+++.. ... .. .+++.
T Consensus 307 ~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 386 (506)
T PRK13549 307 CLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTIL 386 (506)
T ss_pred HHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHH
Confidence 5899998 5999998753 134999999852 123334555554421 111 11 13467
Q ss_pred HHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928 56 KQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE 131 (184)
Q Consensus 56 ~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 131 (184)
++++.+++. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+.++|.+ .+.|||++|||+
T Consensus 387 ~~l~~~~l~~~~~~-~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~ 465 (506)
T PRK13549 387 ESIQRLKVKTASPE-LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL 465 (506)
T ss_pred HHHHhcCccCCCcc-cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 889999996 3444 58999999999999999999999999999999999999999999988864 378999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++..+||++++|++|++.. .++.+++
T Consensus 466 ~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 492 (506)
T PRK13549 466 PEVLGLSDRVLVMHEGKLKG-DLINHNL 492 (506)
T ss_pred HHHHHhCCEEEEEECCEEEE-EeccccC
Confidence 99999999999999999864 4444444
No 178
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.5e-30 Score=208.56 Aligned_cols=154 Identities=23% Similarity=0.279 Sum_probs=121.5
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l 63 (184)
.|+|+++|++|+|.+++ +..+||+||++.. +....++.+++.. ..+... +++.++++.+|+
T Consensus 52 ~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l 130 (277)
T PRK13642 52 LIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDN-QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNM 130 (277)
T ss_pred HHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHH-hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 58999999999998753 3469999998631 1223355554432 112222 345678899999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~ 139 (184)
....+ +++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++. +.|||++|||++++. .||
T Consensus 131 ~~~~~-~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d 208 (277)
T PRK13642 131 LDFKT-REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSD 208 (277)
T ss_pred HhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCC
Confidence 76554 589999999999999999999999999999999999999999999998643 679999999999997 599
Q ss_pred eEEEEeCCeEEEecCChhHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++|++|++++ .++.+++
T Consensus 209 ~i~~l~~G~i~~-~g~~~~~ 227 (277)
T PRK13642 209 RILVMKAGEIIK-EAAPSEL 227 (277)
T ss_pred EEEEEECCEEEE-eCCHHHH
Confidence 999999999875 4555443
No 179
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-30 Score=205.36 Aligned_cols=153 Identities=19% Similarity=0.176 Sum_probs=119.7
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARK 56 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~ 56 (184)
+|+|+.+| ++|+|.+++ +..+||+||++. +.. .++.+++.. ..+... +++.+
T Consensus 57 ~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 133 (258)
T PRK14268 57 CLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVEN 133 (258)
T ss_pred HHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 57898875 899997642 235999999874 222 455555432 122222 24667
Q ss_pred HHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 57 QLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 57 ~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
+++.+++. ... ++++.+|||||+|||+|||||+.+|+++||||||+|||+.++..+.+.|++. +.|||+||||
T Consensus 134 ~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~ 212 (258)
T PRK14268 134 ALRSAALWDETSDRL-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212 (258)
T ss_pred HHHHcCCCcchhhhh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECC
Confidence 88888884 223 3589999999999999999999999999999999999999999999999765 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||++++|++|++.. .++.+++
T Consensus 213 ~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 240 (258)
T PRK14268 213 MQQAARISDYTGFFLMGELIE-FGQTRQI 240 (258)
T ss_pred HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999975 4554443
No 180
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=5.4e-30 Score=222.54 Aligned_cols=149 Identities=23% Similarity=0.245 Sum_probs=120.2
Q ss_pred cccCcccC--CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c--C--CC----HHHHHH
Q psy11928 2 YAHCDLQP--QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F--N--LP----YEKARK 56 (184)
Q Consensus 2 ~~~G~~~p--~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~--~--~~----~~~~~~ 56 (184)
+|+|+.+| ++|+|.+++ +..+||+||++. +....++.+++... . . .. .+++.+
T Consensus 46 ~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (500)
T TIGR02633 46 ILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELT--LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKN 123 (500)
T ss_pred HHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccc--cCCCCcHHHHHHhhccccccccccCHHHHHHHHHH
Confidence 58899987 799998754 235999999874 33445555554321 1 0 11 234678
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL 133 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~ 133 (184)
+++.+|+.....++++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++ +.|||+||||+++
T Consensus 124 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~ 203 (500)
T TIGR02633 124 LLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE 203 (500)
T ss_pred HHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 8999999765434579999999999999999999999999999999999999999999998653 6799999999999
Q ss_pred HHhhcCeEEEEeCCeEEEe
Q psy11928 134 IRDTECTLWVIENQTIEEI 152 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i~~~ 152 (184)
+..+||++++|++|+++..
T Consensus 204 ~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 204 VKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHhCCEEEEEeCCeEeee
Confidence 9999999999999998653
No 181
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.7e-30 Score=226.30 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=119.6
Q ss_pred cccCcccCCceeEEecCC------------eEEEEEecCCC-CCCCccCCHHHHHHH-----h-c--CC--CHHHHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNHR------------LRIGRFDQHSG-EHLTAEETPAEYLQR-----L-F--NL--PYEKARKQL 58 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~------------~~ig~v~q~~~-~~l~~~~~~~~~~~~-----~-~--~~--~~~~~~~~l 58 (184)
+|+|+.+|++|+|.+++. ..++|+||++. ..+....++.+++.. . . .. ..+.+.+++
T Consensus 308 ~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 387 (510)
T PRK15439 308 TLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYR 387 (510)
T ss_pred HHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHH
Confidence 589999999999987541 35999999752 123344455444321 0 0 11 123467889
Q ss_pred hhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928 59 GTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI 134 (184)
Q Consensus 59 ~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 134 (184)
+.+|+. ...+ +++++|||||||||+||||++.+|++|||||||+|||+.+++.+.+.|+++ +.|||+||||++++
T Consensus 388 ~~~~l~~~~~~-~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i 466 (510)
T PRK15439 388 RALNIKFNHAE-QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEI 466 (510)
T ss_pred HHcCCCCCCcc-CccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 999996 4554 589999999999999999999999999999999999999999999998764 78999999999999
Q ss_pred HhhcCeEEEEeCCeEEE
Q psy11928 135 RDTECTLWVIENQTIEE 151 (184)
Q Consensus 135 ~~~~~~i~~l~~g~i~~ 151 (184)
..+||+++++++|+++.
T Consensus 467 ~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 467 EQMADRVLVMHQGEISG 483 (510)
T ss_pred HHhCCEEEEEECCEEEE
Confidence 99999999999999875
No 182
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-30 Score=208.50 Aligned_cols=154 Identities=25% Similarity=0.275 Sum_probs=121.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l 63 (184)
+|+|+++|++|+|.+++ ++.++|+||++.. +....++.+++.. ..... .+++.++++.+|+
T Consensus 54 ~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 132 (269)
T PRK13648 54 LMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDN-QFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM 132 (269)
T ss_pred HHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHH-hcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999998754 2359999998731 2223344433321 11122 2346678999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~ 139 (184)
.+..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.+. +.|||+|||+++++.. ||
T Consensus 133 ~~~~~-~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d 210 (269)
T PRK13648 133 LERAD-YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-AD 210 (269)
T ss_pred chhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CC
Confidence 76554 589999999999999999999999999999999999999999999988753 5799999999999986 99
Q ss_pred eEEEEeCCeEEEecCChhHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++|++|++.. .++.+++
T Consensus 211 ~i~~l~~G~i~~-~g~~~~~ 229 (269)
T PRK13648 211 HVIVMNKGTVYK-EGTPTEI 229 (269)
T ss_pred EEEEEECCEEEE-ecCHHHH
Confidence 999999999975 4555443
No 183
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5e-30 Score=205.02 Aligned_cols=153 Identities=23% Similarity=0.232 Sum_probs=119.5
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+++| ++|+|.+++ +..+||+||++. +. ..++.+++.. ..+. . .+.+.
T Consensus 52 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~ 128 (254)
T PRK14273 52 TLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN--PF-LMSIYDNISYGPKIHGTKDKKKLDEIVE 128 (254)
T ss_pred HHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc--cc-cCcHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 57899887 589997643 235999999874 22 2556555432 1111 1 23456
Q ss_pred HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
+.++.+++. +.. ++++++||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++ +.|||++||
T Consensus 129 ~~l~~~~l~~~l~~~~-~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH 207 (254)
T PRK14273 129 QSLKKSALWNEVKDKL-NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTH 207 (254)
T ss_pred HHHHHhCCchhhHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 778888873 233 3579999999999999999999999999999999999999999999999765 479999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++..+||++++|++|+++. .++..++
T Consensus 208 ~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 236 (254)
T PRK14273 208 NMQQAGRISDRTAFFLNGCIEE-ESSTDEL 236 (254)
T ss_pred CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999975 4554443
No 184
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.97 E-value=3.1e-30 Score=201.96 Aligned_cols=146 Identities=25% Similarity=0.347 Sum_probs=116.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~ 69 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +.. .++.+++..... ....++.++++.+++.+..+.
T Consensus 49 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~ 125 (220)
T cd03245 49 LLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNK 125 (220)
T ss_pred HHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 57899999999998754 236999999874 222 466666543211 234456677888888654432
Q ss_pred c----------cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhh
Q psy11928 70 I----------KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDT 137 (184)
Q Consensus 70 ~----------~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~ 137 (184)
. ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++. .|||++|||++++ .+
T Consensus 126 ~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~ 204 (220)
T cd03245 126 HPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DL 204 (220)
T ss_pred ccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-Hh
Confidence 1 246999999999999999999999999999999999999999999998753 6999999999987 68
Q ss_pred cCeEEEEeCCeEEE
Q psy11928 138 ECTLWVIENQTIEE 151 (184)
Q Consensus 138 ~~~i~~l~~g~i~~ 151 (184)
||+++++++|+++.
T Consensus 205 ~d~v~~l~~g~i~~ 218 (220)
T cd03245 205 VDRIIVMDSGRIVA 218 (220)
T ss_pred CCEEEEEeCCeEee
Confidence 99999999999864
No 185
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.97 E-value=6.3e-30 Score=202.66 Aligned_cols=154 Identities=27% Similarity=0.319 Sum_probs=123.8
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++... .+.. .+.+.++++.+++..
T Consensus 45 ~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 122 (237)
T TIGR00968 45 IIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG 122 (237)
T ss_pred HHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChh--hccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh
Confidence 58999999999998653 246999999874 33344555554321 1221 234677899999976
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+||+||+||++|||+++.+|+++||||||+|||+.++..+.+.|.+. +.|||++||+++++..+||++
T Consensus 123 ~~~-~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i 201 (237)
T TIGR00968 123 LGD-RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRI 201 (237)
T ss_pred Hhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEE
Confidence 554 588999999999999999999999999999999999999999999999753 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
+++++|++++ .++.+.+
T Consensus 202 ~~l~~g~i~~-~~~~~~~ 218 (237)
T TIGR00968 202 VVMSNGKIEQ-IGSPDEV 218 (237)
T ss_pred EEEECCEEEE-ecCHHHH
Confidence 9999999975 4555444
No 186
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3.1e-30 Score=200.78 Aligned_cols=157 Identities=25% Similarity=0.307 Sum_probs=128.7
Q ss_pred CcccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-----------c--CC--C---
Q psy11928 1 MYAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-----------F--NL--P--- 50 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-----------~--~~--~--- 50 (184)
++|+|.++|++|+|.+.+ +..|+..||.+. +...+|+.+++... + .. .
T Consensus 48 NlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r--lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~ 125 (250)
T COG0411 48 NLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR--LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE 125 (250)
T ss_pred eeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc--ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHH
Confidence 478999999999998764 346889999874 34455555543211 0 00 1
Q ss_pred -HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEE
Q psy11928 51 -YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVI 125 (184)
Q Consensus 51 -~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tii 125 (184)
.+++.++|+.+||.+.++ .+.++||+|||+|+.|||||+.+|++||||||.+||.+.....+.+.|.+. +.||+
T Consensus 126 ~~e~A~~~Le~vgL~~~a~-~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~til 204 (250)
T COG0411 126 ARERARELLEFVGLGELAD-RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTIL 204 (250)
T ss_pred HHHHHHHHHHHcCCchhhc-chhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 245778999999998776 589999999999999999999999999999999999999999999888653 57999
Q ss_pred EEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 126 ivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
+|.||+..+..+||||++|+.|++.. .|++++..+
T Consensus 205 lIEHdM~~Vm~l~dri~Vl~~G~~IA-eG~P~eV~~ 239 (250)
T COG0411 205 LIEHDMKLVMGLADRIVVLNYGEVIA-EGTPEEVRN 239 (250)
T ss_pred EEEeccHHHhhhccEEEeccCCcCcc-cCCHHHHhc
Confidence 99999999999999999999999864 788877654
No 187
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.3e-30 Score=204.50 Aligned_cols=154 Identities=23% Similarity=0.223 Sum_probs=120.3
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c-CCCH----HHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F-NLPY----EKAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~-~~~~----~~~~ 55 (184)
+|+|+++ |++|+|.+++ ++.++|+||++. +.. .++.+++... . ..+. +++.
T Consensus 58 ~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~ 134 (260)
T PRK10744 58 TFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVE 134 (260)
T ss_pred HHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHH
Confidence 5789886 5899997643 246999999874 223 4666554321 1 1221 3467
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++.. ...++++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|++. +.|||++||+
T Consensus 135 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~ 214 (260)
T PRK10744 135 WALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN 214 (260)
T ss_pred HHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 7888998742 1223578999999999999999999999999999999999999999999999765 4699999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||+++++++|+++. .++.+++
T Consensus 215 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 242 (260)
T PRK10744 215 MQQAARCSDYTAFMYLGELIE-FGNTDTI 242 (260)
T ss_pred HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999975 4554443
No 188
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.9e-30 Score=223.52 Aligned_cols=147 Identities=26% Similarity=0.239 Sum_probs=120.9
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-----cC-CC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-----FN-LP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-----~~-~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....++.+++... .+ .. .+++.++++
T Consensus 49 ~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (501)
T PRK11288 49 ILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELH--LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLE 126 (501)
T ss_pred HHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechh--ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHH
Confidence 68999999999998653 245999999863 33445555554321 11 11 235678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+|+....+ +++.+|||||||||+|||||+.+|+++||||||++||+.++.++.+.|.+. +.|||+||||++++..
T Consensus 127 ~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 127 HLGVDIDPD-TPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HcCCCCCcC-CchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999976554 589999999999999999999999999999999999999999999998754 6799999999999999
Q ss_pred hcCeEEEEeCCeEEE
Q psy11928 137 TECTLWVIENQTIEE 151 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~ 151 (184)
+||++++|++|+++.
T Consensus 206 ~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 206 LCDAITVFKDGRYVA 220 (501)
T ss_pred hCCEEEEEECCEEEe
Confidence 999999999999864
No 189
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-30 Score=204.08 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=119.5
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+.. |++|+|.+++ +..++|++|++. +.. .++.+++.. ..+. . .+++.
T Consensus 51 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 127 (253)
T PRK14242 51 CLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVE 127 (253)
T ss_pred HHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5778764 6899997653 236999999874 323 366555432 1111 1 23566
Q ss_pred HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+|+... ..++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|++. +.|||+||||
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~ 207 (253)
T PRK14242 128 RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207 (253)
T ss_pred HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEec
Confidence 78888888431 123578999999999999999999999999999999999999999999999765 4799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||++++|++|++.. .++.+++
T Consensus 208 ~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 235 (253)
T PRK14242 208 MQQAARVSDVTAFFYMGKLIE-VGPTEQI 235 (253)
T ss_pred HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999975 4554443
No 190
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=5.8e-30 Score=223.32 Aligned_cols=138 Identities=26% Similarity=0.319 Sum_probs=109.3
Q ss_pred EEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC
Q psy11928 21 RIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP 93 (184)
Q Consensus 21 ~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p 93 (184)
.+||+||++. .+....++.+++.. ..+.. .+++.++++.+|++...+ +++++|||||||||+|||||+.+|
T Consensus 110 ~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~iA~al~~~p 187 (520)
T TIGR03269 110 RIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT-HIARDLSGGEKQRVVLARQLAKEP 187 (520)
T ss_pred cEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-cCcccCCHHHHHHHHHHHHHhcCC
Confidence 5899999732 22233455444322 12222 245678899999976554 589999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 94 DVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 94 ~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|++.. .++++++..
T Consensus 188 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 258 (520)
T TIGR03269 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE-EGTPDEVVA 258 (520)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEee-ecCHHHHHH
Confidence 999999999999999999998887643 6799999999999999999999999999864 566665544
No 191
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.8e-30 Score=207.73 Aligned_cols=153 Identities=24% Similarity=0.300 Sum_probs=120.7
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l 63 (184)
+|+|+.+|++|+|.+++ +..+||+||++.. .....|+.+++.. ...... +.+.++++.+|+
T Consensus 54 ~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l 132 (271)
T PRK13632 54 ILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDN-QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM 132 (271)
T ss_pred HHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHH-hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 58999999999997653 3469999998621 1123455554432 112222 246778999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~ 139 (184)
....+ +++.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||++||+++++. .||
T Consensus 133 ~~~~~-~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d 210 (271)
T PRK13632 133 EDYLD-KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LAD 210 (271)
T ss_pred HHHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCC
Confidence 86555 589999999999999999999999999999999999999999999999764 379999999999996 799
Q ss_pred eEEEEeCCeEEEecCChhH
Q psy11928 140 TLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~ 158 (184)
++++|++|++.. .++.++
T Consensus 211 ~v~~l~~G~i~~-~g~~~~ 228 (271)
T PRK13632 211 KVIVFSEGKLIA-QGKPKE 228 (271)
T ss_pred EEEEEECCEEEE-ecCHHH
Confidence 999999999865 444444
No 192
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8e-30 Score=206.93 Aligned_cols=153 Identities=24% Similarity=0.299 Sum_probs=121.3
Q ss_pred cccCcccCCc---eeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhh
Q psy11928 2 YAHCDLQPQQ---GELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~---G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~ 60 (184)
+|+|+++|++ |+|.+++ +..+||+||++.. +....++.+++.. ..+... +++.++++.
T Consensus 52 ~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 130 (282)
T PRK13640 52 LINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDN-QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLAD 130 (282)
T ss_pred HHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHH-hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHH
Confidence 5899999998 8997653 2469999998731 1223455555431 222222 346778999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~ 136 (184)
+|+.+..+ +++.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||++||+++++.
T Consensus 131 ~~L~~~~~-~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~- 208 (282)
T PRK13640 131 VGMLDYID-SEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN- 208 (282)
T ss_pred CCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-
Confidence 99986655 589999999999999999999999999999999999999999999998653 679999999999995
Q ss_pred hcCeEEEEeCCeEEEecCChhH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
.||++++|++|++.. .++.++
T Consensus 209 ~~d~i~~l~~G~i~~-~g~~~~ 229 (282)
T PRK13640 209 MADQVLVLDDGKLLA-QGSPVE 229 (282)
T ss_pred hCCEEEEEECCEEEE-eCCHHH
Confidence 799999999999975 455444
No 193
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-30 Score=206.91 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=117.9
Q ss_pred cccCcccCCceeEEecCC--------eEEEEEecCCCCCCCccCCHHHHHHH--h-----cCC----CHHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNHR--------LRIGRFDQHSGEHLTAEETPAEYLQR--L-----FNL----PYEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~--------~~ig~v~q~~~~~l~~~~~~~~~~~~--~-----~~~----~~~~~~~~l~~~~ 62 (184)
+|+|+++|++|+|.+++. ..++|+||++........++.+.+.. . ... ..+++.++++.+|
T Consensus 52 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 131 (272)
T PRK15056 52 ALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVD 131 (272)
T ss_pred HHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcC
Confidence 589999999999987641 35999999864111111122222110 0 001 1234667889999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~ 139 (184)
+....+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||
T Consensus 132 l~~~~~-~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 132 MVEFRH-RQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred ChhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 976554 589999999999999999999999999999999999999999999999754 6799999999999999999
Q ss_pred eEEEEeCCeEEEecCChhH
Q psy11928 140 TLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~ 158 (184)
+++++ +|++.. .++.++
T Consensus 211 ~v~~~-~G~i~~-~g~~~~ 227 (272)
T PRK15056 211 YTVMV-KGTVLA-SGPTET 227 (272)
T ss_pred EEEEE-CCEEEe-ecCHHh
Confidence 99777 899865 455544
No 194
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.97 E-value=9.4e-30 Score=201.39 Aligned_cols=153 Identities=24% Similarity=0.350 Sum_probs=116.4
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHH---------HHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKAR---------KQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---------~~l~~ 60 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +. ..++.+++.... ......+. ++++.
T Consensus 47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (237)
T cd03252 47 LIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENV--LF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISE 123 (237)
T ss_pred HHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCch--hc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 58999999999998764 246999999874 22 246666553211 11222222 23333
Q ss_pred C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
+ ++..... +++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++|||++++.
T Consensus 124 l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~- 201 (237)
T cd03252 124 LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK- 201 (237)
T ss_pred Ccccccchhh-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-
Confidence 3 4443333 478999999999999999999999999999999999999999999999765 579999999999996
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
.||+++++++|+++. .++.+++.
T Consensus 202 ~~d~v~~l~~G~i~~-~~~~~~~~ 224 (237)
T cd03252 202 NADRIIVMEKGRIVE-QGSHDELL 224 (237)
T ss_pred hCCEEEEEECCEEEE-EcCHHHHH
Confidence 599999999999975 45555543
No 195
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.7e-30 Score=201.09 Aligned_cols=142 Identities=26% Similarity=0.364 Sum_probs=115.8
Q ss_pred cccCcccCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-CHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-PYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~~l~~~~~~ 69 (184)
+|+|+++|++|+|.+++ +..++|++|++. +....++.+++... .+. ..+.+.++++.+++....+
T Consensus 56 ~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~- 132 (214)
T PRK13543 56 VLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG--LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYED- 132 (214)
T ss_pred HHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcc--cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhcc-
Confidence 58999999999998764 235999999864 33444565554321 122 2345678899999986654
Q ss_pred ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
+++.+||||||||++|||+++.+|+++||||||++||+.+++.+.+.+.+. +.|+|++|||++++..+|++++++..
T Consensus 133 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 133 TLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 589999999999999999999999999999999999999999999998754 78999999999999999999998753
No 196
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.2e-30 Score=203.33 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=120.5
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC--CH----HHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL--PY----EKA 54 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~--~~----~~~ 54 (184)
+|+|+++| ++|+|.+++ +..++|+||++. +....++.+++... .+. .. .++
T Consensus 49 ~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 126 (253)
T PRK14267 49 TFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN--PFPHLTIYDNVAIGVKLNGLVKSKKELDERV 126 (253)
T ss_pred HHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc--cCCCCcHHHHHHHHHHhcCccCCHHHHHHHH
Confidence 58899987 499997643 235999999874 33344555554321 111 11 345
Q ss_pred HHHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 55 RKQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 55 ~~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
.++++.+|+.. ...++++.+||||||||++||||++.+|+++||||||+|||+.++.++.+.|.+. +.|||++||
T Consensus 127 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 206 (253)
T PRK14267 127 EWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206 (253)
T ss_pred HHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEEC
Confidence 67888888742 1223589999999999999999999999999999999999999999999999765 479999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++..+||++++|++|++.. .++.+++
T Consensus 207 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 235 (253)
T PRK14267 207 SPAQAARVSDYVAFLYLGKLIE-VGPTRKV 235 (253)
T ss_pred CHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999975 4555443
No 197
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-29 Score=202.25 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=127.9
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCHH----HHHHHHhhCCCCcccccccccC
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPYE----KARKQLGTFGLAGHAHTIKMKD 74 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~~----~~~~~l~~~~l~~~~~~~~~~~ 74 (184)
+|+|+++|++|+|.+++. +++++|.+. +....++.+++.. ..+...+ .+..+++.+++....+ +++.+
T Consensus 69 ~L~Gl~~p~~G~I~~~g~--~~~~~~~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~ 143 (264)
T PRK13546 69 IIGGSLSPTVGKVDRNGE--VSVIAISAG--LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIY-QPVKK 143 (264)
T ss_pred HHhCCcCCCceEEEECCE--EeEEecccC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCccc
Confidence 589999999999988763 567777653 2334455555432 1122222 2445778888876554 58999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~ 151 (184)
|||||+||++||||++.+|++|||||||+|||+.++..+.+.+.+. +.|||++||+++++..+|++++++++|++..
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999988654 6899999999999999999999999999975
Q ss_pred ecCChhHHHHHHHHHhhhhhcCc
Q psy11928 152 IDGDFDDYRKELLEALGEVVNNP 174 (184)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~ 174 (184)
.++.+++.......+.....+.
T Consensus 224 -~g~~~~~~~~~~~~~~~~~~~~ 245 (264)
T PRK13546 224 -YGELDDVLPKYEAFLNDFKKKS 245 (264)
T ss_pred -eCCHHHHHHHhHHHHHHHHhcc
Confidence 5666666655544444444443
No 198
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=202.28 Aligned_cols=154 Identities=20% Similarity=0.233 Sum_probs=120.5
Q ss_pred cccCccc---CCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC------CHHHHHHHH
Q psy11928 2 YAHCDLQ---PQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL------PYEKARKQL 58 (184)
Q Consensus 2 ~~~G~~~---p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~------~~~~~~~~l 58 (184)
+|+|+++ |++|+|.+++ +..++|+||++. +.. .++.+++.. ..+. ..+++.+++
T Consensus 47 ~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l 123 (246)
T PRK14269 47 CFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCL 123 (246)
T ss_pred HHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHH
Confidence 5788874 7999998653 346999999874 322 366555432 1111 123466789
Q ss_pred hhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928 59 GTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL 133 (184)
Q Consensus 59 ~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~ 133 (184)
+.+++... ..++++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||+||||+++
T Consensus 124 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred HHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 99999531 223578999999999999999999999999999999999999999999999764 6799999999999
Q ss_pred HHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 134 IRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+..+||+++++++|+++. .++..++
T Consensus 204 ~~~~~d~i~~l~~G~i~~-~g~~~~~ 228 (246)
T PRK14269 204 GKRVADYTAFFHLGELIE-FGESKEF 228 (246)
T ss_pred HHhhCcEEEEEECCEEEE-ECCHHHH
Confidence 999999999999999975 4444443
No 199
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=7.7e-30 Score=222.98 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=120.6
Q ss_pred cccCcccC-----CceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEK 53 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~ 53 (184)
+|+|+++| ++|+|.+++ +..+||+||++...+....++.+.+.. ..+.. .++
T Consensus 54 ~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (529)
T PRK15134 54 SILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGE 133 (529)
T ss_pred HHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 57899986 799997643 136999999863223334444443321 11222 245
Q ss_pred HHHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11928 54 ARKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIV 127 (184)
Q Consensus 54 ~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiiv 127 (184)
+.++++.+|+.+. ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 134 ~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v 213 (529)
T PRK15134 134 ILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFI 213 (529)
T ss_pred HHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 6788999999752 12458999999999999999999999999999999999999999999999875 36899999
Q ss_pred ecCHHHHHhhcCeEEEEeCCeEEEecCChh
Q psy11928 128 SHDERLIRDTECTLWVIENQTIEEIDGDFD 157 (184)
Q Consensus 128 sHd~~~~~~~~~~i~~l~~g~i~~~~~~~~ 157 (184)
|||++++..+||++++|++|+++. .+...
T Consensus 214 tHd~~~~~~~~dri~~l~~G~i~~-~g~~~ 242 (529)
T PRK15134 214 THNLSIVRKLADRVAVMQNGRCVE-QNRAA 242 (529)
T ss_pred cCcHHHHHHhcCEEEEEECCEEEE-eCCHH
Confidence 999999999999999999999875 34433
No 200
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=3.6e-30 Score=223.69 Aligned_cols=150 Identities=18% Similarity=0.247 Sum_probs=118.4
Q ss_pred cccCcccC-CceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHH-----hc---CCC----HHHHH
Q psy11928 2 YAHCDLQP-QQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQR-----LF---NLP----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p-~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~-----~~---~~~----~~~~~ 55 (184)
+|+|+.+| ++|+|.+++ +.++||+||++. ..+....++.+++.. .. ... ..++.
T Consensus 305 ~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (500)
T TIGR02633 305 ALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIG 384 (500)
T ss_pred HHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHH
Confidence 58999985 899998753 235999999852 123344455444321 11 111 23467
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER 132 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~ 132 (184)
++++.+++.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.+.++ +.|||+||||++
T Consensus 385 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 464 (500)
T TIGR02633 385 SAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA 464 (500)
T ss_pred HHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 88999999643224589999999999999999999999999999999999999999998887653 689999999999
Q ss_pred HHHhhcCeEEEEeCCeEEE
Q psy11928 133 LIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~ 151 (184)
++..+||+++++++|++..
T Consensus 465 ~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 465 EVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999864
No 201
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1e-29 Score=200.08 Aligned_cols=152 Identities=24% Similarity=0.305 Sum_probs=115.9
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhC--------
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTF-------- 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-------- 61 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +.. .++.+++..... ....++.+.++.+
T Consensus 48 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (229)
T cd03254 48 LLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTF--LFS-GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMK 124 (229)
T ss_pred HHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCch--hhh-hHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh
Confidence 68999999999998754 345999999874 322 366665543211 1223333333333
Q ss_pred ---CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 62 ---GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 62 ---~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
++..... +++.+|||||||||+|||||+.+|+++||||||+|||+.+++.+.+.+.+. +.|||+|||+++++..
T Consensus 125 ~~~~~~~~~~-~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 125 LPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred CcccccCHhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 3433333 468999999999999999999999999999999999999999999999765 5799999999999975
Q ss_pred hcCeEEEEeCCeEEEecCChhHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|+++++|++|++.. .++.+++
T Consensus 204 -~d~i~~l~~g~~~~-~~~~~~~ 224 (229)
T cd03254 204 -ADKILVLDDGKIIE-EGTHDEL 224 (229)
T ss_pred -CCEEEEEeCCeEEE-eCCHHHH
Confidence 99999999999875 5555444
No 202
>KOG0066|consensus
Probab=99.97 E-value=2.3e-30 Score=215.72 Aligned_cols=174 Identities=75% Similarity=1.172 Sum_probs=163.1
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA 81 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 81 (184)
.|.|-+.|..|+.+.+.+.+||++.|+....++.+++..+|+...++++.+.++..|..||+....+.-++..|||||+.
T Consensus 632 LL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKa 711 (807)
T KOG0066|consen 632 LLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKA 711 (807)
T ss_pred HHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchH
Confidence 46799999999999999999999999887789999999999988888888999999999999888877789999999999
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
||++|-.-+..|+|||||||||+||+++...+.+.|+++.+.|||||||-.++.+..+..|++++..|-++.|.+++|.+
T Consensus 712 RValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 712 RVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKK 791 (807)
T ss_pred HHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999989888999999999
Q ss_pred HHHHHhhhhhcCch
Q psy11928 162 ELLEALGEVVNNPS 175 (184)
Q Consensus 162 ~~~~~~~~~~~~~~ 175 (184)
++++.+.++..++.
T Consensus 792 EVLdaLGEv~vs~~ 805 (807)
T KOG0066|consen 792 EVLDALGEVLVSKK 805 (807)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999998887754
No 203
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-29 Score=202.93 Aligned_cols=154 Identities=22% Similarity=0.251 Sum_probs=119.9
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC--C----HHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL--P----YEKA 54 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~--~----~~~~ 54 (184)
+|+|+.+| ++|+|.+++ +..+||++|++. +.. .++.+++... .+. . .+++
T Consensus 64 ~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 140 (267)
T PRK14235 64 CLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIV 140 (267)
T ss_pred HHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHH
Confidence 57898874 899998653 235999999874 222 2555554321 111 1 2345
Q ss_pred HHHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 55 RKQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 55 ~~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
.++++.+|+... ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||+|||
T Consensus 141 ~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH 220 (267)
T PRK14235 141 ETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220 (267)
T ss_pred HHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 778999999531 223578999999999999999999999999999999999999999999999765 479999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++..+||++++|++|+++. .++.+++
T Consensus 221 ~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14235 221 SMQQAARVSQRTAFFHLGNLVE-VGDTEKM 249 (267)
T ss_pred CHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999975 4454443
No 204
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=5.3e-30 Score=222.11 Aligned_cols=154 Identities=22% Similarity=0.283 Sum_probs=121.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCC-Cc-----cCCHHHHHHHhcCCCHHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHL-TA-----EETPAEYLQRLFNLPYEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l-~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ +..+||++|++...+ +. ..++.+++... ....+++.++++.+|++
T Consensus 48 ~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~ 126 (490)
T PRK10938 48 ALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGIT 126 (490)
T ss_pred HHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCH
Confidence 68999999999998643 124899999864111 11 22333332211 01235677899999997
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
+..+ +++++|||||||||+||+||+.+|+++||||||+|||+.++.++.+.|.++ +.|||+||||++++..+||++
T Consensus 127 ~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v 205 (490)
T PRK10938 127 ALLD-RRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFA 205 (490)
T ss_pred hhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEE
Confidence 6554 589999999999999999999999999999999999999999999999765 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhH
Q psy11928 142 WVIENQTIEEIDGDFDD 158 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~ 158 (184)
++|++|+++. .++.++
T Consensus 206 ~~l~~G~i~~-~~~~~~ 221 (490)
T PRK10938 206 GVLADCTLAE-TGEREE 221 (490)
T ss_pred EEEECCEEEE-eCCHHH
Confidence 9999999875 455544
No 205
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=200.87 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=119.6
Q ss_pred cccCccc--C---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcC-CC----HHHHH
Q psy11928 2 YAHCDLQ--P---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFN-LP----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~-~~----~~~~~ 55 (184)
+|+|+++ | ++|+|.+++ +..++|+||++. +....++.+++.. ... .. .+++.
T Consensus 49 ~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 126 (252)
T PRK14256 49 SINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN--PFPAMSIYDNVIAGYKLNGRVNRSEADEIVE 126 (252)
T ss_pred HHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC--CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence 5789886 4 689997643 235999999874 3344555555432 111 11 23466
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++.. ....+.+.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ +.|||+||||
T Consensus 127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~ 206 (252)
T PRK14256 127 SSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206 (252)
T ss_pred HHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECC
Confidence 7888899853 1223478999999999999999999999999999999999999999999999765 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
++++..+||++++|++|++.. .++.++
T Consensus 207 ~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 233 (252)
T PRK14256 207 MQQAARVSDYTAFFYMGDLVE-CGETKK 233 (252)
T ss_pred HHHHHhhCCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999975 444443
No 206
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=2.9e-29 Score=200.14 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=120.9
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+.+ .+|+|.+++ +..++|+||++. +....++.+++... .... .+++.++++.+|+.
T Consensus 41 ~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~ 117 (248)
T PRK03695 41 RMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLD 117 (248)
T ss_pred HHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH
Confidence 5789885 599998754 134899999863 22344565554422 1111 23567889999997
Q ss_pred cccccccccCCChhHHHHHHHHHHHhc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLN-------APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI 134 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~-------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 134 (184)
...+ +++.+||||||||++||||++. +|+++||||||+|||+.++..+.++|.+. +.|||++|||++++
T Consensus 118 ~~~~-~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~ 196 (248)
T PRK03695 118 DKLG-RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHT 196 (248)
T ss_pred hHhc-CCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 6554 5899999999999999999997 67999999999999999999999998754 57999999999999
Q ss_pred HhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 135 RDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 135 ~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
..+||++++|++|+++. .++.+++
T Consensus 197 ~~~~d~i~~l~~G~i~~-~g~~~~~ 220 (248)
T PRK03695 197 LRHADRVWLLKQGKLLA-SGRRDEV 220 (248)
T ss_pred HHhCCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999975 5555544
No 207
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=200.76 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=119.9
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+.+| ++|+|.+++ +..+||+||++. +.. .++.+++.. ..+. . .+++.
T Consensus 49 ~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (251)
T PRK14270 49 CLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVE 125 (251)
T ss_pred HHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHH
Confidence 57898875 799998653 235999999874 333 465555432 1221 1 13456
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++.. ...++++.+||||||||++||||++.+|+++||||||+|||+.++.++.+.|.++ +.|||+||||
T Consensus 126 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~ 205 (251)
T PRK14270 126 WALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205 (251)
T ss_pred HHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcC
Confidence 7888888742 1223578999999999999999999999999999999999999999999999765 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||+++++++|+++. .++.++.
T Consensus 206 ~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14270 206 MQQASRVSDYTAFFLMGDLIE-FNKTEKI 233 (251)
T ss_pred HHHHHHhcCEEEEEECCeEEE-eCCHHHH
Confidence 999999999999999999976 4454443
No 208
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.9e-29 Score=201.11 Aligned_cols=154 Identities=24% Similarity=0.231 Sum_probs=119.6
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+.+| ++|+|.+++ +..+||++|++. +....++.+++.. ..+. . .+.+.
T Consensus 49 ~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~ 126 (258)
T PRK14241 49 TLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN--PFPTMSIRDNVVAGLKLNGVRNKKDLDELVE 126 (258)
T ss_pred HHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 58899874 799998753 135999999864 3344455555432 1111 1 13456
Q ss_pred HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
++++.+|+. ... ++++.+|||||||||+||||++.+|+++||||||+|||+.++.++.+.|.+. +.|||+|||
T Consensus 127 ~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 127 KSLRGANLWNEVKDRL-DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHcCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 778888884 233 3588999999999999999999999999999999999999999999999765 579999999
Q ss_pred CHHHHHhhcCeEEEEe------CCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIE------NQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~------~g~i~~~~~~~~~~ 159 (184)
|++++..+||++++++ +|++++ .++.+++
T Consensus 206 ~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~~~~ 240 (258)
T PRK14241 206 NMQQAARVSDQTAFFNLEATGKPGRLVE-IDDTEKI 240 (258)
T ss_pred CHHHHHHhCCEEEEEecccCCCCceEEe-cCCHHHH
Confidence 9999999999999997 798875 4555444
No 209
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-29 Score=203.26 Aligned_cols=154 Identities=21% Similarity=0.201 Sum_probs=118.5
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~ 55 (184)
+|+|+.+ |++|+|.+++ +..++|+||++. +.. .++.+++... ... . .+.+.
T Consensus 66 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 142 (268)
T PRK14248 66 SINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN--PFP-KSIYNNITHALKYAGERRKSVLDEIVE 142 (268)
T ss_pred HHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 5788764 7999997642 236999999874 222 3555554321 111 1 13356
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
+.++.+++.. ...++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++ +.|||++|||
T Consensus 143 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~ 222 (268)
T PRK14248 143 ESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222 (268)
T ss_pred HHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeC
Confidence 6788888742 1223589999999999999999999999999999999999999999999999765 4799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||++++|++|+++. .++.+++
T Consensus 223 ~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 250 (268)
T PRK14248 223 MQQALRVSDRTAFFLNGDLVE-YDQTEQI 250 (268)
T ss_pred HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999975 4554443
No 210
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.97 E-value=9.9e-30 Score=228.25 Aligned_cols=154 Identities=21% Similarity=0.325 Sum_probs=126.5
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT- 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 69 (184)
.|+|+++|++|+|.+++ ++.|||++|++. +. ..|+.+++......+.+++.+.++..|+.+....
T Consensus 498 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~l 574 (686)
T TIGR03797 498 LLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR--LM-SGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAM 574 (686)
T ss_pred HHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCc--cC-cccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhc
Confidence 58999999999998764 457999999984 32 4577777754333456777777877777543221
Q ss_pred ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCe
Q psy11928 70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~ 140 (184)
....+||||||||++||||++.+|+++|||||||+||+.+.+.+.+.+.+.++|+|+|||+++.+.. ||+
T Consensus 575 p~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~ 653 (686)
T TIGR03797 575 PMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADR 653 (686)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCE
Confidence 1246799999999999999999999999999999999999999999999888999999999999975 899
Q ss_pred EEEEeCCeEEEecCChhHHH
Q psy11928 141 LWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 141 i~~l~~g~i~~~~~~~~~~~ 160 (184)
|++|++|++++ .|+.++..
T Consensus 654 Iivl~~G~iv~-~G~~~~Ll 672 (686)
T TIGR03797 654 IYVLDAGRVVQ-QGTYDELM 672 (686)
T ss_pred EEEEECCEEEE-ECCHHHHH
Confidence 99999999986 66665543
No 211
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-29 Score=201.42 Aligned_cols=154 Identities=21% Similarity=0.280 Sum_probs=118.8
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC--C----HHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL--P----YEKA 54 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~--~----~~~~ 54 (184)
+|+|+.+ |++|+|.+++ +..++|+||++. +... ++.+++.. ..+. . .+.+
T Consensus 50 ~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~ 126 (251)
T PRK14244 50 CFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIV 126 (251)
T ss_pred HHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5788876 4799998643 235999999874 2222 55554432 1111 1 1345
Q ss_pred HHHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 55 RKQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 55 ~~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
.++++.+|+... ..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++||
T Consensus 127 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH 206 (251)
T PRK14244 127 EKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTH 206 (251)
T ss_pred HHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 678899998641 123478999999999999999999999999999999999999999999999765 579999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++..+||++++|++|+++. .++.+++
T Consensus 207 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 235 (251)
T PRK14244 207 SMKQAKKVSDRVAFFQSGRIVE-YNTTQEI 235 (251)
T ss_pred CHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999975 4454433
No 212
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.4e-29 Score=198.58 Aligned_cols=153 Identities=25% Similarity=0.312 Sum_probs=118.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHH---------HHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEK---------ARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~---------~~~~l~~ 60 (184)
+|+|+.+|++|+|.+++ ++.++|+||++. +.. .++.+++.... ...... +.+.++.
T Consensus 47 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (234)
T cd03251 47 LIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVF--LFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIME 123 (234)
T ss_pred HHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCe--ecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 58999999999998754 245999999874 322 46666654321 112222 2234444
Q ss_pred C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
+ ++....+ +++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.|.+. +.|||++|||++++..
T Consensus 124 l~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 124 LPEGYDTVIG-ERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred cccCcceeec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 4 5554444 478999999999999999999999999999999999999999999999765 6799999999999976
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||++++|++|++.. .++.+++.
T Consensus 203 -~d~v~~l~~G~i~~-~~~~~~~~ 224 (234)
T cd03251 203 -ADRIVVLEDGKIVE-RGTHEELL 224 (234)
T ss_pred -CCEEEEecCCeEee-eCCHHHHH
Confidence 99999999999874 55555543
No 213
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=1.6e-29 Score=197.96 Aligned_cols=146 Identities=23% Similarity=0.247 Sum_probs=116.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc--
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH-- 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-- 68 (184)
+|+|+.+|++|+|.+++ ++.++|+||++. +. ..++.+++........+++.+.++.+++.+...
T Consensus 49 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l 125 (221)
T cd03244 49 ALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPV--LF-SGTIRSNLDPFGEYSDEELWQALERVGLKEFVESL 125 (221)
T ss_pred HHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCc--cc-cchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhc
Confidence 58999999999998653 346999999874 32 236666553221223445556666666643321
Q ss_pred --------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928 69 --------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 69 --------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~ 138 (184)
.+++.+||+||+||++||||++.+|+++||||||++||+.++..+.+.|++. +.|||++||+++++.. |
T Consensus 126 ~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 204 (221)
T cd03244 126 PGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S 204 (221)
T ss_pred ccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C
Confidence 2478999999999999999999999999999999999999999999999865 5799999999999976 9
Q ss_pred CeEEEEeCCeEEE
Q psy11928 139 CTLWVIENQTIEE 151 (184)
Q Consensus 139 ~~i~~l~~g~i~~ 151 (184)
+++++|++|++..
T Consensus 205 d~i~~l~~g~~~~ 217 (221)
T cd03244 205 DRILVLDKGRVVE 217 (221)
T ss_pred CEEEEEECCeEEe
Confidence 9999999999865
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.4e-29 Score=203.54 Aligned_cols=152 Identities=24% Similarity=0.262 Sum_probs=118.9
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC---HHHHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP---YEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~---~~~~~~~ 57 (184)
+|+|+++ |++|+|.+++ ++.++|+||++. +... ++.+++... .+.. .+++.++
T Consensus 84 ~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~ 160 (285)
T PRK14254 84 CINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN--PFPK-SIYDNVAYGLKIQGYDGDIDERVEES 160 (285)
T ss_pred HHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc--cCcC-CHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5789886 6899997643 236999999874 3332 666554321 1111 2456778
Q ss_pred HhhCCCCc----ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928 58 LGTFGLAG----HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE 131 (184)
Q Consensus 58 l~~~~l~~----~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~ 131 (184)
++.+|+.. .. ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+
T Consensus 161 l~~~~l~~~i~~~~-~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~ 239 (285)
T PRK14254 161 LRRAALWDEVKDQL-DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNM 239 (285)
T ss_pred HHHcCCCchhHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 88998852 23 3579999999999999999999999999999999999999999999999876 46999999999
Q ss_pred HHHHhhcCeEE-EEeCCeEEEecCChhH
Q psy11928 132 RLIRDTECTLW-VIENQTIEEIDGDFDD 158 (184)
Q Consensus 132 ~~~~~~~~~i~-~l~~g~i~~~~~~~~~ 158 (184)
+++..+||+++ ++++|+++. .++..+
T Consensus 240 ~~i~~~~dri~v~l~~G~i~~-~g~~~~ 266 (285)
T PRK14254 240 QQAARISDKTAVFLTGGELVE-FDDTDK 266 (285)
T ss_pred HHHHhhcCEEEEEeeCCEEEE-eCCHHH
Confidence 99999999975 579999975 455444
No 215
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-29 Score=200.34 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=118.9
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~ 55 (184)
+|+|+.+ |++|+|.+++ +..++|++|++. +.. .++.+++... .+. . ..++.
T Consensus 49 ~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (251)
T PRK14251 49 CLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVE 125 (251)
T ss_pred HHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6889986 4799997643 235999999874 222 4665554321 111 1 13456
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++.. ...++++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||+||||
T Consensus 126 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 205 (251)
T PRK14251 126 ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205 (251)
T ss_pred HHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 7788888841 1223578999999999999999999999999999999999999999999999865 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
++++..+||++++|++|++.. .++.++
T Consensus 206 ~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 232 (251)
T PRK14251 206 LQQAGRISDQTAFLMNGDLIE-AGPTEE 232 (251)
T ss_pred HHHHHhhcCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999975 344433
No 216
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.3e-29 Score=198.75 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=118.0
Q ss_pred cccCcccCC-----ceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-CH----HHHH
Q psy11928 2 YAHCDLQPQ-----QGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-PY----EKAR 55 (184)
Q Consensus 2 ~~~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~~----~~~~ 55 (184)
+|+|+++|+ +|+|.+++ +..++|+||++. +....++.+++... .+. .. +.+.
T Consensus 49 ~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~ 126 (252)
T PRK14272 49 AINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN--PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE 126 (252)
T ss_pred HHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc--cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 588998874 89997643 236999999874 33444565554321 111 12 2344
Q ss_pred HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
++++.+++. ... ++++++|||||+||++||||++.+|+++||||||++||+.++..+.+.|++. +.|||++||
T Consensus 127 ~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 205 (252)
T PRK14272 127 RSLRGAALWDEVKDRL-KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH 205 (252)
T ss_pred HHHHHcCcchhhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 556666653 223 3579999999999999999999999999999999999999999999999765 479999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++++..+||++++|++|++++ .++.+++
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 234 (252)
T PRK14272 206 NMHQAARVSDTTSFFLVGDLVE-HGPTDQL 234 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999975 4554443
No 217
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=1.5e-29 Score=196.08 Aligned_cols=139 Identities=31% Similarity=0.393 Sum_probs=111.2
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ ++.++|++|++. +....++.+++.. ..+.. .+++.++++
T Consensus 43 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (206)
T TIGR03608 43 IIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALE 120 (206)
T ss_pred HHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh--hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 58999999999997653 135999999874 3334455554432 11211 245678899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+|++...+ +++.+|||||+||++|||||+.+|+++||||||++||+.++..+.+.|++. +.|+|++||+++++.
T Consensus 121 ~~~l~~~~~-~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~- 198 (206)
T TIGR03608 121 KVGLNLKLK-QKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK- 198 (206)
T ss_pred HcCchhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-
Confidence 999976654 589999999999999999999999999999999999999999999999764 679999999999774
Q ss_pred hcCeEEEE
Q psy11928 137 TECTLWVI 144 (184)
Q Consensus 137 ~~~~i~~l 144 (184)
.|+++++|
T Consensus 199 ~~d~i~~l 206 (206)
T TIGR03608 199 QADRVIEL 206 (206)
T ss_pred hcCEEEeC
Confidence 79998764
No 218
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=1.8e-29 Score=197.92 Aligned_cols=144 Identities=31% Similarity=0.404 Sum_probs=115.8
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcC-CC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFN-LP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~-~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ +..++|+||++. +....++.+++.. ... .. ..++.++++
T Consensus 50 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (220)
T TIGR02982 50 LIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLE 127 (220)
T ss_pred HHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 58899999999998753 246999999874 3334455554331 111 12 235778899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
.+|+..... +++.+||+|||||++|||+++.+|+++||||||+|||+.++..+.+.|+++ +.|||++|||++..
T Consensus 128 ~~~l~~~~~-~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~- 205 (220)
T TIGR02982 128 AVGLGDHLD-YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL- 205 (220)
T ss_pred HcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-
Confidence 999976554 589999999999999999999999999999999999999999999888653 68999999999865
Q ss_pred hhcCeEEEEeCCeE
Q psy11928 136 DTECTLWVIENQTI 149 (184)
Q Consensus 136 ~~~~~i~~l~~g~i 149 (184)
.+||++++|++|++
T Consensus 206 ~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 206 DVADRIVHMEDGKL 219 (220)
T ss_pred hhCCEEEEEECCEE
Confidence 69999999999975
No 219
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-29 Score=198.56 Aligned_cols=154 Identities=24% Similarity=0.231 Sum_probs=118.1
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+.+| ++|+|.+++ +..++|++|++. +.. .++.+++.. ..+. . .+++.
T Consensus 48 ~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14240 48 TLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVE 124 (250)
T ss_pred HHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 57888763 699998653 235999999874 222 455554432 1121 1 23456
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++.. ...++++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|++. +.|||+||||
T Consensus 125 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 204 (250)
T PRK14240 125 KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN 204 (250)
T ss_pred HHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 6788887742 1223579999999999999999999999999999999999999999999999765 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||+++++++|+++. .++.+++
T Consensus 205 ~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 232 (250)
T PRK14240 205 MQQASRISDKTAFFLNGEIVE-FGDTVDL 232 (250)
T ss_pred HHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999975 4444443
No 220
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=1.4e-29 Score=198.91 Aligned_cols=141 Identities=21% Similarity=0.301 Sum_probs=112.8
Q ss_pred cccCcccCCceeEEec--C-----------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHH
Q psy11928 2 YAHCDLQPQQGELKKN--H-----------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~--~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~ 55 (184)
+|+|+++|++|+|.++ + +..+||+||++. +....++.+++.. ..+.. .+++.
T Consensus 53 ~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 130 (224)
T TIGR02324 53 SLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR--VIPRVSALEVVAEPLLERGVPREAARARAR 130 (224)
T ss_pred HHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5899999999999875 2 135999999874 3334455444321 11222 23567
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER 132 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~ 132 (184)
++++.+|+.....++++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++. +.|||+|||+.+
T Consensus 131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~ 210 (224)
T TIGR02324 131 ELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE 210 (224)
T ss_pred HHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 78999999754334589999999999999999999999999999999999999999999998764 679999999999
Q ss_pred HHHhhcCeEEEE
Q psy11928 133 LIRDTECTLWVI 144 (184)
Q Consensus 133 ~~~~~~~~i~~l 144 (184)
++..+||+++.+
T Consensus 211 ~~~~~~d~i~~~ 222 (224)
T TIGR02324 211 VRELVADRVMDV 222 (224)
T ss_pred HHHHhcceeEec
Confidence 999999998865
No 221
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=201.51 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=118.1
Q ss_pred cccCc---ccC--CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCD---LQP--QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~---~~p--~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
.|+|+ .+| ++|+|.+++ +..++|+||++. +.. .++.+++.. ..+. . ...+.
T Consensus 48 ~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14245 48 LFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVE 124 (250)
T ss_pred HHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 46665 454 589997653 235999999874 222 355555432 1111 1 23466
Q ss_pred HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+|+.+. ..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++. +.|||+||||
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~ 204 (250)
T PRK14245 125 ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204 (250)
T ss_pred HHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 78888988531 223578999999999999999999999999999999999999999999999765 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||++++|++|+++. .++.+++
T Consensus 205 ~~~~~~~~d~v~~l~~G~~~~-~~~~~~~ 232 (250)
T PRK14245 205 MQQAARVSDKTAFFYMGEMVE-YDDTKKI 232 (250)
T ss_pred HHHHHhhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999999999999975 4555444
No 222
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=2.6e-29 Score=203.19 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=122.5
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+++ ++|+|.+++ +..++|+||++. +.. .++.+++........+++.+.++.+|+....+ +
T Consensus 49 ~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~--lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~-~ 123 (275)
T cd03289 49 AFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVF--IFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIE-Q 123 (275)
T ss_pred HHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcc--cch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHH-h
Confidence 5789987 789998764 346999999974 332 36666653222234567788889999976554 4
Q ss_pred cccC-----------CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 71 KMKD-----------LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 71 ~~~~-----------LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
++.. ||||||||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||+|||+++.+..
T Consensus 124 ~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~- 202 (275)
T cd03289 124 FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE- 202 (275)
T ss_pred CcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-
Confidence 6665 9999999999999999999999999999999999999999999864 5799999999999875
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||++++|++|++++ .++++++.
T Consensus 203 ~dri~vl~~G~i~~-~g~~~~l~ 224 (275)
T cd03289 203 CQRFLVIEENKVRQ-YDSIQKLL 224 (275)
T ss_pred CCEEEEecCCeEee-cCCHHHHh
Confidence 99999999999986 45555443
No 223
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5e-29 Score=198.91 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=118.1
Q ss_pred cccCcc--cC---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC-----HHHHH
Q psy11928 2 YAHCDL--QP---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP-----YEKAR 55 (184)
Q Consensus 2 ~~~G~~--~p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~-----~~~~~ 55 (184)
+|+|+. .| ++|+|.+++ +..++|+||++. +.. .++.+++.. ..+.. .+++.
T Consensus 50 ~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 126 (252)
T PRK14239 50 SINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVE 126 (252)
T ss_pred HHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 578874 46 599998653 235999999874 222 455555432 11211 13456
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++.. ...++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||
T Consensus 127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~ 206 (252)
T PRK14239 127 KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRS 206 (252)
T ss_pred HHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECC
Confidence 6788888742 1223578999999999999999999999999999999999999999999999765 4799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||++++|++|++.. .++..+.
T Consensus 207 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 234 (252)
T PRK14239 207 MQQASRISDRTGFFLDGDLIE-YNDTKQM 234 (252)
T ss_pred HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999975 4554443
No 224
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=200.59 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=120.2
Q ss_pred cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-CH----HHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-PY----EKARK 56 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~~----~~~~~ 56 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +....++.+++... .+. .. +.+.+
T Consensus 55 ~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~ 132 (257)
T PRK14246 55 VLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEE 132 (257)
T ss_pred HHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 68999999997664331 346999999874 33444555554321 111 11 34567
Q ss_pred HHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928 57 QLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~ 131 (184)
+++.+++.. ...++++..||+|||||++||||++.+|+++||||||++||+.++.++.+.|.++ +.|||+|||++
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~ 212 (257)
T PRK14246 133 CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNP 212 (257)
T ss_pred HHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCH
Confidence 888899853 1223578999999999999999999999999999999999999999999999765 47999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++...|+++++|++|++..+ +..+++
T Consensus 213 ~~~~~~~d~v~~l~~g~i~~~-g~~~~~ 239 (257)
T PRK14246 213 QQVARVADYVAFLYNGELVEW-GSSNEI 239 (257)
T ss_pred HHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 999999999999999999764 444443
No 225
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.96 E-value=2e-29 Score=198.33 Aligned_cols=140 Identities=25% Similarity=0.312 Sum_probs=112.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC--CHHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL--PYEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~ 65 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +.. .++.+++.. .... ..+++.++++.+++..
T Consensus 52 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 52 IVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD 128 (225)
T ss_pred HHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence 68999999999998764 246999999874 333 366665432 1111 2345678899999964
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
...++++.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.+.+. +.|||++|||++++. .||++
T Consensus 129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i 207 (225)
T PRK10247 129 TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKV 207 (225)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEE
Confidence 2234589999999999999999999999999999999999999999999988753 679999999999996 59999
Q ss_pred EEEe
Q psy11928 142 WVIE 145 (184)
Q Consensus 142 ~~l~ 145 (184)
++|+
T Consensus 208 ~~l~ 211 (225)
T PRK10247 208 ITLQ 211 (225)
T ss_pred EEEe
Confidence 9995
No 226
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.8e-29 Score=201.10 Aligned_cols=141 Identities=21% Similarity=0.198 Sum_probs=111.8
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC---HHHHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP---YEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~---~~~~~~~ 57 (184)
+|+|+++ |++|+|.+++ +..++|+||++. +.. .++.+++... .+.. .+++.++
T Consensus 58 ~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 134 (269)
T PRK14259 58 SLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERS 134 (269)
T ss_pred HHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHH
Confidence 5788887 6999998653 135999999874 333 3666655321 1111 2345667
Q ss_pred HhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928 58 LGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE 131 (184)
Q Consensus 58 l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~ 131 (184)
++.+++. ... ++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|.+. +.|||++|||+
T Consensus 135 l~~~~l~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~ 213 (269)
T PRK14259 135 LRKAAVWDECKDKL-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNM 213 (269)
T ss_pred HHHhCCcchhhhhh-CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 8888763 223 3578999999999999999999999999999999999999999999999765 46999999999
Q ss_pred HHHHhhcCeEEEEeC
Q psy11928 132 RLIRDTECTLWVIEN 146 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~ 146 (184)
+++..+||++++|++
T Consensus 214 ~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 214 QQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHhcCEEEEEec
Confidence 999999999999996
No 227
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=4.8e-29 Score=193.69 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=111.2
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +.. .++.+++.........++.+.++ + . +
T Consensus 53 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~l~---~----~-~ 121 (207)
T cd03369 53 ALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPT--LFS-GTIRSNLDPFDEYSDEEIYGALR---V----S-E 121 (207)
T ss_pred HHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCc--ccC-ccHHHHhcccCCCCHHHHHHHhh---c----c-C
Confidence 58999999999998764 346999999974 333 36666653322223333444443 2 2 4
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|+|++||+.+++.. ||++++|++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~ 200 (207)
T cd03369 122 GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGE 200 (207)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999865 5799999999999976 99999999999
Q ss_pred EEE
Q psy11928 149 IEE 151 (184)
Q Consensus 149 i~~ 151 (184)
+..
T Consensus 201 i~~ 203 (207)
T cd03369 201 VKE 203 (207)
T ss_pred EEe
Confidence 864
No 228
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.8e-29 Score=198.84 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=119.8
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+.+| ++|+|.+++ +..++|+||++. +.. .++.+++.. ..+. . .+.+.
T Consensus 48 ~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14262 48 SINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVE 124 (250)
T ss_pred HHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 57898874 899998653 246999999874 223 455555432 1111 1 12356
Q ss_pred HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++... ..++++.+|||||+||++||||++.+|+++||||||+|||+.++.++.+.|.++ +.|||+||||
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~ 204 (250)
T PRK14262 125 ESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204 (250)
T ss_pred HHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 67888888532 224589999999999999999999999999999999999999999999999765 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||+++++++|+++. .++.++.
T Consensus 205 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 232 (250)
T PRK14262 205 IGQAIRIADYIAFMYRGELIE-YGPTREI 232 (250)
T ss_pred HHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 999999999999999999975 4555443
No 229
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.1e-29 Score=199.35 Aligned_cols=154 Identities=24% Similarity=0.282 Sum_probs=119.5
Q ss_pred cccCccc--C---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDLQ--P---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+++ | ++|+|.+++ +..+||+||++. +.. .++.+++.. ..+. . .+++.
T Consensus 57 ~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 133 (259)
T PRK14274 57 TLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN--PFP-QSIFDNVAYGPRIHGTKNKKKLQEIVE 133 (259)
T ss_pred HHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc--ccc-cCHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence 5788887 3 699997643 235999999874 222 256555432 1121 1 12356
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++.. ...++++.+||||||||++|||+++.+|+++||||||+|||+.++..+.+.|.+. +.|+|+||||
T Consensus 134 ~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~ 213 (259)
T PRK14274 134 KSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213 (259)
T ss_pred HHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence 6788888853 1223589999999999999999999999999999999999999999999999775 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||++++|++|+++. .++.+++
T Consensus 214 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 241 (259)
T PRK14274 214 MQQAARVSDQTAFFYMGELVE-CNDTNKM 241 (259)
T ss_pred HHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999999999999975 4555554
No 230
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.96 E-value=3.4e-29 Score=198.30 Aligned_cols=153 Identities=27% Similarity=0.359 Sum_probs=115.2
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHH---------hh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQL---------GT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l---------~~ 60 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +.. .++.+++.... ....+++.+.+ +.
T Consensus 48 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (238)
T cd03249 48 LLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPV--LFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMS 124 (238)
T ss_pred HHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchh--hhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHh
Confidence 68999999999998754 245999999864 222 35665554211 11122222222 22
Q ss_pred C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
+ ++..... +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||++++.
T Consensus 125 l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~- 202 (238)
T cd03249 125 LPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR- 202 (238)
T ss_pred hccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-
Confidence 2 3433333 468999999999999999999999999999999999999999999999764 579999999999997
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
.||++++|++|++.. .++.+++.
T Consensus 203 ~~d~v~~l~~G~i~~-~~~~~~~~ 225 (238)
T cd03249 203 NADLIAVLQNGQVVE-QGTHDELM 225 (238)
T ss_pred hCCEEEEEECCEEEE-eCCHHHHh
Confidence 799999999999864 55555443
No 231
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.9e-29 Score=197.85 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=118.9
Q ss_pred cccCcccC-----CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC-----HHHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP-----YEKARK 56 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~-----~~~~~~ 56 (184)
+|+|+.+| ++|+|.+++ +..++|+||++. +.. .++.+++.. ..+.. .+++.+
T Consensus 48 ~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 124 (249)
T PRK14253 48 CLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVER 124 (249)
T ss_pred HHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHH
Confidence 57898886 599998643 235999999874 333 455555432 11211 123456
Q ss_pred HHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928 57 QLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~ 131 (184)
.++.+++.. ...++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||+|||++
T Consensus 125 ~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 204 (249)
T PRK14253 125 SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSM 204 (249)
T ss_pred HHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 777788742 1223578999999999999999999999999999999999999999999999865 47999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++..+||++++|++|++.. .++.+++
T Consensus 205 ~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 231 (249)
T PRK14253 205 QQARRISDRTAFFLMGELVE-HDDTQVI 231 (249)
T ss_pred HHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999975 4554443
No 232
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=5.1e-29 Score=196.04 Aligned_cols=147 Identities=22% Similarity=0.229 Sum_probs=117.0
Q ss_pred cccCccc---CCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH---hc--C-CCH----HHHHH-HHh
Q psy11928 2 YAHCDLQ---PQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF--N-LPY----EKARK-QLG 59 (184)
Q Consensus 2 ~~~G~~~---p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~--~-~~~----~~~~~-~l~ 59 (184)
.|+|+++ |++|+|.+++ ++.++|+||++. +....++.+++.. .. . ... ..+.+ .++
T Consensus 52 ~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 129 (226)
T cd03234 52 AISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDI--LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR 129 (226)
T ss_pred HHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCc--cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHH
Confidence 5789998 9999998754 356999999874 3334455554431 11 1 111 12344 788
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH-HHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE-RLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~-~~~~ 135 (184)
.++++...+ +++++|||||+||++||||++.+|+++||||||+|||+.++..+.+.+++. +.|+|++||+. +++.
T Consensus 130 ~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~ 208 (226)
T cd03234 130 DLALTRIGG-NLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLF 208 (226)
T ss_pred hhcchhhhc-ccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHH
Confidence 889876554 579999999999999999999999999999999999999999999998754 57999999998 6888
Q ss_pred hhcCeEEEEeCCeEEE
Q psy11928 136 DTECTLWVIENQTIEE 151 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~ 151 (184)
.+||+++++++|+++.
T Consensus 209 ~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 209 RLFDRILLLSSGEIVY 224 (226)
T ss_pred HhCCEEEEEeCCEEEe
Confidence 9999999999999864
No 233
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6e-29 Score=202.19 Aligned_cols=153 Identities=21% Similarity=0.231 Sum_probs=119.1
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~ 55 (184)
+|+|+.+ |++|+|.+++ +..+||++|++. +.. .++.+++... ... . .+.+.
T Consensus 84 ~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 160 (286)
T PRK14275 84 AINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN--PFP-KSIFDNIAYGPRLHGINDKKQLEEIVE 160 (286)
T ss_pred HHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC--CCc-cCHHHHHHhHHHhcCCCcHHHHHHHHH
Confidence 5788754 4999997643 236999999874 333 3666665421 111 1 13355
Q ss_pred HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
++++.+|+. +.. ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||
T Consensus 161 ~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH 239 (286)
T PRK14275 161 KSLRKAALWDEVSDRL-DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTH 239 (286)
T ss_pred HHHHHhCCccchhhHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 678888873 233 3579999999999999999999999999999999999999999999999865 469999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++..+||++++|++|++.. .++..++
T Consensus 240 ~~~~~~~~~d~i~~L~~G~i~~-~g~~~~~ 268 (286)
T PRK14275 240 NMQQASRVSDYTMFFYEGVLVE-HAPTAQL 268 (286)
T ss_pred CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999975 4555443
No 234
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=6.1e-29 Score=200.85 Aligned_cols=154 Identities=24% Similarity=0.273 Sum_probs=122.0
Q ss_pred cccCcccCC--------ceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---c----C-C---CH
Q psy11928 2 YAHCDLQPQ--------QGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F----N-L---PY 51 (184)
Q Consensus 2 ~~~G~~~p~--------~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~----~-~---~~ 51 (184)
+|+|+++|+ +|+|.+++ ++.++|+||++. +....++.+++... . . . ..
T Consensus 46 ~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 123 (272)
T PRK13547 46 ALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ--PAFAFSAREIVLLGRYPHARRAGALTHRDG 123 (272)
T ss_pred HHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC--CCCCCcHHHHHhhcccccccccccCCHHHH
Confidence 589999998 99998754 224899999863 12234566554321 0 0 0 12
Q ss_pred HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEY-- 120 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~-- 120 (184)
+.+.++++.+|+....+ +++.+|||||+|||+|||||+ .+|+++||||||++||+.++..+.+.+.+.
T Consensus 124 ~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 202 (272)
T PRK13547 124 EIAWQALALAGATALVG-RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLAR 202 (272)
T ss_pred HHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 34677899999986654 589999999999999999999 599999999999999999999999988653
Q ss_pred --CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 121 --KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 121 --~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+.|||+||||++++..+||++++|++|+++. .++.++.
T Consensus 203 ~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 242 (272)
T PRK13547 203 DWNLGVLAIVHDPNLAARHADRIAMLADGAIVA-HGAPADV 242 (272)
T ss_pred hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-ecCHHHH
Confidence 6799999999999999999999999999875 4555444
No 235
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.5e-29 Score=196.32 Aligned_cols=140 Identities=26% Similarity=0.344 Sum_probs=113.3
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC-CCHHHHHHHHhhCCCCccc
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN-LPYEKARKQLGTFGLAGHA 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~~l~~~~l~~~~ 67 (184)
+|+|+++|++|+|.+++ +..++|++|++. +....++.+++... ++ ...+++.++++.+|+....
T Consensus 46 ~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 123 (204)
T PRK13538 46 ILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPG--IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE 123 (204)
T ss_pred HHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccc--cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh
Confidence 58999999999998754 235999999863 34445666654321 12 2235678899999997655
Q ss_pred ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++|||.+++.....|++.+
T Consensus 124 ~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 124 D-VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred h-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 4 589999999999999999999999999999999999999999999998764 679999999999998866666655
No 236
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.3e-29 Score=217.24 Aligned_cols=150 Identities=17% Similarity=0.262 Sum_probs=116.4
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHH-----HHHHHh---cCC-C----HHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPA-----EYLQRL---FNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~-----~~~~~~---~~~-~----~~~~~ 55 (184)
.|+|+.+|++|+|.+++ +..+||+||++. ..+....++. +.+... .+. . .+.+.
T Consensus 293 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T PRK10982 293 TLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQ 372 (491)
T ss_pred HHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHH
Confidence 58999999999998764 123899999752 1122233322 212111 111 1 23467
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHH
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDER 132 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~ 132 (184)
++++.+++.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+++.+.+ .+.|||+||||++
T Consensus 373 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred HHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 7889999953223468999999999999999999999999999999999999999999988854 4789999999999
Q ss_pred HHHhhcCeEEEEeCCeEEE
Q psy11928 133 LIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~ 151 (184)
++..+||++++|++|+++.
T Consensus 453 ~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 453 ELLGITDRILVMSNGLVAG 471 (491)
T ss_pred HHHhhCCEEEEEECCEEEE
Confidence 9999999999999999874
No 237
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=199.60 Aligned_cols=154 Identities=22% Similarity=0.247 Sum_probs=119.8
Q ss_pred cccCcccC-----CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC-CCH----HHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN-LPY----EKARK 56 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~-~~~----~~~~~ 56 (184)
+|+|+++| ++|+|.+++ +..++|+||++. +.. .++.+++... .. ... ..+.+
T Consensus 66 ~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~ 142 (276)
T PRK14271 66 TLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQA 142 (276)
T ss_pred HHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 57899885 799998653 245999999874 222 4555554321 11 122 23456
Q ss_pred HHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928 57 QLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~ 131 (184)
+++.+++... ...+.+.+|||||+||++|||||+.+|+++||||||++||+.+++.+.+.|++. ..|||+||||+
T Consensus 143 ~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~ 222 (276)
T PRK14271 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNL 222 (276)
T ss_pred HHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 7888888632 123478999999999999999999999999999999999999999999999765 47999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++..+||++++|++|+++. .++.+++
T Consensus 223 ~~~~~~~dri~~l~~G~i~~-~g~~~~~ 249 (276)
T PRK14271 223 AQAARISDRAALFFDGRLVE-EGPTEQL 249 (276)
T ss_pred HHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999975 4555444
No 238
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=3.2e-29 Score=221.08 Aligned_cols=143 Identities=28% Similarity=0.349 Sum_probs=118.4
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc-CC-CHHHHHHHHhhCCCCcccccccccCCChhH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NL-PYEKARKQLGTFGLAGHAHTIKMKDLSGGQ 79 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 79 (184)
.|+|+++|++|+|.++ ..+||+||++. +....|+.+++.... .. ....+.++++.+++.+..+ +++.+|||||
T Consensus 384 ~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~LSGGe 458 (590)
T PRK13409 384 LLAGVLKPDEGEVDPE--LKISYKPQYIK--PDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-KNVKDLSGGE 458 (590)
T ss_pred HHhCCCCCCceEEEEe--eeEEEeccccc--CCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-CCcccCCHHH
Confidence 5899999999999876 57999999864 234456666554321 11 2234678899999986554 6899999999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q psy11928 80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIE 150 (184)
Q Consensus 80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~ 150 (184)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+++++++ ++.
T Consensus 459 ~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 459 LQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence 99999999999999999999999999999999999999764 68999999999999999999999965 553
No 239
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.4e-29 Score=201.55 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=117.5
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-CH----HHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-PY----EKAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~~----~~~~ 55 (184)
+|+|+++ |++|+|.+++ +..+||+||++. +.. .++.+++.. .... .. ..+.
T Consensus 69 ~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~ 145 (271)
T PRK14238 69 TLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVE 145 (271)
T ss_pred HHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 5789887 6999998653 235999999874 222 366665532 1121 11 2245
Q ss_pred HHHhhCCC----CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 56 KQLGTFGL----AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l----~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
+.++.+++ .... ++++.+||||||||++|||+|+.+|+++||||||+|||+.++.++.+.|.+. +.|||+|||
T Consensus 146 ~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 224 (271)
T PRK14238 146 KSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTH 224 (271)
T ss_pred HHHHHcCCcchHHHHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEc
Confidence 55666643 3233 3579999999999999999999999999999999999999999999999765 579999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++..+||++++|++|++.. .++..++
T Consensus 225 ~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~ 253 (271)
T PRK14238 225 NMQQAARISDKTAFFLNGYVNE-YDDTDKI 253 (271)
T ss_pred CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999975 4454443
No 240
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.96 E-value=4e-29 Score=193.49 Aligned_cols=140 Identities=25% Similarity=0.317 Sum_probs=115.1
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +....++.+++..... ...+++.++++.+|+....+ +
T Consensus 45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-~ 121 (201)
T cd03231 45 ILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPG--IKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-R 121 (201)
T ss_pred HHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccc--cCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-C
Confidence 58999999999998653 246999999864 3444566666543211 13456788899999986554 5
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.++ +.|+|++|||.......|++++.+
T Consensus 122 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 122 PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 89999999999999999999999999999999999999999999999754 689999999999988899998765
No 241
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=9.9e-30 Score=193.73 Aligned_cols=131 Identities=27% Similarity=0.429 Sum_probs=102.7
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA 81 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 81 (184)
+|+|+++|++|+|.+++. .+. + .. ...+.... ..+.++++.+|+.+..+ +++.+|||||+|
T Consensus 44 ~i~G~~~~~~G~v~~~g~-~~~---~-----~~----~~~~~~~i-----~~~~q~l~~~gl~~~~~-~~~~~LS~G~~q 104 (180)
T cd03214 44 TLAGLLKPSSGEILLDGK-DLA---S-----LS----PKELARKI-----AYVPQALELLGLAHLAD-RPFNELSGGERQ 104 (180)
T ss_pred HHhCCCCCCCcEEEECCE-ECC---c-----CC----HHHHHHHH-----hHHHHHHHHcCCHhHhc-CCcccCCHHHHH
Confidence 578999999999987642 111 0 00 00110000 01112788889976554 589999999999
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~ 151 (184)
|++||||++.+|+++||||||++||+.++..+.+.+.+. +.|+|++||+++++..+||+++++++|++..
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999998754 5799999999999999999999999998853
No 242
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.96 E-value=3.2e-29 Score=225.69 Aligned_cols=154 Identities=25% Similarity=0.297 Sum_probs=124.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.|+|+++|++|+|.+++ ++.|||+||++. +. ..|+.+++... ...+.+++.+.++..++.+....
T Consensus 524 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~ 600 (710)
T TIGR03796 524 LVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIF--LF-EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITS 600 (710)
T ss_pred HHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCCh--hh-hccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHh
Confidence 58999999999999864 567999999984 32 45777777543 23456666666666665432211
Q ss_pred ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcC
Q psy11928 70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~ 139 (184)
....+||||||||++||||++.+|+++|||||||+||+.+.+.+.+.+.+.++|+|+|||+++.+.. ||
T Consensus 601 lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D 679 (710)
T TIGR03796 601 RPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CD 679 (710)
T ss_pred CcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CC
Confidence 1356799999999999999999999999999999999999999999998888999999999999875 99
Q ss_pred eEEEEeCCeEEEecCChhHHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~~ 160 (184)
+|++|++|++++ .|+.++..
T Consensus 680 ~Iivl~~G~i~~-~G~~~~Ll 699 (710)
T TIGR03796 680 EIIVLERGKVVQ-RGTHEELW 699 (710)
T ss_pred EEEEEeCCEEEE-ecCHHHHH
Confidence 999999999986 66665544
No 243
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=2.8e-29 Score=221.95 Aligned_cols=154 Identities=23% Similarity=0.288 Sum_probs=124.4
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT- 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 69 (184)
.|+|+++|++|+|.+++ +..|+|+||++. +. ..|+.+++......+.+++.+.++.+|+.+....
T Consensus 386 lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~--lF-~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~l 462 (592)
T PRK10790 386 LLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPV--VL-ADTFLANVTLGRDISEEQVWQALETVQLAELARSL 462 (592)
T ss_pred HHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCc--cc-cchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhc
Confidence 58999999999998864 467999999984 32 3467777665434456777777777776532211
Q ss_pred ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928 70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~ 138 (184)
....+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+.+. ++|+|+|||+++.+.. |
T Consensus 463 p~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~ 541 (592)
T PRK10790 463 PDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-A 541 (592)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-C
Confidence 134679999999999999999999999999999999999999999999765 5899999999998875 8
Q ss_pred CeEEEEeCCeEEEecCChhHHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
|+|++|++|++++ .|+.++..
T Consensus 542 D~ii~l~~G~i~~-~G~~~~L~ 562 (592)
T PRK10790 542 DTILVLHRGQAVE-QGTHQQLL 562 (592)
T ss_pred CEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999986 66665544
No 244
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=1.2e-28 Score=196.61 Aligned_cols=152 Identities=23% Similarity=0.345 Sum_probs=116.4
Q ss_pred cccCc--ccCCceeEEecC-----------C-eEEEEEecCCCCCCCccCCHHHHHHHhc-------C---CC----HHH
Q psy11928 2 YAHCD--LQPQQGELKKNH-----------R-LRIGRFDQHSGEHLTAEETPAEYLQRLF-------N---LP----YEK 53 (184)
Q Consensus 2 ~~~G~--~~p~~G~i~~~~-----------~-~~ig~v~q~~~~~l~~~~~~~~~~~~~~-------~---~~----~~~ 53 (184)
+|+|+ ++|++|+|.+++ + ..++|++|++. +....++.+++.... . .. ..+
T Consensus 52 ~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 129 (252)
T CHL00131 52 VIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPI--EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEI 129 (252)
T ss_pred HHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccc--ccccccHHHHHHHhhhhhhcccccccccHHHHHHH
Confidence 57897 579999998643 1 14788999864 333344444432110 0 11 134
Q ss_pred HHHHHhhCCCCc-cccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEe
Q psy11928 54 ARKQLGTFGLAG-HAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVS 128 (184)
Q Consensus 54 ~~~~l~~~~l~~-~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivs 128 (184)
+.++++.+|+.. ..+ +++. +|||||+|||+||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++|
T Consensus 130 ~~~~l~~~~l~~~~~~-~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~t 208 (252)
T CHL00131 130 INEKLKLVGMDPSFLS-RNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILIT 208 (252)
T ss_pred HHHHHHHcCCchhhhc-cccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 567899999963 344 4676 59999999999999999999999999999999999999999998754 67999999
Q ss_pred cCHHHHHhh-cCeEEEEeCCeEEEecCChh
Q psy11928 129 HDERLIRDT-ECTLWVIENQTIEEIDGDFD 157 (184)
Q Consensus 129 Hd~~~~~~~-~~~i~~l~~g~i~~~~~~~~ 157 (184)
||++++..+ ||++++|++|+++. .++.+
T Consensus 209 H~~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 237 (252)
T CHL00131 209 HYQRLLDYIKPDYVHVMQNGKIIK-TGDAE 237 (252)
T ss_pred cCHHHHHhhhCCEEEEEeCCEEEE-ecChh
Confidence 999999886 89999999999975 45543
No 245
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=198.60 Aligned_cols=153 Identities=21% Similarity=0.181 Sum_probs=119.4
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~ 55 (184)
+|+|+++ |++|+|.+++ +..+||+||++. +.. .++.+++... .+. . ..++.
T Consensus 65 ~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~ 141 (267)
T PRK14237 65 SLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVE 141 (267)
T ss_pred HHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence 5789886 5899997643 335999999864 222 3566655321 111 1 23456
Q ss_pred HHHhhCCCCc----ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 56 KQLGTFGLAG----HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~~----~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
++++.+++.. .. ++++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++||
T Consensus 142 ~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH 220 (267)
T PRK14237 142 TSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTH 220 (267)
T ss_pred HHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 6788888842 23 3589999999999999999999999999999999999999999999998765 479999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++++..+||++++|++|++++ .++..++
T Consensus 221 ~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14237 221 NMQQAARASDYTAFFYLGDLIE-YDKTRNI 249 (267)
T ss_pred CHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999976 4454443
No 246
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=4.3e-29 Score=240.22 Aligned_cols=156 Identities=22% Similarity=0.221 Sum_probs=127.9
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +....|+.+++.. ..+.. ++++.++++.+|++
T Consensus 975 iLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~--L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~ 1052 (2272)
T TIGR01257 975 ILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNI--LFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH 1052 (2272)
T ss_pred HHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence 68999999999998754 346999999864 3344555554432 22222 24567889999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~ 142 (184)
+..+ +++++|||||||||+||+||+.+|+++||||||+|||+.+++.++++|++. +.|||++|||++++..+|||++
T Consensus 1053 ~~~~-~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~ 1131 (2272)
T TIGR01257 1053 HKRN-EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIA 1131 (2272)
T ss_pred hhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE
Confidence 7665 589999999999999999999999999999999999999999999999765 6799999999999999999999
Q ss_pred EEeCCeEEEecCChhHHHH
Q psy11928 143 VIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 143 ~l~~g~i~~~~~~~~~~~~ 161 (184)
+|++|+++. .|+...+.+
T Consensus 1132 iL~~GkL~~-~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1132 IISQGRLYC-SGTPLFLKN 1149 (2272)
T ss_pred EEECCEEEE-ecCHHHHHH
Confidence 999999975 566555544
No 247
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.96 E-value=1.7e-28 Score=195.27 Aligned_cols=153 Identities=22% Similarity=0.307 Sum_probs=114.4
Q ss_pred cccCcc--cCCceeEEecCC------------eEEEEEecCCCCCCCccCCHHHHHHHh------c-C---CC----HHH
Q psy11928 2 YAHCDL--QPQQGELKKNHR------------LRIGRFDQHSGEHLTAEETPAEYLQRL------F-N---LP----YEK 53 (184)
Q Consensus 2 ~~~G~~--~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~~~~~~~~~~------~-~---~~----~~~ 53 (184)
+|+|+. +|++|+|.+++. ..++|++|++. +....+...+.... . . .. .+.
T Consensus 46 ~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (248)
T PRK09580 46 TLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDL 123 (248)
T ss_pred HHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCch--hccchhHHHHHHHhhhhhhcccccccchHHHHHHH
Confidence 588995 699999987541 35999999864 22221222221100 0 0 01 234
Q ss_pred HHHHHhhCCCCccccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928 54 ARKQLGTFGLAGHAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH 129 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH 129 (184)
+.+.++.+++.....++++. +|||||||||+||||++.+|+++||||||++||+.++..+.+.+++. +.|||+|||
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH 203 (248)
T PRK09580 124 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203 (248)
T ss_pred HHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56778888985333344565 89999999999999999999999999999999999999999987653 679999999
Q ss_pred CHHHHHhh-cCeEEEEeCCeEEEecCChh
Q psy11928 130 DERLIRDT-ECTLWVIENQTIEEIDGDFD 157 (184)
Q Consensus 130 d~~~~~~~-~~~i~~l~~g~i~~~~~~~~ 157 (184)
|++++... ||+++++++|+++. .++++
T Consensus 204 ~~~~~~~~~~d~i~~l~~g~i~~-~g~~~ 231 (248)
T PRK09580 204 YQRILDYIKPDYVHVLYQGRIVK-SGDFT 231 (248)
T ss_pred CHHHHHhhhCCEEEEEECCeEEE-eCCHH
Confidence 99999887 89999999999864 55654
No 248
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=196.65 Aligned_cols=154 Identities=20% Similarity=0.194 Sum_probs=118.4
Q ss_pred cccCcccCC-----ceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC-----HHHHH
Q psy11928 2 YAHCDLQPQ-----QGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP-----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~-----~~~~~ 55 (184)
+|+|+++|+ +|+|.+++ +..++|+||++. +.. .++.+++... .+.. .+.+.
T Consensus 49 ~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (251)
T PRK14249 49 ALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN--PFP-KSIFDNVAFGPRMLGTTAQSRLDEVVE 125 (251)
T ss_pred HHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc--cCc-CcHHHHHhhHHHhcCCChhhHHHHHHH
Confidence 578999987 69997542 346999999974 223 2555554321 1111 12345
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
+.++.+++.. ...++++.+||||||||++||||++.+|+++||||||++||+.++..+.++|.++ +.|||+||||
T Consensus 126 ~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~ 205 (251)
T PRK14249 126 KSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHN 205 (251)
T ss_pred HHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5677777642 1223589999999999999999999999999999999999999999999998765 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||++++|++|++.. .++..+.
T Consensus 206 ~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14249 206 MQQAARASDWTGFLLTGDLVE-YGRTGEI 233 (251)
T ss_pred HHHHHhhCCEEEEEeCCeEEE-eCCHHHH
Confidence 999999999999999999975 4554443
No 249
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=3.9e-29 Score=240.54 Aligned_cols=155 Identities=21% Similarity=0.259 Sum_probs=125.4
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ ++.|||+||++. +....|+.+.+. ...+.+. +.+.++++.+|+.
T Consensus 1984 mL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~--L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~ 2061 (2272)
T TIGR01257 1984 MLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDA--IDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS 2061 (2272)
T ss_pred HHhCCCCCCccEEEECCEECcchHHHHhhhEEEEecccc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH
Confidence 68999999999998754 245999999864 333445544432 2223322 3456789999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
+..+ +++++||||||||++||+||+.+|+++||||||+|||+.+++.+++.|.+. +.|||++||++++++.+||++
T Consensus 2062 ~~~d-k~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV 2140 (2272)
T TIGR01257 2062 LYAD-RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL 2140 (2272)
T ss_pred HHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 7665 589999999999999999999999999999999999999999999998754 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
++|++|++.. .|+...+.
T Consensus 2141 ~IL~~G~i~~-~Gs~q~Lk 2158 (2272)
T TIGR01257 2141 AIMVKGAFQC-LGTIQHLK 2158 (2272)
T ss_pred EEEECCEEEE-ECCHHHHH
Confidence 9999999875 45554443
No 250
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=9.4e-29 Score=195.47 Aligned_cols=152 Identities=23% Similarity=0.295 Sum_probs=114.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHH---------hh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQL---------GT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l---------~~ 60 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +. ..++.+++.... ......+...+ ..
T Consensus 46 ~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (236)
T cd03253 46 LLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV--LF-NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMR 122 (236)
T ss_pred HHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCCh--hh-cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 58999999999998754 235999999974 32 246666654321 11222222222 22
Q ss_pred C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
+ +++.... +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||++||+.+++..
T Consensus 123 l~~~~~~~~~-~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 123 FPDGYDTIVG-ERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred ccccccchhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 2 3333333 468899999999999999999999999999999999999999999998754 6799999999999975
Q ss_pred hcCeEEEEeCCeEEEecCChhHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|++.. .++.+++
T Consensus 202 -~d~~~~l~~g~i~~-~~~~~~~ 222 (236)
T cd03253 202 -ADKIIVLKDGRIVE-RGTHEEL 222 (236)
T ss_pred -CCEEEEEECCEEEe-eCCHHHH
Confidence 99999999999864 4555444
No 251
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.5e-29 Score=213.78 Aligned_cols=153 Identities=28% Similarity=0.360 Sum_probs=123.5
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.|+|+.+|++|+|.+++ +++++|++|+|. + ..-|+.+++.... ..+++++.+.++..|+.+....
T Consensus 366 lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~--l-f~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~ 442 (559)
T COG4988 366 LLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY--L-FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK 442 (559)
T ss_pred HHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCc--c-ccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC
Confidence 58999999999999874 467999999985 2 2345667765432 3456777777777776543321
Q ss_pred -----c----cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928 70 -----I----KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 70 -----~----~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~ 138 (184)
. .-..|||||+|||++||||+.+++++|+||||++||.++.+.+.+.|.+. ++|+|++||++..+.. +
T Consensus 443 p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~ 521 (559)
T COG4988 443 PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-A 521 (559)
T ss_pred CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-C
Confidence 1 23459999999999999999999999999999999999999999999765 5899999999999986 7
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|+|++|++|++++ .|..++.
T Consensus 522 D~I~vld~G~l~~-~g~~~~L 541 (559)
T COG4988 522 DRIVVLDNGRLVE-QGTHEEL 541 (559)
T ss_pred CEEEEecCCceec-cCCHHHH
Confidence 9999999999986 5665554
No 252
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=3.2e-29 Score=223.47 Aligned_cols=156 Identities=25% Similarity=0.292 Sum_probs=123.9
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH- 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~- 68 (184)
.|+|+++|++|+|.+++ |+.||||+|++. + ..-++.+++.... ..+.+++.+.+...|..++..
T Consensus 518 LL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~--L-f~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~ 594 (709)
T COG2274 518 LLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF--L-FSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIEN 594 (709)
T ss_pred HHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch--h-hcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 57899999999999874 678999999974 2 2345677765432 234455555554444433221
Q ss_pred ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhh
Q psy11928 69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDT 137 (184)
Q Consensus 69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~ 137 (184)
...-..||||||||++|||||+++|+|||||||||+||+.+.+.+.+.+.+.. .|+|+|||.+..+. .
T Consensus 595 lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~ 673 (709)
T COG2274 595 LPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-S 673 (709)
T ss_pred cccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-h
Confidence 12467899999999999999999999999999999999999999999998874 89999999999997 5
Q ss_pred cCeEEEEeCCeEEEecCChhHHHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYRKE 162 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~~~ 162 (184)
||+|++|++|++++ .|+.++....
T Consensus 674 adrIiVl~~Gkiv~-~gs~~ell~~ 697 (709)
T COG2274 674 ADRIIVLDQGKIVE-QGSHEELLAQ 697 (709)
T ss_pred ccEEEEccCCceec-cCCHHHHHHh
Confidence 89999999999986 7776665543
No 253
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=6.4e-29 Score=187.09 Aligned_cols=119 Identities=27% Similarity=0.216 Sum_probs=102.6
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA 81 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 81 (184)
+|+|+++|++|+|.++....++|++|++. +. ..++.+++... ++.+|||||||
T Consensus 46 ~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~------------------------~~~~LS~G~~~ 98 (166)
T cd03223 46 ALAGLWPWGSGRIGMPEGEDLLFLPQRPY--LP-LGTLREQLIYP------------------------WDDVLSGGEQQ 98 (166)
T ss_pred HHhcCCCCCCceEEECCCceEEEECCCCc--cc-cccHHHHhhcc------------------------CCCCCCHHHHH
Confidence 58999999999999988888999999874 22 34555543210 36889999999
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
|++||||++.+|+++||||||++||+.++..+.+.+.+.+.|+|++|||.++. ..||++++++++.
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 99999999999999999999999999999999999998889999999999876 5899999998763
No 254
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=5.4e-29 Score=189.96 Aligned_cols=122 Identities=25% Similarity=0.308 Sum_probs=100.6
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 68 (184)
+|+|+++|++|+|.+++ +..++|+||++. ..+....++.+++.... .
T Consensus 45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~----~---------------- 104 (182)
T cd03215 45 ALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS----L---------------- 104 (182)
T ss_pred HHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh----h----------------
Confidence 68999999999998653 236999999853 12334445555432210 0
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIE 145 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~ 145 (184)
||||||||++||||++.+|+++||||||++||+.+++.+.+.+.+. +.|+|++||+++++..+|+++++++
T Consensus 105 ------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~ 178 (182)
T cd03215 105 ------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMY 178 (182)
T ss_pred ------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEec
Confidence 9999999999999999999999999999999999999999998764 5799999999999999999999999
Q ss_pred CCeE
Q psy11928 146 NQTI 149 (184)
Q Consensus 146 ~g~i 149 (184)
+|++
T Consensus 179 ~G~i 182 (182)
T cd03215 179 EGRI 182 (182)
T ss_pred CCcC
Confidence 9864
No 255
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=197.97 Aligned_cols=154 Identities=24% Similarity=0.241 Sum_probs=119.6
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~ 55 (184)
+|+|+.+ |++|+|.+++ +..++|+||++. +... ++.+++... .+. . .+++.
T Consensus 70 ~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~ 146 (272)
T PRK14236 70 CFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVE 146 (272)
T ss_pred HHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 5789887 4899997642 346999999874 2233 665554321 111 1 13466
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++.. ...++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ +.|||++||+
T Consensus 147 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~ 226 (272)
T PRK14236 147 RSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHN 226 (272)
T ss_pred HHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 7788888853 1223578999999999999999999999999999999999999999999999765 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+||++++|++|+++. .++.+++
T Consensus 227 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 254 (272)
T PRK14236 227 MQQAARVSDYTAFMYMGKLVE-YGDTDTL 254 (272)
T ss_pred HHHHHhhCCEEEEEECCEEEe-cCCHHHH
Confidence 999999999999999999975 4554443
No 256
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.96 E-value=1e-28 Score=194.27 Aligned_cols=146 Identities=25% Similarity=0.253 Sum_probs=112.7
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCCcccccccccC
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLAGHAHTIKMKD 74 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~ 74 (184)
+|+|+.+|++|+|.+++.. +....+.. .+.+..++.+++.. .++... +++.++++.+++.+..+ +++.+
T Consensus 67 ~l~G~~~p~~G~i~~~g~~-~~~~~~~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~ 142 (224)
T cd03220 67 LLAGIYPPDSGTVTVRGRV-SSLLGLGG--GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-LPVKT 142 (224)
T ss_pred HHhCCCCCCceEEEECCEE-chhhcccc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhh
Confidence 5899999999999987532 22111111 12233455444321 122221 34567888899976654 58999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~ 151 (184)
||||||||++||||++.+|+++||||||+|||+.++..+.+.+.+. +.|||++||+++++..+||+++++++|++..
T Consensus 143 LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 143 YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999988654 5799999999999999999999999999864
No 257
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=197.81 Aligned_cols=154 Identities=20% Similarity=0.181 Sum_probs=117.1
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC---HHHHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP---YEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~---~~~~~~~ 57 (184)
+|+|+.. |++|+|.+++ +..++|++|++. +.. .++.+++... .... .+++.++
T Consensus 55 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 131 (264)
T PRK14243 55 CFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERS 131 (264)
T ss_pred HHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHH
Confidence 5778875 4899998653 235999999874 222 3555554321 1111 2345556
Q ss_pred HhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHH
Q psy11928 58 LGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDER 132 (184)
Q Consensus 58 l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~ 132 (184)
++.+++.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++
T Consensus 132 l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~ 211 (264)
T PRK14243 132 LRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQ 211 (264)
T ss_pred HHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 77777732 1223578999999999999999999999999999999999999999999999765 479999999999
Q ss_pred HHHhhcCeEEEEe---------CCeEEEecCChhHH
Q psy11928 133 LIRDTECTLWVIE---------NQTIEEIDGDFDDY 159 (184)
Q Consensus 133 ~~~~~~~~i~~l~---------~g~i~~~~~~~~~~ 159 (184)
++..+||++++|+ +|++++ .++..++
T Consensus 212 ~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~~~~~ 246 (264)
T PRK14243 212 QAARVSDMTAFFNVELTEGGGRYGYLVE-FDRTEKI 246 (264)
T ss_pred HHHHhCCEEEEEecccccccccCceEEE-eCCHHHH
Confidence 9999999999998 788875 4555444
No 258
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=8.1e-29 Score=218.88 Aligned_cols=152 Identities=26% Similarity=0.322 Sum_probs=121.9
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCc----
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAG---- 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~---- 65 (184)
.|+|++ |++|+|.+++ ++.|+|++|++. +. ..|+.+++... ...+++++.+.++..++.+
T Consensus 395 lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--LF-~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~ 470 (588)
T PRK11174 395 ALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQ--LP-HGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPL 470 (588)
T ss_pred HHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCc--CC-CcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHh
Confidence 578999 9999998765 457999999984 32 45777877653 2345666666666655432
Q ss_pred -------ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 66 -------HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 66 -------~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
... ....+||||||||++||||++.+|+++|||||||+||+.+.+.+.+.+.+. ++|+|+|||+++.+..
T Consensus 471 lp~G~dT~vg-e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~ 549 (588)
T PRK11174 471 LPQGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ 549 (588)
T ss_pred cccccccccc-cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh
Confidence 221 135679999999999999999999999999999999999999999999775 5799999999998875
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||+|+++++|++++ .|+.++..
T Consensus 550 -aD~Iivl~~G~i~e-~G~~~eL~ 571 (588)
T PRK11174 550 -WDQIWVMQDGQIVQ-QGDYAELS 571 (588)
T ss_pred -CCEEEEEeCCeEee-cCCHHHHH
Confidence 89999999999976 67766554
No 259
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.8e-29 Score=189.89 Aligned_cols=148 Identities=24% Similarity=0.318 Sum_probs=120.1
Q ss_pred CcccCcccCCceeEEecCC------eEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCCCCccc
Q psy11928 1 MYAHCDLQPQQGELKKNHR------LRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFGLAGHA 67 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~l~~~~ 67 (184)
++++|+.+|+.|+|..+++ ..-|.|||++. +.++.|+.++.. ...+..+ +.+.+++..+|+.+..
T Consensus 49 nl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~--LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~ 126 (259)
T COG4525 49 NLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEA--LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE 126 (259)
T ss_pred HHHhcCcCcccceEEECCEeccCCCccceeEeccCc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc
Confidence 3689999999999988764 24699999975 444555444432 3334433 3467889999998776
Q ss_pred ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecCHHHHHhhcCeEEE
Q psy11928 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l----~~~~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
+ +++-+|||||||||.|||||+.+|+.|+||||+++||.-+++.+.+++ ++.++.+++||||++++.-+++++++
T Consensus 127 ~-~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvv 205 (259)
T COG4525 127 H-KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVV 205 (259)
T ss_pred c-cceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEE
Confidence 5 689999999999999999999999999999999999999988776665 45589999999999999999999999
Q ss_pred EeC--CeEEE
Q psy11928 144 IEN--QTIEE 151 (184)
Q Consensus 144 l~~--g~i~~ 151 (184)
|.. |+|++
T Consensus 206 lsp~pgRvv~ 215 (259)
T COG4525 206 LSPGPGRVVE 215 (259)
T ss_pred ecCCCceeeE
Confidence 975 67754
No 260
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-28 Score=196.76 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=120.3
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC---HHHHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP---YEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~---~~~~~~~ 57 (184)
+|+|+++| ++|+|.+++ +..++|+||++. +. ..++.+++... .... .+++.++
T Consensus 53 ~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ 129 (261)
T PRK14263 53 SLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHA 129 (261)
T ss_pred HHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHH
Confidence 57899886 799997653 235999999874 22 35555554321 1111 2456778
Q ss_pred HhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHH
Q psy11928 58 LGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDER 132 (184)
Q Consensus 58 l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~ 132 (184)
++.+++... ..++++.+|||||+||++||||++.+|+++||||||+|||+.++.++.+.|++. +.|+|++||+++
T Consensus 130 l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~ 209 (261)
T PRK14263 130 LQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ 209 (261)
T ss_pred HHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 899988532 123478999999999999999999999999999999999999999999999875 469999999999
Q ss_pred HHHhhcCeEEEEe--------CCeEEEecCChhHH
Q psy11928 133 LIRDTECTLWVIE--------NQTIEEIDGDFDDY 159 (184)
Q Consensus 133 ~~~~~~~~i~~l~--------~g~i~~~~~~~~~~ 159 (184)
++..+||++++|+ +|++++ .++.+++
T Consensus 210 ~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~~~~~ 243 (261)
T PRK14263 210 QAIRVADTTAFFSVDISQGTRTGYLVE-MGPTAQI 243 (261)
T ss_pred HHHHhCCEEEEEecccccccCCceEEE-eCCHHHH
Confidence 9999999999996 799876 4555544
No 261
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.2e-28 Score=195.27 Aligned_cols=148 Identities=23% Similarity=0.228 Sum_probs=114.2
Q ss_pred cccCccc--C---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDLQ--P---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+.+ | ++|+|.+++ +..++|++|++. +.. .++.+++.. ..+. . .+++.
T Consensus 50 ~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~ 126 (252)
T PRK14255 50 TLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVE 126 (252)
T ss_pred HHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5788864 5 589997643 236999999874 223 355555432 1121 1 12345
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
+.++.+++.. ...++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||
T Consensus 127 ~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~ 206 (252)
T PRK14255 127 TSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS 206 (252)
T ss_pred HHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECC
Confidence 5677777631 1223578999999999999999999999999999999999999999999999765 4799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEe
Q psy11928 131 ERLIRDTECTLWVIENQTIEEI 152 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~ 152 (184)
++++..+||++++|++|+++..
T Consensus 207 ~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 207 MHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999764
No 262
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-28 Score=196.29 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=119.1
Q ss_pred cccCcccCC-----ceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928 2 YAHCDLQPQ-----QGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~ 55 (184)
+|+|+.+|+ +|+|.+++ +..++|+||++. +.. .++.+++... .+. . .+.+.
T Consensus 52 ~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 128 (261)
T PRK14258 52 CLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVE 128 (261)
T ss_pred HHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 578999885 78886532 235999999864 333 4666554321 111 1 13456
Q ss_pred HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11928 56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVS 128 (184)
Q Consensus 56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivs 128 (184)
++++.+++... ..++++.+|||||+||++|||+++.+|+++||||||+|||+.++..+.+.|.+ .+.|||+||
T Consensus 129 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 129 SALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 77888887431 22457899999999999999999999999999999999999999999998875 368999999
Q ss_pred cCHHHHHhhcCeEEEEeC-----CeEEEecCChhHH
Q psy11928 129 HDERLIRDTECTLWVIEN-----QTIEEIDGDFDDY 159 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~-----g~i~~~~~~~~~~ 159 (184)
||++++..+||++++|++ |+++. .++.++.
T Consensus 209 H~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~ 243 (261)
T PRK14258 209 HNLHQVSRLSDFTAFFKGNENRIGQLVE-FGLTKKI 243 (261)
T ss_pred CCHHHHHHhcCEEEEEccCCCcCceEEE-eCCHHHH
Confidence 999999999999999999 99875 4555444
No 263
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.96 E-value=5.9e-29 Score=195.51 Aligned_cols=143 Identities=26% Similarity=0.386 Sum_probs=112.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHH---------HHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYE---------KARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~---------~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ +..++|++|++. +.. .++.+++..... .... .+.++++.
T Consensus 59 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (226)
T cd03248 59 LLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPV--LFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISE 135 (226)
T ss_pred HHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccH--HHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHh
Confidence 58999999999998764 246999999874 222 355555432111 1111 13456777
Q ss_pred C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
+ |++.... +++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.+.+. +.|+|++|||++++..
T Consensus 136 l~~gl~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 214 (226)
T cd03248 136 LASGYDTEVG-EKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER 214 (226)
T ss_pred ccccccchhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 7 7766554 479999999999999999999999999999999999999999999999765 4699999999999975
Q ss_pred hcCeEEEEeCCeE
Q psy11928 137 TECTLWVIENQTI 149 (184)
Q Consensus 137 ~~~~i~~l~~g~i 149 (184)
||++++|++|++
T Consensus 215 -~d~i~~l~~g~i 226 (226)
T cd03248 215 -ADQILVLDGGRI 226 (226)
T ss_pred -CCEEEEecCCcC
Confidence 999999999864
No 264
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-28 Score=197.07 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=117.4
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC---CHHHHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL---PYEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~---~~~~~~~~ 57 (184)
+|+|+.+| ++|+|.+++ +..++|+||++. +.. .++.+++... ... ..+.+.+.
T Consensus 65 ~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~ 141 (274)
T PRK14265 65 CFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDS 141 (274)
T ss_pred HHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHH
Confidence 57888763 689997643 246999999874 222 2555554321 111 12334566
Q ss_pred HhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928 58 LGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE 131 (184)
Q Consensus 58 l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~ 131 (184)
++.+++. +.. ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||+
T Consensus 142 l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~ 220 (274)
T PRK14265 142 LRRAAIWEEVKDKL-KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220 (274)
T ss_pred HHHcccchhhHHHh-cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 7777763 223 3578999999999999999999999999999999999999999999999865 57999999999
Q ss_pred HHHHhhcCeEEEEe---------CCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVIE---------NQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l~---------~g~i~~~~~~~~~~ 159 (184)
+++..+||++++|+ +|++++ .++..+.
T Consensus 221 ~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g~~~~~ 256 (274)
T PRK14265 221 QQASRVADWTAFFNTEIDEYGKRRGKLVE-FSPTEQM 256 (274)
T ss_pred HHHHHhCCEEEEEecccccccccCceEEE-eCCHHHH
Confidence 99999999999998 799875 4555443
No 265
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.2e-28 Score=202.27 Aligned_cols=153 Identities=24% Similarity=0.234 Sum_probs=118.6
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH-H----HHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY-E----KAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~-~----~~~ 55 (184)
.|+|+.+ |++|+|.+++ +..++|+||++. +. ..++.+++.. ..+... + .+.
T Consensus 127 ~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~--~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~ 203 (329)
T PRK14257 127 NLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT--PF-EMSIFDNVAYGPRNNGINDRKILEKIVE 203 (329)
T ss_pred HHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc--cC-CCcHHHHHHhHHHhcCCChHHHHHHHHH
Confidence 4678875 6799997532 346999999974 22 2456655542 111221 1 245
Q ss_pred HHHhhCCCCc----ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 56 KQLGTFGLAG----HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~~----~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
+.++.+++.. ... +++.+||||||||++||||++.+|+||||||||++||+.+...+.+.|.+. +.|||+|||
T Consensus 204 ~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH 282 (329)
T PRK14257 204 KSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTH 282 (329)
T ss_pred HHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6678877632 233 579999999999999999999999999999999999999999999999765 479999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++++..+||+|++|++|++++ .|++.++
T Consensus 283 ~l~~i~~~~Driivl~~G~i~e-~g~~~~l 311 (329)
T PRK14257 283 SMAQAQRISDETVFFYQGWIEE-AGETKTI 311 (329)
T ss_pred CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999986 5555543
No 266
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=1.5e-28 Score=190.47 Aligned_cols=140 Identities=22% Similarity=0.251 Sum_probs=107.8
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCC-----------Ccccccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGL-----------AGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~ 70 (184)
+|+|+.+|++|+|.+++ +|||++|++. +. ..++.+++........++..+.++.+++ +.... +
T Consensus 50 ~i~G~~~~~~G~i~~~g--~i~~~~q~~~--l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~ 123 (204)
T cd03250 50 ALLGELEKLSGSVSVPG--SIAYVSQEPW--IQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIG-E 123 (204)
T ss_pred HHhCcCCCCCCeEEEcC--EEEEEecCch--hc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceec-C
Confidence 58999999999999877 7999999974 22 3466666543222222233333333333 22233 3
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD-AINEY---KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
++.+||+|||||++||||++.+|+++||||||++||+.+++.+.+ ++.+. +.|||++||+++.+.. |+++++|++
T Consensus 124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~ 202 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDN 202 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeC
Confidence 679999999999999999999999999999999999999998887 45432 5799999999999997 999999998
Q ss_pred Ce
Q psy11928 147 QT 148 (184)
Q Consensus 147 g~ 148 (184)
|+
T Consensus 203 G~ 204 (204)
T cd03250 203 GR 204 (204)
T ss_pred CC
Confidence 84
No 267
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=1.7e-28 Score=196.61 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=115.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHH---------HHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARK---------QLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~ 61 (184)
+|+|+++|++|+|.+++ +..++|++|++. +.. .++.+++.........++.+ .++.+
T Consensus 66 ~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (257)
T cd03288 66 AFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPI--LFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSL 142 (257)
T ss_pred HHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCc--ccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhc
Confidence 58999999999998753 346999999874 322 35544432111111222222 33333
Q ss_pred --CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 62 --GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 --~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
|++.... .++.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.+.+. +.|||++||+++.+..
T Consensus 143 ~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~- 220 (257)
T cd03288 143 PGGLDAVVT-EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD- 220 (257)
T ss_pred ccccCcEec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-
Confidence 4443333 367899999999999999999999999999999999999999999998764 6799999999999986
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||++++|++|+++. .++.+++.
T Consensus 221 ~dri~~l~~G~i~~-~g~~~~~~ 242 (257)
T cd03288 221 ADLVLVLSRGILVE-CDTPENLL 242 (257)
T ss_pred CCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999975 56655543
No 268
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.96 E-value=8.4e-29 Score=218.48 Aligned_cols=155 Identities=23% Similarity=0.271 Sum_probs=122.9
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~ 68 (184)
.|+|+++|++|+|.+++ +..|+|+||++. +. ..|+.+++.... ..+.+++.+.++..|+.+...
T Consensus 388 ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~ 464 (582)
T PRK11176 388 LLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVH--LF-NDTIANNIAYARTEQYSREQIEEAARMAYAMDFIN 464 (582)
T ss_pred HHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCce--ee-cchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 58999999999998764 357999999984 32 356777775421 245667777777766543211
Q ss_pred c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
+ ....+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+. ++|+|+|||+++.+.
T Consensus 465 ~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~- 543 (582)
T PRK11176 465 KMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE- 543 (582)
T ss_pred hcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-
Confidence 1 123679999999999999999999999999999999999999999999775 579999999998886
Q ss_pred hcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
.||+|+++++|++.+ .|+.+++.+
T Consensus 544 ~~D~Ii~l~~g~i~e-~g~~~~l~~ 567 (582)
T PRK11176 544 KADEILVVEDGEIVE-RGTHAELLA 567 (582)
T ss_pred hCCEEEEEECCEEEE-eCCHHHHHh
Confidence 499999999999986 666665543
No 269
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=2.4e-28 Score=191.16 Aligned_cols=143 Identities=18% Similarity=0.261 Sum_probs=108.5
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcc
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 66 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +. ..++.+++.........+..+.++.+++...
T Consensus 46 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~ 122 (218)
T cd03290 46 AILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW--LL-NATVEENITFGSPFNKQRYKAVTDACSLQPD 122 (218)
T ss_pred HHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCc--cc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHH
Confidence 58999999999998643 146999999874 32 3466666543222223334455555555321
Q ss_pred c----------ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH--HHH---hcCcEEEEEecCH
Q psy11928 67 A----------HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD--AIN---EYKGGVIIVSHDE 131 (184)
Q Consensus 67 ~----------~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~--~l~---~~~~tiiivsHd~ 131 (184)
. ...++.+|||||||||+||||++.+|+++||||||++||+.++..+++ ++. +.+.|+|++||+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~ 202 (218)
T cd03290 123 IDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKL 202 (218)
T ss_pred HHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCh
Confidence 1 123689999999999999999999999999999999999999998877 443 3468999999999
Q ss_pred HHHHhhcCeEEEEeCCe
Q psy11928 132 RLIRDTECTLWVIENQT 148 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~ 148 (184)
+++. .||+++++++|.
T Consensus 203 ~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 203 QYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHh-hCCEEEEecCCC
Confidence 9986 699999998873
No 270
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=5.8e-29 Score=196.90 Aligned_cols=145 Identities=24% Similarity=0.302 Sum_probs=117.3
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA 81 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 81 (184)
.+.|+++|++|+|.+++..- . .+. .....+++.++|+.+|+......+++++|||||+|
T Consensus 58 ~i~~L~~pt~G~i~f~g~~i-~--------~~~------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 58 LILGLEEPTSGEILFEGKDI-T--------KLS------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred HHHcCcCCCCceEEEcCcch-h--------hcc------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 57899999999998764330 0 011 00113568899999999876566799999999999
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecC---
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDG--- 154 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~--- 154 (184)
|+.|||||+.+|+++++|||+|+||...+.++.+++.+ ++.|.+++|||+..+..+||++.+|..|++++...
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 99999999999999999999999999999999998864 47899999999999999999999999999988542
Q ss_pred ----ChhHHHHHHHHHh
Q psy11928 155 ----DFDDYRKELLEAL 167 (184)
Q Consensus 155 ----~~~~~~~~~~~~~ 167 (184)
+...|.+.+++..
T Consensus 197 ~~~~p~HpYTk~Ll~a~ 213 (268)
T COG4608 197 VFSNPLHPYTKALLSAV 213 (268)
T ss_pred HhhCCCCHHHHHHHHhC
Confidence 2345666555544
No 271
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.8e-28 Score=185.67 Aligned_cols=116 Identities=33% Similarity=0.424 Sum_probs=99.3
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccccc
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK 71 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 71 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +....++.+++.
T Consensus 45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~~~--------------------------- 95 (173)
T cd03230 45 IILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS--LYENLTVRENLK--------------------------- 95 (173)
T ss_pred HHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCc--cccCCcHHHHhh---------------------------
Confidence 58999999999998653 246999999863 334445544431
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
|||||+||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|+|++|||.+++..+||+++++++|+
T Consensus 96 ---LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 96 ---LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred ---cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999764 5799999999999999999999999986
Q ss_pred E
Q psy11928 149 I 149 (184)
Q Consensus 149 i 149 (184)
+
T Consensus 173 i 173 (173)
T cd03230 173 I 173 (173)
T ss_pred C
Confidence 4
No 272
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.6e-28 Score=194.32 Aligned_cols=154 Identities=20% Similarity=0.143 Sum_probs=118.6
Q ss_pred cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC-CC----HHHHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN-LP----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~-~~----~~~~~ 55 (184)
+|+|+++| ++|+|.+++ +..++|+||++. +.. .++.+++... .+ .. .+.+.
T Consensus 52 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 128 (259)
T PRK14260 52 TLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVE 128 (259)
T ss_pred HHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 57898885 489998653 135999999874 333 5666554321 11 11 13456
Q ss_pred HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+++.. ...++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||++|||
T Consensus 129 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~ 208 (259)
T PRK14260 129 SALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208 (259)
T ss_pred HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7788888742 1223578999999999999999999999999999999999999999999999765 4799999999
Q ss_pred HHHHHhhcCeEEEEe-----CCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIE-----NQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~-----~g~i~~~~~~~~~~ 159 (184)
++++..+||++++|+ +|+++. .++..++
T Consensus 209 ~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~ 241 (259)
T PRK14260 209 MQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQI 241 (259)
T ss_pred HHHHHHhcCeEEEEeccCCCCceEEE-eCCHHHH
Confidence 999999999999997 599875 4555443
No 273
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.5e-28 Score=194.47 Aligned_cols=153 Identities=21% Similarity=0.219 Sum_probs=117.5
Q ss_pred cccCcccC-----CceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC-----HHH
Q psy11928 2 YAHCDLQP-----QQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP-----YEK 53 (184)
Q Consensus 2 ~~~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~-----~~~ 53 (184)
+|+|+.+| ++|+|.+++ +..+||++|++. +... ++.+++... .+.. .++
T Consensus 61 ~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~-tv~eni~~~~~~~~~~~~~~~~~~ 137 (265)
T PRK14252 61 CFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN--PFPK-SIFENVAYGLRIRGVKRRSILEER 137 (265)
T ss_pred HHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc--CCcc-hHHHHHHhHHHHcCCChHHHHHHH
Confidence 57898875 799997642 235999999874 2232 555554321 1111 234
Q ss_pred HHHHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEe
Q psy11928 54 ARKQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVS 128 (184)
Q Consensus 54 ~~~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivs 128 (184)
+.++++.+++.. ...++++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||+||
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivt 217 (265)
T PRK14252 138 VENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVT 217 (265)
T ss_pred HHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 566777777631 1223578999999999999999999999999999999999999999999999765 46999999
Q ss_pred cCHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 129 HDERLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
|+++++..+||+++++++|++.. .++.++
T Consensus 218 h~~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 246 (265)
T PRK14252 218 HNMQQAARVSDYTAYMYMGELIE-FGATDT 246 (265)
T ss_pred cCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 99999999999999999999976 444444
No 274
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=5.2e-28 Score=208.23 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=117.1
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCCcccccccccC
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLAGHAHTIKMKD 74 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~ 74 (184)
+|+|+.+|++|+|.+++... ++.+.+ .+....++.+++.. ..+... +.+.++++.+++....+ +++.+
T Consensus 69 iLaGLl~P~sGeI~I~G~~~--~i~~~~--~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-~~~~~ 143 (549)
T PRK13545 69 LIAGVTMPNKGTVDIKGSAA--LIAISS--GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-QPVKT 143 (549)
T ss_pred HHhCCCCCCceEEEECCEee--eEEecc--ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-CCccc
Confidence 58999999999999876431 222222 12233455554322 122222 23556889999976655 58999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~ 151 (184)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++..
T Consensus 144 LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~ 223 (549)
T PRK13545 144 YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE 223 (549)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998654 6799999999999999999999999999875
Q ss_pred ecCChhHH
Q psy11928 152 IDGDFDDY 159 (184)
Q Consensus 152 ~~~~~~~~ 159 (184)
.++.++.
T Consensus 224 -~G~~~el 230 (549)
T PRK13545 224 -YGDIKEV 230 (549)
T ss_pred -ECCHHHH
Confidence 4555443
No 275
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.8e-28 Score=198.06 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=118.3
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHhc---------------C
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---------------N 48 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---------------~ 48 (184)
+|+|+++ |++|+|.+++ +..++|+||++. +.. .++.+++.... .
T Consensus 90 ~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 166 (305)
T PRK14264 90 CLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN--PFP-KSIRENISYGPRKHGDINTGLLARLLG 166 (305)
T ss_pred HHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc--ccc-ccHHHHHHhHHhhcccccccccccccc
Confidence 5789886 6899998653 236999999874 222 35555543210 0
Q ss_pred CC-----HHHHHHHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 49 LP-----YEKARKQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 49 ~~-----~~~~~~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
.. .+.+.++++.+++. ... ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 167 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~ 245 (305)
T PRK14264 167 RDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE 245 (305)
T ss_pred cCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 10 23466778888874 223 357899999999999999999999999999999999999999999999987
Q ss_pred c--CcEEEEEecCHHHHHhhcCeE-EEEeCCeEEEecCChhHH
Q psy11928 120 Y--KGGVIIVSHDERLIRDTECTL-WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 120 ~--~~tiiivsHd~~~~~~~~~~i-~~l~~g~i~~~~~~~~~~ 159 (184)
+ +.|||+||||++++..+|+++ +++++|+++. .++.+++
T Consensus 246 ~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~-~g~~~~~ 287 (305)
T PRK14264 246 LAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE-YDDTDKI 287 (305)
T ss_pred HhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE-eCCHHHH
Confidence 6 469999999999999999996 5779999975 5555544
No 276
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.96 E-value=1.3e-28 Score=186.40 Aligned_cols=113 Identities=28% Similarity=0.472 Sum_probs=95.9
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+++|++|+|.+++ +..++|++|++. +.. .++.+++
T Consensus 47 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~l--------------------------- 96 (173)
T cd03246 47 LILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE--LFS-GSIAENI--------------------------- 96 (173)
T ss_pred HHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCc--ccc-CcHHHHC---------------------------
Confidence 58899999999998764 346899999863 222 2444332
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
|||||+||++||||++.+|+++||||||++||+.++..+.+.+.+. +.|||+||||.+++. .||++++|++|
T Consensus 97 ----LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G 171 (173)
T cd03246 97 ----LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDG 171 (173)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 9999999999999999999999999999999999999999998654 579999999999985 79999999998
Q ss_pred eE
Q psy11928 148 TI 149 (184)
Q Consensus 148 ~i 149 (184)
++
T Consensus 172 ~i 173 (173)
T cd03246 172 RV 173 (173)
T ss_pred CC
Confidence 64
No 277
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=3.5e-28 Score=200.62 Aligned_cols=147 Identities=27% Similarity=0.379 Sum_probs=117.0
Q ss_pred eEEEEEecCCCCCCCccCCHHH----HHHHhcCCC----HHHHHHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHH
Q psy11928 20 LRIGRFDQHSGEHLTAEETPAE----YLQRLFNLP----YEKARKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELT 89 (184)
Q Consensus 20 ~~ig~v~q~~~~~l~~~~~~~~----~~~~~~~~~----~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral 89 (184)
.+|+++||+|...+.+-.++.. .+....+.. ++++.++|+.+|+.+. ..+.+|++|||||||||.||.||
T Consensus 93 ~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMAL 172 (534)
T COG4172 93 NKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMAL 172 (534)
T ss_pred cceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHH
Confidence 4799999999655666555432 232223333 3567789999999642 22458999999999999999999
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecC-------ChhH
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDG-------DFDD 158 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~-------~~~~ 158 (184)
+++|++||.||||.+||...+.+++++|++ +|.++++||||+..+.+++|+|++|..|++++.+. +...
T Consensus 173 an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHp 252 (534)
T COG4172 173 ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHP 252 (534)
T ss_pred cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCCh
Confidence 999999999999999999999999999975 47899999999999999999999999999987332 2345
Q ss_pred HHHHHHHH
Q psy11928 159 YRKELLEA 166 (184)
Q Consensus 159 ~~~~~~~~ 166 (184)
|.+.+++.
T Consensus 253 YTr~Ll~a 260 (534)
T COG4172 253 YTRKLLAA 260 (534)
T ss_pred HHHHHHhc
Confidence 66666554
No 278
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=3.1e-28 Score=214.78 Aligned_cols=153 Identities=26% Similarity=0.331 Sum_probs=125.3
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.|+|+++|++|+|.+++ +..|+|++|++. +. ..|+.+++... ...+.+++.+.++.+++.+....
T Consensus 385 ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 385 LLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH--LF-SATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred HHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccch--hh-cccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 58999999999998764 356999999984 32 34777776543 23456778888888888654321
Q ss_pred ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928 70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~ 138 (184)
....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. ++|+|+|||+++.+.. |
T Consensus 462 p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~ 540 (574)
T PRK11160 462 DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-F 540 (574)
T ss_pred ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-C
Confidence 135679999999999999999999999999999999999999999999865 6799999999999875 9
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|+|++|++|++++ .|+.++.
T Consensus 541 d~i~~l~~G~i~~-~g~~~~l 560 (574)
T PRK11160 541 DRICVMDNGQIIE-QGTHQEL 560 (574)
T ss_pred CEEEEEeCCeEEE-eCCHHHH
Confidence 9999999999986 5665544
No 279
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.96 E-value=2.9e-28 Score=219.04 Aligned_cols=154 Identities=25% Similarity=0.328 Sum_probs=123.4
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.|+|+++|++|+|.+++ +..+||++|++. +. ..|+.+++.... ..+.+++.+.++..++.+....
T Consensus 510 lL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~--lf-~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~ 586 (694)
T TIGR03375 510 LLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPR--LF-YGTLRDNIALGAPYADDEEILRAAELAGVTEFVRR 586 (694)
T ss_pred HHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChh--hh-hhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHh
Confidence 57899999999998864 467999999984 32 347777776432 2456677777766665432211
Q ss_pred ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. ++|+|+|||+++.+. .
T Consensus 587 lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~ 665 (694)
T TIGR03375 587 HPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-L 665 (694)
T ss_pred CcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-h
Confidence 134689999999999999999999999999999999999999999999875 589999999999885 6
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||+|++|++|++++ .|+.+++.
T Consensus 666 ~D~iivl~~G~i~e-~G~~~eLl 687 (694)
T TIGR03375 666 VDRIIVMDNGRIVA-DGPKDQVL 687 (694)
T ss_pred CCEEEEEeCCEEEe-eCCHHHHH
Confidence 89999999999986 56655543
No 280
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=9.3e-29 Score=214.36 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=115.3
Q ss_pred cccCcccC-CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-------c-CCC---HHHHHHH
Q psy11928 2 YAHCDLQP-QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------F-NLP---YEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~p-~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~-~~~---~~~~~~~ 57 (184)
+|+|+.+| ++|+|.+++ +..+||++|++........++.+++... + ... .+++.++
T Consensus 305 ~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (490)
T PRK10938 305 LITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQW 384 (490)
T ss_pred HHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHH
Confidence 58898765 699998753 2359999997631111123333332210 0 111 2356788
Q ss_pred HhhCCCCc-ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---C-cEEEEEecCHH
Q psy11928 58 LGTFGLAG-HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---K-GGVIIVSHDER 132 (184)
Q Consensus 58 l~~~~l~~-~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~-~tiiivsHd~~ 132 (184)
++.+|+.. .. ++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|.++ + .|||+||||++
T Consensus 385 l~~~~l~~~~~-~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~ 463 (490)
T PRK10938 385 LDILGIDKRTA-DAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE 463 (490)
T ss_pred HHHcCCchhhc-cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Confidence 99999986 44 4589999999999999999999999999999999999999999999999764 3 47999999999
Q ss_pred HHHh-hcCeEEEEeCCeEEEe
Q psy11928 133 LIRD-TECTLWVIENQTIEEI 152 (184)
Q Consensus 133 ~~~~-~~~~i~~l~~g~i~~~ 152 (184)
++.. +|+++++|++|+++.+
T Consensus 464 ~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 464 DAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred hhhhhhheeEEEecCCceEEe
Confidence 9987 5899999999998653
No 281
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=3.5e-28 Score=184.84 Aligned_cols=118 Identities=31% Similarity=0.374 Sum_probs=100.5
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccccc
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK 71 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 71 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +.. .++.+++
T Consensus 47 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~i---------------------------- 95 (178)
T cd03247 47 LLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPY--LFD-TTLRNNL---------------------------- 95 (178)
T ss_pred HHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe--eec-ccHHHhh----------------------------
Confidence 58999999999998764 245999999863 222 3443332
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIENQTI 149 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~i 149 (184)
+.+|||||+||++||||++.+|+++||||||++||+.+++.+.+.+.+. +.|||++||+.+++. .|++++++++|++
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i 174 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKI 174 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEE
Confidence 6789999999999999999999999999999999999999999999765 679999999999997 6999999999998
Q ss_pred EE
Q psy11928 150 EE 151 (184)
Q Consensus 150 ~~ 151 (184)
.+
T Consensus 175 ~~ 176 (178)
T cd03247 175 IM 176 (178)
T ss_pred Ee
Confidence 64
No 282
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.96 E-value=2.7e-28 Score=219.68 Aligned_cols=154 Identities=24% Similarity=0.279 Sum_probs=122.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~ 68 (184)
.|+|+++|++|+|.+++ ++.|||+||++. +. ..|+.+++... ...+.+++.+.++..++.+...
T Consensus 519 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~ 595 (708)
T TIGR01193 519 LLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPY--IF-SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIE 595 (708)
T ss_pred HHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCce--eh-hHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHH
Confidence 58899999999999875 457999999984 32 34777777643 2345566666666665532211
Q ss_pred ----------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-CcEEEEEecCHHHHHhh
Q psy11928 69 ----------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 69 ----------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~~~~ 137 (184)
.....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.|.+. ++|+|+|||+++.+. .
T Consensus 596 ~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~ 674 (708)
T TIGR01193 596 NMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-Q 674 (708)
T ss_pred hcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-c
Confidence 1245789999999999999999999999999999999999999999999875 579999999999886 5
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||+|++|++|++++ .|+.++..
T Consensus 675 ~D~i~~l~~G~i~~-~G~~~~L~ 696 (708)
T TIGR01193 675 SDKIIVLDHGKIIE-QGSHDELL 696 (708)
T ss_pred CCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999976 66665543
No 283
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.8e-28 Score=191.95 Aligned_cols=153 Identities=22% Similarity=0.209 Sum_probs=117.4
Q ss_pred cccCccc--C---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928 2 YAHCDLQ--P---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~ 55 (184)
+|+|+.. | ++|+|.+++ +..++|+||++. +.. .++.+++.. ..+. . ...+.
T Consensus 51 ~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~ 127 (253)
T PRK14261 51 CFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVE 127 (253)
T ss_pred HHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHH
Confidence 5788765 3 489997643 235999999874 222 366655432 1111 1 12456
Q ss_pred HHHhhCCCCc----ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 56 KQLGTFGLAG----HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~~----~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
++++.+++.. .. ++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ +.|||++||
T Consensus 128 ~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh 206 (253)
T PRK14261 128 KSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTH 206 (253)
T ss_pred HHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEc
Confidence 6778887742 23 3578999999999999999999999999999999999999999999999765 479999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+++++..+||++++|++|+++. .++.+++
T Consensus 207 ~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 235 (253)
T PRK14261 207 NMQQAARVSDYTGFMYLGKLIE-FDKTTQI 235 (253)
T ss_pred CHHHHHhhCCEEEEEECCEEEE-cCCHHHH
Confidence 9999999999999999999975 4555443
No 284
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.96 E-value=1.3e-27 Score=193.96 Aligned_cols=151 Identities=20% Similarity=0.244 Sum_probs=112.2
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccc----------cccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHA----------HTIK 71 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 71 (184)
+|+|+++|++|+|.+++ .++|++|++. +.. .++.+++.........++.+.++.+++.... ...+
T Consensus 82 ~I~Gl~~p~~G~I~i~g--~i~yv~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~ 156 (282)
T cd03291 82 LILGELEPSEGKIKHSG--RISFSSQFSW--IMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156 (282)
T ss_pred HHhCCCCCCCcEEEECC--EEEEEeCccc--ccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCC
Confidence 68999999999999876 5999999874 333 3666665432111222233444444443211 1124
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-Hh--cCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-NE--YKGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~--~~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
+.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.+ .. .+.|||++|||++++. .||++++|++|+
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~ 235 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 235 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCE
Confidence 6799999999999999999999999999999999999999888754 33 2679999999999985 799999999999
Q ss_pred EEEecCChhHH
Q psy11928 149 IEEIDGDFDDY 159 (184)
Q Consensus 149 i~~~~~~~~~~ 159 (184)
+.. .++..++
T Consensus 236 i~~-~g~~~~~ 245 (282)
T cd03291 236 SYF-YGTFSEL 245 (282)
T ss_pred EEE-ECCHHHH
Confidence 875 4554444
No 285
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.96 E-value=2.7e-28 Score=214.70 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=122.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~ 68 (184)
.|+|+++|++|+|.+++ +..++|+||+|. + ...|+.+++.... ..+.+++.+.++.+|+.+...
T Consensus 377 lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~ 453 (571)
T TIGR02203 377 LIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV--L-FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVD 453 (571)
T ss_pred HHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc--c-ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHH
Confidence 57899999999999875 456999999984 3 2456777765432 345677777777777653221
Q ss_pred c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
+ ..-..||||||||++||||++.+|++++|||||++||..+.+.+++.|.+. ++|+|+|||+.+.+.
T Consensus 454 ~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~- 532 (571)
T TIGR02203 454 KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE- 532 (571)
T ss_pred hCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-
Confidence 1 123579999999999999999999999999999999999999999999876 579999999998875
Q ss_pred hcCeEEEEeCCeEEEecCChhHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.||+|+++++|++++ .|+.++.
T Consensus 533 ~~D~ii~l~~g~i~~-~g~~~~l 554 (571)
T TIGR02203 533 KADRIVVMDDGRIVE-RGTHNEL 554 (571)
T ss_pred hCCEEEEEeCCEEEe-eCCHHHH
Confidence 599999999999976 5555544
No 286
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=4.8e-28 Score=188.27 Aligned_cols=139 Identities=27% Similarity=0.277 Sum_probs=111.5
Q ss_pred cccCcccCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +....++.+++.. ..+...+++.++++.+|+.... ++
T Consensus 47 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~ 123 (207)
T PRK13539 47 LIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNA--MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HL 123 (207)
T ss_pred HHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCc--CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cC
Confidence 58899999999998764 235899998753 3334555555432 2222345678899999997654 45
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIE 145 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~ 145 (184)
++++||||||||++||||++.+|+++||||||+|||+.++.++.+.|++. +.|||++||+.+++.. ++++.++
T Consensus 124 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 124 PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeec
Confidence 89999999999999999999999999999999999999999999999764 6899999999999986 7776664
No 287
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.8e-28 Score=193.09 Aligned_cols=154 Identities=21% Similarity=0.233 Sum_probs=118.2
Q ss_pred cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928 2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR 55 (184)
Q Consensus 2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~ 55 (184)
+|+|+.. |++|+|.+++ +..++|+||++. +.. .++.+++... .+. . .+++.
T Consensus 48 ~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14266 48 TLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN--PFP-KSIFDNVAYGLRIHGEDDEDFIEERVE 124 (250)
T ss_pred HHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc--cCc-chHHHHHHhHHhhcCCCCHHHHHHHHH
Confidence 5778754 4899997643 235999999874 222 2555554321 111 1 13456
Q ss_pred HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
++++.+|+... ..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.+. +.|||++||+
T Consensus 125 ~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~ 204 (250)
T PRK14266 125 ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204 (250)
T ss_pred HHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 67888887421 223578999999999999999999999999999999999999999999999764 5799999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++..+|++++++++|++.. .++.+++
T Consensus 205 ~~~~~~~~~~i~~l~~G~i~~-~g~~~~~ 232 (250)
T PRK14266 205 MQQATRVSKYTSFFLNGEIIE-SGLTDQI 232 (250)
T ss_pred HHHHHhhcCEEEEEECCeEEE-eCCHHHH
Confidence 999999999999999999975 5555544
No 288
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.95 E-value=2.6e-28 Score=187.22 Aligned_cols=130 Identities=29% Similarity=0.392 Sum_probs=102.3
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~ 61 (184)
+|+|+.+|++|+|.+++ ++.++|+||++...+. ..++.+++.. ..+.. .+++.++++.+
T Consensus 37 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~ 115 (190)
T TIGR01166 37 HLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAV 115 (190)
T ss_pred HHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 58999999999997653 2358999998631122 2355555432 12222 13467789999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL 133 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~ 133 (184)
|+.+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+. +.|||+||||+++
T Consensus 116 ~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 116 GASGLRE-RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred Cchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9976554 589999999999999999999999999999999999999999999998764 6799999999875
No 289
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=6e-28 Score=177.86 Aligned_cols=100 Identities=43% Similarity=0.758 Sum_probs=94.2
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA 81 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 81 (184)
+|+|+.+|++|+|.+++...++|++| ||+||+|
T Consensus 45 ~l~G~~~~~~G~i~~~~~~~i~~~~~-----------------------------------------------lS~G~~~ 77 (144)
T cd03221 45 LIAGELEPDEGIVTWGSTVKIGYFEQ-----------------------------------------------LSGGEKM 77 (144)
T ss_pred HHcCCCCCCceEEEECCeEEEEEEcc-----------------------------------------------CCHHHHH
Confidence 57899999999998887778888887 9999999
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
|++||||++.+|+++|+||||++||+.++..+.+.+++.+.|+|++||+.+++..+||+++++++|+
T Consensus 78 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 78 RLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999888899999999999999999999999885
No 290
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.95 E-value=6.2e-28 Score=217.37 Aligned_cols=154 Identities=22% Similarity=0.269 Sum_probs=120.1
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.|+|+++|++|+|.+++ +++|+|++|++. + ...|+.+++... ...+++++.+.++..++.+...+
T Consensus 526 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--l-F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~ 602 (711)
T TIGR00958 526 LLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV--L-FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIME 602 (711)
T ss_pred HHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc--c-cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 57899999999998875 457999999984 3 245777777543 22345667777776665432211
Q ss_pred ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcC
Q psy11928 70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~ 139 (184)
....+||||||||++||||++.+|+|+|||||||+||+.+.+.+.+.....++|+|+|||+++.+.. ||
T Consensus 603 lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~-aD 681 (711)
T TIGR00958 603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER-AD 681 (711)
T ss_pred CCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh-CC
Confidence 1346799999999999999999999999999999999999999988333346899999999998864 89
Q ss_pred eEEEEeCCeEEEecCChhHHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~~ 160 (184)
+|++|++|++++ .|+.++..
T Consensus 682 ~IivL~~G~ive-~Gt~~eL~ 701 (711)
T TIGR00958 682 QILVLKKGSVVE-MGTHKQLM 701 (711)
T ss_pred EEEEEECCEEEE-eeCHHHHH
Confidence 999999999986 56665543
No 291
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.95 E-value=7.7e-28 Score=212.70 Aligned_cols=153 Identities=25% Similarity=0.373 Sum_probs=119.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccc--
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHA-- 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~-- 67 (184)
.|+|+++|++|+|.+++ +..|+|+||++. +. ..|+.+++... ...+++++.+.++.+++.+..
T Consensus 380 lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~ 456 (588)
T PRK13657 380 LLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG--LF-NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIER 456 (588)
T ss_pred HHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHh
Confidence 58999999999998764 457999999984 32 45677776543 233456666666665543211
Q ss_pred -----c---cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 68 -----H---TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 68 -----~---~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
+ ......||||||||++|||||+.+|+++||||||++||+.+...+.+.+.+. ++|+|+|||+.+.+. .
T Consensus 457 lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~ 535 (588)
T PRK13657 457 KPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-N 535 (588)
T ss_pred CcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-h
Confidence 1 1134579999999999999999999999999999999999999999999765 589999999999886 5
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|++.+ .|+.++.
T Consensus 536 ~D~ii~l~~G~i~~-~g~~~~l 556 (588)
T PRK13657 536 ADRILVFDNGRVVE-SGSFDEL 556 (588)
T ss_pred CCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999976 4554443
No 292
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6e-28 Score=183.58 Aligned_cols=117 Identities=30% Similarity=0.324 Sum_probs=97.1
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 68 (184)
+|+|+++|++|+|.+++ +..++|++|++. +....++.+++...
T Consensus 45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~---------------------- 100 (178)
T cd03229 45 CIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA--LFPHLTVLENIALG---------------------- 100 (178)
T ss_pred HHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc--cCCCCCHHHheeec----------------------
Confidence 58899999999997643 235899998863 33334543332110
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
||||||||++||||++.+|+++||||||+|||+.++..+.+.+.+. +.|+|+||||++++..+||++++|
T Consensus 101 ------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 174 (178)
T cd03229 101 ------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVL 174 (178)
T ss_pred ------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999988754 579999999999999999999999
Q ss_pred eCCe
Q psy11928 145 ENQT 148 (184)
Q Consensus 145 ~~g~ 148 (184)
++|+
T Consensus 175 ~~g~ 178 (178)
T cd03229 175 RDGK 178 (178)
T ss_pred eCCC
Confidence 9874
No 293
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=9.8e-28 Score=204.61 Aligned_cols=148 Identities=23% Similarity=0.246 Sum_probs=124.1
Q ss_pred CcccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc------C-CC----HHHHHHH
Q psy11928 1 MYAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF------N-LP----YEKARKQ 57 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~------~-~~----~~~~~~~ 57 (184)
++|+|.++|++|+|.+++ ...|+.++|+.+ +.+..++.+++.... + .+ .+++.++
T Consensus 52 KiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~--L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~ 129 (500)
T COG1129 52 KILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS--LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL 129 (500)
T ss_pred HHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh--ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH
Confidence 479999999999999875 246999999985 556666666654211 1 11 2457788
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI 134 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 134 (184)
|+.+|+....+ .++++||.||||.|+||||++.+++++||||||++|+....+.+.+.++++ |.+||+|||.++++
T Consensus 130 l~~lg~~~~~~-~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei 208 (500)
T COG1129 130 LARLGLDIDPD-TLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEV 208 (500)
T ss_pred HHHcCCCCChh-hhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 99999864444 589999999999999999999999999999999999999999999888764 78999999999999
Q ss_pred HhhcCeEEEEeCCeEEE
Q psy11928 135 RDTECTLWVIENQTIEE 151 (184)
Q Consensus 135 ~~~~~~i~~l~~g~i~~ 151 (184)
.++|||+.+|.||+.+.
T Consensus 209 ~~i~DritVlRDG~~v~ 225 (500)
T COG1129 209 FEIADRITVLRDGRVVG 225 (500)
T ss_pred HHhcCEEEEEeCCEEee
Confidence 99999999999999764
No 294
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.95 E-value=1.2e-27 Score=211.32 Aligned_cols=153 Identities=22% Similarity=0.321 Sum_probs=118.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhC--------
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTF-------- 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-------- 61 (184)
.|+|+++|++|+|.+++ ++.++|++|++. +. ..|+.+++... ...+.+++.+.++..
T Consensus 380 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~ 456 (585)
T TIGR01192 380 LLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAG--LF-NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILK 456 (585)
T ss_pred HHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCc--cC-cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 58899999999998764 346999999974 32 35677776543 123344444444333
Q ss_pred ---CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 62 ---GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 62 ---~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
|++.... ....+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+.+. +.|+|+|||+++.+..
T Consensus 457 l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~ 535 (585)
T TIGR01192 457 RSNGYDTLVG-ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN 535 (585)
T ss_pred ccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc
Confidence 3332222 356789999999999999999999999999999999999999999999765 6799999999999964
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||+++++++|++++ .|+.+++.
T Consensus 536 -~d~i~~l~~G~i~~-~g~~~~l~ 557 (585)
T TIGR01192 536 -ADLVLFLDQGRLIE-KGSFQELI 557 (585)
T ss_pred -CCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999976 56655543
No 295
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=6.9e-28 Score=186.34 Aligned_cols=156 Identities=21% Similarity=0.304 Sum_probs=123.4
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-c--C--CCHH-HHHHHHhhCC-
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-F--N--LPYE-KARKQLGTFG- 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~--~--~~~~-~~~~~l~~~~- 62 (184)
.|+|+.+|.+|+|.+++ +..|+||||... +++..|+.+++... + . .... ..+++.+.|-
T Consensus 48 ti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~--iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~ 125 (237)
T COG0410 48 TIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR--IFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPR 125 (237)
T ss_pred HHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc--chhhCcHHHHHhhhhhcccccccccccHHHHHHHChh
Confidence 47999999999999764 457999999763 45556666665421 1 1 0111 1556677764
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhc
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~ 138 (184)
+.+.. +++.++|||||||.++|||||+.+|++|+|||||.||-|.-.+++.+.|++. +.||++|.++..++.+++
T Consensus 126 Lker~-~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~ia 204 (237)
T COG0410 126 LKERR-NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIA 204 (237)
T ss_pred HHHHh-cCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhh
Confidence 44334 4589999999999999999999999999999999999999999999888754 459999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHHHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
||.++|++|+++. .|+.++...
T Consensus 205 Dr~yvle~Griv~-~G~~~eL~~ 226 (237)
T COG0410 205 DRGYVLENGRIVL-SGTAAELLA 226 (237)
T ss_pred CEEEEEeCCEEEE-ecCHHHHhc
Confidence 9999999999974 777666543
No 296
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.95 E-value=8.9e-28 Score=210.63 Aligned_cols=152 Identities=29% Similarity=0.359 Sum_probs=117.7
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHH---------hh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQL---------GT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l---------~~ 60 (184)
.|+|+++|++|+|.+++ ++.++|+||++. +. ..++.+++.... ..+.+++.+.+ +.
T Consensus 363 ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 439 (544)
T TIGR01842 363 LIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE--LF-PGTVAENIARFGENADPEKIIEAAKLAGVHELILR 439 (544)
T ss_pred HHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcc--cc-cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh
Confidence 57899999999998764 357999999974 33 246777765322 23344444333 33
Q ss_pred C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928 61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR 135 (184)
Q Consensus 61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~ 135 (184)
+ |++.... ....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. ++|+|++||+++.+.
T Consensus 440 l~~gl~t~~~-~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~ 518 (544)
T TIGR01842 440 LPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG 518 (544)
T ss_pred CccccccccC-CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH
Confidence 3 3443333 357889999999999999999999999999999999999999999999764 579999999999775
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.||+++++++|++++ .|+.+++
T Consensus 519 -~~d~i~~l~~G~i~~-~g~~~~l 540 (544)
T TIGR01842 519 -CVDKILVLQDGRIAR-FGERDEV 540 (544)
T ss_pred -hCCEEEEEECCEEEe-eCCHHHH
Confidence 699999999999976 5665544
No 297
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=1.7e-27 Score=183.50 Aligned_cols=125 Identities=25% Similarity=0.248 Sum_probs=102.8
Q ss_pred cccCcc--cCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccccc
Q psy11928 2 YAHCDL--QPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK 71 (184)
Q Consensus 2 ~~~G~~--~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 71 (184)
+|+|+. +|++|+|.+++ +..++|+||++. +....++.+++.... .
T Consensus 54 ~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~i~~~~------------~----------- 108 (194)
T cd03213 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDI--LHPTLTVRETLMFAA------------K----------- 108 (194)
T ss_pred HHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCccc--CCCCCcHHHHHHHHH------------H-----------
Confidence 589999 99999998753 356999999863 334456655442110 0
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH-HHHhhcCeEEEEeCC
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER-LIRDTECTLWVIENQ 147 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~-~~~~~~~~i~~l~~g 147 (184)
..+|||||+||++||||++.+|+++||||||++||+.+++.+.+.|.+. +.|+|++|||++ ++..+||+++++++|
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence 0189999999999999999999999999999999999999999998764 579999999996 788899999999999
Q ss_pred eEEE
Q psy11928 148 TIEE 151 (184)
Q Consensus 148 ~i~~ 151 (184)
++..
T Consensus 189 ~i~~ 192 (194)
T cd03213 189 RVIY 192 (194)
T ss_pred EEEe
Confidence 9864
No 298
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=1e-27 Score=211.20 Aligned_cols=154 Identities=18% Similarity=0.263 Sum_probs=120.2
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCcccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAH- 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~- 68 (184)
.|+|+++|++|+|.+++ +..++|++|++. +. ..|+.+++... ...+.+++.+.++..++.+...
T Consensus 360 ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~ 436 (569)
T PRK10789 360 LIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF--LF-SDTVANNIALGRPDATQQEIEHVARLASVHDDILR 436 (569)
T ss_pred HHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe--ec-cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 57899999999998764 356999999974 33 24677776543 2234556666666655532211
Q ss_pred ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
.....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. +.|+|+|||+++.+. .
T Consensus 437 lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~ 515 (569)
T PRK10789 437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-E 515 (569)
T ss_pred CcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-c
Confidence 1245789999999999999999999999999999999999999999999764 689999999999886 4
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||++++|++|++++ .|+.++..
T Consensus 516 ~d~i~~l~~G~i~~-~g~~~~l~ 537 (569)
T PRK10789 516 ASEILVMQHGHIAQ-RGNHDQLA 537 (569)
T ss_pred CCEEEEEeCCEEEE-ecCHHHHH
Confidence 89999999999976 56655443
No 299
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.95 E-value=6.6e-28 Score=186.16 Aligned_cols=136 Identities=29% Similarity=0.361 Sum_probs=107.6
Q ss_pred cccCcccCCceeEEecCC----------eEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNHR----------LRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~ 68 (184)
+|+|+++|++|+|.+++. ..++|++|++. +....++.+++... ......++.++++.+++.+..+
T Consensus 45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 122 (198)
T TIGR01189 45 ILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPG--LKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED 122 (198)
T ss_pred HHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcc--cccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc
Confidence 589999999999987542 46899999753 33345665554321 1222345778899999986554
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEE
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~ 142 (184)
+++.+||||||||++||||++.+|++++|||||++||+.++..+.+.+.++ +.|||++||+...+. |++++
T Consensus 123 -~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~--~~~~~ 196 (198)
T TIGR01189 123 -LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV--EAREL 196 (198)
T ss_pred -CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc--ceEEe
Confidence 589999999999999999999999999999999999999999999999764 679999999986653 55554
No 300
>KOG0062|consensus
Probab=99.95 E-value=7.9e-28 Score=202.99 Aligned_cols=166 Identities=40% Similarity=0.690 Sum_probs=142.4
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH-hcCCCHHHHHHHHhhCCCCcccccccccCCChhHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR-LFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK 80 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k 80 (184)
++.|...|..|.+....+.+|+|.+|.--.++....+..++... ..+..++++++-+..||++......++.+||||||
T Consensus 409 i~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQK 488 (582)
T KOG0062|consen 409 ILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQK 488 (582)
T ss_pred HHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcch
Confidence 46788899999999999999999999754444333344444433 34557788999999999987766667899999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
-||++|.....+|.+|+||||||+||.++...|-+.|+.+.+.||+||||.+|+...|+.+|+.++|++..+.|..++|.
T Consensus 489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yK 568 (582)
T KOG0062|consen 489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYK 568 (582)
T ss_pred hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888887
Q ss_pred HHHHHHh
Q psy11928 161 KELLEAL 167 (184)
Q Consensus 161 ~~~~~~~ 167 (184)
+....++
T Consensus 569 kl~~~e~ 575 (582)
T KOG0062|consen 569 KLLGAEL 575 (582)
T ss_pred HHHHHHH
Confidence 7655544
No 301
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=2e-27 Score=183.88 Aligned_cols=123 Identities=28% Similarity=0.378 Sum_probs=100.2
Q ss_pred cccCc--ccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccc
Q psy11928 2 YAHCD--LQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHA 67 (184)
Q Consensus 2 ~~~G~--~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 67 (184)
+|+|+ .+|++|+|.+++ +..++|+||++. +....++.+++
T Consensus 45 ~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~~~~~~l------------------------ 98 (200)
T cd03217 45 TIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP--EIPGVKNADFL------------------------ 98 (200)
T ss_pred HHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh--hccCccHHHHH------------------------
Confidence 57898 479999998653 124999999863 22223322211
Q ss_pred ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh-hcCeEEE
Q psy11928 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD-TECTLWV 143 (184)
Q Consensus 68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~-~~~~i~~ 143 (184)
.+...+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+. +.|||++||+++.+.. .||++++
T Consensus 99 -~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~ 177 (200)
T cd03217 99 -RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHV 177 (200)
T ss_pred -hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEE
Confidence 1234689999999999999999999999999999999999999999998764 6799999999999988 7999999
Q ss_pred EeCCeEEE
Q psy11928 144 IENQTIEE 151 (184)
Q Consensus 144 l~~g~i~~ 151 (184)
|++|++.+
T Consensus 178 l~~G~i~~ 185 (200)
T cd03217 178 LYDGRIVK 185 (200)
T ss_pred EECCEEEE
Confidence 99999975
No 302
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=1.3e-27 Score=179.45 Aligned_cols=76 Identities=25% Similarity=0.338 Sum_probs=72.5
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q psy11928 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIE 150 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~ 150 (184)
|||||+||++||||++.+|+++||||||++||+.+++.+.+.++++ +.|+|++|||++++...||+++++++|+++
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999764 679999999999999999999999999885
No 303
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.95 E-value=1.1e-27 Score=215.39 Aligned_cols=153 Identities=25% Similarity=0.347 Sum_probs=121.4
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCc----
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAG---- 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~---- 65 (184)
.|+|+++|++|+|.+++ +..+||++|++. +. ..|+.+++... ...+.+++.+.++..++.+
T Consensus 502 ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~--lf-~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~ 578 (694)
T TIGR01846 502 LLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV--LF-SRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISE 578 (694)
T ss_pred HHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe--eh-hhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHh
Confidence 58899999999998764 356999999974 22 35677777542 2334555555555555432
Q ss_pred -------ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 66 -------HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 66 -------~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
... ....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. +.|+|++||+++.+..
T Consensus 579 lp~gl~t~i~-~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ 657 (694)
T TIGR01846 579 LPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA 657 (694)
T ss_pred CcCccCcEec-CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh
Confidence 222 245789999999999999999999999999999999999999999999875 5799999999999875
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||++++|++|++++ .|+.++..
T Consensus 658 -~d~ii~l~~G~i~~-~g~~~~l~ 679 (694)
T TIGR01846 658 -CDRIIVLEKGQIAE-SGRHEELL 679 (694)
T ss_pred -CCEEEEEeCCEEEE-eCCHHHHH
Confidence 99999999999986 56665543
No 304
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=2.7e-27 Score=199.23 Aligned_cols=147 Identities=24% Similarity=0.320 Sum_probs=122.8
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc------CCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF------NLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~------~~~----~~~~~~~l~ 59 (184)
+|.|+++|++|+|.+++ +..||+|+|++. +.+..|+.+++.... ... .+++.++.+
T Consensus 49 iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~--Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~ 126 (501)
T COG3845 49 ILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFM--LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSE 126 (501)
T ss_pred HHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccc--cccccchhhhhhhcCccccccccCHHHHHHHHHHHHH
Confidence 68999999999999875 346999999985 333344444433211 111 356778899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
++|++-+.+ .++.+||-|+||||.|.++|..+|++|||||||+-|-|...+.|++.++++ |+|||+|||-+.++.+
T Consensus 127 ~yGl~vdp~-~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 127 RYGLPVDPD-AKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HhCCCCCcc-ceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 999987665 489999999999999999999999999999999999999999999988754 7899999999999999
Q ss_pred hcCeEEEEeCCeEEE
Q psy11928 137 TECTLWVIENQTIEE 151 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~ 151 (184)
+|||+-+|..|+++.
T Consensus 206 iaDrvTVLR~Gkvvg 220 (501)
T COG3845 206 IADRVTVLRRGKVVG 220 (501)
T ss_pred hhCeeEEEeCCeEEe
Confidence 999999999999754
No 305
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=4.5e-27 Score=183.65 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=112.4
Q ss_pred cccCcccCCceeEE-ecCCeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCHHHH-HHHHhhCCCCcccccccccCCC
Q psy11928 2 YAHCDLQPQQGELK-KNHRLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPYEKA-RKQLGTFGLAGHAHTIKMKDLS 76 (184)
Q Consensus 2 ~~~G~~~p~~G~i~-~~~~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LS 76 (184)
+|+|+.+|++|+|. ++... + .+.+.+ .+.+..++.+++. ..++....+. ..+.+.++++...+ +++++||
T Consensus 32 ~i~Gl~~~~sG~i~~~~~~~-~-~~~~~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~lS 106 (213)
T PRK15177 32 LLCGLDAPDEGDFIGLRGDA-L-PLGANS--FILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYT-DRVSEYS 106 (213)
T ss_pred HHhCCccCCCCCEEEecCce-e-cccccc--ccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhh-chHhhcC
Confidence 58999999999996 44321 1 122222 2333445555443 2223333333 23345667765554 5899999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh-c-CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecC
Q psy11928 77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE-Y-KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDG 154 (184)
Q Consensus 77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~-~-~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~ 154 (184)
+|||||++||||++.+|+++||||||+++|+.++..+.+.+.+ . +.|+|++||+++++..+||++++|++|++.. .+
T Consensus 107 ~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~ 185 (213)
T PRK15177 107 VTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM-CE 185 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE-eC
Confidence 9999999999999999999999999999999999999987753 2 5689999999999999999999999999974 56
Q ss_pred ChhHHH
Q psy11928 155 DFDDYR 160 (184)
Q Consensus 155 ~~~~~~ 160 (184)
+.+...
T Consensus 186 ~~~~~~ 191 (213)
T PRK15177 186 DLAQAT 191 (213)
T ss_pred CHHHHH
Confidence 655443
No 306
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=2.2e-27 Score=183.53 Aligned_cols=135 Identities=24% Similarity=0.241 Sum_probs=108.2
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
+|+|+.+|++|+|.+++ +..++|++|++. +.+..++.+++... .......+.++++.+++....+
T Consensus 46 ~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~- 122 (200)
T PRK13540 46 LIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSG--INPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID- 122 (200)
T ss_pred HHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccc--cCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-
Confidence 58999999999998764 246999999864 33445565554321 1112346778899999975544
Q ss_pred ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
+++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|++. +.|||++||+.+++.. ||.
T Consensus 123 ~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 123 YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADY 195 (200)
T ss_pred CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cch
Confidence 588999999999999999999999999999999999999999999999764 6799999999999976 554
No 307
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.3e-27 Score=179.32 Aligned_cols=112 Identities=31% Similarity=0.428 Sum_probs=94.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+.+|++|+|.+++ +..++|+||++. +.. .++.+++
T Consensus 47 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~--~~~-~t~~e~l--------------------------- 96 (171)
T cd03228 47 LLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPF--LFS-GTIRENI--------------------------- 96 (171)
T ss_pred HHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCch--hcc-chHHHHh---------------------------
Confidence 58999999999998754 235889998763 222 2433222
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
||+|||||++||||++.+|+++||||||++||+.++..+.+.+.+. +.|||++|||++++.. ||+++++++|+
T Consensus 97 ----LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 ----LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred ----hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999765 4699999999999987 99999998874
No 308
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.95 E-value=3e-27 Score=208.31 Aligned_cols=153 Identities=21% Similarity=0.252 Sum_probs=119.9
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH- 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~- 68 (184)
.|+|+++|++|+|.+++ ++.+||+||++. + ...|+.+++.... ..+.+++.+.++.+|+.+...
T Consensus 385 lL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~ 461 (576)
T TIGR02204 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV--L-FAASVMENIRYGRPDATDEEVEAAARAAHAHEFISA 461 (576)
T ss_pred HHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 57899999999998764 346999999984 2 3456777765422 234566666666665532111
Q ss_pred ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
......||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. ++|+|+|||+.+.+. .
T Consensus 462 l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~ 540 (576)
T TIGR02204 462 LPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-K 540 (576)
T ss_pred CCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-h
Confidence 1235679999999999999999999999999999999999999999988775 589999999998886 5
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||+++++++|++++ .|+.++.
T Consensus 541 ~d~vi~l~~g~~~~-~g~~~~l 561 (576)
T TIGR02204 541 ADRIVVMDQGRIVA-QGTHAEL 561 (576)
T ss_pred CCEEEEEECCEEEe-eecHHHH
Confidence 89999999999976 5565544
No 309
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4.3e-27 Score=180.96 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=101.6
Q ss_pred cccCcc--cCCceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccc
Q psy11928 2 YAHCDL--QPQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKM 72 (184)
Q Consensus 2 ~~~G~~--~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 72 (184)
+|+|+. +|++|+|.+++ +..++|++|++. +....++.+++.... .+
T Consensus 52 ~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~---------~~-------------- 106 (192)
T cd03232 52 VLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDV--HSPNLTVREALRFSA---------LL-------------- 106 (192)
T ss_pred HHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCc--cccCCcHHHHHHHHH---------HH--------------
Confidence 578875 48999998764 346999999863 334456665543210 00
Q ss_pred cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH-HHHhhcCeEEEEeC-C
Q psy11928 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER-LIRDTECTLWVIEN-Q 147 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~-~~~~~~~~i~~l~~-g 147 (184)
.+|||||+||++||||++.+|+++||||||++||+.++..+.+.+.+. +.|||++||+++ .+...||++++|++ |
T Consensus 107 ~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 089999999999999999999999999999999999999999998764 679999999998 47788999999998 9
Q ss_pred eEEE
Q psy11928 148 TIEE 151 (184)
Q Consensus 148 ~i~~ 151 (184)
+++.
T Consensus 187 ~i~~ 190 (192)
T cd03232 187 KTVY 190 (192)
T ss_pred eEEe
Confidence 8864
No 310
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.95 E-value=5.3e-27 Score=206.59 Aligned_cols=154 Identities=27% Similarity=0.334 Sum_probs=121.1
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCC-------
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFG------- 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~------- 62 (184)
.|.|+++|++|+|.+++ +.+||+|||++. +. ..|+.+++.... ..+++++.+.++..+
T Consensus 374 LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~--LF-~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~ 450 (567)
T COG1132 374 LLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL--LF-SGTIRENIALGRPDATDEEIEEALKLANAHEFIAN 450 (567)
T ss_pred HHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccce--ee-cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh
Confidence 47899999999999854 567999999984 33 367777775432 234555555554443
Q ss_pred ----CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 63 ----LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 63 ----l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
++.... .....||||||||++||||++.+|++++||||||+||+.+...+.+.+.+. ++|+|+|+|.+..+..
T Consensus 451 lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~ 529 (567)
T COG1132 451 LPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN 529 (567)
T ss_pred Ccccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh
Confidence 332222 235689999999999999999999999999999999999999999998643 5699999999999987
Q ss_pred hcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
||+|+++++|++++ .|+.++..+
T Consensus 530 -aD~IiVl~~G~i~e-~G~h~eLl~ 552 (567)
T COG1132 530 -ADRIIVLDNGRIVE-RGTHEELLA 552 (567)
T ss_pred -CCEEEEEECCEEEE-ecCHHHHHH
Confidence 99999999999876 666666544
No 311
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.95 E-value=4.6e-27 Score=210.02 Aligned_cols=140 Identities=22% Similarity=0.212 Sum_probs=116.6
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh--------cCCCHHHHHHHHhhCCCCccccccc--
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL--------FNLPYEKARKQLGTFGLAGHAHTIK-- 71 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~~~~~~~~-- 71 (184)
+|+|+.+|++|+|..+.+..++|+||++. +... |+.+++... .....+++.++++.+++.+.... +
T Consensus 497 lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g 572 (659)
T TIGR00954 497 ILGELWPVYGGRLTKPAKGKLFYVPQRPY--MTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGG 572 (659)
T ss_pred HHhCCCCCCCCeEeecCCCcEEEECCCCC--CCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCC
Confidence 58999999999999887788999999974 3333 676665431 11235667788999998754432 3
Q ss_pred -------ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 72 -------MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 72 -------~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+++.+.|+|+|||+++.+. .||+++++
T Consensus 573 ~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~-~~d~il~l 651 (659)
T TIGR00954 573 WSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK-YHEYLLYM 651 (659)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH-hCCEEEEE
Confidence 3799999999999999999999999999999999999999999999988899999999999874 69999998
Q ss_pred eC
Q psy11928 145 EN 146 (184)
Q Consensus 145 ~~ 146 (184)
+.
T Consensus 652 ~~ 653 (659)
T TIGR00954 652 DG 653 (659)
T ss_pred eC
Confidence 63
No 312
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.1e-26 Score=180.01 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=103.5
Q ss_pred cccCccc---CCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQ---PQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~---p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 68 (184)
+|+|+++ |++|+|.+++ +..++|++|++. +....|+.+++..... . . .
T Consensus 52 ~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~-----~-------~----~- 112 (202)
T cd03233 52 ALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDV--HFPTLTVRETLDFALR-----C-------K----G- 112 (202)
T ss_pred HhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccc--cCCCCcHHHHHhhhhh-----h-------c----c-
Confidence 5889998 8999997643 346999999863 3445566666532110 0 0 2
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEE-ecCHHHHHhhcCeEEE
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIV-SHDERLIRDTECTLWV 143 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiiv-sHd~~~~~~~~~~i~~ 143 (184)
++++.+||+||+||++||||++.+|+++||||||++||+.+++.+.+.+++. +.|+|++ +|+.+.+...||++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 2478999999999999999999999999999999999999999999998764 3565555 5667899889999999
Q ss_pred EeCCeEEE
Q psy11928 144 IENQTIEE 151 (184)
Q Consensus 144 l~~g~i~~ 151 (184)
|++|+++.
T Consensus 193 l~~G~i~~ 200 (202)
T cd03233 193 LYEGRQIY 200 (202)
T ss_pred EECCEEEe
Confidence 99999864
No 313
>KOG0055|consensus
Probab=99.95 E-value=2.1e-27 Score=217.24 Aligned_cols=153 Identities=27% Similarity=0.335 Sum_probs=118.1
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCC-------
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFG------- 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~------- 62 (184)
.|.+++.|++|+|.+++ +.+||.|+|+|. + ...|+.+++.... +.+.+++.+..+..+
T Consensus 398 LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePv--l-F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~ 474 (1228)
T KOG0055|consen 398 LLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV--L-FATTIRENIRYGKPDATREEIEEAAKAANAHDFILK 474 (1228)
T ss_pred HHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechh--h-hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh
Confidence 36789999999999875 567999999983 2 3456777765422 223444444333322
Q ss_pred ----CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 63 ----LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 63 ----l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
++..... +--+||||||||++|||||+.+|+|||||||||+||+++.+.+.+.|.+. |.|.|+|+|++..+..
T Consensus 475 lp~g~~T~vge-~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn 553 (1228)
T KOG0055|consen 475 LPDGYDTLVGE-RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN 553 (1228)
T ss_pred hHHhhcccccC-CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc
Confidence 2222222 34569999999999999999999999999999999999999999999765 7899999999999987
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
+|+|+++++|+|++ .|+.+++.
T Consensus 554 -aD~I~v~~~G~IvE-~G~h~ELi 575 (1228)
T KOG0055|consen 554 -ADKIAVMEEGKIVE-QGTHDELI 575 (1228)
T ss_pred -cCEEEEEECCEEEE-ecCHHHHH
Confidence 89999999999987 56655543
No 314
>PLN03211 ABC transporter G-25; Provisional
Probab=99.95 E-value=8.6e-27 Score=207.90 Aligned_cols=155 Identities=23% Similarity=0.244 Sum_probs=120.5
Q ss_pred cccCcccCC--ceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHH---h--c-CCCH----HHHHHHHhhCC
Q psy11928 2 YAHCDLQPQ--QGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQR---L--F-NLPY----EKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~--~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~--~-~~~~----~~~~~~l~~~~ 62 (184)
+|+|..+|+ +|+|.+++ ++++||++|++. +.+..|+.+++.. . . .... +++.++++.+|
T Consensus 113 iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg 190 (659)
T PLN03211 113 ALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDI--LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG 190 (659)
T ss_pred HHhCCCCCCceeEEEEECCEECchhhccceEEECcccc--cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 689999885 89998765 246999999864 3334455544321 1 1 1122 34677899999
Q ss_pred CCcccc----cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH-HH
Q psy11928 63 LAGHAH----TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER-LI 134 (184)
Q Consensus 63 l~~~~~----~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~-~~ 134 (184)
+.+..+ ++.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++. +.|||++||+++ .+
T Consensus 191 L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i 270 (659)
T PLN03211 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV 270 (659)
T ss_pred ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence 975432 2357889999999999999999999999999999999999999999998753 689999999998 58
Q ss_pred HhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 135 RDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 135 ~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+.+|++++|++|+++. .|+.++.
T Consensus 271 ~~~~D~iilL~~G~iv~-~G~~~~~ 294 (659)
T PLN03211 271 YQMFDSVLVLSEGRCLF-FGKGSDA 294 (659)
T ss_pred HHhhceEEEecCCcEEE-ECCHHHH
Confidence 88999999999999864 5555443
No 315
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=6.9e-27 Score=187.21 Aligned_cols=142 Identities=21% Similarity=0.235 Sum_probs=109.0
Q ss_pred cccCcccCCceeEE-----------ecC-------------CeEEEEEecCCCCC-CCccCCHHHHHHHhcCCCHHHHHH
Q psy11928 2 YAHCDLQPQQGELK-----------KNH-------------RLRIGRFDQHSGEH-LTAEETPAEYLQRLFNLPYEKARK 56 (184)
Q Consensus 2 ~~~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~ 56 (184)
+|+|+++|++|+|. +++ ...++|++|.+... .+...++.+++.. ......+.+
T Consensus 45 ~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~ 122 (255)
T cd03236 45 ILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK--KDERGKLDE 122 (255)
T ss_pred HHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhch--hHHHHHHHH
Confidence 68999999999995 221 11368888875310 1112222222111 111345778
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL 133 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~ 133 (184)
+++.+|++...+ +++.+||||||||++|||+++.+|+++||||||++||+.++..+.+.+.+. +.|||++|||+++
T Consensus 123 ~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~ 201 (255)
T cd03236 123 LVDQLELRHVLD-RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV 201 (255)
T ss_pred HHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 999999986554 589999999999999999999999999999999999999999988888754 6799999999999
Q ss_pred HHhhcCeEEEEeC
Q psy11928 134 IRDTECTLWVIEN 146 (184)
Q Consensus 134 ~~~~~~~i~~l~~ 146 (184)
+..+||+++++++
T Consensus 202 ~~~~ad~i~~l~~ 214 (255)
T cd03236 202 LDYLSDYIHCLYG 214 (255)
T ss_pred HHHhCCEEEEECC
Confidence 9999999999964
No 316
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=7.5e-27 Score=223.35 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=123.2
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT- 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 69 (184)
.|.|+++|++|+|.+++ |++++++||+|. +. ..|+.+++......+.+++.+.++..++.+....
T Consensus 1281 lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~--LF-~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1281 ALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPV--LF-SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCe--ee-CccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 47899999999998764 567999999984 32 3467777643223456677777776666432211
Q ss_pred ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928 70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~ 138 (184)
....+||||||||++|||||+.+|+|||||||||+||+++.+.+.+.|++. +.|+|+|+|+++.+.. |
T Consensus 1358 p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~ 1436 (1495)
T PLN03232 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-C 1436 (1495)
T ss_pred cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-C
Confidence 134689999999999999999999999999999999999999999999865 5799999999999986 8
Q ss_pred CeEEEEeCCeEEEecCChhHHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
|+|++|++|++++ .|++++..
T Consensus 1437 DrIlVL~~G~ivE-~Gt~~eLl 1457 (1495)
T PLN03232 1437 DKILVLSSGQVLE-YDSPQELL 1457 (1495)
T ss_pred CEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999987 46665544
No 317
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.94 E-value=1.4e-26 Score=203.15 Aligned_cols=147 Identities=20% Similarity=0.166 Sum_probs=113.7
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT- 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 69 (184)
.|+|+++|++|+|.+++ +..++|++|++. +. ..++.++ ....+.+.+.+.++.+++......
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~~ 441 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH--LF-DQLLGPE---GKPANPALVEKWLERLKMAHKLELE 441 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChh--HH-HHhhccc---cCchHHHHHHHHHHHcCCchhhhcc
Confidence 58999999999998763 357999999874 21 1122221 012234567778888888654321
Q ss_pred -c--cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEE
Q psy11928 70 -I--KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 70 -~--~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~ 142 (184)
. ...+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+ .+.|+|+|||+++.+. .||+++
T Consensus 442 ~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~ 520 (547)
T PRK10522 442 DGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLL 520 (547)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEE
Confidence 0 1358999999999999999999999999999999999999998887752 3689999999998765 699999
Q ss_pred EEeCCeEEEecCC
Q psy11928 143 VIENQTIEEIDGD 155 (184)
Q Consensus 143 ~l~~g~i~~~~~~ 155 (184)
++++|++.+..+.
T Consensus 521 ~l~~G~i~e~~~~ 533 (547)
T PRK10522 521 EMRNGQLSELTGE 533 (547)
T ss_pred EEECCEEEEecCC
Confidence 9999999876554
No 318
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1e-26 Score=179.16 Aligned_cols=135 Identities=27% Similarity=0.219 Sum_probs=107.1
Q ss_pred cccCcccCCceeEEecCC-------eEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccccccc
Q psy11928 2 YAHCDLQPQQGELKKNHR-------LRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAHTIKM 72 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~-------~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~ 72 (184)
+|+|+.+|++|+|.+++. ..++|++|++. +....++.+++.... ....+++.++++.+++.+..+ +++
T Consensus 45 ~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~ 121 (195)
T PRK13541 45 MIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG--LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-EKC 121 (195)
T ss_pred HHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC--CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-cCh
Confidence 589999999999987652 34899998763 334456655543211 112345677889999976554 589
Q ss_pred cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHHHHHhhcCe
Q psy11928 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~~~ 140 (184)
.+||||||||++||||++.+|+++||||||++||+.++..+.+.+.+ .+.|+|++||+.+++.. +|.
T Consensus 122 ~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~ 191 (195)
T PRK13541 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQI 191 (195)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhe
Confidence 99999999999999999999999999999999999999999998863 36899999999998876 443
No 319
>KOG0927|consensus
Probab=99.94 E-value=3.6e-27 Score=200.00 Aligned_cols=165 Identities=42% Similarity=0.735 Sum_probs=142.6
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcC--CCHHHHHHHHhhCCCCcccccccccCCChhH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN--LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQ 79 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 79 (184)
.++|.+.|..|.|.......+++..|+....+.-..+..+++...+. ...+.++.++.+|||+.+....++++||+||
T Consensus 435 l~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gq 514 (614)
T KOG0927|consen 435 LITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQ 514 (614)
T ss_pred HHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhccccc
Confidence 57899999999998776667888888765444445566677655443 3456788999999999777778999999999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|.||.+|++.+.+|.+|+|||||||||+.+...+.+.|+++.++||+||||..++.++++++|+.++|.+..+.|++..|
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999899999888
Q ss_pred HHHHHHH
Q psy11928 160 RKELLEA 166 (184)
Q Consensus 160 ~~~~~~~ 166 (184)
.+...+.
T Consensus 595 k~~l~~~ 601 (614)
T KOG0927|consen 595 KEHLKKK 601 (614)
T ss_pred HHHHHHH
Confidence 7765433
No 320
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=1.1e-26 Score=223.06 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=122.7
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT- 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 69 (184)
.|.|+++|++|+|.+++ |++||++||+|. +. .-|+.+++......+++++.+.++..++.+....
T Consensus 1284 lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~--LF-~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~l 1360 (1622)
T PLN03130 1284 ALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPV--LF-SGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRN 1360 (1622)
T ss_pred HHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCc--cc-cccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 47899999999999875 567999999984 32 2367777643223456667777776665432211
Q ss_pred ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928 70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~ 138 (184)
....+||||||||++|||||+.+|+|||||||||+||..+.+.+.+.|++. ++|+|+|+|+++.+.. |
T Consensus 1361 p~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~ 1439 (1622)
T PLN03130 1361 SLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-C 1439 (1622)
T ss_pred ccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-C
Confidence 134689999999999999999999999999999999999999999999865 5799999999999986 8
Q ss_pred CeEEEEeCCeEEEecCChhHHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
|+|++|++|++++ .|++++..
T Consensus 1440 DrIlVLd~G~IvE-~Gt~~eLl 1460 (1622)
T PLN03130 1440 DRILVLDAGRVVE-FDTPENLL 1460 (1622)
T ss_pred CEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999987 45555543
No 321
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.94 E-value=2.9e-26 Score=204.63 Aligned_cols=147 Identities=27% Similarity=0.355 Sum_probs=119.6
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ ++.++|+||++. +....++.+++.. ..+.. .+++.++++
T Consensus 53 ~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 130 (648)
T PRK10535 53 ILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH--LLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQ 130 (648)
T ss_pred HHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 58999999999998753 236999999874 3344455554432 11222 235677899
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+|+.+..+ +++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.++++++ +.|+|++||+.+.+.
T Consensus 131 ~lgl~~~~~-~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~- 208 (648)
T PRK10535 131 RLGLEDRVE-YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA- 208 (648)
T ss_pred HCCChhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-
Confidence 999986554 589999999999999999999999999999999999999999999998754 579999999999886
Q ss_pred hcCeEEEEeCCeEEEe
Q psy11928 137 TECTLWVIENQTIEEI 152 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~ 152 (184)
.||++++|++|++.+.
T Consensus 209 ~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 209 QAERVIEIRDGEIVRN 224 (648)
T ss_pred hCCEEEEEECCEEEee
Confidence 5999999999999753
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=3.7e-26 Score=173.63 Aligned_cols=103 Identities=27% Similarity=0.284 Sum_probs=91.8
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA 81 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 81 (184)
+|+|+++|++|+|.+++ ..++|++|++. |||||||
T Consensus 44 ~l~Gl~~p~~G~i~~~g-~~i~~~~q~~~--------------------------------------------LSgGq~q 78 (177)
T cd03222 44 ILAGQLIPNGDNDEWDG-ITPVYKPQYID--------------------------------------------LSGGELQ 78 (177)
T ss_pred HHHcCCCCCCcEEEECC-EEEEEEcccCC--------------------------------------------CCHHHHH
Confidence 58899999999998865 35888887541 9999999
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTI 149 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i 149 (184)
|++||||++.+|+++||||||++||+.++..+.+.+.+. +.|||+||||++++..+|+++++++++..
T Consensus 79 rv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 79 RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 999999999999999999999999999999999988654 37999999999999999999999987754
No 323
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=2.8e-27 Score=175.15 Aligned_cols=149 Identities=22% Similarity=0.261 Sum_probs=121.4
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCC-CCCCccCCHHH-HHHHhcCCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSG-EHLTAEETPAE-YLQRLFNLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~ 68 (184)
.+|.++.|++|++.+.+ |..|+|+-|.|. -.-+++.|+.. +.......++..+..+++++++.+...
T Consensus 48 ~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L 127 (223)
T COG4619 48 IVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL 127 (223)
T ss_pred HHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhh
Confidence 46789999999998754 567999999985 11133344221 111223445677889999999987666
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
.+++.+||||||||++|+|.|..-|+|||||||||+||+.+++.+.++|.++ ..+++.||||.+...+.++++|-+
T Consensus 128 ~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl 207 (223)
T COG4619 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITL 207 (223)
T ss_pred cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEe
Confidence 7799999999999999999999999999999999999999999999988654 579999999999988999999999
Q ss_pred eCCeEE
Q psy11928 145 ENQTIE 150 (184)
Q Consensus 145 ~~g~i~ 150 (184)
..|++-
T Consensus 208 ~~G~~~ 213 (223)
T COG4619 208 QPGHAG 213 (223)
T ss_pred ccCccc
Confidence 998763
No 324
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8e-27 Score=198.03 Aligned_cols=154 Identities=26% Similarity=0.305 Sum_probs=124.1
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.++|..+|++|+|..++ +..+++++|.+. + ...|+.+++... .+.+.+++.++++.+|+++....
T Consensus 383 Ll~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~h--l-F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 383 LLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVH--L-FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchH--H-HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 36788999999998764 346899999864 3 234566665532 34457788888989888754332
Q ss_pred c----------cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 70 I----------KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 70 ~----------~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
. --..|||||+||++|||+|+++.+++||||||.|||+.+..++++.+.+. ++|+|+|||++..++.
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~- 538 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER- 538 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-
Confidence 1 24689999999999999999999999999999999999999999999765 7899999999999985
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||+|++|++|++++ .|++.+..
T Consensus 539 ~drIivl~~Gkiie-~G~~~~Ll 560 (573)
T COG4987 539 MDRIIVLDNGKIIE-EGTHAELL 560 (573)
T ss_pred cCEEEEEECCeeee-cCCHHhhh
Confidence 89999999999986 66665543
No 325
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=2.1e-26 Score=203.19 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=113.5
Q ss_pred cccCcccCCceeEE-----------ecC-------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHH
Q psy11928 2 YAHCDLQPQQGELK-----------KNH-------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~ 55 (184)
+|+|+++|++|+|. +++ ...+++.+|... +.+ ...++.+++... ...+++.
T Consensus 118 iL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~-~~~tv~e~l~~~--~~~~~~~ 194 (590)
T PRK13409 118 ILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKV-FKGKVRELLKKV--DERGKLD 194 (590)
T ss_pred HHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhh-hcchHHHHHHhh--hHHHHHH
Confidence 68999999999996 322 134667677542 111 122555554321 1235678
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL 133 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~ 133 (184)
++++.+++....+ +++.+|||||||||+||+||+.+|+++||||||++||+.++.++.+.|+++ +.|||+||||+++
T Consensus 195 ~~l~~l~l~~~~~-~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~ 273 (590)
T PRK13409 195 EVVERLGLENILD-RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAV 273 (590)
T ss_pred HHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 8999999986554 589999999999999999999999999999999999999999999999876 8899999999999
Q ss_pred HHhhcCeEEEEeCC
Q psy11928 134 IRDTECTLWVIENQ 147 (184)
Q Consensus 134 ~~~~~~~i~~l~~g 147 (184)
+..+||+++++.++
T Consensus 274 l~~~~D~v~vl~~~ 287 (590)
T PRK13409 274 LDYLADNVHIAYGE 287 (590)
T ss_pred HHHhCCEEEEEeCC
Confidence 99999999999763
No 326
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.2e-26 Score=168.58 Aligned_cols=151 Identities=24% Similarity=0.301 Sum_probs=120.7
Q ss_pred cccCcccCCceeEEecC--------------------CeEEEEEecCCCCCC----CccCCHHHHHHH----hcCCCHHH
Q psy11928 2 YAHCDLQPQQGELKKNH--------------------RLRIGRFDQHSGEHL----TAEETPAEYLQR----LFNLPYEK 53 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------------~~~ig~v~q~~~~~l----~~~~~~~~~~~~----~~~~~~~~ 53 (184)
.|+|-+.|++|+|.+.. +...|||.|+|.+.+ +..-|+-+.+.. .|+.-+..
T Consensus 51 ~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~ 130 (258)
T COG4107 51 CISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE 130 (258)
T ss_pred HHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHH
Confidence 46788999999997531 345999999996332 334455444332 22222455
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEec
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSH 129 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsH 129 (184)
+.+.++.+.++...-+..|..+|||||||++|||.|+..|+++++||||.|||......+.++++ +++.++++|||
T Consensus 131 a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTH 210 (258)
T COG4107 131 AQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred HHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEec
Confidence 77889999886543334799999999999999999999999999999999999999999888875 56889999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEEe
Q psy11928 130 DERLIRDTECTLWVIENQTIEEI 152 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~~ 152 (184)
|+..+.-+++|..+|++|.+++.
T Consensus 211 Dl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 211 DLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hhHHHHHhhhcceeecCCCEecc
Confidence 99999999999999999998763
No 327
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.94 E-value=3.2e-26 Score=200.13 Aligned_cols=139 Identities=28% Similarity=0.334 Sum_probs=111.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.|+|+++|++|+|.+++ ++.+||++|++. +. ..|+.+++... ...+++++.+.++..++.+...+
T Consensus 367 ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~ 443 (529)
T TIGR02857 367 LLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF--LF-AGTIAENIRLARPDASDAEIRRALERAGLDEFVAA 443 (529)
T ss_pred HHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCc--cc-CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 58899999999998764 346999999984 32 35777777543 23355667777777776532211
Q ss_pred ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. ++|+|+|||+++.+. .
T Consensus 444 lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~ 522 (529)
T TIGR02857 444 LPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-R 522 (529)
T ss_pred CcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-h
Confidence 135689999999999999999999999999999999999999999999875 579999999999986 5
Q ss_pred cCeEEEE
Q psy11928 138 ECTLWVI 144 (184)
Q Consensus 138 ~~~i~~l 144 (184)
||+|++|
T Consensus 523 ~d~i~~l 529 (529)
T TIGR02857 523 ADRIVVL 529 (529)
T ss_pred CCEEEeC
Confidence 8998764
No 328
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.4e-26 Score=174.35 Aligned_cols=163 Identities=26% Similarity=0.297 Sum_probs=126.3
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC--CC--HHH--HHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN--LP--YEK--ARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~--~~--~~~--~~~~l~~~ 61 (184)
.|+|...|++|++.+++ .+.-+.+||+.. +....++.+.+... ++ -. +.. +.+.|...
T Consensus 46 ~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~--laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~ 123 (259)
T COG4559 46 ALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSS--LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAAT 123 (259)
T ss_pred HhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcc--cccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHc
Confidence 58999999999998764 245788999864 44445566655421 11 11 222 56788888
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLN------APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER 132 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~ 132 (184)
++..+.. +...+|||||||||.+||.|++ ++++|+||||||+||+.....++++.+++ +..|+.|-||++
T Consensus 124 d~~~la~-R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN 202 (259)
T COG4559 124 DLSGLAG-RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN 202 (259)
T ss_pred Chhhhhc-cchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch
Confidence 8887665 5789999999999999999954 34589999999999999999999888765 679999999999
Q ss_pred HHHhhcCeEEEEeCCeEEEecCCh-hHHHHHHHHHhh
Q psy11928 133 LIRDTECTLWVIENQTIEEIDGDF-DDYRKELLEALG 168 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~~~~~~-~~~~~~~~~~~~ 168 (184)
.+..+||||++|++|+++. .|++ +.+..+-++..+
T Consensus 203 LAA~YaDrivll~~Grv~a-~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 203 LAAQYADRIVLLHQGRVIA-SGSPQDVLTDETLERVY 238 (259)
T ss_pred HHHHhhheeeeeeCCeEee-cCCHHHhcCHHHHHHHh
Confidence 9999999999999999986 6655 445666555543
No 329
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=182.28 Aligned_cols=158 Identities=25% Similarity=0.373 Sum_probs=120.8
Q ss_pred cccCcccCCceeEEecCC----------eEEEEEecCCC-C--CCCccCCHHHHHHHhcCCCH----HHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNHR----------LRIGRFDQHSG-E--HLTAEETPAEYLQRLFNLPY----EKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~----------~~ig~v~q~~~-~--~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~l~ 64 (184)
.|+|++.|++|.|.+++. +++++++-+.. . .+...++ .+.....+..+. ++...+.+.++++
T Consensus 69 mLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds-~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~ 147 (325)
T COG4586 69 MLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS-LEVLKLIYEIPDDEFAERLDFLTEILDLE 147 (325)
T ss_pred HHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh-HHHHHHHHhCCHHHHHHHHHHHHHHhcch
Confidence 589999999999998641 23544433221 0 0111112 122223344443 4455677888998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~ 140 (184)
+..+. ++..||-|||.|+.||.+|+++|+||+|||||-|||..++..+.+.++++ +.||+++||+++.+...|+|
T Consensus 148 ~~lk~-~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 148 GFLKW-PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred hhhhh-hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh
Confidence 87765 89999999999999999999999999999999999999999999999865 57999999999999999999
Q ss_pred EEEEeCCeEEEecCChhHHHHH
Q psy11928 141 LWVIENQTIEEIDGDFDDYRKE 162 (184)
Q Consensus 141 i~~l~~g~i~~~~~~~~~~~~~ 162 (184)
|+.|+.|+++ ++|+..++.++
T Consensus 227 v~~I~~Gqlv-~dg~l~~l~~~ 247 (325)
T COG4586 227 VLLIDQGQLV-FDGTLAQLQEQ 247 (325)
T ss_pred eEEeeCCcEe-ecccHHHHHHH
Confidence 9999999997 57776665443
No 330
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.7e-27 Score=179.26 Aligned_cols=162 Identities=20% Similarity=0.315 Sum_probs=128.1
Q ss_pred ccCcccCCceeEEecCC-----------eEEEEEecCCCCCCCccCCHHHHHHH--h-c---CCC---HHHHHHHHhhCC
Q psy11928 3 AHCDLQPQQGELKKNHR-----------LRIGRFDQHSGEHLTAEETPAEYLQR--L-F---NLP---YEKARKQLGTFG 62 (184)
Q Consensus 3 ~~G~~~p~~G~i~~~~~-----------~~ig~v~q~~~~~l~~~~~~~~~~~~--~-~---~~~---~~~~~~~l~~~~ 62 (184)
++.++++++|+|.+++. ++++.+-|++. +....|+.+.+.. + + .+. +..+++.++.++
T Consensus 47 ~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~--i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~ 124 (252)
T COG4604 47 MSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENH--INSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH 124 (252)
T ss_pred HHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhch--hhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhc
Confidence 56788999999987652 34677777653 4445566554432 1 1 121 345788899999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhc
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~ 138 (184)
|++..+ ++..+||||||||+.+|..++++.++++||||.|+||....-.+++.++ ++++||++|-||.+|+..++
T Consensus 125 L~~l~d-ryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Ys 203 (252)
T COG4604 125 LEDLSD-RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYS 203 (252)
T ss_pred ccchHH-HhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhh
Confidence 987654 6899999999999999999999999999999999999999888888875 46899999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHH-HHHHHHHhh
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY-RKELLEALG 168 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~-~~~~~~~~~ 168 (184)
|.|+.+++|+++. .|++++. ..+.++++.
T Consensus 204 D~IVAlK~G~vv~-~G~~~eii~~~~L~eiy 233 (252)
T COG4604 204 DHIVALKNGKVVK-QGSPDEIIQPEILSEIY 233 (252)
T ss_pred hheeeecCCEEEe-cCCHHHhcCHHHHHHHh
Confidence 9999999999975 6777664 445555554
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.94 E-value=3e-26 Score=201.46 Aligned_cols=144 Identities=18% Similarity=0.163 Sum_probs=111.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
.|+|+++|++|+|.+++ +..+++++|++. +. ..++.++. ......+++.+.++.+++.+.....
T Consensus 387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~l 461 (555)
T TIGR01194 387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH--LF-DDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIE 461 (555)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChh--hh-hhhhhccc--ccchhHHHHHHHHHHcCCchhhccc
Confidence 57899999999998764 346999999874 21 12222221 1122345677888898887543211
Q ss_pred -----cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-H---hcCcEEEEEecCHHHHHhhcCeE
Q psy11928 71 -----KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-N---EYKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 71 -----~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~---~~~~tiiivsHd~~~~~~~~~~i 141 (184)
...+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+ . ..++|+|+|||+++.+. .||+|
T Consensus 462 p~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i 540 (555)
T TIGR01194 462 DGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQI 540 (555)
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEE
Confidence 23679999999999999999999999999999999999999987654 2 34789999999998775 79999
Q ss_pred EEEeCCeEEE
Q psy11928 142 WVIENQTIEE 151 (184)
Q Consensus 142 ~~l~~g~i~~ 151 (184)
+++++|++++
T Consensus 541 ~~l~~G~i~~ 550 (555)
T TIGR01194 541 IKLAAGCIVK 550 (555)
T ss_pred EEEECCEEEE
Confidence 9999999875
No 332
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=4.3e-26 Score=217.24 Aligned_cols=147 Identities=22% Similarity=0.281 Sum_probs=115.7
Q ss_pred CceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc--------
Q psy11928 10 QQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT-------- 69 (184)
Q Consensus 10 ~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~-------- 69 (184)
++|+|.+++ +..||||+|+|. + ...|+.+++... ...+.+++.+.++..++.++...
T Consensus 1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--L-F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~ 1351 (1466)
T PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--L-FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTN 1351 (1466)
T ss_pred CCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCc
Confidence 699998764 567999999984 3 246777877653 23456667777766665432211
Q ss_pred --ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEE
Q psy11928 70 --IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 70 --~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
....+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|.+. +.|+|+|||+++.+.. ||+|++
T Consensus 1352 VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivv 1430 (1466)
T PTZ00265 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVV 1430 (1466)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEE
Confidence 134679999999999999999999999999999999999999999999765 6799999999999875 899999
Q ss_pred EeC----CeEEEecCChhHHH
Q psy11928 144 IEN----QTIEEIDGDFDDYR 160 (184)
Q Consensus 144 l~~----g~i~~~~~~~~~~~ 160 (184)
|++ |+++...|+.+++.
T Consensus 1431 l~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1431 FNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred EeCCCCCCCEEEEecCHHHHH
Confidence 999 88553367766654
No 333
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=8.3e-26 Score=202.94 Aligned_cols=110 Identities=26% Similarity=0.483 Sum_probs=99.2
Q ss_pred HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCH
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~ 131 (184)
.++.+++..+|+.....++++.+|||||||||+||++|+.+|++||||||||+||+.++.++.++|++++.|||+||||+
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~ 401 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAR 401 (718)
T ss_pred HHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 45667888899964434468999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
+++..+|+++++|++|++..+.|+++.+..
T Consensus 402 ~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 402 EFLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999999999999878888876554
No 334
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.94 E-value=6.8e-26 Score=217.10 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=123.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccc---
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHA--- 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 67 (184)
.|.|+++|++|+|.+++ |.+|+++||+|. +. ..|+.+++.-....+++++.+.++..++.+..
T Consensus 1331 lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~--LF-~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~l 1407 (1522)
T TIGR00957 1331 GLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPV--LF-SGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSAL 1407 (1522)
T ss_pred HHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCc--cc-CccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhC
Confidence 47899999999999875 567999999984 32 24677776422234566777777776654321
Q ss_pred ----cc---ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928 68 ----HT---IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 68 ----~~---~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~ 138 (184)
+. ....+||||||||++|||||+.+|+||||||||++||.++...+.+.|++. +.|+|+|+|+++.+.. |
T Consensus 1408 p~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~ 1486 (1522)
T TIGR00957 1408 PDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-Y 1486 (1522)
T ss_pred ccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-C
Confidence 11 134679999999999999999999999999999999999999999999764 5799999999999986 7
Q ss_pred CeEEEEeCCeEEEecCChhHHHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
|+|++|++|++++ .|++++..+
T Consensus 1487 DrIlVld~G~IvE-~G~~~eLl~ 1508 (1522)
T TIGR00957 1487 TRVIVLDKGEVAE-FGAPSNLLQ 1508 (1522)
T ss_pred CEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999987 566655543
No 335
>KOG0057|consensus
Probab=99.94 E-value=8.4e-26 Score=192.08 Aligned_cols=152 Identities=26% Similarity=0.286 Sum_probs=120.6
Q ss_pred cCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc--
Q psy11928 4 HCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT-- 69 (184)
Q Consensus 4 ~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~-- 69 (184)
.+..+ ++|+|.+++ |+.||||||+.. + ..+|+..++... ...+.+++.+..+++|+.+-..+
T Consensus 399 lrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~--L-FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~ 474 (591)
T KOG0057|consen 399 LRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV--L-FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLP 474 (591)
T ss_pred HHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc--c-cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhcc
Confidence 34555 899998875 567999999863 2 456776666432 23456778888888888653221
Q ss_pred --------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcC
Q psy11928 70 --------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 70 --------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~ 139 (184)
.+...|||||||||+||||++.+|+|+++|||||+||.++...+.+.+... ++|+|+|-|+++.+.. ||
T Consensus 475 ~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~D 553 (591)
T KOG0057|consen 475 DGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FD 553 (591)
T ss_pred ccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CC
Confidence 134679999999999999999999999999999999999999999999763 6899999999999986 89
Q ss_pred eEEEEeCCeEEEecCChhHHHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
+|+++++|++.+ .|+.+++..
T Consensus 554 kI~~l~nG~v~e-~gth~ell~ 574 (591)
T KOG0057|consen 554 KIIVLDNGTVKE-YGTHSELLA 574 (591)
T ss_pred EEEEEECCeeEE-eccHHHHhh
Confidence 999999999987 455555443
No 336
>PTZ00243 ABC transporter; Provisional
Probab=99.93 E-value=1e-25 Score=215.87 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=124.3
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT- 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 69 (184)
.|.|+++|++|+|.+++ ++.||++||+|. +. ..|+.+++......+.+++.+.++..++.+....
T Consensus 1355 lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~--LF-~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~l 1431 (1560)
T PTZ00243 1355 TFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPV--LF-DGTVRQNVDPFLEASSAEVWAALELVGLRERVASE 1431 (1560)
T ss_pred HHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCc--cc-cccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhC
Confidence 47899999999998764 567999999984 33 3477777643223456778888888877543211
Q ss_pred ---------ccccCCChhHHHHHHHHHHHhcC-CCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 70 ---------IKMKDLSGGQKARVALAELTLNA-PDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 70 ---------~~~~~LSgG~kqrv~laral~~~-p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
....+||||||||++|||||+.+ |+|||||||||+||+.+.+.+.+.|.+. +.|+|+|+|+++.+..
T Consensus 1432 p~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~- 1510 (1560)
T PTZ00243 1432 SEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ- 1510 (1560)
T ss_pred cccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-
Confidence 12367999999999999999995 8999999999999999999999999764 5799999999999975
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||+|++|++|++++ .|+++++.
T Consensus 1511 ~DrIlVLd~G~VvE-~Gt~~eLl 1532 (1560)
T PTZ00243 1511 YDKIIVMDHGAVAE-MGSPRELV 1532 (1560)
T ss_pred CCEEEEEECCEEEE-ECCHHHHH
Confidence 89999999999987 56666654
No 337
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.1e-25 Score=169.11 Aligned_cols=153 Identities=23% Similarity=0.240 Sum_probs=126.5
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHH----HhcCCC----HHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQ----RLFNLP----YEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~----~~~~~~----~~~~~~~l~~~~ 62 (184)
.|+|.++|++|+|.+++ .+.|-++||+|+..+.++.++...+. ....++ .+++.+-|..+|
T Consensus 58 MlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VG 137 (267)
T COG4167 58 MLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVG 137 (267)
T ss_pred HHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhc
Confidence 47999999999998764 34699999999866777776544332 222222 245667789999
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhc
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~ 138 (184)
+-++..+.++..||.||||||++||||+.+|+|+|.||..++||...+.++.++.- +.|.+-|+|+.++..++.++
T Consensus 138 L~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~ 217 (267)
T COG4167 138 LLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHIS 217 (267)
T ss_pred cCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhc
Confidence 86554556899999999999999999999999999999999999999999988764 45889999999999999999
Q ss_pred CeEEEEeCCeEEEecC
Q psy11928 139 CTLWVIENQTIEEIDG 154 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~ 154 (184)
|.|++|+.|++++++.
T Consensus 218 D~viVM~EG~vvE~G~ 233 (267)
T COG4167 218 DQVLVMHEGEVVERGS 233 (267)
T ss_pred ccEEEEecCceeecCC
Confidence 9999999999998654
No 338
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.93 E-value=1.6e-25 Score=199.00 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=120.3
Q ss_pred cccCcccCC---ceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH---hc---CCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQ---QGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF---NLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~---~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~---~~~----~~~~~~~l~~ 60 (184)
+|+|..+|. +|+|.+++ ++.+||++|++. +.+..|+.+.+.. .. ... .+++.++++.
T Consensus 70 ~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~ 147 (617)
T TIGR00955 70 ALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDL--FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQA 147 (617)
T ss_pred HHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccc--cCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 578988875 79998765 246899999874 3344455554421 11 111 2347788999
Q ss_pred CCCCccccccccc------CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928 61 FGLAGHAHTIKMK------DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE 131 (184)
Q Consensus 61 ~~l~~~~~~~~~~------~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~ 131 (184)
+|+.+..+. +++ .|||||||||+||++|+.+|++++|||||+|||+.+...+++.+++. +.|||+++|++
T Consensus 148 lgL~~~~~t-~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~ 226 (617)
T TIGR00955 148 LGLRKCANT-RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226 (617)
T ss_pred cCchhcCcC-ccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 999765543 565 59999999999999999999999999999999999999999998764 68999999998
Q ss_pred H-HHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 132 R-LIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~-~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
. .+...+|++++|++|+++. .|+.++.
T Consensus 227 ~~~i~~~~D~i~ll~~G~~v~-~G~~~~~ 254 (617)
T TIGR00955 227 SSELFELFDKIILMAEGRVAY-LGSPDQA 254 (617)
T ss_pred CHHHHHHhceEEEeeCCeEEE-ECCHHHH
Confidence 5 7788999999999999974 5655443
No 339
>KOG0058|consensus
Probab=99.93 E-value=8.2e-26 Score=197.46 Aligned_cols=153 Identities=28% Similarity=0.340 Sum_probs=115.6
Q ss_pred ccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhh---------C
Q psy11928 3 AHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGT---------F 61 (184)
Q Consensus 3 ~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~---------~ 61 (184)
|..++.|++|+|.+++ +++||+|.|+|- +. .-++.+++... .+.+.+++....++ |
T Consensus 514 L~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv--LF-s~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~ 590 (716)
T KOG0058|consen 514 LLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPV--LF-SGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNF 590 (716)
T ss_pred HHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccce--ee-cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC
Confidence 4457899999999875 568999999984 22 23455665421 13344444433322 2
Q ss_pred --CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 62 --GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 --~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
|.+..-. .+-.+||||||||++|||||+.+|.||||||.||+||.++...+.+.+.+. +.|||+|.|.++-+++
T Consensus 591 p~gY~T~VG-EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~- 668 (716)
T KOG0058|consen 591 PDGYNTVVG-EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH- 668 (716)
T ss_pred ccccccccC-CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-
Confidence 2222222 256799999999999999999999999999999999999999999999754 6899999999999986
Q ss_pred cCeEEEEeCCeEEEecCChhHHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
+|+|+++++|++++ .|+.++..+
T Consensus 669 Ad~Ivvi~~G~V~E-~G~h~eLl~ 691 (716)
T KOG0058|consen 669 ADQIVVIDKGRVVE-MGTHDELLS 691 (716)
T ss_pred ccEEEEEcCCeEEe-cccHHHHhh
Confidence 79999999999987 566555443
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=1.7e-25 Score=213.14 Aligned_cols=142 Identities=25% Similarity=0.348 Sum_probs=111.7
Q ss_pred cccCcccCCceeEEec-C-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc----------------------
Q psy11928 2 YAHCDLQPQQGELKKN-H-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---------------------- 47 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~-~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---------------------- 47 (184)
.|+|+++|++|+|.++ + ++.||||+|++. +.. .|+.+++....
T Consensus 430 lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~--LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~ 506 (1466)
T PTZ00265 430 LIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPL--LFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE 506 (1466)
T ss_pred HHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEeccccc--chh-ccHHHHHHhcCCCccccchhccccccccccccc
Confidence 5789999999999983 2 346999999974 332 36666654310
Q ss_pred ------------------------------------CCCHHHHHHHHhhCCCCcccc----------cccccCCChhHHH
Q psy11928 48 ------------------------------------NLPYEKARKQLGTFGLAGHAH----------TIKMKDLSGGQKA 81 (184)
Q Consensus 48 ------------------------------------~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgG~kq 81 (184)
..+.+++.+.++.+++.+... .....+|||||||
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQ 586 (1466)
T PTZ00265 507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQ 586 (1466)
T ss_pred cccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHH
Confidence 012345666777776654311 2357899999999
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
|++|||||+.+|+||||||||++||+.+...+.+.|.+. +.|+|+|||+++.+. .||+|++|++|
T Consensus 587 RiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 587 RISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence 999999999999999999999999999999999999765 579999999999985 79999999986
No 341
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=8.6e-25 Score=165.97 Aligned_cols=94 Identities=26% Similarity=0.329 Sum_probs=82.1
Q ss_pred HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11928 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA--PDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSH 129 (184)
Q Consensus 55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~--p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 129 (184)
.+.++.+++.....++++.+||||||||++||||++.+ |+++||||||++||+.++..+.+.+++ .+.|||+|||
T Consensus 68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 35788889875322358999999999999999999999 999999999999999999999998876 3789999999
Q ss_pred CHHHHHhhcCeEEEEeCCeE
Q psy11928 130 DERLIRDTECTLWVIENQTI 149 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i 149 (184)
+++++. .||++++|++|+.
T Consensus 148 ~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 148 NLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred CHHHHH-hCCEEEEECCCCC
Confidence 999985 7999999987654
No 342
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.93 E-value=1.8e-25 Score=195.40 Aligned_cols=127 Identities=29% Similarity=0.373 Sum_probs=102.5
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc-
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT- 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~- 69 (184)
.|+|+++|++|+|.+++ ++.||||||++. + ...|+.+++... ...+++++.+.++..+++++...
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~--l-F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~l 456 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAH--L-FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSL 456 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcc--c-ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 57899999999999875 357999999984 3 245777777653 23456777788887777543221
Q ss_pred ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928 70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE 131 (184)
Q Consensus 70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~ 131 (184)
..-..||||||||++||||++.+|+++|||||||+||+.+...+.+.+.+. ++|+|+|||++
T Consensus 457 p~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 457 PDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 123579999999999999999999999999999999999999999999875 57999999974
No 343
>KOG0062|consensus
Probab=99.92 E-value=6e-26 Score=191.65 Aligned_cols=111 Identities=31% Similarity=0.501 Sum_probs=103.3
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 136 (184)
+|..+|++++...+++++||||+|.|++||||+..+||+||||||||+||..+..||.++|..++.|+|+||||..|+..
T Consensus 181 ~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNT 260 (582)
T ss_pred HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHH
Confidence 88899999887777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhHHHHHHHHHh
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYRKELLEAL 167 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~~~~~~~~ 167 (184)
+|..|+-+++-++..|.|+++.+.+..-+..
T Consensus 261 V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~ 291 (582)
T KOG0062|consen 261 VCTDIIHLENLKLDYYKGNYSQFVKTKPEAK 291 (582)
T ss_pred HHHHHHHHhhhhhhhhcCcHHHHHHhhHHhh
Confidence 9999999999899889999998877655444
No 344
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.92 E-value=6.2e-25 Score=210.10 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=121.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
.|.|+++ ++|+|.+++ |.+++|+||+|. +. ..|+.+++.-....+.+++.+.++.+++.+.....
T Consensus 1264 lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~--LF-~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~l 1339 (1490)
T TIGR01271 1264 ALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVF--IF-SGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQF 1339 (1490)
T ss_pred HHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCc--cC-ccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhC
Confidence 4678876 799998764 567999999984 32 24677776432234567788888888775432211
Q ss_pred ----------cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928 71 ----------KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 71 ----------~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~ 138 (184)
.-.+||||||||++|||||+.+|+||||||||++||..+...+.+.|++. ++|||+|||.++.+.. |
T Consensus 1340 p~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~ 1418 (1490)
T TIGR01271 1340 PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-C 1418 (1490)
T ss_pred ccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-C
Confidence 12479999999999999999999999999999999999999999999865 5799999999999975 8
Q ss_pred CeEEEEeCCeEEEecCChhHHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
|+|++|++|+++++ |++.++.
T Consensus 1419 DrIlvL~~G~ivE~-g~p~~Ll 1439 (1490)
T TIGR01271 1419 QQFLVIEGSSVKQY-DSIQKLL 1439 (1490)
T ss_pred CEEEEEECCEEEEe-CCHHHHH
Confidence 99999999999874 4554443
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=9.1e-25 Score=209.38 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=115.0
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCC-----------Ccccccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGL-----------AGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~ 70 (184)
.|+|+++|++|+|.+++ .+||++|++. +. ..|+.+++......+.++..+.++..++ ..... .
T Consensus 683 ~l~g~~~~~~G~i~~~g--~i~yv~Q~~~--l~-~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~ 756 (1522)
T TIGR00957 683 ALLAEMDKVEGHVHMKG--SVAYVPQQAW--IQ-NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIG-E 756 (1522)
T ss_pred HHhCCCccCCcEEEECC--EEEEEcCCcc--cc-CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceec-C
Confidence 57899999999998875 6999999974 32 3577777654322233333333322222 11222 3
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh-----cCcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE-----YKGGVIIVSHDERLIRDTECTLWVIE 145 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~-----~~~tiiivsHd~~~~~~~~~~i~~l~ 145 (184)
+..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+ .++|+|+|||+++.+.. ||+|++|+
T Consensus 757 ~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~ 835 (1522)
T TIGR00957 757 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMS 835 (1522)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEec
Confidence 6789999999999999999999999999999999999999999988742 25799999999999976 99999999
Q ss_pred CCeEEEecCChhHH
Q psy11928 146 NQTIEEIDGDFDDY 159 (184)
Q Consensus 146 ~g~i~~~~~~~~~~ 159 (184)
+|++.+ .|++++.
T Consensus 836 ~G~i~~-~g~~~~l 848 (1522)
T TIGR00957 836 GGKISE-MGSYQEL 848 (1522)
T ss_pred CCeEEe-eCCHHHH
Confidence 999975 5665544
No 346
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.2e-25 Score=175.40 Aligned_cols=149 Identities=22% Similarity=0.318 Sum_probs=116.6
Q ss_pred cccCcccCCceeEEec------------CCeEEEEEecCCCCCCCccCCHHHHHH--------Hhc-CCCH---HHHHHH
Q psy11928 2 YAHCDLQPQQGELKKN------------HRLRIGRFDQHSGEHLTAEETPAEYLQ--------RLF-NLPY---EKARKQ 57 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~------------~~~~ig~v~q~~~~~l~~~~~~~~~~~--------~~~-~~~~---~~~~~~ 57 (184)
+++|...|++|.+... .+++||+|.-.....+....++.+.+. .++ ..++ .++..+
T Consensus 76 ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l 155 (257)
T COG1119 76 LLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL 155 (257)
T ss_pred HHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH
Confidence 5789999999988643 256799987643222233333332211 111 2222 457788
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-----CcEEEEEecCHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-----KGGVIIVSHDER 132 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsHd~~ 132 (184)
++.+|+....+ ++..+||-||||||.|||||+.+|++|||||||+|||..++..+.+.+.+. +.++|+|||..+
T Consensus 156 le~~g~~~la~-r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 156 LELLGAKHLAD-RPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred HHHcchhhhcc-CchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 99999987554 689999999999999999999999999999999999999999999999765 348999999999
Q ss_pred HHHhhcCeEEEEeCCeEEE
Q psy11928 133 LIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~ 151 (184)
++....++++.+++|+++.
T Consensus 235 Ei~~~~th~lll~~g~v~~ 253 (257)
T COG1119 235 EIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hcccccceEEEeeCCceee
Confidence 9998889999999999864
No 347
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.92 E-value=1.2e-24 Score=208.11 Aligned_cols=150 Identities=19% Similarity=0.257 Sum_probs=112.6
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCc-----------ccccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG-----------HAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~ 70 (184)
.|+|+.+|++|+|.+++ .|+|++|++. +.. .|+.+++........++..+.++..++.. ... .
T Consensus 471 ~l~G~~~~~~G~i~~~g--~iayv~Q~~~--l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg-~ 544 (1490)
T TIGR01271 471 MIMGELEPSEGKIKHSG--RISFSPQTSW--IMP-GTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLG-E 544 (1490)
T ss_pred HHhCCCCCCCceEEECC--EEEEEeCCCc--cCC-ccHHHHHHhccccchHHHHHHHHHHhHHHHHHhcccccccccc-C
Confidence 57899999999999865 6999999974 333 36777665322222222222222222211 122 3
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HHhc--CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA-INEY--KGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
+..+||||||||++||||++.+|+++||||||++||+.+.+.+.+. +... +.|+|+|||+++.+.. ||++++|++|
T Consensus 545 ~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g 623 (1490)
T TIGR01271 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEG 623 (1490)
T ss_pred cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECC
Confidence 5789999999999999999999999999999999999999999874 5443 6899999999999975 9999999999
Q ss_pred eEEEecCChhHH
Q psy11928 148 TIEEIDGDFDDY 159 (184)
Q Consensus 148 ~i~~~~~~~~~~ 159 (184)
++.. .|++++.
T Consensus 624 ~i~~-~g~~~~l 634 (1490)
T TIGR01271 624 VCYF-YGTFSEL 634 (1490)
T ss_pred EEEE-EcCHHHH
Confidence 9875 5555544
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.92 E-value=1e-24 Score=207.39 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=117.2
Q ss_pred cccCccc---CCceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHH---hc---CCCH----HHHHHHHhhC
Q psy11928 2 YAHCDLQ---PQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF---NLPY----EKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~---p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~---~~~~----~~~~~~l~~~ 61 (184)
+|+|+.+ |++|+|.+++ ++.+||++|++. +....|+.+.+.. .. ..+. +++.++++.+
T Consensus 808 ~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~--~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l 885 (1394)
T TIGR00956 808 VLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDL--HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLL 885 (1394)
T ss_pred HHhCCCCCCCcceeEEEECCEECChhhhcceeeeccccc--CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 5889887 7899998765 346999999863 2334455554432 11 1121 3467899999
Q ss_pred CCCccccccccc----CCChhHHHHHHHHHHHhcCCC-EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928 62 GLAGHAHTIKMK----DLSGGQKARVALAELTLNAPD-VIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL 133 (184)
Q Consensus 62 ~l~~~~~~~~~~----~LSgG~kqrv~laral~~~p~-illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~ 133 (184)
|+.+..+ +.++ +|||||||||+||++|+.+|+ +|+|||||+|||+.+...+.+.|++. +.|||++||+++.
T Consensus 886 ~L~~~~d-~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 886 EMESYAD-AVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred CChhhCC-CeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 9986655 4666 799999999999999999997 99999999999999999999999764 6799999999986
Q ss_pred -HHhhcCeEEEEeCC-eEEEecCC
Q psy11928 134 -IRDTECTLWVIENQ-TIEEIDGD 155 (184)
Q Consensus 134 -~~~~~~~i~~l~~g-~i~~~~~~ 155 (184)
+...+|++++|++| +++. .|+
T Consensus 965 ~~~~~~D~vl~L~~GG~iv~-~G~ 987 (1394)
T TIGR00956 965 ILFEEFDRLLLLQKGGQTVY-FGD 987 (1394)
T ss_pred HHHHhcCEEEEEcCCCEEEE-ECC
Confidence 44679999999987 8865 444
No 349
>KOG0055|consensus
Probab=99.92 E-value=7.7e-25 Score=200.55 Aligned_cols=151 Identities=26% Similarity=0.338 Sum_probs=119.5
Q ss_pred CcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCC----------
Q psy11928 5 CDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFG---------- 62 (184)
Q Consensus 5 G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~---------- 62 (184)
..+.|++|.|.+++ |+++|.|.|+|. | ...|+.+++... .+.+.+++.+.++..+
T Consensus 1038 RfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~--L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~ 1114 (1228)
T KOG0055|consen 1038 RFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV--L-FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQ 1114 (1228)
T ss_pred HhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch--h-hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcC
Confidence 46789999998864 568999999984 3 245677776533 2235555555544433
Q ss_pred -CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcC
Q psy11928 63 -LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 63 -l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~ 139 (184)
.+..... +-.+||||||||++||||++.+|+||||||.||+||.++.+.+.+.|.+. +.|.|+|.|.+.-+.. ||
T Consensus 1115 GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD 1192 (1228)
T KOG0055|consen 1115 GYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-AD 1192 (1228)
T ss_pred cccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CC
Confidence 2222222 56799999999999999999999999999999999999999999999865 7899999999999975 89
Q ss_pred eEEEEeCCeEEEecCChhHHHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
.|+++++|+|++ .|+-+++.+
T Consensus 1193 ~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1193 VIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred EEEEEECCEEEe-cccHHHHHh
Confidence 999999999987 677666554
No 350
>KOG0059|consensus
Probab=99.92 E-value=4.3e-25 Score=202.52 Aligned_cols=149 Identities=28% Similarity=0.376 Sum_probs=125.0
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCH----HHHHHHHhhCCC
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EKARKQLGTFGL 63 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~l 63 (184)
.++|..+|++|++.+.+ ++.+||+||... +.+|+++++ +++....+.+. +.+..+++.+++
T Consensus 610 mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL-~~~arlrG~~~~di~~~v~~ll~~~~L 688 (885)
T KOG0059|consen 610 MLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHL-EFYARLRGLPRSDIGSAIEKLLRLVGL 688 (885)
T ss_pred HHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHH-HHHHHHcCCChhHHHHHHHHHHHHcCC
Confidence 47899999999998742 345999999864 456666653 34444445443 346778999999
Q ss_pred CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
.++.+ ++++.||||+|+|+++|.|++.+|++++|||||+|+||.+++.+++++.+. +++||++||.+++++.+|+|
T Consensus 689 ~~~~~-~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 689 GPYAN-KQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTR 767 (885)
T ss_pred hhhhc-cchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhh
Confidence 98876 589999999999999999999999999999999999999999999999764 34999999999999999999
Q ss_pred EEEEeCCeEEEe
Q psy11928 141 LWVIENQTIEEI 152 (184)
Q Consensus 141 i~~l~~g~i~~~ 152 (184)
+.+|.+|++..+
T Consensus 768 ~aImv~G~l~ci 779 (885)
T KOG0059|consen 768 TAIMVIGQLRCI 779 (885)
T ss_pred hheeecCeeEEe
Confidence 999999998753
No 351
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=8.3e-24 Score=166.65 Aligned_cols=96 Identities=27% Similarity=0.316 Sum_probs=84.5
Q ss_pred HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11928 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSH 129 (184)
Q Consensus 55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 129 (184)
.+.++.+++.....++++.+|||||||||+||||++.+| +++||||||++||+.++..+.+.+.+ .+.|||+|||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 567899999753234589999999999999999999998 59999999999999999999998865 3679999999
Q ss_pred CHHHHHhhcCeEEEE------eCCeEEE
Q psy11928 130 DERLIRDTECTLWVI------ENQTIEE 151 (184)
Q Consensus 130 d~~~~~~~~~~i~~l------~~g~i~~ 151 (184)
|++++. +||++++| ++|+|++
T Consensus 198 ~~~~~~-~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 198 DEDTIR-AADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred CHHHHH-hCCEEEEeCCCccccCCEEEe
Confidence 999985 89999999 8888875
No 352
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.2e-24 Score=160.69 Aligned_cols=74 Identities=42% Similarity=0.594 Sum_probs=69.6
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
||+||+||++|||+++.+|++++|||||++||+.++..+.+.+.+. +.|++++||+++++..+||+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999999998764 4699999999999999999999998874
No 353
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=2.6e-24 Score=206.01 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=117.1
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc----------cc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT----------IK 71 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 71 (184)
.|+|.++|++|.+. ..+..|+|++|+|. +. ..|+.+++......++++..+.++..++.++... .+
T Consensus 662 lLlG~~~~~~G~i~-~~~~~Iayv~Q~p~--Lf-~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~ 737 (1495)
T PLN03232 662 AMLGELSHAETSSV-VIRGSVAYVPQVSW--IF-NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGER 737 (1495)
T ss_pred HHhCCCcccCCCEE-EecCcEEEEcCccc--cc-cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCC
Confidence 47899999998774 34567999999984 32 4577777764433456666666666665432211 13
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHHh--cCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD-AINE--YKGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~--~~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
..+||||||||++||||+..+|+|+|||||||+||+.+.+.+.+ .+.. .++|+|+|||++..+. .||+|++|++|+
T Consensus 738 G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~ 816 (1495)
T PLN03232 738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGM 816 (1495)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCE
Confidence 45799999999999999999999999999999999998887755 4543 3689999999999876 589999999999
Q ss_pred EEEecCChhHHH
Q psy11928 149 IEEIDGDFDDYR 160 (184)
Q Consensus 149 i~~~~~~~~~~~ 160 (184)
+++ .|++++..
T Consensus 817 i~~-~Gt~~eL~ 827 (1495)
T PLN03232 817 IKE-EGTFAELS 827 (1495)
T ss_pred EEE-ecCHHHHH
Confidence 976 56665543
No 354
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.92 E-value=4.6e-24 Score=202.94 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=116.4
Q ss_pred cccCcc----cCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hc-------CCCHH----H
Q psy11928 2 YAHCDL----QPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF-------NLPYE----K 53 (184)
Q Consensus 2 ~~~G~~----~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~-------~~~~~----~ 53 (184)
+|+|+. +|++|+|.+++ +..++|++|+.. +.+..|+.+.+.. .. +.+++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 183 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV--HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKH 183 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccc--cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 577875 57999998764 235999999863 2333444443321 11 11221 2
Q ss_pred -HHHHHhhCCCCccccc----ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEE
Q psy11928 54 -ARKQLGTFGLAGHAHT----IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGV 124 (184)
Q Consensus 54 -~~~~l~~~~l~~~~~~----~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~ti 124 (184)
.+.+++.+|+++..+. ..++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++. +.||
T Consensus 184 ~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tv 263 (1394)
T TIGR00956 184 IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTP 263 (1394)
T ss_pred HHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEE
Confidence 2457899999765442 245789999999999999999999999999999999999999999998753 6799
Q ss_pred EEEecCH-HHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 125 IIVSHDE-RLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 125 iivsHd~-~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
|+++|++ +.+...+|++++|++|+++. .|+.++
T Consensus 264 ii~~Hq~~~~i~~l~D~v~~L~~G~iv~-~G~~~~ 297 (1394)
T TIGR00956 264 LVAIYQCSQDAYELFDKVIVLYEGYQIY-FGPADK 297 (1394)
T ss_pred EEEecCCCHHHHHhhceEEEEeCCeEEE-ECCHHH
Confidence 9999996 78888999999999999864 565544
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=3.4e-24 Score=205.91 Aligned_cols=152 Identities=18% Similarity=0.261 Sum_probs=117.5
Q ss_pred cccCcccCCc-eeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc----------cc
Q psy11928 2 YAHCDLQPQQ-GELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH----------TI 70 (184)
Q Consensus 2 ~~~G~~~p~~-G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~ 70 (184)
.|+|.++|++ |+|.+ +.+|+|++|+|. +. ..|+.+++......++++..+.++..++.++.. ..
T Consensus 662 lLlG~~~~~~GG~I~l--~~~Iayv~Q~p~--Lf-ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe 736 (1622)
T PLN03130 662 AMLGELPPRSDASVVI--RGTVAYVPQVSW--IF-NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGE 736 (1622)
T ss_pred HHHHhhccCCCceEEE--cCeEEEEcCccc--cC-CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccC
Confidence 4789999999 99975 567999999984 32 457777776543345566666666665543221 11
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHh--cCcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAINE--YKGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~--~~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
+..+||||||||++||||+..+|+|+|||||||+||+.+.+.+. +.+.. .++|+|+|||++..+. .||+|++|++|
T Consensus 737 ~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G 815 (1622)
T PLN03130 737 RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEG 815 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCC
Confidence 34679999999999999999999999999999999999887765 45554 3689999999999876 58999999999
Q ss_pred eEEEecCChhHHH
Q psy11928 148 TIEEIDGDFDDYR 160 (184)
Q Consensus 148 ~i~~~~~~~~~~~ 160 (184)
++.+ .|++++..
T Consensus 816 ~i~e-~Gt~~eL~ 827 (1622)
T PLN03130 816 MIKE-EGTYEELS 827 (1622)
T ss_pred EEEE-eCCHHHHH
Confidence 9976 66666553
No 356
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=166.71 Aligned_cols=150 Identities=25% Similarity=0.296 Sum_probs=117.1
Q ss_pred CcccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--c----CCC-------HHHHHH
Q psy11928 1 MYAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--F----NLP-------YEKARK 56 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~----~~~-------~~~~~~ 56 (184)
++++|-+.|++|+|.+++ ...++-|||+|.....+..|+.+++... . +.. .+..++
T Consensus 50 n~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~ 129 (263)
T COG1101 50 NAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRE 129 (263)
T ss_pred HHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHH
Confidence 368999999999998764 2348889999863334555665554321 1 111 122444
Q ss_pred HHhhC--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEecC
Q psy11928 57 QLGTF--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA----INEYKGGVIIVSHD 130 (184)
Q Consensus 57 ~l~~~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~----l~~~~~tiiivsHd 130 (184)
.+..+ |++..+.+ ++.-|||||||-++|+.|.+++|+||+|||-|++|||.....+++. +.+.+.|.+||||+
T Consensus 130 ~l~~l~lgLenrL~~-~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn 208 (263)
T COG1101 130 RLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN 208 (263)
T ss_pred HHhhcccchhhhhcC-hhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc
Confidence 55555 55666654 8999999999999999999999999999999999999998887754 45668899999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEE
Q psy11928 131 ERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~ 151 (184)
++.+..+.+|.++|+.|+|+-
T Consensus 209 m~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 209 MEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHhhCCeEEEEeCCeEEE
Confidence 999999999999999999863
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.91 E-value=5e-24 Score=202.80 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=116.3
Q ss_pred cccCcccC--CceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH---hc---CCCH----HHHHHHHhhC
Q psy11928 2 YAHCDLQP--QQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF---NLPY----EKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p--~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~---~~~~----~~~~~~l~~~ 61 (184)
+|+|..++ .+|+|.+++ ++.+||++|++. +.+..|+.+.+.. .. ..+. +.+.++++.+
T Consensus 925 ~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~l 1002 (1470)
T PLN03140 925 VLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI--HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELV 1002 (1470)
T ss_pred HHcCCCCCCcccceEEECCccCChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHC
Confidence 57888763 689998764 245899999863 3334455544321 11 1121 2467899999
Q ss_pred CCCcccccccc-----cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH-
Q psy11928 62 GLAGHAHTIKM-----KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER- 132 (184)
Q Consensus 62 ~l~~~~~~~~~-----~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~- 132 (184)
|+.+..+ .++ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++. +.|||++||+++
T Consensus 1003 gL~~~~~-~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1003 ELDNLKD-AIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred CChhHhC-CccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 9986554 354 689999999999999999999999999999999999999999998764 689999999998
Q ss_pred HHHhhcCeEEEEeC-CeEEEecCCh
Q psy11928 133 LIRDTECTLWVIEN-QTIEEIDGDF 156 (184)
Q Consensus 133 ~~~~~~~~i~~l~~-g~i~~~~~~~ 156 (184)
.+...+|++++|++ |+++. .|+.
T Consensus 1082 ~i~~~~D~vllL~~gG~~v~-~G~~ 1105 (1470)
T PLN03140 1082 DIFEAFDELLLMKRGGQVIY-SGPL 1105 (1470)
T ss_pred HHHHhCCEEEEEcCCCEEEE-ECCc
Confidence 46778999999986 78764 4543
No 358
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=163.16 Aligned_cols=157 Identities=24% Similarity=0.355 Sum_probs=127.4
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCC--CCCCccCCHHHHHH--------HhcC---CCHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSG--EHLTAEETPAEYLQ--------RLFN---LPYEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~--~~l~~~~~~~~~~~--------~~~~---~~~~~~~ 55 (184)
+|+|-.+|++|++.+.+ +..||.-||.|. +.+++++|+.-... ...+ ..+.++.
T Consensus 50 ~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~rid 129 (249)
T COG4674 50 VITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRID 129 (249)
T ss_pred eecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHH
Confidence 68999999999998764 346899999985 45565555321110 0111 1235788
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL 133 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~ 133 (184)
++|...|+.+..+ +..+.||.||||++.|+..++++|++|++|||++|+.-....+.-+++++. +.+|++|.||+.|
T Consensus 130 e~La~igL~~~~~-~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~F 208 (249)
T COG4674 130 ELLATIGLGDERD-RLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGF 208 (249)
T ss_pred HHHHHcccchhhh-hhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHH
Confidence 9999999987665 588999999999999999999999999999999999999999999999876 4699999999999
Q ss_pred HHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 134 IRDTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
+..++++|-+|+.|.+.. .|+.++..
T Consensus 209 vr~~A~~VTVlh~G~VL~-EGsld~v~ 234 (249)
T COG4674 209 VREIADKVTVLHEGSVLA-EGSLDEVQ 234 (249)
T ss_pred HHHhhheeEEEeccceee-cccHHHhh
Confidence 999999999999999864 67765543
No 359
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=9.7e-24 Score=202.37 Aligned_cols=151 Identities=20% Similarity=0.245 Sum_probs=113.9
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHH---------HHHHhhC--CCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKA---------RKQLGTF--GLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~ 70 (184)
.|+|+++|++|+|... ..|||++|++. +. ..|+.+++........++. .+.++.+ |+..... +
T Consensus 705 ~i~G~~~~~~G~i~~~--~~i~yv~Q~~~--l~-~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~-~ 778 (1560)
T PTZ00243 705 SLLSQFEISEGRVWAE--RSIAYVPQQAW--IM-NATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG-E 778 (1560)
T ss_pred HHhcCCCCCCcEEEEC--CeEEEEeCCCc--cC-CCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc-C
Confidence 5789999999999863 57999999974 32 3466676643221112222 2234444 5544444 4
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HH-h-cCcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA-IN-E-YKGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~-~-~~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
+..+|||||||||+||||++.+|+++||||||++||+.+...+.+. +. . .++|+|+|||+++.+. .||++++|++|
T Consensus 779 ~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G 857 (1560)
T PTZ00243 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDG 857 (1560)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 7899999999999999999999999999999999999988877653 32 2 2689999999999996 59999999999
Q ss_pred eEEEecCChhHHH
Q psy11928 148 TIEEIDGDFDDYR 160 (184)
Q Consensus 148 ~i~~~~~~~~~~~ 160 (184)
++.. .|+++++.
T Consensus 858 ~i~~-~G~~~~l~ 869 (1560)
T PTZ00243 858 RVEF-SGSSADFM 869 (1560)
T ss_pred EEEE-ecCHHHHH
Confidence 9964 66666553
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.91 E-value=1.3e-23 Score=199.88 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=118.3
Q ss_pred cccCcccCC---ceeEEecC--------CeEEEEEecCCC--CCCCccCCHHHHHHHhcC----------CCH-H-----
Q psy11928 2 YAHCDLQPQ---QGELKKNH--------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFN----------LPY-E----- 52 (184)
Q Consensus 2 ~~~G~~~p~---~G~i~~~~--------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~----------~~~-~----- 52 (184)
+|+|.++|+ +|+|.+++ ++.++|++|+.. +.+|+.+|+... ..... ... +
T Consensus 210 ~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~-a~~~~~~~~~~~~~~~~~~ek~~~~ 288 (1470)
T PLN03140 210 ALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS-ARCQGVGTRYDLLSELARREKDAGI 288 (1470)
T ss_pred HHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHH-HHhcCCCCcccchhhcCHHHHhccC
Confidence 689999998 99998764 356999999863 344555543211 11110 000 0
Q ss_pred ----------------------HHHHHHhhCCCCcccc----cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q psy11928 53 ----------------------KARKQLGTFGLAGHAH----TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106 (184)
Q Consensus 53 ----------------------~~~~~l~~~~l~~~~~----~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD 106 (184)
.+..+++.+|+++..+ ++.++.|||||||||+||++++.+|++++|||||+|||
T Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLD 368 (1470)
T PLN03140 289 FPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368 (1470)
T ss_pred CCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCcc
Confidence 1345788999975332 34678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CcEEEEEecCH-HHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 107 IESIDALADAINEY----KGGVIIVSHDE-RLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 107 ~~~~~~l~~~l~~~----~~tiiivsHd~-~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
+.+...+.+.|++. +.|+|+++|+. .++..++|++++|++|+++. .|+.++
T Consensus 369 s~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy-~G~~~~ 424 (1470)
T PLN03140 369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY-QGPRDH 424 (1470)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEE-eCCHHH
Confidence 99999999998764 67999999996 68888999999999999974 555544
No 361
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.4e-23 Score=163.77 Aligned_cols=161 Identities=22% Similarity=0.230 Sum_probs=125.2
Q ss_pred cccCcccCCceeEEecCCeEEEEEecC---CCCCCCccCCHHHHHHHhcCCCH----HHHHHHHhhCCCCcccccccccC
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQH---SGEHLTAEETPAEYLQRLFNLPY----EKARKQLGTFGLAGHAHTIKMKD 74 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~---~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~ 74 (184)
+|+|.++|++|+|..+++- +++..- ..+.+|+.+|+... ....+++. ++++++.+.-.|.++.+ .|++.
T Consensus 72 liaGi~~Pt~G~v~v~G~v--~~li~lg~Gf~pelTGreNi~l~-~~~~G~~~~ei~~~~~eIieFaELG~fi~-~Pvkt 147 (249)
T COG1134 72 LIAGIYKPTSGKVKVTGKV--APLIELGAGFDPELTGRENIYLR-GLILGLTRKEIDEKVDEIIEFAELGDFID-QPVKT 147 (249)
T ss_pred HHhCccCCCCceEEEcceE--ehhhhcccCCCcccchHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHhh-Cchhh
Confidence 6899999999999887643 222211 11457787876433 33344443 34667777778887776 59999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~ 151 (184)
+|.||+-|++++.|...+|+|||+||-.+.-|+.=++...+.+.++ +.|||+||||++.+.++||+++++++|+++.
T Consensus 148 YSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~ 227 (249)
T COG1134 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227 (249)
T ss_pred ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence 9999999999999999999999999999999998877777666554 5899999999999999999999999999975
Q ss_pred ecCChhHHHHHHHHHh
Q psy11928 152 IDGDFDDYRKELLEAL 167 (184)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (184)
.|++++..+.+.+..
T Consensus 228 -~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 228 -EGSPEEVIPAYEEDL 242 (249)
T ss_pred -cCCHHHHHHHHHHhh
Confidence 677766555544443
No 362
>KOG0927|consensus
Probab=99.90 E-value=1.2e-23 Score=178.79 Aligned_cols=110 Identities=35% Similarity=0.577 Sum_probs=100.6
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCc-EEEEEecCHH
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG-GVIIVSHDER 132 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-tiiivsHd~~ 132 (184)
+..+|..+|+......+++.+||||++.|++|||+|..+|++|||||||||||+.++.||.++|.++.. +++++||+.+
T Consensus 201 ~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QD 280 (614)
T KOG0927|consen 201 AAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQD 280 (614)
T ss_pred HHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchh
Confidence 445788888876666678999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred HHHhhcCeEEEEeCCeEEEecCChhHHHHHH
Q psy11928 133 LIRDTECTLWVIENQTIEEIDGDFDDYRKEL 163 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~~ 163 (184)
++..+|+.|+-++.++.+.|.|+++.|....
T Consensus 281 fln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr 311 (614)
T KOG0927|consen 281 FLNGVCTNIIHLDNKKLIYYEGNYDQYVKTR 311 (614)
T ss_pred hhhhHhhhhheecccceeeecCCHHHHhhHH
Confidence 9999999999999999888999999886543
No 363
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.4e-23 Score=177.81 Aligned_cols=150 Identities=19% Similarity=0.262 Sum_probs=119.2
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHH-----hc---CCC----HHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQR-----LF---NLP----YEKARK 56 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~-----~~---~~~----~~~~~~ 56 (184)
.|.|..++++|+|.+++ +..|+|+|.+.. ..+....++.+++.. .. -.+ .+.+.+
T Consensus 304 ~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~ 383 (500)
T COG1129 304 ALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAER 383 (500)
T ss_pred HHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHH
Confidence 46788889999999875 235999998764 334445555544321 11 011 123567
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL 133 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~ 133 (184)
+.+.+++...-.+.++.+||||.||||.|||.|..+|++|||||||.|.|.-++.++.++++++ |.+||++|-++.+
T Consensus 384 ~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpE 463 (500)
T COG1129 384 YIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPE 463 (500)
T ss_pred HHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence 7888888543333589999999999999999999999999999999999999999999999765 7899999999999
Q ss_pred HHhhcCeEEEEeCCeEEE
Q psy11928 134 IRDTECTLWVIENQTIEE 151 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i~~ 151 (184)
+..+||||++|.+|+++.
T Consensus 464 ll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 464 LLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHhhCCEEEEEECCEEEE
Confidence 999999999999999964
No 364
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=1.6e-22 Score=162.14 Aligned_cols=99 Identities=21% Similarity=0.327 Sum_probs=86.6
Q ss_pred HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcC---CCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA---PDVIILDEPTNNLDIESIDALADAINEY---KGGVI 125 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tii 125 (184)
.++.++++.+|+......+++.+|||||+||+.||++|+.+ |+++||||||+|||+..+..+.+.++++ +.|||
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvI 226 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVV 226 (261)
T ss_pred HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 45667899999976323458999999999999999999996 7999999999999999999999988764 68999
Q ss_pred EEecCHHHHHhhcCeEEEE------eCCeEEE
Q psy11928 126 IVSHDERLIRDTECTLWVI------ENQTIEE 151 (184)
Q Consensus 126 ivsHd~~~~~~~~~~i~~l------~~g~i~~ 151 (184)
+|||+++++. .||+++.| ++|+++.
T Consensus 227 iitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~ 257 (261)
T cd03271 227 VIEHNLDVIK-CADWIIDLGPEGGDGGGQVVA 257 (261)
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE
Confidence 9999999996 69999999 7888865
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.7e-24 Score=158.03 Aligned_cols=143 Identities=24% Similarity=0.326 Sum_probs=113.5
Q ss_pred ccCcccCCceeEEec-------------------CCeEEEEEecCCC--CCCCccCCHHHHHHHhcCCC----HHHHHHH
Q psy11928 3 AHCDLQPQQGELKKN-------------------HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQ 57 (184)
Q Consensus 3 ~~G~~~p~~G~i~~~-------------------~~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~ 57 (184)
|.|.+.||+|+|.+. .++.||||+|... +....-+-+.+.+.. .+.+ ..++..+
T Consensus 57 LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~L 135 (235)
T COG4778 57 LYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADL 135 (235)
T ss_pred HHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHH
Confidence 568889999999753 1457999999753 222222222232222 2333 2457789
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI 134 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 134 (184)
+.++++.+.++...|..+||||||||.|||.++.+.+||||||||++||..++..+.++|.+. |.++|=+-||.+.-
T Consensus 136 l~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevr 215 (235)
T COG4778 136 LTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVR 215 (235)
T ss_pred HHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHH
Confidence 999999988888899999999999999999999999999999999999999999999999653 67899999999999
Q ss_pred HhhcCeEEEEeC
Q psy11928 135 RDTECTLWVIEN 146 (184)
Q Consensus 135 ~~~~~~i~~l~~ 146 (184)
+..|||++.+..
T Consensus 216 e~vadR~~~~~~ 227 (235)
T COG4778 216 EAVADRLLDVSA 227 (235)
T ss_pred HHHhhheeeccc
Confidence 999999986643
No 366
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.89 E-value=6.8e-23 Score=173.22 Aligned_cols=155 Identities=27% Similarity=0.353 Sum_probs=117.2
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHH---------HHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKAR---------KQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---------~~l~~ 60 (184)
.|.|..+|.+|.|+.++ .++|||+||+-. +. .-|+.+++.... ..+.+++- +++-+
T Consensus 381 ~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe--LF-~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~ 457 (580)
T COG4618 381 LLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE--LF-DGTIAENIARFGEEADPEKVIEAARLAGVHELILR 457 (580)
T ss_pred HHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce--ec-CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHh
Confidence 47899999999999764 468999999873 32 336778877654 33333332 33333
Q ss_pred C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecCHHHHH
Q psy11928 61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN---EYKGGVIIVSHDERLIR 135 (184)
Q Consensus 61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~ 135 (184)
+ |.+...-. --..||||||||++|||||..+|.+++||||-++||.+....+.+.|. +.|.|+|+|||.++.+.
T Consensus 458 lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~ 536 (580)
T COG4618 458 LPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA 536 (580)
T ss_pred CcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh
Confidence 2 22222222 346899999999999999999999999999999999999999988875 45789999999999996
Q ss_pred hhcCeEEEEeCCeEEEecCChhHHHHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDYRKE 162 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~~~~ 162 (184)
.+|+|++|++|++..| |+.++...+
T Consensus 537 -~~Dkilvl~~G~~~~F-G~r~eVLa~ 561 (580)
T COG4618 537 -SVDKILVLQDGRIAAF-GPREEVLAK 561 (580)
T ss_pred -hcceeeeecCChHHhc-CCHHHHHHH
Confidence 5899999999999654 554444433
No 367
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.8e-23 Score=154.48 Aligned_cols=132 Identities=30% Similarity=0.368 Sum_probs=101.7
Q ss_pred cccCcccCCceeEEecCC----------eEEEEEecCCC--CCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNHR----------LRIGRFDQHSG--EHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~----------~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~ 68 (184)
+|+|+..|++|+|.++.. +.+-|+--.+. ..+|+.+|+.++ ...++ .+...+.+.++.+|+.+..+
T Consensus 47 ilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~-~~~~~~~~~~~i~~Al~~vgL~g~~d 125 (209)
T COG4133 47 ILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFW-QRFHGSGNAATIWEALAQVGLAGLED 125 (209)
T ss_pred HHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHH-HHHhCCCchhhHHHHHHHcCcccccc
Confidence 689999999999998631 12233332322 334555553322 22223 34566888999999998776
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR 135 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~ 135 (184)
.++.+||.|||+||+|||.++..+++.||||||++||..++..+..++... |+.||.+||..-.+.
T Consensus 126 -lp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 126 -LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred -cchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 599999999999999999999999999999999999999999999999764 689999999976664
No 368
>KOG0054|consensus
Probab=99.87 E-value=1.1e-21 Score=182.93 Aligned_cols=153 Identities=21% Similarity=0.290 Sum_probs=120.1
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc----------cc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT----------IK 71 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 71 (184)
.|.|..+..+|++.+.+. ++|+||.|. + -.-|+.+++......++++.++.++.-.|..+..- .+
T Consensus 566 AiLGEm~~~sG~v~v~gs--iaYv~Q~pW--I-~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGEr 640 (1381)
T KOG0054|consen 566 AILGEMPKLSGSVAVNGS--VAYVPQQPW--I-QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGER 640 (1381)
T ss_pred HHhcCcccccceEEEcCe--EEEeccccH--h-hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCC
Confidence 478999999999988764 999999984 2 23456676665555567777766655555432211 25
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAINEY--KGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
--+||||||||++||||+.+++||+|||-|+|++|...-+.+. +.++.+ ++|+|+|||.+.++.+ +|.|++|++|+
T Consensus 641 GinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~ 719 (1381)
T KOG0054|consen 641 GINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGK 719 (1381)
T ss_pred ccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCe
Confidence 6789999999999999999999999999999999998766655 455443 5899999999999975 89999999999
Q ss_pred EEEecCChhHHHH
Q psy11928 149 IEEIDGDFDDYRK 161 (184)
Q Consensus 149 i~~~~~~~~~~~~ 161 (184)
|.+ .|++++..+
T Consensus 720 I~~-~Gty~el~~ 731 (1381)
T KOG0054|consen 720 IVE-SGTYEELLK 731 (1381)
T ss_pred Eec-ccCHHHHHh
Confidence 975 788887664
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.87 E-value=1.6e-21 Score=150.67 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=87.0
Q ss_pred CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHh----cCCC
Q psy11928 19 RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTL----NAPD 94 (184)
Q Consensus 19 ~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~----~~p~ 94 (184)
...+|++||++...+ . . ...+++.++++. .+..+ +++.+||||||||++||++++ .+|+
T Consensus 75 ~~~v~~vfq~~~~~~-~---------~---~~~~~~~~~l~~---~~~~~-~~~~~LS~G~kqrl~la~~l~~~~~~~~~ 137 (197)
T cd03278 75 FAEVTLTFDNSDGRY-S---------I---ISQGDVSEIIEA---PGKKV-QRLSLLSGGEKALTALALLFAIFRVRPSP 137 (197)
T ss_pred eEEEEEEEEcCCCce-e---------E---EehhhHHHHHhC---CCccc-cchhhcCHHHHHHHHHHHHHHHhccCCCC
Confidence 357999999985221 0 0 013456667766 33333 579999999999999999997 4679
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 95 VIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 95 illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
++++||||++||+.++..+.+.+.+. +.|||++||+++++. .||+++.+..
T Consensus 138 illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 138 FCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence 99999999999999999999999875 579999999999875 7999987753
No 370
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=3e-22 Score=146.19 Aligned_cols=132 Identities=30% Similarity=0.340 Sum_probs=98.2
Q ss_pred ceeEEecC---------CeEEEEEecCCC--CCCCccCCHHHHHHH-hcC-CCHHHHHHHHhhCCCCcccccccccCCCh
Q psy11928 11 QGELKKNH---------RLRIGRFDQHSG--EHLTAEETPAEYLQR-LFN-LPYEKARKQLGTFGLAGHAHTIKMKDLSG 77 (184)
Q Consensus 11 ~G~i~~~~---------~~~ig~v~q~~~--~~l~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 77 (184)
+|++.++. ++++|++||++- +++++..|+...+.. ..+ ..+..+...+++.|++...+ +.|.+|||
T Consensus 59 ~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~-~dP~tlSG 137 (213)
T COG4136 59 TGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFH-QDPATLSG 137 (213)
T ss_pred eeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhh-cChhhcCc
Confidence 57776542 568999999974 445555553221111 111 11234667899999998776 48999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l----~~~~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
|||.||++.|+|+..|+.++||||||.||..-+.++.+.+ ++.+...|+||||...+. ...||+.+
T Consensus 138 GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 138 GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 9999999999999999999999999999998877766655 456889999999999987 45565543
No 371
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.86 E-value=3.1e-21 Score=150.62 Aligned_cols=90 Identities=23% Similarity=0.197 Sum_probs=77.9
Q ss_pred hhCCCCcccccccccCCChhHHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928 59 GTFGLAGHAHTIKMKDLSGGQKARVALAELTLN----------APDVIILDEPTNNLDIESIDALADAINEY---KGGVI 125 (184)
Q Consensus 59 ~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~----------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tii 125 (184)
...++....+ +++.+||+||+||++||||++. +|+++|+||||++||+.++..+.+.+.++ +.|||
T Consensus 109 ~~g~l~~~l~-~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii 187 (213)
T cd03279 109 PQGEFDRFLA-RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVG 187 (213)
T ss_pred hhcchHHHhc-CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4444555444 5789999999999999999985 57899999999999999999999888765 57999
Q ss_pred EEecCHHHHHhhcCeEEEEeCCeE
Q psy11928 126 IVSHDERLIRDTECTLWVIENQTI 149 (184)
Q Consensus 126 ivsHd~~~~~~~~~~i~~l~~g~i 149 (184)
+|||+++++..+|++++++++|.+
T Consensus 188 ~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 188 VISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred EEECchHHHHhhCcEEEEEecCCC
Confidence 999999999999999999998854
No 372
>KOG0061|consensus
Probab=99.86 E-value=3.2e-21 Score=170.91 Aligned_cols=151 Identities=26% Similarity=0.290 Sum_probs=117.0
Q ss_pred cccCcccC---CceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH-----hc-CCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQP---QQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR-----LF-NLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p---~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~-----~~-~~~----~~~~~~~l~~ 60 (184)
+|+|...+ .+|+|.+++ +...|||.|+.. +.+..|+.|.+.. .. ..+ .++++++++.
T Consensus 75 ~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~--l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~ 152 (613)
T KOG0061|consen 75 ALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDV--LLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISE 152 (613)
T ss_pred HHhccccCCCcceEEEEECCccCchhhhhheeEEEccccc--ccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 46777754 789999886 346999999863 3444455444321 11 112 2468889999
Q ss_pred CCCCccccccccc-----CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH-
Q psy11928 61 FGLAGHAHTIKMK-----DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE- 131 (184)
Q Consensus 61 ~~l~~~~~~~~~~-----~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~- 131 (184)
+|+..-.+ ..++ .+|||||+||+||.-++.+|.||++||||+|||..+...+.+.|++. |+|||++=|.+
T Consensus 153 LgL~~~~~-t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs 231 (613)
T KOG0061|consen 153 LGLEKCAD-TLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS 231 (613)
T ss_pred cCChhhcc-ceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence 99985554 4665 59999999999999999999999999999999999999999988754 78999999996
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCCh
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDF 156 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~ 156 (184)
..+.+.-|++++|.+|+++ |.|+.
T Consensus 232 s~lf~lFD~l~lLs~G~~v-y~G~~ 255 (613)
T KOG0061|consen 232 SELFELFDKLLLLSEGEVV-YSGSP 255 (613)
T ss_pred HHHHHHHhHhhhhcCCcEE-EecCH
Confidence 4566778999999999886 45554
No 373
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=9.1e-20 Score=141.18 Aligned_cols=157 Identities=25% Similarity=0.353 Sum_probs=119.5
Q ss_pred cccCcc--cCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc----CC------CHHHHHHH
Q psy11928 2 YAHCDL--QPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF----NL------PYEKARKQ 57 (184)
Q Consensus 2 ~~~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~~------~~~~~~~~ 57 (184)
+|+|.- ++++|+|.+++ +..|...||.|. .+. .-++.+++.... +. ...++.+.
T Consensus 49 ~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~-ei~-GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~ 126 (251)
T COG0396 49 TIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPV-EIP-GVTNSDFLRAAMNARRGARGILPEFIKELKEK 126 (251)
T ss_pred HHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCc-cCC-CeeHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 345544 67899998764 446888899985 333 334455554221 11 12456778
Q ss_pred HhhCCCCccccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928 58 LGTFGLAGHAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL 133 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~ 133 (184)
++.+++++...+|.++ .+|||||+|..|+.+++.+|++.|||||-||||..+.+.+.+.++++ +.++++|||....
T Consensus 127 ~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rl 206 (251)
T COG0396 127 AELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206 (251)
T ss_pred HHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence 9999998754455665 89999999999999999999999999999999999999888887665 6799999999999
Q ss_pred HHhhc-CeEEEEeCCeEEEecCChhHHHHH
Q psy11928 134 IRDTE-CTLWVIENQTIEEIDGDFDDYRKE 162 (184)
Q Consensus 134 ~~~~~-~~i~~l~~g~i~~~~~~~~~~~~~ 162 (184)
+..+. |++.+|-+|+|+. .|.+ ++.++
T Consensus 207 l~~i~pD~vhvl~~GrIv~-sG~~-el~~~ 234 (251)
T COG0396 207 LDYIKPDKVHVLYDGRIVK-SGDP-ELAEE 234 (251)
T ss_pred HhhcCCCEEEEEECCEEEe-cCCH-HHHHH
Confidence 98764 8999999999986 5555 44333
No 374
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=1.5e-20 Score=157.42 Aligned_cols=140 Identities=23% Similarity=0.320 Sum_probs=111.7
Q ss_pred CcccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcC--C-CHHHHHHHHhhCCCCcccccccccCCCh
Q psy11928 1 MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN--L-PYEKARKQLGTFGLAGHAHTIKMKDLSG 77 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~l~~~~~~~~~~~LSg 77 (184)
++|+|.++|++|. ....+++|=||--.+. ...++.+++....+ . +..-..++++.++++.... +++.+|||
T Consensus 385 k~LAG~ikPdeg~---~~~~~vSyKPQyI~~~--~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-~~v~~LSG 458 (591)
T COG1245 385 KLLAGVIKPDEGS---EEDLKVSYKPQYISPD--YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-RPVDELSG 458 (591)
T ss_pred HHHhccccCCCCC---CccceEeecceeecCC--CCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-cccccCCc
Confidence 4689999999998 4466899999965432 23456665543221 1 1122356888999987665 58999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
||.|||+||.+|+.++|+++||||++.||.+.+-.+-+.|+++ .+|.++|.||+..+..++||+++++.
T Consensus 459 GELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 459 GELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred hhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999999999999999999987777777654 68999999999999999999998864
No 375
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=2.6e-20 Score=170.37 Aligned_cols=101 Identities=26% Similarity=0.320 Sum_probs=86.4
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~ 131 (184)
.+..+|+.....++++.+|||||+|||.||++|+.+| +++||||||+|||+..+..+.+.|+++ |.|||+||||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4677888654234689999999999999999999986 899999999999999999999988754 67999999999
Q ss_pred HHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVI------ENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l------~~g~i~~~~~~~~~~ 159 (184)
+++. .||++++| ++|+++. .++.+++
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv~-~g~~~el 581 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVVA-SGTPEEI 581 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEee-ccCHHHH
Confidence 9987 89999999 8888864 5665554
No 376
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=2.7e-20 Score=170.63 Aligned_cols=101 Identities=26% Similarity=0.327 Sum_probs=87.5
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~ 131 (184)
.++.+|+.....++++.+|||||+|||.||++|+.+| +++||||||+|||+..+..+.+.|+++ |.|||+||||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5788899754234689999999999999999999997 999999999999999999999988654 78999999999
Q ss_pred HHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVI------ENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l------~~g~i~~~~~~~~~~ 159 (184)
+++. .||++++| ++|+++. .++++++
T Consensus 552 ~~i~-~aD~vi~LgpgaG~~~G~iv~-~g~~~e~ 583 (943)
T PRK00349 552 DTIR-AADYIVDIGPGAGVHGGEVVA-SGTPEEI 583 (943)
T ss_pred HHHH-hCCEEEEeccccCCCCCEEee-ccCHHHH
Confidence 9987 59999999 8888864 6666655
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.83 E-value=4.8e-20 Score=143.15 Aligned_cols=131 Identities=27% Similarity=0.321 Sum_probs=95.1
Q ss_pred ccCcccCCceeEEe--------cCCeEEEEEecCC-CCCCCccC--CHHHHHHHhcCCCHHHHHHHHhhCCCCccccccc
Q psy11928 3 AHCDLQPQQGELKK--------NHRLRIGRFDQHS-GEHLTAEE--TPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK 71 (184)
Q Consensus 3 ~~G~~~p~~G~i~~--------~~~~~ig~v~q~~-~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 71 (184)
++|...|++|.+.. .....++++||++ ...++... ++.+.+.. ....++.+.+ + ++
T Consensus 46 l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~---~~~~~~~~~~---------~-~~ 112 (204)
T cd03240 46 LTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF---CHQGESNWPL---------L-DM 112 (204)
T ss_pred HcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceee---echHHHHHHH---------h-cC
Confidence 46888888876531 1245799999987 33333222 33322211 1123333333 2 47
Q ss_pred ccCCChhHHHH------HHHHHHHhcCCCEEEeeCCCCCCCHHHHH-HHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928 72 MKDLSGGQKAR------VALAELTLNAPDVIILDEPTNNLDIESID-ALADAINEY----KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 72 ~~~LSgG~kqr------v~laral~~~p~illlDEPt~~LD~~~~~-~l~~~l~~~----~~tiiivsHd~~~~~~~~~~ 140 (184)
+++||+||+|| ++||++++.+|+++++||||++||+..+. .+.+.+.+. +.|||++||+++++. .||+
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~ 191 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADH 191 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCE
Confidence 89999999996 78999999999999999999999999999 999988764 569999999999875 6999
Q ss_pred EEEEeCC
Q psy11928 141 LWVIENQ 147 (184)
Q Consensus 141 i~~l~~g 147 (184)
++.+++.
T Consensus 192 i~~l~~~ 198 (204)
T cd03240 192 IYRVEKD 198 (204)
T ss_pred EEEEeeC
Confidence 9988653
No 378
>KOG0066|consensus
Probab=99.83 E-value=1.8e-21 Score=162.81 Aligned_cols=110 Identities=28% Similarity=0.525 Sum_probs=101.6
Q ss_pred HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCH
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~ 131 (184)
.+++.+|..+|++....+++...+|||.|.||+|||||...|-+|.||||||+||..+..|+-++|.-+.+|++|||||.
T Consensus 390 arARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ 469 (807)
T KOG0066|consen 390 ARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469 (807)
T ss_pred hHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence 45678899999998887889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
.|+..+|+.|+.+++.++..|.|++.-+.+
T Consensus 470 gFLD~VCtdIIHLD~qkLhyYrGNY~~FKK 499 (807)
T KOG0066|consen 470 GFLDSVCTDIIHLDNQKLHYYRGNYTLFKK 499 (807)
T ss_pred chHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence 999999999999999998878898765433
No 379
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.82 E-value=2.4e-19 Score=164.42 Aligned_cols=106 Identities=25% Similarity=0.350 Sum_probs=90.3
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVII 126 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii 126 (184)
+..+.++.+|+......+++.+|||||+||+.||++|+.+| +++||||||+|||+..+..+.+.|.++ +.|||+
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34578899999753234589999999999999999999999 999999999999999999999988764 679999
Q ss_pred EecCHHHHHhhcCeEEEE------eCCeEEEecCChhHHH
Q psy11928 127 VSHDERLIRDTECTLWVI------ENQTIEEIDGDFDDYR 160 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~~ 160 (184)
|||+++++. .||+++.| ++|+++. .|+.+++.
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~-~Gt~~el~ 926 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVA-TGTPEEVA 926 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEEEE-eCCHHHHH
Confidence 999999996 69999999 6888875 56655443
No 380
>KOG0054|consensus
Probab=99.81 E-value=5.2e-20 Score=171.95 Aligned_cols=147 Identities=20% Similarity=0.247 Sum_probs=111.5
Q ss_pred ccCcccCCceeEEecC-----------CeEEEEEecCCCC-CCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCC------
Q psy11928 3 AHCDLQPQQGELKKNH-----------RLRIGRFDQHSGE-HLTAEETPAEYLQRLFNLPYEKARKQLGTFGLA------ 64 (184)
Q Consensus 3 ~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------ 64 (184)
|-.+..|.+|+|.+++ |.+++.+||+|.- .-|.+.|+ +.+. ..+++++.+.|+..++.
T Consensus 1186 LFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NL-DPf~---e~sD~~IW~ALe~~~Lk~~v~~~ 1261 (1381)
T KOG0054|consen 1186 LFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL-DPFD---EYSDDEIWEALERCQLKDVVSSL 1261 (1381)
T ss_pred HHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccccc-Cccc---ccCHHHHHHHHHHhChHHHHhhC
Confidence 4567789999999874 6789999999851 11333342 1111 12344455555444432
Q ss_pred -----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 65 -----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 65 -----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
.... .--.++|-||||-++|||||+.+++||+|||.|++.|+.+-..+.+.|++. +.|||.|-|.++-+..
T Consensus 1262 p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd- 1339 (1381)
T KOG0054|consen 1262 PGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD- 1339 (1381)
T ss_pred CcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-
Confidence 2221 134789999999999999999999999999999999999999999999764 5799999999999986
Q ss_pred cCeEEEEeCCeEEEecCC
Q psy11928 138 ECTLWVIENQTIEEIDGD 155 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~ 155 (184)
||||+||++|++++++.+
T Consensus 1340 ~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1340 SDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred cCeEEEeeCCeEeecCCh
Confidence 899999999999986543
No 381
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.1e-20 Score=153.58 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=107.4
Q ss_pred ccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCC--------
Q psy11928 3 AHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFG-------- 62 (184)
Q Consensus 3 ~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~-------- 62 (184)
+...+.+.+|.|..++ ++.||.+||+.- | ...++..++... ...+.+++....+...
T Consensus 309 lfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtv--L-FNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l 385 (497)
T COG5265 309 LFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV--L-FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL 385 (497)
T ss_pred HHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccce--e-hhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC
Confidence 3456789999998764 457999999852 2 123333333221 1112222222222221
Q ss_pred ---CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 63 ---LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 63 ---l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
++..-. .+--.|||||||||+|||+++.+|+|+++||.||+||..+.+++...|++. +.|-+++.|.+.-+..
T Consensus 386 P~gy~t~Vg-erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~- 463 (497)
T COG5265 386 PEGYDTGVG-ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID- 463 (497)
T ss_pred chhhhcccc-hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-
Confidence 111111 134569999999999999999999999999999999999999999999764 6799999999999975
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+|.|+++++|+|++ .|.-.++
T Consensus 464 adeiivl~~g~i~e-rg~h~~l 484 (497)
T COG5265 464 ADEIIVLDNGRIVE-RGTHEEL 484 (497)
T ss_pred CceEEEeeCCEEEe-cCcHHHH
Confidence 79999999999987 6665443
No 382
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=5.7e-19 Score=161.66 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=87.8
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhc---CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLN---APDVIILDEPTNNLDIESIDALADAINEY---KGGVII 126 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~---~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii 126 (184)
+..++++.+|+......+++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+.+.|.++ +.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 445678899997533345899999999999999999997 59999999999999999999999998765 679999
Q ss_pred EecCHHHHHhhcCeEEEE------eCCeEEEecCChh
Q psy11928 127 VSHDERLIRDTECTLWVI------ENQTIEEIDGDFD 157 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~ 157 (184)
+||+++++. .||++++| ++|+++. .|+.+
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~-~G~~~ 921 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIVA-SGTPE 921 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEEEE-eCCHH
Confidence 999999996 69999999 6888874 45543
No 383
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=3.8e-19 Score=142.05 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=78.6
Q ss_pred HHHHHHHHhhCCCCc-------------------ccccccccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCH
Q psy11928 51 YEKARKQLGTFGLAG-------------------HAHTIKMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDI 107 (184)
Q Consensus 51 ~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~ 107 (184)
.+++.++++.+|+.. ...+.++.+||+|||||++||++++ .+|+++|+||||++||+
T Consensus 124 ~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~ 203 (251)
T cd03273 124 QQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDL 203 (251)
T ss_pred HHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCH
Confidence 467788899999861 1122478999999999999999998 57899999999999999
Q ss_pred HHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928 108 ESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIE 145 (184)
Q Consensus 108 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~ 145 (184)
..+.++.+.+.+. +.|+|++||+.+..+ .||+++-++
T Consensus 204 ~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 204 SHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 9999999999764 568999999966665 699987654
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=7.4e-19 Score=167.86 Aligned_cols=102 Identities=24% Similarity=0.343 Sum_probs=87.0
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHh---cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTL---NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH 129 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~---~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH 129 (184)
+.++.+|+......+++.+|||||+||++||++|+ .+|+++||||||+|||+.++..+.+.|.++ +.|||+|||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 47888999764223589999999999999999997 699999999999999999999999988654 679999999
Q ss_pred CHHHHHhhcCeEEEEe------CCeEEEecCChhHH
Q psy11928 130 DERLIRDTECTLWVIE------NQTIEEIDGDFDDY 159 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~------~g~i~~~~~~~~~~ 159 (184)
+++++ ..||++++|. +|+++. .++++++
T Consensus 871 dl~~i-~~aDrVi~L~p~gg~~~G~iv~-~Gtpeel 904 (1809)
T PRK00635 871 NMHVV-KVADYVLELGPEGGNLGGYLLA-SCSPEEL 904 (1809)
T ss_pred CHHHH-HhCCEEEEEccCCCCCCCEEEE-eCCHHHH
Confidence 99999 7899999996 577764 5665554
No 385
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=3.1e-19 Score=138.03 Aligned_cols=92 Identities=20% Similarity=0.164 Sum_probs=77.2
Q ss_pred HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-----C-
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEY-----K- 121 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----~- 121 (184)
..+.++++. ..... +++++||+|||||++||+|+ +.+|+++||||||++||+..+..+.+.|.+. +
T Consensus 91 ~~~~~~l~~---~~~~~-~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~ 166 (198)
T cd03276 91 DMARSFLTS---NKAAV-RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR 166 (198)
T ss_pred HHHHHHhcc---ccccC-CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence 456677766 43443 58999999999999999999 5899999999999999999999999888653 2
Q ss_pred cEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 122 GGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 122 ~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
.|||++||+++.+... |+|.++..++
T Consensus 167 ~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 167 QFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred EEEEEECCcccccccc-cceeEEEecC
Confidence 4899999999999875 8998887653
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.79 E-value=1e-18 Score=147.66 Aligned_cols=150 Identities=23% Similarity=0.286 Sum_probs=119.0
Q ss_pred cccCcccCCceeEEecCC-------------eEEEEEecCCC-CCCCccCCHHHHHHHh-c--------C-CC----HHH
Q psy11928 2 YAHCDLQPQQGELKKNHR-------------LRIGRFDQHSG-EHLTAEETPAEYLQRL-F--------N-LP----YEK 53 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~-------------~~ig~v~q~~~-~~l~~~~~~~~~~~~~-~--------~-~~----~~~ 53 (184)
.|+|+.+|.+|+|.+++. ..+||+|.+.. ..+...+++.+++... + + .. ...
T Consensus 303 aisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~ 382 (501)
T COG3845 303 AISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF 382 (501)
T ss_pred HHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHH
Confidence 589999999999987642 36999999863 3344556665554321 1 1 11 133
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecC
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHD 130 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd 130 (184)
+.++++.|++-..--..++.+||||.+||+-+||-|..+|++|++-+||.|||.-+.+.+.+.|.+ .|.+|+++|-|
T Consensus 383 a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d 462 (501)
T COG3845 383 ARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED 462 (501)
T ss_pred HHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh
Confidence 567889998852222247899999999999999999999999999999999999999999988854 47899999999
Q ss_pred HHHHHhhcCeEEEEeCCeEEE
Q psy11928 131 ERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~g~i~~ 151 (184)
++++..+||||.+|.+|+++.
T Consensus 463 LDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 463 LDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred HHHHHHhhheeeeeeCCceec
Confidence 999999999999999999864
No 387
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=7.5e-19 Score=167.83 Aligned_cols=101 Identities=26% Similarity=0.321 Sum_probs=85.3
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~ 131 (184)
.|..+|++....++++.+|||||+|||.||++|+.+| ++++|||||+|||+..+..+.+.|+++ |.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4667888754224589999999999999999999999 899999999999999999999888754 67999999999
Q ss_pred HHHHhhcCeEEEEe------CCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVIE------NQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l~------~g~i~~~~~~~~~~ 159 (184)
+. ...||++++|. +|+++. .++.+++
T Consensus 539 ~v-i~~aDrVi~L~pGag~~gG~Iv~-~G~~~ei 570 (1809)
T PRK00635 539 QM-ISLADRIIDIGPGAGIFGGEVLF-NGSPREF 570 (1809)
T ss_pred HH-HHhCCEEEEEcCCcccCCCEEEE-ecCHHHH
Confidence 95 47899999996 667753 5666655
No 388
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=1.5e-18 Score=137.72 Aligned_cols=75 Identities=27% Similarity=0.345 Sum_probs=65.3
Q ss_pred ccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEE
Q psy11928 70 IKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
+++.+||||||||++|||+++. +|+++|+||||++||+.++..+.+.+.+. +.+||++||+.+ +..+||++++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~ 232 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYG 232 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEE
Confidence 4789999999999999999973 58999999999999999999999999876 457777777755 5679999988
Q ss_pred Ee
Q psy11928 144 IE 145 (184)
Q Consensus 144 l~ 145 (184)
+.
T Consensus 233 l~ 234 (243)
T cd03272 233 VK 234 (243)
T ss_pred EE
Confidence 75
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=1e-18 Score=139.41 Aligned_cols=96 Identities=25% Similarity=0.283 Sum_probs=78.2
Q ss_pred CHHHHHHHHhhCCCCccc---------------------ccccccCCChhHHHHHHHHHHHhcC----CCEEEeeCCCCC
Q psy11928 50 PYEKARKQLGTFGLAGHA---------------------HTIKMKDLSGGQKARVALAELTLNA----PDVIILDEPTNN 104 (184)
Q Consensus 50 ~~~~~~~~l~~~~l~~~~---------------------~~~~~~~LSgG~kqrv~laral~~~----p~illlDEPt~~ 104 (184)
..+.+.++++.+|+..+. .++++.+||+|||||++||++++.+ |+++|+||||++
T Consensus 110 s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~ 189 (247)
T cd03275 110 SLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAA 189 (247)
T ss_pred cHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEeccccc
Confidence 345566778888874220 1124599999999999999999864 899999999999
Q ss_pred CCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 105 LDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 105 LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
||+..+..+.+.+.+. +.+||+|||+.+++ ..||+++++..
T Consensus 190 LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 190 LDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred CCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 9999999999998875 56999999998876 57999987753
No 390
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.78 E-value=5.3e-19 Score=138.06 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=76.1
Q ss_pred HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEe
Q psy11928 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVS 128 (184)
Q Consensus 55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivs 128 (184)
.++++.+++.+..+ +++.+||+|||||++||+|++. +|+++++||||+|||+.++..+.+.+.+. +.|+|++|
T Consensus 109 ~~~~~~~~L~~~~~-~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs 187 (212)
T cd03274 109 GEVEQIAQMPKKSW-KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS 187 (212)
T ss_pred CcEEEeeccccccc-cchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 34556777866554 4789999999999999999974 58999999999999999999999999876 46999999
Q ss_pred cCHHHHHhhcCeEEEEeC
Q psy11928 129 HDERLIRDTECTLWVIEN 146 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~ 146 (184)
|+. ++..+||++++|..
T Consensus 188 ~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 188 LRN-NMFELADRLVGIYK 204 (212)
T ss_pred CcH-HHHHhCCEEEEEEe
Confidence 995 55678999998853
No 391
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=2.1e-19 Score=138.09 Aligned_cols=132 Identities=20% Similarity=0.276 Sum_probs=106.4
Q ss_pred eEEEEEecCCCCCCCccCCHHHH-HH------------HhcCCCHHHHHHHHhhCCCCcc--cccccccCCChhHHHHHH
Q psy11928 20 LRIGRFDQHSGEHLTAEETPAEY-LQ------------RLFNLPYEKARKQLGTFGLAGH--AHTIKMKDLSGGQKARVA 84 (184)
Q Consensus 20 ~~ig~v~q~~~~~l~~~~~~~~~-~~------------~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~ 84 (184)
+.|+++||+|..-+.+.+.+..- +. ..++..+.++-++|.++|+.+. ....++.+|-.||-|||+
T Consensus 89 ~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVM 168 (330)
T COG4170 89 HNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVM 168 (330)
T ss_pred cchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeee
Confidence 46999999986445555443221 11 1122345678899999999753 334589999999999999
Q ss_pred HHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928 85 LAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 85 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~ 151 (184)
||.|++++|++||.|||||++++.+..++..++.+. +.||+++|||+..+.+.||++-++..|.-++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 999999999999999999999999999999998764 4689999999999999999999999887654
No 392
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.78 E-value=3.2e-20 Score=138.73 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=116.6
Q ss_pred ccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCH---HHHHHHHhhCCCCcccc
Q psy11928 3 AHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPY---EKARKQLGTFGLAGHAH 68 (184)
Q Consensus 3 ~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~ 68 (184)
++|++ |.+|+|.+.+ .++-+|+.|+..+.+ .+-++.|+... ...+ ..+.++...+++++...
T Consensus 45 lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f--~mpV~~YL~L~-qP~~~~a~~i~~i~~~L~l~DKL~ 120 (248)
T COG4138 45 MAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPF--AMPVWHYLTLH-QPDKTRTELLNDVAGALALDDKLG 120 (248)
T ss_pred HhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcc--hhhhhhhhhhc-CchHHHHHHHHHHHhhhcccchhh
Confidence 56764 7799998764 234578877654322 23344444332 2222 34677888999988776
Q ss_pred cccccCCChhHHHHHHHHHHHhc-----C--CCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928 69 TIKMKDLSGGQKARVALAELTLN-----A--PDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~-----~--p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 138 (184)
+.+++|||||-|||-+|...++ + .+++|+|||.|+||+.....+-.++.++ |.+|||++||++--.+-+
T Consensus 121 -Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA 199 (248)
T COG4138 121 -RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA 199 (248)
T ss_pred -hhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHH
Confidence 5899999999999999987643 3 3799999999999999888888777765 679999999999999999
Q ss_pred CeEEEEeCCeEEEecCCh-hHHHHHHHHHh
Q psy11928 139 CTLWVIENQTIEEIDGDF-DDYRKELLEAL 167 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~-~~~~~~~~~~~ 167 (184)
+++|+++.|++.. .|.. +....+++...
T Consensus 200 ~~~wLL~rG~l~~-~G~~~eVlt~~vL~q~ 228 (248)
T COG4138 200 HRAWLLKRGKLLA-SGRREEVLTPPVLAQA 228 (248)
T ss_pred HHHHHHhcCeEEe-ecchhhhcChHHHHHH
Confidence 9999999999865 4544 33445554444
No 393
>KOG0056|consensus
Probab=99.78 E-value=1.6e-19 Score=152.59 Aligned_cols=150 Identities=27% Similarity=0.326 Sum_probs=106.2
Q ss_pred CcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHH-------hhCCCCc
Q psy11928 5 CDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQL-------GTFGLAG 65 (184)
Q Consensus 5 G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l-------~~~~l~~ 65 (184)
...+..+|.|.+++ |..||.|||+.- + ...|+..++... ...+.+++.+.. ..+++.+
T Consensus 586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtv--L-FNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPe 662 (790)
T KOG0056|consen 586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTV--L-FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE 662 (790)
T ss_pred HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcce--e-ecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCch
Confidence 34567889998875 567999999852 2 122332222111 111122221111 1134433
Q ss_pred cccc---ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCe
Q psy11928 66 HAHT---IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 66 ~~~~---~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~ 140 (184)
-... .+--.|||||||||+|||+++..|.+++|||.||+||..+.+.+...+.+. +.|-|+|.|.++-+-. +|.
T Consensus 663 gY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ 741 (790)
T KOG0056|consen 663 GYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADL 741 (790)
T ss_pred hhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccE
Confidence 2221 134579999999999999999999999999999999999999999999886 5799999999999975 799
Q ss_pred EEEEeCCeEEEecCChhHH
Q psy11928 141 LWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 141 i~~l~~g~i~~~~~~~~~~ 159 (184)
|+++++|.|++ .|.-++.
T Consensus 742 ILvi~~G~IvE-rG~HeeL 759 (790)
T KOG0056|consen 742 ILVISNGRIVE-RGRHEEL 759 (790)
T ss_pred EEEEeCCeEee-cCcHHHH
Confidence 99999999987 6665543
No 394
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.74 E-value=1.4e-18 Score=126.07 Aligned_cols=93 Identities=37% Similarity=0.466 Sum_probs=72.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|..+|++|+|.+++ +..++|++|++. +....++.++. ...++.++++.+++..... +
T Consensus 30 ~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~tv~~~~------~~~~~~~~l~~l~~~~~~~-~ 100 (137)
T PF00005_consen 30 ALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQ--LFPGLTVRENE------SDERIEEVLKKLGLEDLLD-R 100 (137)
T ss_dssp HHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHC--HHTTSBHHHHH------HHHHHHHHHHHTTHGGGTG-S
T ss_pred eecccccccccccccccccccccccccccccccccccccc--ccccccccccc------ccccccccccccccccccc-c
Confidence 58999999999998753 346999999853 33444555551 1345777888888765333 2
Q ss_pred cc----cCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q psy11928 71 KM----KDLSGGQKARVALAELTLNAPDVIILDEPTN 103 (184)
Q Consensus 71 ~~----~~LSgG~kqrv~laral~~~p~illlDEPt~ 103 (184)
.+ .+||+|||||++||+|++.+|+++|||||||
T Consensus 101 ~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 101 KIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp BGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 44 9999999999999999999999999999997
No 395
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.71 E-value=7.2e-17 Score=140.78 Aligned_cols=139 Identities=25% Similarity=0.202 Sum_probs=106.6
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc---CCCHHHHHHHHhhCCCCccccc-----cccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLPYEKARKQLGTFGLAGHAHT-----IKMK 73 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~-----~~~~ 73 (184)
.|+|+-+--+|+|.......+-|+||.|+ ++.. |+.+.+.... ..+.+++.+.|..+||.+...+ +=-.
T Consensus 438 aiaGLWP~g~G~I~~P~~~~~lflpQ~PY--~p~G-tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~ 514 (604)
T COG4178 438 ALAGLWPWGSGRISMPADSALLFLPQRPY--LPQG-TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDR 514 (604)
T ss_pred HHhccCccCCCceecCCCCceEEecCCCC--CCCc-cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhh
Confidence 57898888899998766667899999986 3333 6666554221 2456778888888888642210 0125
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE--YKGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 74 ~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
.||+|||||+++||.++++|++++|||-|++||+.+...+.+.+++ .+.|||-|+|....-.- .++.+-+
T Consensus 515 vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~-h~~~l~l 586 (604)
T COG4178 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNF-HSRQLEL 586 (604)
T ss_pred hcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHH-Hhhheee
Confidence 7999999999999999999999999999999999999999999988 57899999998777654 4444333
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.71 E-value=3.2e-17 Score=128.11 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=67.3
Q ss_pred cccccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----C-cEEEEEecCHHHHHhhcC
Q psy11928 69 TIKMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEY----K-GGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~-~tiiivsHd~~~~~~~~~ 139 (184)
...+.+||+||||++.+++++ +.+|+++|+||||++||+..+..+.+.+.+. + .|+|++|||+......|+
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 347899999999998877654 5899999999999999999999999988653 3 379999999888777775
Q ss_pred --eEEEEeCCe
Q psy11928 140 --TLWVIENQT 148 (184)
Q Consensus 140 --~i~~l~~g~ 148 (184)
+++++.+|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 678888885
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.68 E-value=2.9e-16 Score=119.53 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=63.7
Q ss_pred CChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 75 LSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 75 LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
||+||+||++||++++ .+|+++++|||+++||+..+..+.+.+.+. +.++|++||+.+.+. .+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 689999999999999999999998888654 479999999998875 6899987754
No 398
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2.2e-16 Score=127.91 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=65.7
Q ss_pred cCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 73 KDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
.+|||||+||+++|++++. +|+++++||||++||+..+..+.+.+.+. +.|+|++||++... ..||+++.+.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEE
Confidence 4599999999999987654 99999999999999999999999999765 56999999999865 68999988877
Q ss_pred C
Q psy11928 147 Q 147 (184)
Q Consensus 147 g 147 (184)
|
T Consensus 248 ~ 248 (276)
T cd03241 248 E 248 (276)
T ss_pred e
Confidence 5
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.66 E-value=2.9e-16 Score=131.98 Aligned_cols=92 Identities=29% Similarity=0.380 Sum_probs=82.5
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecC
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHD 130 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd 130 (184)
..++.++++|...++ +.+++|||||-||++||.+++.+++++++|||||.||+..+-...+.++++ +++||+|.||
T Consensus 194 ~devve~l~L~nvl~-r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHD 272 (591)
T COG1245 194 FDEVVERLGLENVLD-RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272 (591)
T ss_pred HHHHHHHhcchhhhh-hhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEech
Confidence 556788999987765 589999999999999999999999999999999999999998887777765 5799999999
Q ss_pred HHHHHhhcCeEEEEeC
Q psy11928 131 ERLIRDTECTLWVIEN 146 (184)
Q Consensus 131 ~~~~~~~~~~i~~l~~ 146 (184)
+..+..++|-|.++..
T Consensus 273 LavLD~lsD~vhI~YG 288 (591)
T COG1245 273 LAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHhhheeEEEec
Confidence 9999999999888754
No 400
>KOG0065|consensus
Probab=99.65 E-value=1.1e-16 Score=147.85 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=104.7
Q ss_pred CeEEEEEecCCC--CCCCccCCHHHH--HHHhcCCCH----HHHHHHHhhCCCCcccccccccC----CChhHHHHHHHH
Q psy11928 19 RLRIGRFDQHSG--EHLTAEETPAEY--LQRLFNLPY----EKARKQLGTFGLAGHAHTIKMKD----LSGGQKARVALA 86 (184)
Q Consensus 19 ~~~ig~v~q~~~--~~l~~~~~~~~~--~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~----LSgG~kqrv~la 86 (184)
++.+|||.|+.. +.+|+++++..- ++.....+. +.++++++.+++++..+. -++. ||.+||+|+.||
T Consensus 863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~da-iVG~~G~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADA-LVGLPGSGLSTEQRKRLTIG 941 (1391)
T ss_pred ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhh-hccCCCCCCCHHHhceeeEE
Confidence 467999999864 455665554221 111122221 347888999999865543 4555 999999999999
Q ss_pred HHHhcCC-CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH-HHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 87 ELTLNAP-DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL-IRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 87 ral~~~p-~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~-~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
--|+.+| .||+|||||||||.++...+++.+++. |.||+-+-|.+.- +.+.-|++++|++|.-..|.|+..+-.+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 9999999 999999999999999999998888764 8899999998653 4455689999987654346666544444
Q ss_pred H
Q psy11928 162 E 162 (184)
Q Consensus 162 ~ 162 (184)
+
T Consensus 1022 ~ 1022 (1391)
T KOG0065|consen 1022 K 1022 (1391)
T ss_pred H
Confidence 3
No 401
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=5.1e-16 Score=145.36 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=72.1
Q ss_pred cccccCCChhHHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928 69 TIKMKDLSGGQKARVALAELTLN----------APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR 135 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~----------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~ 135 (184)
.+++.+|||||++||+||+||+. +|++||+||||++||+.++..+++.|.++ |.+|+||||+.++..
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~ 1024 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRE 1024 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHH
Confidence 35789999999999999999986 79999999999999999999999888654 679999999999999
Q ss_pred hhcCeEEEEeCC
Q psy11928 136 DTECTLWVIENQ 147 (184)
Q Consensus 136 ~~~~~i~~l~~g 147 (184)
.+|++|.|++.+
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 999999999754
No 402
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.62 E-value=1.9e-15 Score=133.41 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=67.5
Q ss_pred cCCChhHHHHHHHHHHHhcC----CCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 73 KDLSGGQKARVALAELTLNA----PDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
..|||||+||++||++++.. |+++|+||||+|||+..+..+.+.|.+. +.+||+|||++..+. .||+++++.+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 57999999999999999885 6999999999999999999999999865 679999999999886 7999999987
Q ss_pred C
Q psy11928 147 Q 147 (184)
Q Consensus 147 g 147 (184)
|
T Consensus 518 ~ 518 (563)
T TIGR00634 518 E 518 (563)
T ss_pred c
Confidence 5
No 403
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.61 E-value=2.5e-15 Score=132.34 Aligned_cols=78 Identities=27% Similarity=0.343 Sum_probs=68.3
Q ss_pred cccCCChhHHHHHHHHHHHh----------cCCCEEEeeCCC-CCCCHHHHHHHHHHHHhc-CcEEEEEecCHHHHHhhc
Q psy11928 71 KMKDLSGGQKARVALAELTL----------NAPDVIILDEPT-NNLDIESIDALADAINEY-KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~----------~~p~illlDEPt-~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~~~~~ 138 (184)
++.+|||||+||++||++++ .+|+++|||||| ++||+.++..+.+.|.+. +.|||+|||+..... .|
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~-~~ 543 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQ-KF 543 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchh-hh
Confidence 57899999999999999987 599999999998 789999999999999886 569999999977664 67
Q ss_pred CeEEEEeC-CeE
Q psy11928 139 CTLWVIEN-QTI 149 (184)
Q Consensus 139 ~~i~~l~~-g~i 149 (184)
++++++.+ |+.
T Consensus 544 d~~~~l~~~~~~ 555 (562)
T PHA02562 544 DRHLKMEKVGRF 555 (562)
T ss_pred hcEEEEEEECCe
Confidence 99888875 544
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.59 E-value=6.5e-15 Score=110.35 Aligned_cols=74 Identities=35% Similarity=0.345 Sum_probs=64.6
Q ss_pred ccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 72 MKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
..+||+||+||++++++++. +|+++|+|||++|+|+..+..+.+.+.++ +.++|++||+.+... .+|+++.|
T Consensus 75 ~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l 153 (162)
T cd03227 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHI 153 (162)
T ss_pred eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEE
Confidence 35799999999999999986 78999999999999999999888877653 469999999999987 47888877
Q ss_pred eC
Q psy11928 145 EN 146 (184)
Q Consensus 145 ~~ 146 (184)
..
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 54
No 405
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.58 E-value=1.6e-15 Score=117.34 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=73.7
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHH---hcCcEEEEEecCH
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD-AIN---EYKGGVIIVSHDE 131 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~---~~~~tiiivsHd~ 131 (184)
+++..++..+... ...+++|+||+|++.+++++ .+|+++++||||+|||+..+..+.. .+. +.+.++|++||+.
T Consensus 74 ~~~~~lg~~~~l~-~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~ 151 (200)
T cd03280 74 NIFADIGDEQSIE-QSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG 151 (200)
T ss_pred EEEEecCchhhhh-cCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH
Confidence 4445556654444 36899999999999999884 8999999999999999999887753 343 3478999999985
Q ss_pred HHHHhhcCeEEEEeCCeEE
Q psy11928 132 RLIRDTECTLWVIENQTIE 150 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i~ 150 (184)
.+...|++++.+++|++.
T Consensus 152 -~l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 152 -ELKAYAYKREGVENASME 169 (200)
T ss_pred -HHHHHHhcCCCeEEEEEE
Confidence 455789999999999885
No 406
>PRK10869 recombination and repair protein; Provisional
Probab=99.57 E-value=1.4e-14 Score=127.48 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=66.0
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 74 DLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 74 ~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
.+||||+||++||++++. +|+++|+|||++|||..+...+.+.+.+. +.+||+|||++..+ ..||+++.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 589999999999999997 58999999999999999999999999875 46999999999987 589999888764
No 407
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.54 E-value=2.4e-14 Score=134.04 Aligned_cols=77 Identities=27% Similarity=0.306 Sum_probs=70.3
Q ss_pred ccccCCChhHHHHHHHHHHHhc--------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928 70 IKMKDLSGGQKARVALAELTLN--------APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~--------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 138 (184)
+++.+|||||+++++||+||+. +|+++|+||||++||+.+...+++.|... |.||+||||..++..++.
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 5899999999999999999996 89999999999999999999999888653 679999999999999998
Q ss_pred CeEEEEeC
Q psy11928 139 CTLWVIEN 146 (184)
Q Consensus 139 ~~i~~l~~ 146 (184)
.+|.|-+.
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 88887765
No 408
>PRK03918 chromosome segregation protein; Provisional
Probab=99.54 E-value=2.1e-14 Score=132.37 Aligned_cols=75 Identities=37% Similarity=0.454 Sum_probs=65.2
Q ss_pred ccccCCChhHHHH------HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 70 IKMKDLSGGQKAR------VALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 70 ~~~~~LSgG~kqr------v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
+++..|||||+++ ++||++++.+|+++|+||||++||+..+..+.+.|..+ +.+||+||||.++. ..|++
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d~ 862 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAADY 862 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCCe
Confidence 4789999999995 55566788999999999999999999999999988654 46999999999865 58999
Q ss_pred EEEEe
Q psy11928 141 LWVIE 145 (184)
Q Consensus 141 i~~l~ 145 (184)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99987
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=2.1e-14 Score=116.00 Aligned_cols=78 Identities=23% Similarity=0.223 Sum_probs=67.8
Q ss_pred cccCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhc---
Q psy11928 71 KMKDLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE--- 138 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~--- 138 (184)
..+.+|+||+|++++|++++ .+|+++|+||||++||+..+..+.+.+.+.+ .++++||+...+..+|
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~ 258 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRR 258 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccC
Confidence 35668999999999999985 7999999999999999999999999998876 5677777777777777
Q ss_pred CeEEEEeCCeE
Q psy11928 139 CTLWVIENQTI 149 (184)
Q Consensus 139 ~~i~~l~~g~i 149 (184)
++++.+++|++
T Consensus 259 ~~i~~l~~g~i 269 (270)
T cd03242 259 AQIFRVDAGTL 269 (270)
T ss_pred ccEEEEeCcEE
Confidence 67888999875
No 410
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=1.9e-14 Score=137.39 Aligned_cols=69 Identities=39% Similarity=0.481 Sum_probs=62.4
Q ss_pred cccCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--------CcEEEEEecCHHHHHh
Q psy11928 71 KMKDLSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--------KGGVIIVSHDERLIRD 136 (184)
Q Consensus 71 ~~~~LSgG~kq------rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--------~~tiiivsHd~~~~~~ 136 (184)
..+.|||||+| |++||++++.+|++++|||||+|||+.+...+.+.|... +.+||+||||++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 46899999999 999999999999999999999999999999888777543 5699999999999998
Q ss_pred hcC
Q psy11928 137 TEC 139 (184)
Q Consensus 137 ~~~ 139 (184)
+|.
T Consensus 1276 ~~~ 1278 (1311)
T TIGR00606 1276 LGR 1278 (1311)
T ss_pred Hhh
Confidence 874
No 411
>PRK01156 chromosome segregation protein; Provisional
Probab=99.52 E-value=5.1e-14 Score=130.25 Aligned_cols=74 Identities=32% Similarity=0.492 Sum_probs=64.9
Q ss_pred cccCCChhHHHHHHH------HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cC--cEEEEEecCHHHHHhhc
Q psy11928 71 KMKDLSGGQKARVAL------AELTLNAPDVIILDEPTNNLDIESIDALADAINE----YK--GGVIIVSHDERLIRDTE 138 (184)
Q Consensus 71 ~~~~LSgG~kqrv~l------aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~--~tiiivsHd~~~~~~~~ 138 (184)
++..|||||++|++| |++++.+|++++|||||++||+..+..+.+++.. .+ .+||+||||.+++ ..|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence 689999999999976 4899999999999999999999999999888753 22 3899999999988 489
Q ss_pred CeEEEEe
Q psy11928 139 CTLWVIE 145 (184)
Q Consensus 139 ~~i~~l~ 145 (184)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9998886
No 412
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.51 E-value=1.5e-13 Score=122.18 Aligned_cols=107 Identities=26% Similarity=0.360 Sum_probs=87.6
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVII 126 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii 126 (184)
+..+.|..+||.....-++...|||||.|||-||.-|..+. -+++|||||.||-..-.+.|++.|.++ |.|||+
T Consensus 801 rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViV 880 (935)
T COG0178 801 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIV 880 (935)
T ss_pred HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34456778899865555688999999999999999998776 999999999999999999999888765 789999
Q ss_pred EecCHHHHHhhcCeEEEEe------CCeEEEecCChhHHHH
Q psy11928 127 VSHDERLIRDTECTLWVIE------NQTIEEIDGDFDDYRK 161 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l~------~g~i~~~~~~~~~~~~ 161 (184)
|.|+++.+. .||.|+-|- .|+|+. .|++++..+
T Consensus 881 IEHNLdVIk-~AD~IIDLGPeGG~~GG~iva-~GTPeeva~ 919 (935)
T COG0178 881 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVA-SGTPEEVAK 919 (935)
T ss_pred EecccceEe-ecCEEEEcCCCCCCCCceEEE-ecCHHHHHh
Confidence 999999996 578777662 356664 677766544
No 413
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.51 E-value=5.7e-15 Score=122.51 Aligned_cols=146 Identities=23% Similarity=0.269 Sum_probs=99.8
Q ss_pred CcccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHH-HH------Hhc---C-CCHHHHHHHHhhCCCCcc---
Q psy11928 1 MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEY-LQ------RLF---N-LPYEKARKQLGTFGLAGH--- 66 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~-~~------~~~---~-~~~~~~~~~l~~~~l~~~--- 66 (184)
|.++|+++|++|+|.+++..- ..+ ++..+..+... +. ... + .+.+.+...++++.+...
T Consensus 367 ~LLtGL~~PqsG~I~ldg~pV----~~e---~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl 439 (546)
T COG4615 367 MLLTGLYQPQSGEILLDGKPV----SAE---QLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSL 439 (546)
T ss_pred HHHhcccCCCCCceeECCccC----CCC---CHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcc
Confidence 568999999999998876320 100 00000000000 00 001 1 234556666666554321
Q ss_pred cc-cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEecCHHHHHhhcCeE
Q psy11928 67 AH-TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA----INEYKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 67 ~~-~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~----l~~~~~tiiivsHd~~~~~~~~~~i 141 (184)
.+ +-.+-.||.|||+|+++.-|++.+.||+++||=.+.=||.-++++.+. +++.|+||+.||||-.-.. .+||+
T Consensus 440 ~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrl 518 (546)
T COG4615 440 NDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRL 518 (546)
T ss_pred cCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHH
Confidence 11 113568999999999999999999999999999999999999887654 4788999999999955543 47999
Q ss_pred EEEeCCeEEEecC
Q psy11928 142 WVIENQTIEEIDG 154 (184)
Q Consensus 142 ~~l~~g~i~~~~~ 154 (184)
+.+++|++++..|
T Consensus 519 l~~~~G~~~e~tg 531 (546)
T COG4615 519 LEMRNGQLSELTG 531 (546)
T ss_pred HHHhcCceeeccc
Confidence 9999999976543
No 414
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=5.5e-14 Score=110.52 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=75.0
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHH--hcCCCEEEeeCC---CCCCCHHHHHHHH-HHHHh-cCcEEEE
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELT--LNAPDVIILDEP---TNNLDIESIDALA-DAINE-YKGGVII 126 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral--~~~p~illlDEP---t~~LD~~~~~~l~-~~l~~-~~~tiii 126 (184)
+.+++..+++.+. ..+.+|.|+++++.+++++ +.+|+++|+||| |++||+.+..+.. +.+.+ .+.++|+
T Consensus 73 ~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vli 148 (222)
T cd03285 73 VDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLF 148 (222)
T ss_pred cceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3456777777642 3578999999999999999 899999999999 9999999886544 66654 4789999
Q ss_pred EecCHHHHHhhcCeEEEEeCCeEE
Q psy11928 127 VSHDERLIRDTECTLWVIENQTIE 150 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l~~g~i~ 150 (184)
+||+ .++..+|+++..+++|++.
T Consensus 149 sTH~-~el~~~~~~~~~i~~g~~~ 171 (222)
T cd03285 149 ATHF-HELTALADEVPNVKNLHVT 171 (222)
T ss_pred Eech-HHHHHHhhcCCCeEEEEEE
Confidence 9996 6667799998888888874
No 415
>KOG0060|consensus
Probab=99.49 E-value=3.4e-13 Score=116.25 Aligned_cols=139 Identities=22% Similarity=0.146 Sum_probs=100.5
Q ss_pred cccCcccCCceeEEecCC---eEEEEEecCCCCCCCccCCHHHHHHH--------hcCCCHHHHHHHHhhCCCCc-----
Q psy11928 2 YAHCDLQPQQGELKKNHR---LRIGRFDQHSGEHLTAEETPAEYLQR--------LFNLPYEKARKQLGTFGLAG----- 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~---~~ig~v~q~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~~----- 65 (184)
+++|+-+-.+|++....+ ..+-|+||.|+ ++.. |+.+-+-. ....+.+++.++|+.+++.+
T Consensus 480 vlggLWp~~~G~l~k~~~~~~~~lfflPQrPY--mt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ 556 (659)
T KOG0060|consen 480 VLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPY--MTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE 556 (659)
T ss_pred HHhcccccCCCeEEecccCCCCceEEecCCCC--cccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh
Confidence 456665558999975433 45999999985 4433 33331110 01123445555555554432
Q ss_pred -------ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhc
Q psy11928 66 -------HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 66 -------~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~ 138 (184)
+.+ =...||+||+||+++||.+.++|++-+|||-||++|......+.+.+++.+.|.|-|+|....-+ .-
T Consensus 557 ggld~~~~~d--W~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fH 633 (659)
T KOG0060|consen 557 GGLDQQVDWD--WMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FH 633 (659)
T ss_pred CCCCchhhcc--HHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hh
Confidence 111 24689999999999999999999999999999999999999999999999999999999988875 45
Q ss_pred CeEEEEeC
Q psy11928 139 CTLWVIEN 146 (184)
Q Consensus 139 ~~i~~l~~ 146 (184)
+.++-|..
T Consensus 634 d~~L~~~g 641 (659)
T KOG0060|consen 634 DYVLRMDG 641 (659)
T ss_pred hEEEEecC
Confidence 66666654
No 416
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.47 E-value=1e-13 Score=130.45 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=65.5
Q ss_pred ccccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEE
Q psy11928 70 IKMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
.++.+|||||+++++||++++ .+|+++||||||++||+..+..+.++|... +.++|||||++.++. .||+++.
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~-~~d~~~~ 1163 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTME-VADQLYG 1163 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHH-HhhhHee
Confidence 478999999999999999984 677999999999999999999999999765 468999999999874 6999865
Q ss_pred E
Q psy11928 144 I 144 (184)
Q Consensus 144 l 144 (184)
+
T Consensus 1164 ~ 1164 (1179)
T TIGR02168 1164 V 1164 (1179)
T ss_pred e
Confidence 4
No 417
>PRK00064 recF recombination protein F; Reviewed
Probab=99.44 E-value=4.2e-13 Score=112.59 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=70.3
Q ss_pred cccCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhc--C
Q psy11928 71 KMKDLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE--C 139 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~--~ 139 (184)
....+|.||++++.+|+.++ .+|+|+|+|||+++||+..+..+.+.+.+.+..++++||+.+.+...+ +
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccC
Confidence 45789999999999999986 799999999999999999999999999876778999999988876654 4
Q ss_pred eEEEEeCCeE
Q psy11928 140 TLWVIENQTI 149 (184)
Q Consensus 140 ~i~~l~~g~i 149 (184)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 7889999976
No 418
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=109.20 Aligned_cols=141 Identities=24% Similarity=0.265 Sum_probs=107.2
Q ss_pred ccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcc-cccccccCCChhHHHHHHH
Q psy11928 7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH-AHTIKMKDLSGGQKARVAL 85 (184)
Q Consensus 7 ~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgG~kqrv~l 85 (184)
++|++|.|.+-...--+.+|....+.+. ..|+.+.+....+ +...+.++|.+.|+.+. +-.+++++||.|||.|+.|
T Consensus 441 y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~tilehl~s~tG-D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KL 518 (593)
T COG2401 441 YRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTILEHLRSKTG-DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKL 518 (593)
T ss_pred cCCCCCceeccccchhhccCcccccccC-chhHHHHHhhccC-chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHH
Confidence 6899999986544434456665444444 5566666554332 22446789999999752 3345789999999999999
Q ss_pred HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhh-cCeEEEEeCCeE
Q psy11928 86 AELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDT-ECTLWVIENQTI 149 (184)
Q Consensus 86 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~-~~~i~~l~~g~i 149 (184)
|+++..+|.+++.||=.++||+.+...+..-|. +.+.|+++|||..++...+ -|.++.+.-|++
T Consensus 519 Akllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 519 AKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred HHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 999999999999999999999999877776664 4688999999999999988 477776665654
No 419
>KOG2355|consensus
Probab=99.42 E-value=8.6e-13 Score=101.35 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=93.0
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH
Q psy11928 36 EETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD 115 (184)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 115 (184)
..++...+....+...++-+.+++.+.++- .+ +...+|-|||+||+|+..|+..=++|||||-|-.||..++..+++
T Consensus 112 D~sae~mifgV~g~dp~Rre~LI~iLDIdl-~W--RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLe 188 (291)
T KOG2355|consen 112 DISAEHMIFGVGGDDPERREKLIDILDIDL-RW--RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLE 188 (291)
T ss_pred cccHHHHHhhccCCChhHhhhhhhheeccc-eE--EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHH
Confidence 344444444333444556667777777753 33 578999999999999999999999999999999999999999999
Q ss_pred HHHh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928 116 AINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 116 ~l~~----~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~ 151 (184)
++++ .+.||++.||..+-++...++++.+++|+++.
T Consensus 189 FlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 189 FLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 9975 36899999999999999999999999999864
No 420
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.38 E-value=1.2e-12 Score=123.40 Aligned_cols=74 Identities=23% Similarity=0.270 Sum_probs=65.8
Q ss_pred cccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 71 KMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
++..||||||++++||++|+. +|+++|||||+++||+..+..+.++|.++ +.++|+|||+...+ ..||+++.+
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~~~ 1149 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAIGV 1149 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeEeE
Confidence 578999999999999999984 78999999999999999999999999876 35899999999866 689998766
Q ss_pred e
Q psy11928 145 E 145 (184)
Q Consensus 145 ~ 145 (184)
.
T Consensus 1150 ~ 1150 (1164)
T TIGR02169 1150 T 1150 (1164)
T ss_pred E
Confidence 4
No 421
>PRK02224 chromosome segregation protein; Provisional
Probab=99.35 E-value=2.4e-12 Score=118.98 Aligned_cols=76 Identities=34% Similarity=0.538 Sum_probs=65.0
Q ss_pred cccCCChhHHH------HHHHHHHHhcC-----C-CEEEeeCCCCCCCHHHHHHHHHHHHhc---Cc-EEEEEecCHHHH
Q psy11928 71 KMKDLSGGQKA------RVALAELTLNA-----P-DVIILDEPTNNLDIESIDALADAINEY---KG-GVIIVSHDERLI 134 (184)
Q Consensus 71 ~~~~LSgG~kq------rv~laral~~~-----p-~illlDEPt~~LD~~~~~~l~~~l~~~---~~-tiiivsHd~~~~ 134 (184)
++..||||||+ |++++++++.+ | +++|+||||++||+..+..+.++|..+ +. +||+||||..++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 47899999999 89999988863 3 679999999999999999999888764 33 799999999998
Q ss_pred HhhcCeEEEEeCC
Q psy11928 135 RDTECTLWVIENQ 147 (184)
Q Consensus 135 ~~~~~~i~~l~~g 147 (184)
. .||+++.+...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 6 69999988644
No 422
>KOG0064|consensus
Probab=99.32 E-value=2.8e-12 Score=109.83 Aligned_cols=128 Identities=17% Similarity=0.191 Sum_probs=96.8
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCcc---------CCHHHHHHHhcCCCHHHHHHHHhhCCCC--------
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAE---------ETPAEYLQRLFNLPYEKARKQLGTFGLA-------- 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------- 64 (184)
+|.|+-+...|........++-|+||.|+ ++.. ++..++... +..+.....+|..+.++
T Consensus 527 ILggLWPvy~g~L~~P~~~~mFYIPQRPY--ms~gtlRDQIIYPdS~e~~~~k--g~~d~dL~~iL~~v~L~~i~qr~~g 602 (728)
T KOG0064|consen 527 ILGGLWPVYNGLLSIPRPNNIFYIPQRPY--MSGGTLRDQIIYPDSSEQMKRK--GYTDQDLEAILDIVHLEHILQREGG 602 (728)
T ss_pred HHhccCcccCCeeecCCCcceEeccCCCc--cCcCcccceeecCCcHHHHHhc--CCCHHHHHHHHHHhhHHHHHHhccC
Confidence 67788777889888877788999999985 3211 222222222 33444455554444332
Q ss_pred --cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Q psy11928 65 --GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIR 135 (184)
Q Consensus 65 --~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 135 (184)
...+. -..||||+|||+++||.+.++|+.-+|||-||+..+.....+.+..+.+|.+.|-|||.+....
T Consensus 603 ~da~~dW--kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk 673 (728)
T KOG0064|consen 603 WDAVRDW--KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK 673 (728)
T ss_pred hhhhccH--HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHH
Confidence 22222 2579999999999999999999999999999999999999999999999999999999988875
No 423
>KOG0063|consensus
Probab=99.30 E-value=3.9e-12 Score=106.71 Aligned_cols=140 Identities=22% Similarity=0.224 Sum_probs=101.9
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 78 (184)
.++|.++|++|.=. ...+++|-||...+..++ ++...+... ......-+.+.++-+.++...+ +.+..||||
T Consensus 386 mlag~~~pd~~~e~--p~lnVSykpqkispK~~~--tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~d-qevq~lSgg 460 (592)
T KOG0063|consen 386 MLAGRLKPDEGGEI--PVLNVSYKPQKISPKREG--TVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIID-QEVQGLSGG 460 (592)
T ss_pred HHhcCCCCCccCcc--cccceeccccccCccccc--hHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHh-HHhhcCCch
Confidence 36788888876221 134789999976543222 333322211 1122344566777887876665 479999999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
++|||++|..|=..+++++.|||.+.||.+.+..--..+++ .++|-.+|.||.--+..++||+++.+.
T Consensus 461 elQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 461 ELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred hhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 99999999999999999999999999999988655544444 478999999999988889999988754
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.26 E-value=1.7e-11 Score=94.95 Aligned_cols=91 Identities=11% Similarity=0.018 Sum_probs=66.4
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH----HHHhcCcEEEEEecCHH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD----AINEYKGGVIIVSHDER 132 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~----~l~~~~~tiiivsHd~~ 132 (184)
++..++..+... ...+.+|++++| +..+.+++.+|+++|+||||+|+|+.....+.. .+.+.+.++|++||+.+
T Consensus 75 i~~~~~~~d~i~-~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~ 152 (202)
T cd03243 75 IFTRIGAEDSIS-DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHE 152 (202)
T ss_pred EEEEecCccccc-CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHH
Confidence 344445444443 357788888776 666678889999999999999999987766543 33345789999999998
Q ss_pred HHHhhcCeEEEEeCCeEE
Q psy11928 133 LIRDTECTLWVIENQTIE 150 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~ 150 (184)
++. .++++..++.+++.
T Consensus 153 ~~~-~~~~~~~l~~~~~~ 169 (202)
T cd03243 153 LAD-LPEQVPGVKNLHME 169 (202)
T ss_pred HHH-HhhcCCCeEEEEEE
Confidence 877 46676667777664
No 425
>KOG0065|consensus
Probab=99.26 E-value=2.1e-11 Score=113.47 Aligned_cols=138 Identities=19% Similarity=0.254 Sum_probs=103.2
Q ss_pred CeEEEEEecCCC--CCCCccCCHHHHHHHhc-------CCCHHH-----HHHHHhhCCCCccccc----ccccCCChhHH
Q psy11928 19 RLRIGRFDQHSG--EHLTAEETPAEYLQRLF-------NLPYEK-----ARKQLGTFGLAGHAHT----IKMKDLSGGQK 80 (184)
Q Consensus 19 ~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~-------~~~~~~-----~~~~l~~~~l~~~~~~----~~~~~LSgG~k 80 (184)
+..++|++|+.. +.+|+.+|+ ++...-. +.++.+ .+.+++.+|++.-.+. .-....|||||
T Consensus 188 ~~~~aY~~e~DvH~p~lTVreTl-dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGer 266 (1391)
T KOG0065|consen 188 KKTVAYNSEQDVHFPELTVRETL-DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGER 266 (1391)
T ss_pred CceEEeccccccccceeEEeehh-hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCccc
Confidence 456999999753 678888885 3433211 122222 3367899999753332 24678999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecC-HHHHHhhcCeEEEEeCCeEEEecCC
Q psy11928 81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHD-ERLIRDTECTLWVIENQTIEEIDGD 155 (184)
Q Consensus 81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd-~~~~~~~~~~i~~l~~g~i~~~~~~ 155 (184)
+||+++-+++.+|+++++||+|+|||..+.-++.+.+++. +.|.+++-|. -.++..+-|.|.+|.+|.++. .|+
T Consensus 267 KRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy-~Gp 345 (1391)
T KOG0065|consen 267 KRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY-QGP 345 (1391)
T ss_pred ceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEE-ecc
Confidence 9999999999999999999999999999999998888764 5677776666 445556779999999999874 555
Q ss_pred hhH
Q psy11928 156 FDD 158 (184)
Q Consensus 156 ~~~ 158 (184)
.++
T Consensus 346 ~d~ 348 (1391)
T KOG0065|consen 346 RDE 348 (1391)
T ss_pred HHH
Confidence 544
No 426
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=2.7e-11 Score=101.82 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=58.7
Q ss_pred cCCChhHHHHHHHHHHHhc---------CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Q psy11928 73 KDLSGGQKARVALAELTLN---------APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIR 135 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~---------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 135 (184)
..+|.||++++.||.+++. +|+|+|||||+++||+..+..+.+.+.+.+..++++||+.+.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 5789999999999999999 99999999999999999999999999876779999999987765
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.22 E-value=1.2e-11 Score=94.58 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=59.6
Q ss_pred HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHH---Hh-cCcEEEEEec
Q psy11928 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAI---NE-YKGGVIIVSH 129 (184)
Q Consensus 55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l---~~-~~~tiiivsH 129 (184)
.+++..++..+... +..+++|+|++|...+... +.+|+++|+|||++|+|+.....+. ..+ .+ .+.++|++||
T Consensus 43 d~il~~~~~~d~~~-~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH 120 (185)
T smart00534 43 DRIFTRIGASDSLA-QGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATH 120 (185)
T ss_pred ceEEEEeCCCCchh-ccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 34566777766654 4788999999874444432 4599999999999999999766553 333 33 3679999999
Q ss_pred CHHHHHhhcCe
Q psy11928 130 DERLIRDTECT 140 (184)
Q Consensus 130 d~~~~~~~~~~ 140 (184)
+.+. ...|+.
T Consensus 121 ~~~l-~~~~~~ 130 (185)
T smart00534 121 YHEL-TKLADE 130 (185)
T ss_pred HHHH-HHHhhc
Confidence 9964 456653
No 428
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.5e-10 Score=103.52 Aligned_cols=103 Identities=26% Similarity=0.329 Sum_probs=82.9
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA--PDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~--p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 131 (184)
.|-.+||...-..+....|||||.||+-||.-+=.+ -=+++||||+-||-+.-.+.|.+.|++ .|.|+|+|.||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 355678876545568999999999999999998554 467899999999999998888887764 578999999999
Q ss_pred HHHHhhcCeEEEEe------CCeEEEecCChhHHHH
Q psy11928 132 RLIRDTECTLWVIE------NQTIEEIDGDFDDYRK 161 (184)
Q Consensus 132 ~~~~~~~~~i~~l~------~g~i~~~~~~~~~~~~ 161 (184)
+.+. .+|+++-|- .|.|+ +.|+++++.+
T Consensus 544 dti~-~AD~iIDiGPgAG~~GGeIv-~~Gtp~~i~~ 577 (935)
T COG0178 544 DTIR-AADHIIDIGPGAGEHGGEIV-AEGTPEELLA 577 (935)
T ss_pred HHHh-hcCEEEeeCCCCCcCCCEEE-EccCHHHHHh
Confidence 9986 589988774 35665 5788777654
No 429
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.18 E-value=5e-11 Score=92.61 Aligned_cols=83 Identities=8% Similarity=0.065 Sum_probs=63.7
Q ss_pred HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH----HHHHHHHhcCcEEEEEecC
Q psy11928 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID----ALADAINEYKGGVIIVSHD 130 (184)
Q Consensus 55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~----~l~~~l~~~~~tiiivsHd 130 (184)
..++..++..+... +..+.+|+|++|. ..+.+++.+|+++|+|||++|+|+.... .+.+.+.+.+.++|++||+
T Consensus 73 d~I~~~~~~~d~~~-~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~ 150 (204)
T cd03282 73 NRLLSRLSNDDSME-RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHF 150 (204)
T ss_pred hheeEecCCccccc-hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 45666777765554 4789999999976 4556688999999999999999997643 3444455568899999999
Q ss_pred HHHHHhhcC
Q psy11928 131 ERLIRDTEC 139 (184)
Q Consensus 131 ~~~~~~~~~ 139 (184)
.+++...+.
T Consensus 151 ~~l~~~~~~ 159 (204)
T cd03282 151 RDIAAILGN 159 (204)
T ss_pred HHHHHHhhc
Confidence 999987653
No 430
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.17 E-value=1.1e-10 Score=108.25 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=63.4
Q ss_pred ccccCCChhHHHHHHHHHHH------hcC--CCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928 70 IKMKDLSGGQKARVALAELT------LNA--PDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral------~~~--p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 138 (184)
+++.+|||||+-.++||.+| ..+ -+++++||||.+||+..+..+.+.|... +.+|+|||||.++.+. +
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~-~ 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKER-A 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHh-C
Confidence 58899999999998888776 445 6999999999999999999999998754 5799999999999976 4
Q ss_pred CeEEEEe
Q psy11928 139 CTLWVIE 145 (184)
Q Consensus 139 ~~i~~l~ 145 (184)
+.++.++
T Consensus 890 ~~~i~V~ 896 (908)
T COG0419 890 DVRIRVK 896 (908)
T ss_pred CeEEEEE
Confidence 5555554
No 431
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.15 E-value=7e-11 Score=113.19 Aligned_cols=67 Identities=22% Similarity=0.251 Sum_probs=59.7
Q ss_pred ccccCCChhHHHHHH----HHHH--------HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928 70 IKMKDLSGGQKARVA----LAEL--------TLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~----lara--------l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 136 (184)
++++.|||||||+++ +|++ +..+|++++|||||++||+.++..+++++.+++.++||+||+++-...
T Consensus 1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~Wg~Y~ 1321 (1353)
T TIGR02680 1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREWGCYP 1321 (1353)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchhcccc
Confidence 357999999999996 5645 458999999999999999999999999999999999999999887654
No 432
>PRK13695 putative NTPase; Provisional
Probab=99.11 E-value=3.3e-10 Score=85.63 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=76.9
Q ss_pred ccccCCChhHHHHHHHHHHHhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 70 IKMKDLSGGQKARVALAELTLNAPDVIILDE--PTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
++...+|++++-++.+++..+.+|+++++|| |+.++|+..++.+.+.+ +.+.++|+|+|+. .+...++++..+.+|
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQEIKSRPGG 151 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHHHhccCCc
Confidence 4567899999999999999999999999999 77788888777887777 6789999999995 555678999999999
Q ss_pred eEEEec-CChhHHHHHHHHHh
Q psy11928 148 TIEEID-GDFDDYRKELLEAL 167 (184)
Q Consensus 148 ~i~~~~-~~~~~~~~~~~~~~ 167 (184)
++.+.. .+.+...+.+++.+
T Consensus 152 ~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 152 RVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred EEEEEcchhhhhHHHHHHHHH
Confidence 987653 34455555555443
No 433
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.08 E-value=2e-09 Score=84.08 Aligned_cols=85 Identities=32% Similarity=0.419 Sum_probs=62.9
Q ss_pred HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEE
Q psy11928 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEYK--GGV 124 (184)
Q Consensus 51 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~ti 124 (184)
...+.+.+...++.. ..||||||..++||.-| ..++++++||||.++||...+..+.++|.+.. .-+
T Consensus 120 ~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ 192 (220)
T PF02463_consen 120 LKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQF 192 (220)
T ss_dssp HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEE
T ss_pred ccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345666677666643 28999999999998765 45679999999999999999999999999876 679
Q ss_pred EEEecCHHHHHhhcCeEEE
Q psy11928 125 IIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 125 iivsHd~~~~~~~~~~i~~ 143 (184)
|++||+...... +++.+.
T Consensus 193 ii~Th~~~~~~~-a~~~~~ 210 (220)
T PF02463_consen 193 IITTHNPEMFED-ADKLIG 210 (220)
T ss_dssp EEE-S-HHHHTT--SEEEE
T ss_pred cccccccccccc-cccccc
Confidence 999999888875 566543
No 434
>PRK14079 recF recombination protein F; Provisional
Probab=99.05 E-value=6.4e-10 Score=93.03 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=61.7
Q ss_pred cCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEE
Q psy11928 73 KDLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
..+|+||++++.+|..|+ .+|+++||||||++||...+.++.+.+.....++|-.|+ ....|++++.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~----~~~~~~~~~~ 337 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE----APPGAALTLR 337 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC----CCCCCceEEE
Confidence 568999999999999998 899999999999999999999999999765544444443 3346789999
Q ss_pred EeCCeEE
Q psy11928 144 IENQTIE 150 (184)
Q Consensus 144 l~~g~i~ 150 (184)
+++|++.
T Consensus 338 ~~~~~~~ 344 (349)
T PRK14079 338 IEAGVFT 344 (349)
T ss_pred EeccEec
Confidence 9998764
No 435
>KOG0063|consensus
Probab=99.04 E-value=3.3e-10 Score=95.29 Aligned_cols=91 Identities=23% Similarity=0.330 Sum_probs=78.2
Q ss_pred HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE 131 (184)
Q Consensus 55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~ 131 (184)
.++++.+.|....+ +-+.+||||+-||.+||.+-+++.++.++|||.+.||...+......|+++ ..-||+|.||+
T Consensus 195 ~~~~~~~~L~~~~~-re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL 273 (592)
T KOG0063|consen 195 EEVCDQLDLNNLLD-REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL 273 (592)
T ss_pred HHHHHHHHHhhHHH-hhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec
Confidence 44566667765554 578999999999999999999999999999999999999998887777765 46799999999
Q ss_pred HHHHhhcCeEEEEeC
Q psy11928 132 RLIRDTECTLWVIEN 146 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~ 146 (184)
+.+...+|-+..+..
T Consensus 274 sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 274 SVLDYLSDFICCLYG 288 (592)
T ss_pred hHHHhhhcceeEEec
Confidence 999999999887753
No 436
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.93 E-value=2.1e-09 Score=84.23 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=55.6
Q ss_pred ccCCChhHHHH----HHHHHHH--hcCCCEEEeeCC---CCCCCHHHH-HHHHHHHHhc-CcEEEEEecCHHHHHhhcCe
Q psy11928 72 MKDLSGGQKAR----VALAELT--LNAPDVIILDEP---TNNLDIESI-DALADAINEY-KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 72 ~~~LSgG~kqr----v~laral--~~~p~illlDEP---t~~LD~~~~-~~l~~~l~~~-~~tiiivsHd~~~~~~~~~~ 140 (184)
..++|.|+.+. ..+++++ +.+|+++|+||| |+++|..+. ..+.+.+.+. +.++|++||+.+.. .++++
T Consensus 83 ~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~-~l~~~ 161 (216)
T cd03284 83 SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELT-ELEGK 161 (216)
T ss_pred hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHH-HHhhc
Confidence 35677777664 3466555 579999999999 999998764 5567777776 78999999997554 46666
Q ss_pred EEEEeCCeE
Q psy11928 141 LWVIENQTI 149 (184)
Q Consensus 141 i~~l~~g~i 149 (184)
+..++++++
T Consensus 162 ~~~v~~~~~ 170 (216)
T cd03284 162 LPRVKNFHV 170 (216)
T ss_pred CCCeEEEEE
Confidence 544555554
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.93 E-value=2.5e-09 Score=97.68 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=65.4
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH----HHHhcCcEEEEEecCHH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD----AINEYKGGVIIVSHDER 132 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~----~l~~~~~tiiivsHd~~ 132 (184)
++..+|-.+... +.+++||+||++++.|++++ .+|+++|+|||++|+|+.....+.. .+.+.+.++|++||+.+
T Consensus 374 i~~~ig~~~si~-~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e 451 (782)
T PRK00409 374 IFADIGDEQSIE-QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE 451 (782)
T ss_pred EEEecCCccchh-hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence 334445444443 36789999999999999988 8999999999999999997766643 33445789999999999
Q ss_pred HHHhhcCeEEE
Q psy11928 133 LIRDTECTLWV 143 (184)
Q Consensus 133 ~~~~~~~~i~~ 143 (184)
.....+++..+
T Consensus 452 l~~~~~~~~~v 462 (782)
T PRK00409 452 LKALMYNREGV 462 (782)
T ss_pred HHHHHhcCCCe
Confidence 88776665443
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.85 E-value=1.1e-08 Score=79.47 Aligned_cols=64 Identities=30% Similarity=0.474 Sum_probs=52.0
Q ss_pred cccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928 71 KMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI 134 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 134 (184)
+...+|.|+++.+.++.++...+ .++++|||-++|.|.....+.+.+.+. +.-||++||++.++
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 56778999999998888887766 899999999999999999999999764 46899999998765
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.83 E-value=1.6e-08 Score=76.68 Aligned_cols=76 Identities=5% Similarity=0.052 Sum_probs=60.1
Q ss_pred ccccCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCC---HHHHHHHHHHH---HhcCcEEEEEecCHHH----
Q psy11928 70 IKMKDLSGGQKA------RVALAELTLNAPDVIILDEPTNNLD---IESIDALADAI---NEYKGGVIIVSHDERL---- 133 (184)
Q Consensus 70 ~~~~~LSgG~kq------rv~laral~~~p~illlDEPt~~LD---~~~~~~l~~~l---~~~~~tiiivsHd~~~---- 133 (184)
..+..+|+|++| +.....+...+|+++++|||++.+| ...+..+.+++ ++.+.|+|+++|+...
T Consensus 67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence 467889999998 5555555678999999999999999 66666665555 4457899999998765
Q ss_pred -----HHhhcCeEEEEe
Q psy11928 134 -----IRDTECTLWVIE 145 (184)
Q Consensus 134 -----~~~~~~~i~~l~ 145 (184)
+..+||.++.++
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 677889888776
No 440
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.82 E-value=3e-08 Score=76.72 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHH-HHH---HhcCcEEEEEecCHHHHHhh
Q psy11928 79 QKARVALAELTLN--APDVIILDEPTNNLDIESIDALA-DAI---NEYKGGVIIVSHDERLIRDT 137 (184)
Q Consensus 79 ~kqrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l---~~~~~tiiivsHd~~~~~~~ 137 (184)
+.+|+.-+...+. +|+++|+||||+|+|+..+..+. ..+ .+.+.++|++||+++++...
T Consensus 90 e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 90 ELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 3455544444455 99999999999999999876553 233 34478999999999998765
No 441
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.77 E-value=2.1e-08 Score=67.98 Aligned_cols=50 Identities=34% Similarity=0.476 Sum_probs=38.4
Q ss_pred ccccCCChhHHHH-HHHHHH--H----hc------CCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 70 IKMKDLSGGQKAR-VALAEL--T----LN------APDVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 70 ~~~~~LSgG~kqr-v~lara--l----~~------~p~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
+..+.+||||||. +.++.+ + .. .|.+++|||||++||+..+..+++++++
T Consensus 28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4789999999954 444333 2 22 3799999999999999999999998863
No 442
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.76 E-value=3e-08 Score=77.51 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH-HHHHHHHHh---c---CcEEEEEecCHHHHHhhc
Q psy11928 77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESI-DALADAINE---Y---KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~-~~l~~~l~~---~---~~tiiivsHd~~~~~~~~ 138 (184)
.-+-||++++++++.+|+++|+|||++|+|+... ..+...+++ . +.++|++||+.+.+....
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 3567999999999999999999999999999753 333334432 2 248999999999988653
No 443
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.71 E-value=2.3e-08 Score=91.28 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=58.4
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHH---HhcCcEEEEEecCHHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAI---NEYKGGVIIVSHDERL 133 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l---~~~~~tiiivsHd~~~ 133 (184)
...++-..... ..+++||+||++++.+++++ .+|+++|+|||++|+|+.....+. .++ .+.+.++|++||+.+.
T Consensus 370 ~~~i~~~~si~-~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 370 FADIGDEQSIE-QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred eeecChHhHHh-hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 33344433333 36789999999999998876 789999999999999999887763 333 3457899999999887
Q ss_pred HH
Q psy11928 134 IR 135 (184)
Q Consensus 134 ~~ 135 (184)
..
T Consensus 448 ~~ 449 (771)
T TIGR01069 448 KA 449 (771)
T ss_pred HH
Confidence 44
No 444
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.55 E-value=9.6e-08 Score=74.30 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=44.6
Q ss_pred cccCCChh--HHHHHHHHHHHhcCCCEEEeeCCC-----CCCCHHHHHHHHHHHHhc
Q psy11928 71 KMKDLSGG--QKARVALAELTLNAPDVIILDEPT-----NNLDIESIDALADAINEY 120 (184)
Q Consensus 71 ~~~~LSgG--~kqrv~laral~~~p~illlDEPt-----~~LD~~~~~~l~~~l~~~ 120 (184)
.++..||+ +++++.||++++.+|+++++|||| ++||+.++..+.+.+.++
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 35666666 888899999999999999999999 999999999999999764
No 445
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.35 E-value=1.2e-06 Score=78.93 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=49.8
Q ss_pred cccCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCCCCHHHHHHHHH-HHHhcCcEEEEEecCHHHHH
Q psy11928 71 KMKDLSGGQKARVALAELTL------NAPDVIILDEPTNNLDIESIDALAD-AINEYKGGVIIVSHDERLIR 135 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~------~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~tiiivsHd~~~~~ 135 (184)
++..|||||+|-++||..++ ...++ ++||||+.||...+..+.. ++.....-||+.|||-+.-.
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d~e~~~ 618 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEEVDE 618 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccCCeEEEEechHhhCH
Confidence 56789999999976665442 23566 5699999999999999874 77776778999999877644
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.24 E-value=1.1e-06 Score=70.31 Aligned_cols=75 Identities=19% Similarity=0.120 Sum_probs=62.3
Q ss_pred cCCChhH--------HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH-H-HHHHHHHhcCcEEEEEecCHHHHHhhcCeEE
Q psy11928 73 KDLSGGQ--------KARVALAELTLNAPDVIILDEPTNNLDIESI-D-ALADAINEYKGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 73 ~~LSgG~--------kqrv~laral~~~p~illlDEPt~~LD~~~~-~-~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~ 142 (184)
..+|||+ +||+++||++..+++|.++ ||+.+|..+. . -+.+.++..+.|+|++||++..... .+.|.
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~-~paI~ 204 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRI-FPAID 204 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCC-CCeEE
Confidence 4579999 9999999999899999999 9999995333 2 3455555566899999999999875 68999
Q ss_pred EEeCCeEE
Q psy11928 143 VIENQTIE 150 (184)
Q Consensus 143 ~l~~g~i~ 150 (184)
+++.|++.
T Consensus 205 vl~s~sr~ 212 (249)
T cd01128 205 ILKSGTRK 212 (249)
T ss_pred EcCCCCcc
Confidence 99999874
No 447
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.21 E-value=8.5e-06 Score=65.94 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH--H-----------HhhcCeEEEEeC
Q psy11928 80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL--I-----------RDTECTLWVIEN 146 (184)
Q Consensus 80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~--~-----------~~~~~~i~~l~~ 146 (184)
|.......+.+++|+++++|||++. .....+.+.++ .+.++|++||+... + ..+++++++|++
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~ 257 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSR 257 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEec
Confidence 3444455556689999999999853 33444444444 48899999997655 4 256799999986
Q ss_pred Ce
Q psy11928 147 QT 148 (184)
Q Consensus 147 g~ 148 (184)
|+
T Consensus 258 ~~ 259 (270)
T TIGR02858 258 RK 259 (270)
T ss_pred CC
Confidence 54
No 448
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.14 E-value=9.3e-06 Score=63.73 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH----HHhc-CcEEEEEecCHHHHHhhc
Q psy11928 78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA----INEY-KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~----l~~~-~~tiiivsHd~~~~~~~~ 138 (184)
.+-+++.-+...+.+|.++|+|||++|+++.....+... +.+. +.++|++||+.+.+...+
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 344555555555689999999999999999876554443 3444 779999999999988765
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.13 E-value=6.8e-06 Score=75.91 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=52.1
Q ss_pred hcCCCEEEeeCCCCCC-CHHHHHHHHHHHHh---cCcEEEEEecCHHHHH---------hhcCeEEEEeCCeEE
Q psy11928 90 LNAPDVIILDEPTNNL-DIESIDALADAINE---YKGGVIIVSHDERLIR---------DTECTLWVIENQTIE 150 (184)
Q Consensus 90 ~~~p~illlDEPt~~L-D~~~~~~l~~~l~~---~~~tiiivsHd~~~~~---------~~~~~i~~l~~g~i~ 150 (184)
..+|.++++|||+.+| |+...+.+.+.++. .+.+++++||+++.+. ..|++.+++.+|++.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~ 723 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR 723 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence 5799999999999999 68888888887754 4789999999999985 468888889888764
No 450
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.96 E-value=5.3e-05 Score=62.05 Aligned_cols=69 Identities=33% Similarity=0.509 Sum_probs=60.0
Q ss_pred ccCCChhHHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCc--EEEEEecCHHHHHhhcCe
Q psy11928 72 MKDLSGGQKARVALAELTLN--APDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHDERLIRDTECT 140 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--tiiivsHd~~~~~~~~~~ 140 (184)
..+||-|+-+-++++.+|.. .|.++++|||=++|-|.....+..++.+..+ -|++|||...++..+-.+
T Consensus 268 ~~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~ 340 (373)
T COG4637 268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEH 340 (373)
T ss_pred hhhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhcccc
Confidence 34999999999999999975 4899999999999999999999998887643 899999999998876544
No 451
>PF13175 AAA_15: AAA ATPase domain
Probab=97.95 E-value=2.5e-05 Score=66.03 Aligned_cols=64 Identities=17% Similarity=0.357 Sum_probs=52.6
Q ss_pred ccccCCChhHHHHHHHHHHHh------cC-CC---EEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928 70 IKMKDLSGGQKARVALAELTL------NA-PD---VIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL 133 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~------~~-p~---illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~ 133 (184)
-++..+|.|.++.+.|+..+. .+ +. ++++|||=.+|.|..+..+.+.|.+. +.-||++||.+..
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 377899999998888776641 22 22 99999999999999999999998764 4589999999865
No 452
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.94 E-value=3.7e-05 Score=60.49 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH----HHHHHHHHhc-CcEEEEEecCHHHHHh
Q psy11928 79 QKARVALAELTLNAPDVIILDEPTNNLDIESI----DALADAINEY-KGGVIIVSHDERLIRD 136 (184)
Q Consensus 79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~----~~l~~~l~~~-~~tiiivsHd~~~~~~ 136 (184)
+-+++.-+..-+.+|.++|+|||++|.|+... ..+.+.+.+. +.++|++||+.+....
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 44455444455778999999999777775433 3345555555 6799999999998653
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.80 E-value=0.00011 Score=58.00 Aligned_cols=73 Identities=18% Similarity=0.091 Sum_probs=53.1
Q ss_pred cCCChhHHHHHHHHHHHhc--CCCEEEeeCCCCC---CCHHHHHHHHHHH---HhcCcEEEEEecCHHH-------HHhh
Q psy11928 73 KDLSGGQKARVALAELTLN--APDVIILDEPTNN---LDIESIDALADAI---NEYKGGVIIVSHDERL-------IRDT 137 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~--~p~illlDEPt~~---LD~~~~~~l~~~l---~~~~~tiiivsHd~~~-------~~~~ 137 (184)
...|.++++.+..+...+. +|+++++||||+. .|......+.+.+ .+.+.|+++++|+..+ +..+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence 3457888999999998887 9999999999964 4455445554444 3447899999997654 4556
Q ss_pred cCeEEEEe
Q psy11928 138 ECTLWVIE 145 (184)
Q Consensus 138 ~~~i~~l~ 145 (184)
+|-++.|+
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 67666665
No 454
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.77 E-value=4.8e-05 Score=60.13 Aligned_cols=71 Identities=23% Similarity=0.298 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCC----CHHHHHHHHHHHHhc---CcEEEEEecCHHHH--------
Q psy11928 74 DLSGGQKARVALAELTL----NAPDVIILDEPTNNL----DIESIDALADAINEY---KGGVIIVSHDERLI-------- 134 (184)
Q Consensus 74 ~LSgG~kqrv~laral~----~~p~illlDEPt~~L----D~~~~~~l~~~l~~~---~~tiiivsHd~~~~-------- 134 (184)
.+|+++.++..+.+.+. .+|+++++||||+++ |+.....+.+.++.+ +.|+ ++||+....
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~ 173 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTIL 173 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeE
Confidence 46777666655555443 369999999999999 777777788877643 4554 556665442
Q ss_pred HhhcCeEEEEe
Q psy11928 135 RDTECTLWVIE 145 (184)
Q Consensus 135 ~~~~~~i~~l~ 145 (184)
..+||-++.|+
T Consensus 174 ~~~~DgvI~L~ 184 (230)
T PRK08533 174 RTAATMLIRLE 184 (230)
T ss_pred EEeeeEEEEEE
Confidence 34556666554
No 455
>KOG0962|consensus
Probab=97.76 E-value=5.1e-05 Score=71.59 Aligned_cols=64 Identities=42% Similarity=0.562 Sum_probs=49.9
Q ss_pred CCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----c----CcEEEEEecCHHHHHhh
Q psy11928 74 DLSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----Y----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 74 ~LSgG~kq------rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~----~~tiiivsHd~~~~~~~ 137 (184)
-=|.|||- |+++|=.+..++.+|-|||||.+||.....-+...+.+ . +--.|++|||..|+..+
T Consensus 1183 RcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i 1260 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLL 1260 (1294)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHh
Confidence 34778876 55666678999999999999999999988766554432 1 34799999999998764
No 456
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.72 E-value=0.00018 Score=55.15 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=62.9
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
.....|.||-=---+.+. .++--++|||||-++|.|.-+-.+...|+.+ |.-+||+||.+-.+.-...+|+-++.+
T Consensus 126 sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~ 204 (233)
T COG3910 126 SLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISES 204 (233)
T ss_pred chhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecC
Confidence 467789999754444444 4567899999999999999999988888764 678999999998887666788888877
Q ss_pred eEE
Q psy11928 148 TIE 150 (184)
Q Consensus 148 ~i~ 150 (184)
.+.
T Consensus 205 g~~ 207 (233)
T COG3910 205 GIE 207 (233)
T ss_pred Ccc
Confidence 664
No 457
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.69 E-value=8.2e-05 Score=71.32 Aligned_cols=70 Identities=29% Similarity=0.392 Sum_probs=60.0
Q ss_pred cccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeE
Q psy11928 71 KMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i 141 (184)
.++.||||||--++||..| ..+.|+.+|||-=++||..++..+.++|+++. .=.|+|||....... +++.
T Consensus 1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~-ad~l 1138 (1163)
T COG1196 1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEA-ADRL 1138 (1163)
T ss_pred chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHH-HHHH
Confidence 4678999999999998876 56679999999999999999999999999874 459999999877764 5554
No 458
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.68 E-value=0.0001 Score=68.49 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=44.8
Q ss_pred HHHHHhcCCCEEEeeCCCCCC-CHHHHHHHHHHHH---hcCcEEEEEecCHHHHHh
Q psy11928 85 LAELTLNAPDVIILDEPTNNL-DIESIDALADAIN---EYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 85 laral~~~p~illlDEPt~~L-D~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~ 136 (184)
+.+++..+|+++++|||+.+| |+..+..+.+.++ +.+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 567788999999999999999 7888888777774 457899999999999875
No 459
>PF13166 AAA_13: AAA domain
Probab=97.66 E-value=0.00021 Score=65.03 Aligned_cols=67 Identities=28% Similarity=0.439 Sum_probs=56.5
Q ss_pred cccCCChhHHHHHHHHHHH--hc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---C--cEEEEEecCHHHHHh
Q psy11928 71 KMKDLSGGQKARVALAELT--LN-------APDVIILDEPTNNLDIESIDALADAINEY---K--GGVIIVSHDERLIRD 136 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral--~~-------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~--~tiiivsHd~~~~~~ 136 (184)
+...||.|||.-++||-=| +. +..++++|-|-|+||...+..+...|.+. . .=||+-|||..|...
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~ 576 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKE 576 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHH
Confidence 4689999999999998643 33 67899999999999999999999988766 2 469999999999765
Q ss_pred h
Q psy11928 137 T 137 (184)
Q Consensus 137 ~ 137 (184)
+
T Consensus 577 l 577 (712)
T PF13166_consen 577 L 577 (712)
T ss_pred H
Confidence 4
No 460
>KOG0933|consensus
Probab=97.65 E-value=3.3e-05 Score=70.81 Aligned_cols=63 Identities=30% Similarity=0.483 Sum_probs=51.9
Q ss_pred ccccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHh-cC-cEEEEEecCHH
Q psy11928 70 IKMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINE-YK-GGVIIVSHDER 132 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~-~~-~tiiivsHd~~ 132 (184)
...++||||||-.|+|+..| ..+++++||||--++||....+.+-.+|+. ++ .-+|+||=--.
T Consensus 1078 eSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKeG 1146 (1174)
T KOG0933|consen 1078 ESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKEG 1146 (1174)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchhh
Confidence 36799999999999887655 456799999999999999999999999986 44 46777775433
No 461
>KOG0964|consensus
Probab=97.53 E-value=6.2e-05 Score=68.91 Aligned_cols=71 Identities=31% Similarity=0.422 Sum_probs=59.7
Q ss_pred cccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeEE
Q psy11928 71 KMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i~ 142 (184)
.+.+||||||--|+||..++ -+++++|+||--++||+..+..+-.+|+++. .-+|.+|-.++.+. .+|+.+
T Consensus 1094 ~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~-vAdKfy 1170 (1200)
T KOG0964|consen 1094 EMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLS-VADKFY 1170 (1200)
T ss_pred HHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHH-HHHhhh
Confidence 46799999999999998874 3459999999999999999999999999874 35777787777775 677765
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.49 E-value=0.00016 Score=57.33 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=33.8
Q ss_pred HHhcCCCEEEeeCCCCC------CCHHHHHHHHHHHH----hcCcEEEEEecCH
Q psy11928 88 LTLNAPDVIILDEPTNN------LDIESIDALADAIN----EYKGGVIIVSHDE 131 (184)
Q Consensus 88 al~~~p~illlDEPt~~------LD~~~~~~l~~~l~----~~~~tiiivsHd~ 131 (184)
+...+|+++++| |+++ +|+.....+++.+. +.+.|||+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 7754 68888877777664 4578999999986
No 463
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.43 E-value=0.00055 Score=49.80 Aligned_cols=63 Identities=21% Similarity=0.077 Sum_probs=45.7
Q ss_pred cCCChhHHHHHHHHHHHhcCCCEEEeeCCCC----------CCCHHHHHHHHHHH---HhcCcEEEEEecCHHHHH
Q psy11928 73 KDLSGGQKARVALAELTLNAPDVIILDEPTN----------NLDIESIDALADAI---NEYKGGVIIVSHDERLIR 135 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~illlDEPt~----------~LD~~~~~~l~~~l---~~~~~tiiivsHd~~~~~ 135 (184)
...+.+..+++..+++...+|+++++|||++ +.|......+.++. ++.+.|+|+++|......
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence 3445566677888999999999999999995 44545455555544 345789999999875543
No 464
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.0015 Score=54.84 Aligned_cols=76 Identities=26% Similarity=0.264 Sum_probs=60.9
Q ss_pred cCCChhHHHHHHHHHHH---------hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcC---e
Q psy11928 73 KDLSGGQKARVALAELT---------LNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTEC---T 140 (184)
Q Consensus 73 ~~LSgG~kqrv~laral---------~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~---~ 140 (184)
...|-||++-+.++.-| ...++|||||+-++.||..-+..+.+. .+.+.-++++|-+.+.+...-. +
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~~~Q~fvT~t~~~~~~~~~~~~~~ 352 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IELGVQVFVTTTDLEDIDDNLDENAQ 352 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cccCCeEEEEccCHHHhhhhhhccce
Confidence 57899999998888765 457899999999999999999999999 6667767777777777663222 6
Q ss_pred EEEEeCCeE
Q psy11928 141 LWVIENQTI 149 (184)
Q Consensus 141 i~~l~~g~i 149 (184)
++.+.+|++
T Consensus 353 ~f~V~~g~i 361 (363)
T COG1195 353 MFHVEDGKI 361 (363)
T ss_pred EEEEeccee
Confidence 777788876
No 465
>KOG0996|consensus
Probab=96.97 E-value=0.00067 Score=63.42 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=57.4
Q ss_pred ccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeEE
Q psy11928 70 IKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i~ 142 (184)
+.+.+||||+|-.-+||..++. +.++++|||--++||..+...+-++|++.. .-+||||=.-+-. .+++|.+
T Consensus 1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnMF-ELa~rLv 1268 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMF-ELANRLV 1268 (1293)
T ss_pred hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhHH-HHHhhhe
Confidence 4799999999999999888753 469999999999999999999999998763 4577777543333 3567654
No 466
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=96.93 E-value=0.0031 Score=58.83 Aligned_cols=67 Identities=22% Similarity=0.200 Sum_probs=50.9
Q ss_pred ccCCChhHHHHHHHHHHHhc--CCCEEEeeCC---CCCCCHHHHH-HHHHHHHhc-CcEEEEEecCHHHHHhhcC
Q psy11928 72 MKDLSGGQKARVALAELTLN--APDVIILDEP---TNNLDIESID-ALADAINEY-KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~--~p~illlDEP---t~~LD~~~~~-~l~~~l~~~-~~tiiivsHd~~~~~~~~~ 139 (184)
...+|.=|.....++.++-. ++.++|+||| |+.+|..+.. .+.+.+.+. +.++|++||..+... +++
T Consensus 664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~-l~~ 737 (854)
T PRK05399 664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTE-LEE 737 (854)
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHH-Hhh
Confidence 45678777777888877754 9999999999 9999977743 466777665 478999999966543 444
No 467
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.92 E-value=0.002 Score=59.81 Aligned_cols=47 Identities=23% Similarity=0.172 Sum_probs=38.4
Q ss_pred HhcCCCEEEeeCCCCCCC-HHHHHHHHHHHH---hcCcEEEEEecCHHHHH
Q psy11928 89 TLNAPDVIILDEPTNNLD-IESIDALADAIN---EYKGGVIIVSHDERLIR 135 (184)
Q Consensus 89 l~~~p~illlDEPt~~LD-~~~~~~l~~~l~---~~~~tiiivsHd~~~~~ 135 (184)
+-.+|.++++|||+..|| +..+..+.+.++ +.+.+++++||+++.+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID 682 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence 346899999999999999 666777766664 45789999999998765
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.90 E-value=9.1e-05 Score=64.71 Aligned_cols=75 Identities=7% Similarity=0.026 Sum_probs=51.0
Q ss_pred hCCCCcccccccccCCChhHHHHHHHH--HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEecCHHH-
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALA--ELTLNAPDVIILDEPTNNLDIESIDALADAI---NEYKGGVIIVSHDERL- 133 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~la--ral~~~p~illlDEPt~~LD~~~~~~l~~~l---~~~~~tiiivsHd~~~- 133 (184)
.++++...+ +.+..+|+|++|||.|+ .++...|+.. ...++.+.+++ ++.+.|+|++||+.+.
T Consensus 102 ~~~l~~~l~-~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~ 170 (484)
T TIGR02655 102 GFDLSALIE-RINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEY 170 (484)
T ss_pred cCCHHHHHH-HHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccc
Confidence 344444333 35678999999999999 5555555433 34555555554 4558899999998764
Q ss_pred --------HHhhcCeEEEEe
Q psy11928 134 --------IRDTECTLWVIE 145 (184)
Q Consensus 134 --------~~~~~~~i~~l~ 145 (184)
.+.+||.|+.|+
T Consensus 171 ~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 171 GPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred cccccCCceeEeeeeEEEEE
Confidence 256888888775
No 469
>KOG0018|consensus
Probab=96.83 E-value=0.0011 Score=61.42 Aligned_cols=72 Identities=31% Similarity=0.331 Sum_probs=58.9
Q ss_pred ccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEE
Q psy11928 70 IKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~ 142 (184)
++..+||||+|--.+||..++- ++++.+|||--++||..+...+..+|+.-+.-+|+||=-.++... +|-.+
T Consensus 1047 r~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr~~~~Q~IvISLK~~~y~k-adaLV 1122 (1141)
T KOG0018|consen 1047 RPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIRSSNFQFIVISLKEEFYQK-ADALV 1122 (1141)
T ss_pred CchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHhcCCceEEEEeccHHHhhh-hhcee
Confidence 4678999999999999998853 469999999999999999999999999666667777766666654 44443
No 470
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.01 Score=52.40 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=59.5
Q ss_pred ccCCChhHHHHHHHHHH--HhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeEEEEe
Q psy11928 72 MKDLSGGQKARVALAEL--TLNA--PDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTLWVIE 145 (184)
Q Consensus 72 ~~~LSgG~kqrv~lara--l~~~--p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i~~l~ 145 (184)
.+..||||--|++||.- ++.. .+.|++||--.|+--.....+-+.|++.+ .-|+.|||-+..+.. ++.-+.+.
T Consensus 429 ~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~-ad~H~~V~ 507 (557)
T COG0497 429 AKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAM-ADTHFLVE 507 (557)
T ss_pred HhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhh-hcceEEEE
Confidence 36789999999999874 3433 56999999999999999999999999885 469999999999875 45544443
No 471
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.62 E-value=0.0046 Score=53.44 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=42.5
Q ss_pred CC--CCCCCHHHHHHHHHHHHhc-----Cc-----EEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928 100 EP--TNNLDIESIDALADAINEY-----KG-----GVIIVSHDERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 100 EP--t~~LD~~~~~~l~~~l~~~-----~~-----tiiivsHd~~~~~~~~~~i~~l~~g~i~~ 151 (184)
|| |+|+|+.....+.+++.+. |. ||++.|||+++ .+|+++..+.+|+++.
T Consensus 273 e~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 273 EPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVL 334 (438)
T ss_pred CCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEE
Confidence 64 7899999999999888764 33 89999999995 7899999999999864
No 472
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.0033 Score=52.28 Aligned_cols=41 Identities=20% Similarity=0.392 Sum_probs=35.7
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 96 IILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 96 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
+++|||+.+||+.+...+.+.+.+. +.++|++||+.+.+..
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLP 158 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChH
Confidence 5578999999999999999999886 4689999999887664
No 473
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.59 E-value=0.0059 Score=56.65 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=40.0
Q ss_pred HHhcCCCEEEeeCCCCCCC-HHHHHHHHHHHH---hcCcEEEEEecCHHHHHh
Q psy11928 88 LTLNAPDVIILDEPTNNLD-IESIDALADAIN---EYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 88 al~~~p~illlDEPt~~LD-~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~ 136 (184)
.+..+|.++++|||...|| +...+.+.+.++ +.+.+++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 3467899999999999999 777767766664 457899999999988654
No 474
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.59 E-value=0.0015 Score=49.82 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH--HHhhcCeEEEEeCC
Q psy11928 77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL--IRDTECTLWVIENQ 147 (184)
Q Consensus 77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~--~~~~~~~i~~l~~g 147 (184)
.|+-+|..||.++..+|+.+..+| +.+||..++.+.+.+.+. +.+|++.+|.+.+ +...||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 388999999999999999988887 789999999999888754 3589999999865 67789999988765
No 475
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.37 E-value=0.017 Score=49.85 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=56.5
Q ss_pred cccCCChhHHHHHHHHHHHh-------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 71 KMKDLSGGQKARVALAELTL-------NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~-------~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
..++.|.|+|+|+..+.+.+ .++-++++|+||++.|+. .++...+.+. |.+..+.||...++++.+.
T Consensus 218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~- 294 (432)
T PRK06793 218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK- 294 (432)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc-
Confidence 56899999999999998877 789999999999999986 5554455443 4578888887666666443
Q ss_pred EEEEeCCeEE
Q psy11928 141 LWVIENQTIE 150 (184)
Q Consensus 141 i~~l~~g~i~ 150 (184)
.+.|.+.
T Consensus 295 ---~~~GSiT 301 (432)
T PRK06793 295 ---TQKGSIT 301 (432)
T ss_pred ---CCCcceE
Confidence 3577663
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.32 E-value=0.007 Score=46.63 Aligned_cols=54 Identities=28% Similarity=0.267 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEE
Q psy11928 84 ALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 84 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~ 142 (184)
++.+++..+|+++++|||. |.+....+.+.. ..|..++.++|..+... ..+|++
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~ 119 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAK-TIDRII 119 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHH-HHhHHH
Confidence 5778999999999999996 677666555544 35788999999876543 344543
No 477
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.09 E-value=0.009 Score=49.24 Aligned_cols=72 Identities=22% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCc-EEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG-GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.-.+..+|-.+|+++++|||.+ .+. ..+.+.+. .|. +++.++|..+.. ...+|+..+..|++...+.+.+..
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~---~e~-~~~l~a~~-~g~~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG---DEA-FDFIRAVN-TGHPGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC---HHH-HHHHHHHh-cCCCeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHH
Confidence 3467778999999999999996 232 22333333 343 679999998854 457888777777664333333333
No 478
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=96.04 E-value=0.048 Score=46.66 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=62.6
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH-------------HHHHHHHhc-C--cEEEEEecCHHHHH
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID-------------ALADAINEY-K--GGVIIVSHDERLIR 135 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~-------------~l~~~l~~~-~--~tiiivsHd~~~~~ 135 (184)
...-||-+.+-..|=+++=.+.+.+|.||-+++-..-.+. .+.+.+.+. + .++|+||--...+.
T Consensus 318 tgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddll 397 (554)
T COG3044 318 TGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLL 397 (554)
T ss_pred cCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhh
Confidence 4678999999999999999999999999999876553332 233333333 3 68999999888888
Q ss_pred hhcCeEEEEeCCeEE
Q psy11928 136 DTECTLWVIENQTIE 150 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~ 150 (184)
..+||+++|++.+-.
T Consensus 398 a~aDRaIvMeDhrpk 412 (554)
T COG3044 398 AVADRAIVMEDHRPK 412 (554)
T ss_pred hhcceEEEecccCcc
Confidence 899999999998653
No 479
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=95.86 E-value=0.032 Score=47.99 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=60.0
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-------------------HHhcCcEEEEEecCHH
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA-------------------INEYKGGVIIVSHDER 132 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-------------------l~~~~~tiiivsHd~~ 132 (184)
..+=||-.-|-..|.-|+=...++||+||=|++=..-.++..++. ..++|.+.|+|+--..
T Consensus 320 T~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg 399 (448)
T PF09818_consen 320 TENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG 399 (448)
T ss_pred ccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch
Confidence 467899999999999999999999999999997554443333322 2345777777777777
Q ss_pred HHHhhcCeEEEEeCCeE
Q psy11928 133 LIRDTECTLWVIENQTI 149 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i 149 (184)
.....+|+|+.|++-+.
T Consensus 400 dy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 400 DYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhHhhCCEEEEecCccc
Confidence 77788999999988654
No 480
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.62 E-value=0.032 Score=48.30 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=42.6
Q ss_pred cCCCEEEeeCCCCCCCHHH-HHHHHHHHHh---cCcEEEEEe-cCHHHHHhhcCeEE-EEeCCeEEEec
Q psy11928 91 NAPDVIILDEPTNNLDIES-IDALADAINE---YKGGVIIVS-HDERLIRDTECTLW-VIENQTIEEID 153 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~-~~~l~~~l~~---~~~tiiivs-Hd~~~~~~~~~~i~-~l~~g~i~~~~ 153 (184)
.+|++|++|||...+|... ...+...++. .++.+|++| |++..+..+.+++. -+..|.++.+.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~ 261 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE 261 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeC
Confidence 4799999999999887653 4566666654 356677765 88888777666653 24456555443
No 481
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=0.051 Score=47.88 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=52.7
Q ss_pred cccC-CChhHHHHHHHHHHH---hcC-----CCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928 71 KMKD-LSGGQKARVALAELT---LNA-----PDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 71 ~~~~-LSgG~kqrv~laral---~~~-----p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 137 (184)
..++ ||.|++.-++++--| -.+ -+++++|.|.+++|..........++.. ++-|++-||+-.|+..+
T Consensus 525 ~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~rd~ 603 (758)
T COG4694 525 LVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFYRDI 603 (758)
T ss_pred cccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceehHHH
Confidence 3555 999999988876543 333 4688999999999999988888888754 57899999997776543
No 482
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.25 E-value=0.051 Score=49.30 Aligned_cols=73 Identities=26% Similarity=0.315 Sum_probs=55.0
Q ss_pred cCCChhHHHHHH---HHHHHhc--------CC--CEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecC--HHHHHhh
Q psy11928 73 KDLSGGQKARVA---LAELTLN--------AP--DVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD--ERLIRDT 137 (184)
Q Consensus 73 ~~LSgG~kqrv~---laral~~--------~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd--~~~~~~~ 137 (184)
..+|||||++++ ||.+|.. .| ..+||||.|+-=|+......+..++++|.-.+++|-. +..+..+
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~fglh~v~iTPlk~I~~l~~~ 1068 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREFGLHAVFITPLKEIRLLRHH 1068 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHcCceEEEechHHHHHHHHhh
Confidence 689999999975 5555532 22 4689999999999999999999999999888888853 4445554
Q ss_pred cCeEEEEe
Q psy11928 138 ECTLWVIE 145 (184)
Q Consensus 138 ~~~i~~l~ 145 (184)
....++++
T Consensus 1069 v~S~ivVh 1076 (1104)
T COG4913 1069 VRSAIVVH 1076 (1104)
T ss_pred ccceEEEe
Confidence 44444443
No 483
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.98 E-value=0.02 Score=56.20 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=46.7
Q ss_pred ccCCChhHHHHHHHHHHHh--------cC--------C-CEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEe-cCHHH
Q psy11928 72 MKDLSGGQKARVALAELTL--------NA--------P-DVIILDEPTNNLDIESIDALADAINEYKGGVIIVS-HDERL 133 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~--------~~--------p-~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivs-Hd~~~ 133 (184)
.+.||||||..+.....++ .. | .+|+|||. +++|..+...+++++..++.-+||+| +++.-
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~~q~i~~tP~~~~~ 1441 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLDMQLLIAAPENISP 1441 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCcEEEechhhccC
Confidence 6899999998877666554 21 2 34699999 99999999999999999887655555 44443
No 484
>PF13514 AAA_27: AAA domain
Probab=94.93 E-value=0.089 Score=50.68 Aligned_cols=66 Identities=29% Similarity=0.360 Sum_probs=51.9
Q ss_pred cccCCChhHHHHHHHH------HHH-hcCCCE-EEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHh
Q psy11928 71 KMKDLSGGQKARVALA------ELT-LNAPDV-IILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRD 136 (184)
Q Consensus 71 ~~~~LSgG~kqrv~la------ral-~~~p~i-lllDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~ 136 (184)
++..||.|.+=-+.|| ..+ ...+++ +|+|+||-+.|..-....+++|.++. .=||+=||+...+.-
T Consensus 1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~~ 1097 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVEL 1097 (1111)
T ss_pred eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHHH
Confidence 6789999998655554 444 345555 99999999999999999999998874 458888888887763
No 485
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=94.61 E-value=0.12 Score=48.40 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=46.6
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCC---CCCCCHHH-HHHHHHHHHh-cCcEEEEEecCH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEP---TNNLDIES-IDALADAINE-YKGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEP---t~~LD~~~-~~~l~~~l~~-~~~tiiivsHd~ 131 (184)
++.++|-.+.... --+.++.-|++-..|.+ -+.++.++|+||+ |+.+|..+ ...+.+.+.+ .+..++++||..
T Consensus 638 Iftrig~~d~i~~-g~STF~~Em~e~a~IL~-~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~ 715 (840)
T TIGR01070 638 IFTRIGASDDLAS-GRSTFMVEMTEAANILH-NATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYF 715 (840)
T ss_pred EEEecCcccchhc-CcchHHHHHHHHHHHHh-hCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCch
Confidence 3444454433221 22334333443333322 3678999999999 66666666 3446677766 577899999998
Q ss_pred HHHH
Q psy11928 132 RLIR 135 (184)
Q Consensus 132 ~~~~ 135 (184)
+...
T Consensus 716 eL~~ 719 (840)
T TIGR01070 716 ELTA 719 (840)
T ss_pred HHHH
Confidence 7654
No 486
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=93.95 E-value=0.3 Score=38.71 Aligned_cols=64 Identities=20% Similarity=0.146 Sum_probs=39.6
Q ss_pred cCCCh--hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH----HHHHHHh-cCcEEEEEecCHHHHHh
Q psy11928 73 KDLSG--GQKARVALAELTLNAPDVIILDEPTNNLDIESIDA----LADAINE-YKGGVIIVSHDERLIRD 136 (184)
Q Consensus 73 ~~LSg--G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~----l~~~l~~-~~~tiiivsHd~~~~~~ 136 (184)
..+|. .|-+++.=+.--+.+..++|+||+..|=++..... +.+.|.+ .+..++++||+.+....
T Consensus 101 ~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 101 SGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp TSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred cccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 44555 33333333333356788999999999999976543 4455555 46789999999887543
No 487
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.92 E-value=0.55 Score=32.23 Aligned_cols=59 Identities=37% Similarity=0.333 Sum_probs=45.6
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH---------HHHhcCcEEEEEecC
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD---------AINEYKGGVIIVSHD 130 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~---------~l~~~~~tiiivsHd 130 (184)
....++++..+..+.++-..+|+++++||+..-.+......... ........+|.++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 45677888888888888888899999999999999987765543 112235688888884
No 488
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.18 E-value=0.25 Score=41.32 Aligned_cols=45 Identities=29% Similarity=0.311 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCH
Q psy11928 83 VALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131 (184)
Q Consensus 83 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~ 131 (184)
-++.++|-++|+++++||+. |+++.....+.. ..|.+++.+.|-.
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTN 230 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCC
Confidence 34778899999999999997 888877655543 4477888888973
No 489
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.95 E-value=0.36 Score=36.04 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=43.0
Q ss_pred cCCCEEEeeCCCCCCC--HHHHHHHHHHHHhc--CcEEEEEecC-HHHHHhhcCeEEEEeC
Q psy11928 91 NAPDVIILDEPTNNLD--IESIDALADAINEY--KGGVIIVSHD-ERLIRDTECTLWVIEN 146 (184)
Q Consensus 91 ~~p~illlDEPt~~LD--~~~~~~l~~~l~~~--~~tiiivsHd-~~~~~~~~~~i~~l~~ 146 (184)
.+.++++|||-...++ ....+.+.++|++. +..+|++.++ ...+...+|-|-.|+.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 5689999999988644 45677888999765 3589999998 4556678888877654
No 490
>PRK04296 thymidine kinase; Provisional
Probab=92.63 E-value=1.2 Score=34.01 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=41.9
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecC---------H-HHHHhhcCeEEEEe
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD---------E-RLIRDTECTLWVIE 145 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd---------~-~~~~~~~~~i~~l~ 145 (184)
..+++++++||- --|+......+.+.++..+.+||++.++ . ..+..++|.|..|+
T Consensus 76 ~~~~dvviIDEa-q~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 76 GEKIDCVLIDEA-QFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCCCCEEEEEcc-ccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 347899999999 4477665666777777789999999999 2 34556788887764
No 491
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=92.37 E-value=0.32 Score=43.98 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=38.3
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
+...++.+|+..... ..+.++||| +|++|| +..||+..+..+.+.+.+
T Consensus 244 a~~~l~~~gl~~~~~-g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 244 ARRDLAETGVPEPKT-GLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHcCCCchhc-CchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 344566777765554 478889998 999999 799999999999999865
No 492
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.53 E-value=0.074 Score=41.53 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=35.1
Q ss_pred CCCEEEeeCCCCCC--CHHH-HH---HHHHHHHhcCcEEEEEecCHH--------HHHhhcCeEEEEe
Q psy11928 92 APDVIILDEPTNNL--DIES-ID---ALADAINEYKGGVIIVSHDER--------LIRDTECTLWVIE 145 (184)
Q Consensus 92 ~p~illlDEPt~~L--D~~~-~~---~l~~~l~~~~~tiiivsHd~~--------~~~~~~~~i~~l~ 145 (184)
+|+.++.|-|+.-+ ++.. ++ .+...+++.+.|+|+++|... .++.+||.++.++
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 57778888776542 3322 22 344455677899999999543 2456788888776
No 493
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=91.14 E-value=0.51 Score=35.41 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=42.7
Q ss_pred HHHHHhhCCCCc-ccccccccCCChhHHHHHH--HHHHHhc-CCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 54 ARKQLGTFGLAG-HAHTIKMKDLSGGQKARVA--LAELTLN-APDVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 54 ~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrv~--laral~~-~p~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
+.+.++..++.- ...+ ++..+|+|++|++. +.+.+-. +++++ |+|++|..+.+.+.+.+.+
T Consensus 127 i~~~l~~~~~~~iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~ 191 (196)
T PRK00454 127 MIEWLKEYGIPVLIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAK 191 (196)
T ss_pred HHHHHHHcCCcEEEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHH
Confidence 345566666542 3334 68889999999877 5555543 34443 9999999999999888865
No 494
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=90.63 E-value=0.45 Score=42.59 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=45.5
Q ss_pred HHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHh
Q psy11928 81 ARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRD 136 (184)
Q Consensus 81 qrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~ 136 (184)
|.++....+ ...|.+||.+||=++|-|.....++++++... .-+|++||..+++..
T Consensus 286 ~~l~~~~~~~~~~~~r~~ILLiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~ 347 (581)
T COG3593 286 QLLQAIGSLELERVARPNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSL 347 (581)
T ss_pred HHHHHHhHhhhhhhcccceEEEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccc
Confidence 444444443 34455999999999999999999999999887 789999999999874
No 495
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.40 E-value=0.51 Score=36.71 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=36.9
Q ss_pred cCCCEEEeeCCCCC------CCHHHHHHHHHHH---HhcCcEEEEEecC---------HHHHHhhcCeEEEEe
Q psy11928 91 NAPDVIILDEPTNN------LDIESIDALADAI---NEYKGGVIIVSHD---------ERLIRDTECTLWVIE 145 (184)
Q Consensus 91 ~~p~illlDEPt~~------LD~~~~~~l~~~l---~~~~~tiiivsHd---------~~~~~~~~~~i~~l~ 145 (184)
.+++.+++| |.+. .|...+..+.+++ ++.+.|++++||. ...++.+||.+++++
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 468999999 5443 3444455555544 4567899999995 234677889988885
No 496
>PRK13764 ATPase; Provisional
Probab=90.18 E-value=1.4 Score=39.78 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=44.4
Q ss_pred HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------------CHHHHHhhcCeEEEEeCCeEE
Q psy11928 88 LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSH---------------DERLIRDTECTLWVIENQTIE 150 (184)
Q Consensus 88 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH---------------d~~~~~~~~~~i~~l~~g~i~ 150 (184)
+|..+||++++||.-.. ++...+ ..+...+..++-+-| ++..+..++|+++.+++|++.
T Consensus 320 lLR~rPD~IivGEiRd~---Et~~~~-~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~ 393 (602)
T PRK13764 320 LLLVRPDYTIYDEMRKT---EDFKIF-ADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVS 393 (602)
T ss_pred HHhhCCCEEEECCCCCH---HHHHHH-HHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEE
Confidence 47889999999999843 333222 233344666777889 888888999999999999883
No 497
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=89.99 E-value=0.99 Score=34.32 Aligned_cols=65 Identities=8% Similarity=0.110 Sum_probs=48.1
Q ss_pred HHHHHHHh--cCCCEEEeeCCCCCCCH--HHHHHHHHHHHhcC--cEEEEEecC-HHHHHhhcCeEEEEeCC
Q psy11928 83 VALAELTL--NAPDVIILDEPTNNLDI--ESIDALADAINEYK--GGVIIVSHD-ERLIRDTECTLWVIENQ 147 (184)
Q Consensus 83 v~laral~--~~p~illlDEPt~~LD~--~~~~~l~~~l~~~~--~tiiivsHd-~~~~~~~~~~i~~l~~g 147 (184)
...|+..+ .+.++++|||-...++. ...+.+.++|++.. ..||++-++ ...+...+|-|-.|+.+
T Consensus 104 ~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~~~ 175 (178)
T PRK07414 104 WQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQITELRRS 175 (178)
T ss_pred HHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeeeeeecc
Confidence 34444444 45799999999987765 35678888887653 479999988 55566789988887665
No 498
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.78 E-value=1.3 Score=38.00 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=39.1
Q ss_pred HHHHHHhcCCCEEEeeC----------CCCCCCHHHHHHHHHHHHhc-------CcEEEEEecCHHHHHh
Q psy11928 84 ALAELTLNAPDVIILDE----------PTNNLDIESIDALADAINEY-------KGGVIIVSHDERLIRD 136 (184)
Q Consensus 84 ~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~~ 136 (184)
.+..|....|.|+++|| +.++.|......+.+++... +..||++||.++.+..
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 45556678999999999 55677877777777777643 2469999998876643
No 499
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.01 E-value=1.5 Score=33.73 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=47.2
Q ss_pred HHHHHHHh--cCCCEEEeeCCCCCCCH--HHHHHHHHHHHhcC--cEEEEEecC-HHHHHhhcCeEEEEeC
Q psy11928 83 VALAELTL--NAPDVIILDEPTNNLDI--ESIDALADAINEYK--GGVIIVSHD-ERLIRDTECTLWVIEN 146 (184)
Q Consensus 83 v~laral~--~~p~illlDEPt~~LD~--~~~~~l~~~l~~~~--~tiiivsHd-~~~~~~~~~~i~~l~~ 146 (184)
...|+..+ .+.++++|||-+..++. ...+.+.++|.+.. ..||++-++ ...+...+|.|-.|+.
T Consensus 104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 44455544 55799999999988775 35678888887653 479999888 4556678898877754
No 500
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=86.68 E-value=1.5 Score=37.09 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=33.1
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 136 (184)
.+|++++|=|-+|++....+.+.+ ...||+||||+..+.+
T Consensus 288 ~~D~v~lDPPR~G~~~~~l~~l~~-----~~~ivyvSC~p~tlar 327 (362)
T PRK05031 288 NFSTIFVDPPRAGLDDETLKLVQA-----YERILYISCNPETLCE 327 (362)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHc-----cCCEEEEEeCHHHHHH
Confidence 589999999999999887777654 3789999999977544
Done!