Query psy11928
Match_columns 184
No_of_seqs 200 out of 1129
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 22:34:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4E-37 1.4E-41 255.6 15.8 153 2-158 73-250 (366)
2 3tif_A Uncharacterized ABC tra 100.0 1E-36 3.4E-41 240.3 15.9 147 2-151 50-225 (235)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.6E-36 5.4E-41 251.7 17.0 155 2-160 49-227 (359)
4 3rlf_A Maltose/maltodextrin im 100.0 1.2E-36 4.2E-41 254.0 15.9 154 2-159 48-221 (381)
5 2olj_A Amino acid ABC transpor 100.0 2.5E-36 8.5E-41 241.7 16.1 154 2-159 69-246 (263)
6 2onk_A Molybdate/tungstate ABC 100.0 3.3E-36 1.1E-40 238.1 15.4 154 2-159 43-214 (240)
7 1b0u_A Histidine permease; ABC 100.0 2.9E-36 1E-40 241.2 15.2 154 2-159 51-240 (262)
8 3gfo_A Cobalt import ATP-bindi 100.0 3.2E-36 1.1E-40 242.4 15.5 155 2-159 53-231 (275)
9 1z47_A CYSA, putative ABC-tran 100.0 6.1E-36 2.1E-40 248.1 16.7 155 2-160 60-234 (355)
10 2yyz_A Sugar ABC transporter, 100.0 9.6E-36 3.3E-40 247.3 17.9 155 2-160 48-222 (359)
11 3d31_A Sulfate/molybdate ABC t 100.0 3.2E-36 1.1E-40 249.4 14.8 154 2-159 45-215 (348)
12 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-35 3.8E-40 246.7 18.0 155 2-160 50-229 (353)
13 2it1_A 362AA long hypothetical 100.0 1.2E-35 4.2E-40 246.9 15.8 155 2-160 48-222 (362)
14 4g1u_C Hemin import ATP-bindin 100.0 2.3E-35 7.8E-40 236.4 16.7 154 2-159 56-235 (266)
15 2pcj_A ABC transporter, lipopr 100.0 1.6E-35 5.4E-40 231.9 15.3 146 2-151 49-219 (224)
16 1vpl_A ABC transporter, ATP-bi 100.0 1.3E-35 4.5E-40 236.7 15.0 154 2-159 60-233 (256)
17 1v43_A Sugar-binding transport 100.0 1.8E-35 6.2E-40 246.7 16.4 155 2-160 56-230 (372)
18 1g29_1 MALK, maltose transport 100.0 2.7E-35 9.1E-40 245.9 16.5 155 2-160 48-228 (372)
19 1g6h_A High-affinity branched- 100.0 1.3E-35 4.3E-40 236.8 13.3 153 2-158 52-239 (257)
20 1ji0_A ABC transporter; ATP bi 100.0 5.8E-35 2E-39 230.9 15.6 154 2-159 51-226 (240)
21 2yz2_A Putative ABC transporte 100.0 7.8E-35 2.7E-39 233.4 15.6 155 2-159 52-225 (266)
22 2nq2_C Hypothetical ABC transp 100.0 1E-34 3.5E-39 231.2 16.1 151 2-159 50-215 (253)
23 2pjz_A Hypothetical protein ST 100.0 2.3E-34 7.7E-39 230.3 15.8 151 2-159 49-213 (263)
24 2qi9_C Vitamin B12 import ATP- 100.0 2.3E-34 7.8E-39 228.6 15.1 153 2-159 45-220 (249)
25 2ihy_A ABC transporter, ATP-bi 100.0 3.2E-35 1.1E-39 237.1 9.7 156 2-159 66-250 (279)
26 2ff7_A Alpha-hemolysin translo 100.0 1.5E-33 5.2E-38 223.6 13.9 153 2-159 54-230 (247)
27 2ixe_A Antigen peptide transpo 100.0 1.6E-33 5.6E-38 226.2 14.2 153 2-160 64-244 (271)
28 3nh6_A ATP-binding cassette SU 100.0 3.3E-33 1.1E-37 227.8 15.1 155 2-161 99-277 (306)
29 2d2e_A SUFC protein; ABC-ATPas 100.0 8E-34 2.7E-38 225.6 9.9 152 2-157 48-229 (250)
30 1mv5_A LMRA, multidrug resista 100.0 1.4E-33 4.9E-38 223.2 10.9 154 2-160 47-225 (243)
31 2zu0_C Probable ATP-dependent 100.0 3.7E-33 1.3E-37 223.7 13.3 154 2-158 65-251 (267)
32 2pze_A Cystic fibrosis transme 100.0 1.8E-32 6.2E-37 215.2 16.3 151 2-159 53-216 (229)
33 2cbz_A Multidrug resistance-as 100.0 8.9E-33 3E-37 218.0 12.5 150 2-159 50-215 (237)
34 1sgw_A Putative ABC transporte 100.0 2E-33 7E-38 218.5 8.7 143 2-149 54-210 (214)
35 2ghi_A Transport protein; mult 100.0 5.2E-32 1.8E-36 216.3 14.4 152 2-159 65-240 (260)
36 3gd7_A Fusion complex of cysti 100.0 2.7E-32 9.2E-37 228.8 10.2 152 2-160 66-241 (390)
37 2bbs_A Cystic fibrosis transme 100.0 4.2E-31 1.4E-35 214.0 15.5 150 2-159 83-245 (290)
38 3b5x_A Lipid A export ATP-bind 100.0 7.1E-31 2.4E-35 230.5 16.4 154 2-160 388-566 (582)
39 3b60_A Lipid A export ATP-bind 100.0 6.8E-31 2.3E-35 230.7 15.1 154 2-160 388-566 (582)
40 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-30 4.1E-35 227.1 15.4 153 2-160 331-492 (538)
41 2yl4_A ATP-binding cassette SU 100.0 1.1E-30 3.7E-35 229.9 14.9 153 2-159 389-568 (595)
42 4a82_A Cystic fibrosis transme 100.0 2E-30 6.9E-35 227.5 15.8 155 1-160 385-563 (578)
43 3bk7_A ABC transporter ATP-bin 100.0 1.6E-30 5.5E-35 228.9 14.7 153 2-160 401-562 (607)
44 3qf4_B Uncharacterized ABC tra 100.0 1.4E-30 4.8E-35 229.3 14.2 154 2-160 400-577 (598)
45 3qf4_A ABC transporter, ATP-bi 100.0 3.1E-30 1E-34 226.7 16.1 154 2-161 388-566 (587)
46 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-30 1.2E-34 224.1 14.4 142 2-147 313-462 (538)
47 3j16_B RLI1P; ribosome recycli 100.0 2.3E-29 7.8E-34 221.5 16.6 153 2-160 397-558 (608)
48 2iw3_A Elongation factor 3A; a 100.0 3.1E-29 1.1E-33 228.9 12.0 101 51-151 877-978 (986)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.7E-28 5.8E-33 213.6 10.1 142 2-147 66-234 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 3.5E-28 1.2E-32 214.0 11.8 143 2-148 136-305 (607)
51 3g5u_A MCG1178, multidrug resi 99.9 9.6E-28 3.3E-32 226.0 14.5 152 2-159 435-611 (1284)
52 3g5u_A MCG1178, multidrug resi 99.9 6.6E-28 2.2E-32 227.1 13.3 155 2-161 1078-1258(1284)
53 4f4c_A Multidrug resistance pr 99.9 6.5E-28 2.2E-32 227.6 12.2 155 2-161 1124-1304(1321)
54 2iw3_A Elongation factor 3A; a 99.9 8.6E-27 3E-31 212.8 17.0 139 21-161 496-635 (986)
55 4f4c_A Multidrug resistance pr 99.9 4.7E-27 1.6E-31 221.8 12.8 152 2-158 463-638 (1321)
56 3ozx_A RNAse L inhibitor; ATP 99.9 5.3E-27 1.8E-31 204.1 11.9 143 2-148 44-214 (538)
57 3j16_B RLI1P; ribosome recycli 99.9 1E-26 3.5E-31 204.6 13.4 99 50-149 198-299 (608)
58 3ux8_A Excinuclease ABC, A sub 99.9 2E-26 6.7E-31 205.2 10.9 102 56-159 184-296 (670)
59 3ux8_A Excinuclease ABC, A sub 99.9 4.5E-24 1.5E-28 190.0 13.6 105 52-158 521-637 (670)
60 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 1.6E-23 5.4E-28 153.9 10.8 79 69-148 52-141 (148)
61 3pih_A Uvrabc system protein A 99.9 3.4E-23 1.2E-27 188.7 14.3 106 52-159 783-900 (916)
62 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.1E-23 2.1E-27 171.0 11.3 80 70-150 275-363 (365)
63 3pih_A Uvrabc system protein A 99.9 1.1E-22 3.8E-27 185.3 13.6 105 54-160 444-559 (916)
64 2vf7_A UVRA2, excinuclease ABC 99.9 1.1E-22 3.7E-27 184.0 12.5 106 52-159 708-825 (842)
65 2r6f_A Excinuclease ABC subuni 99.9 4.2E-22 1.4E-26 181.2 13.4 104 53-158 824-939 (972)
66 2ygr_A Uvrabc system protein A 99.9 5.8E-22 2E-26 180.8 13.2 106 53-160 842-959 (993)
67 2npi_A Protein CLP1; CLP1-PCF1 99.9 8.2E-25 2.8E-29 187.1 -6.9 150 2-159 157-336 (460)
68 2ygr_A Uvrabc system protein A 99.9 1.3E-21 4.3E-26 178.6 11.5 103 57-161 504-617 (993)
69 2r6f_A Excinuclease ABC subuni 99.9 1.3E-21 4.5E-26 177.9 11.3 101 57-159 487-598 (972)
70 2vf7_A UVRA2, excinuclease ABC 99.8 3.9E-21 1.3E-25 173.9 11.5 102 57-160 362-474 (842)
71 4aby_A DNA repair protein RECN 99.8 8.1E-21 2.8E-25 159.7 11.6 94 75-169 296-399 (415)
72 3kta_B Chromosome segregation 99.8 4.5E-19 1.6E-23 133.2 14.1 90 70-160 60-157 (173)
73 3qkt_A DNA double-strand break 99.8 3.1E-19 1.1E-23 147.1 10.3 75 70-145 244-327 (339)
74 4ad8_A DNA repair protein RECN 99.8 2E-19 6.8E-24 155.8 9.5 77 70-147 392-473 (517)
75 1e69_A Chromosome segregation 99.8 4.4E-19 1.5E-23 145.2 10.9 80 70-150 215-302 (322)
76 1ye8_A Protein THEP1, hypothet 99.8 2.6E-19 8.8E-24 135.1 8.1 94 69-166 71-175 (178)
77 2o5v_A DNA replication and rep 99.8 1.4E-18 4.8E-23 144.3 8.7 83 69-156 259-351 (359)
78 3b85_A Phosphate starvation-in 99.7 1.2E-20 4.2E-25 145.8 -6.0 112 2-136 41-163 (208)
79 3auy_A DNA double-strand break 99.7 5.9E-17 2E-21 134.9 12.5 75 70-145 276-359 (371)
80 4gp7_A Metallophosphoesterase; 99.7 1.4E-17 4.8E-22 124.5 3.0 76 60-137 71-165 (171)
81 1w1w_A Structural maintenance 99.7 2.3E-16 7.9E-21 133.6 10.7 74 71-145 330-410 (430)
82 1tq4_A IIGP1, interferon-induc 99.6 9.4E-19 3.2E-23 147.6 -7.9 138 2-148 88-255 (413)
83 1tf7_A KAIC; homohexamer, hexa 99.5 9.2E-15 3.2E-19 126.7 3.9 86 61-148 341-444 (525)
84 3b9q_A Chloroplast SRP recepto 99.4 2.9E-15 1E-19 121.6 -2.5 136 2-149 119-284 (302)
85 3sop_A Neuronal-specific septi 99.4 1.8E-15 6.2E-20 121.0 -5.9 120 2-132 21-151 (270)
86 2og2_A Putative signal recogni 99.4 2.9E-14 9.8E-19 118.3 -1.2 136 2-149 176-341 (359)
87 2pt7_A CAG-ALFA; ATPase, prote 99.3 1.1E-12 3.7E-17 107.7 3.6 67 77-148 225-291 (330)
88 3aez_A Pantothenate kinase; tr 99.3 4E-14 1.4E-18 115.4 -6.8 118 20-147 121-245 (312)
89 3thx_A DNA mismatch repair pro 99.2 1.9E-11 6.3E-16 112.1 7.5 90 56-150 707-803 (934)
90 3thx_B DNA mismatch repair pro 99.2 1.5E-11 5E-16 112.5 6.3 78 56-135 718-800 (918)
91 2o8b_B DNA mismatch repair pro 99.2 4.4E-11 1.5E-15 110.7 8.0 90 58-150 836-930 (1022)
92 1cr0_A DNA primase/helicase; R 99.2 7.8E-11 2.7E-15 94.6 8.5 78 71-149 126-237 (296)
93 1znw_A Guanylate kinase, GMP k 99.1 3.9E-13 1.3E-17 102.9 -7.2 76 58-145 119-202 (207)
94 2dpy_A FLII, flagellum-specifi 99.1 7.9E-12 2.7E-16 106.2 -1.3 127 2-151 176-335 (438)
95 2i3b_A HCR-ntpase, human cance 99.1 4.3E-12 1.5E-16 96.3 -3.1 94 71-168 80-185 (189)
96 2w0m_A SSO2452; RECA, SSPF, un 99.0 4.4E-10 1.5E-14 86.1 7.0 74 74-147 103-192 (235)
97 1ewq_A DNA mismatch repair pro 99.0 3.7E-10 1.3E-14 101.7 6.2 64 72-135 633-702 (765)
98 1nlf_A Regulatory protein REPA 99.0 7.8E-10 2.7E-14 88.1 6.4 83 49-135 94-185 (279)
99 2ehv_A Hypothetical protein PH 98.9 6.5E-10 2.2E-14 86.3 4.6 70 76-145 119-206 (251)
100 2v9p_A Replication protein E1; 98.9 1.1E-11 3.8E-16 100.6 -6.5 82 53-159 183-264 (305)
101 2cvh_A DNA repair and recombin 98.9 8.8E-09 3E-13 78.4 9.2 77 71-147 81-185 (220)
102 1tf7_A KAIC; homohexamer, hexa 98.8 9E-10 3.1E-14 95.4 1.1 56 91-146 137-209 (525)
103 4a74_A DNA repair and recombin 98.8 5.3E-09 1.8E-13 80.1 4.9 74 74-147 99-200 (231)
104 1z6g_A Guanylate kinase; struc 98.7 2.9E-11 1E-15 93.4 -9.2 87 51-142 104-205 (218)
105 2eyu_A Twitching motility prot 98.7 4.9E-09 1.7E-13 83.2 3.3 56 82-142 88-143 (261)
106 1rj9_A FTSY, signal recognitio 98.6 1.5E-09 5E-14 88.1 -2.3 119 2-133 121-260 (304)
107 1wb9_A DNA mismatch repair pro 98.6 1.6E-08 5.6E-13 91.5 4.0 76 71-148 666-746 (800)
108 2obl_A ESCN; ATPase, hydrolase 98.6 1.7E-09 5.8E-14 89.2 -2.2 69 71-151 168-246 (347)
109 3asz_A Uridine kinase; cytidin 98.6 5.5E-11 1.9E-15 90.7 -10.6 110 22-132 34-162 (211)
110 3szr_A Interferon-induced GTP- 98.6 1.4E-09 4.8E-14 95.8 -3.8 107 2-133 64-198 (608)
111 2jeo_A Uridine-cytidine kinase 98.6 2.8E-08 9.6E-13 77.6 3.3 108 20-141 59-176 (245)
112 3jvv_A Twitching mobility prot 98.5 3.2E-08 1.1E-12 81.8 2.5 56 84-144 188-243 (356)
113 2qnr_A Septin-2, protein NEDD5 98.4 6.2E-09 2.1E-13 84.2 -3.7 58 70-132 109-168 (301)
114 1pzn_A RAD51, DNA repair and r 98.4 2E-07 6.7E-12 76.9 4.9 60 76-135 208-290 (349)
115 1pui_A ENGB, probable GTP-bind 98.4 1.8E-07 6.3E-12 70.4 4.2 67 53-120 128-196 (210)
116 1n0w_A DNA repair protein RAD5 98.1 1.4E-05 4.7E-10 61.3 8.8 75 73-147 97-209 (243)
117 3ec2_A DNA replication protein 97.8 4.4E-05 1.5E-09 56.2 6.5 43 89-131 97-143 (180)
118 2ewv_A Twitching motility prot 97.7 2.2E-05 7.7E-10 65.0 4.4 54 82-140 199-252 (372)
119 1sxj_E Activator 1 40 kDa subu 97.7 2.8E-05 9.6E-10 63.1 4.7 44 89-133 131-176 (354)
120 2qag_C Septin-7; cell cycle, c 97.6 7.9E-06 2.7E-10 68.8 -0.1 57 74-132 118-178 (418)
121 2bdt_A BH3686; alpha-beta prot 97.6 1.9E-07 6.5E-12 69.7 -9.6 80 72-158 90-181 (189)
122 3lda_A DNA repair protein RAD5 97.6 0.00029 9.8E-09 59.0 8.7 57 91-147 272-363 (400)
123 2kjq_A DNAA-related protein; s 97.4 0.00015 5.2E-09 52.2 4.5 42 88-130 79-124 (149)
124 2bbw_A Adenylate kinase 4, AK4 97.4 7.3E-06 2.5E-10 63.7 -3.0 45 69-120 147-196 (246)
125 1lw7_A Transcriptional regulat 97.4 1.9E-05 6.5E-10 65.1 -0.7 73 71-144 255-341 (365)
126 1nij_A Hypothetical protein YJ 97.3 1.5E-05 5.1E-10 64.6 -1.9 65 58-135 127-193 (318)
127 1odf_A YGR205W, hypothetical 3 97.3 4.4E-06 1.5E-10 67.1 -5.5 38 71-108 131-168 (290)
128 3euj_A Chromosome partition pr 97.2 0.00071 2.4E-08 57.9 7.2 71 71-144 376-463 (483)
129 2r6a_A DNAB helicase, replicat 97.1 0.0019 6.4E-08 54.6 8.4 76 71-148 292-400 (454)
130 2rcn_A Probable GTPase ENGC; Y 97.0 0.00016 5.6E-09 59.6 1.0 83 2-90 234-329 (358)
131 1udx_A The GTP-binding protein 97.0 0.00024 8.1E-09 59.8 1.8 64 57-128 239-305 (416)
132 2dr3_A UPF0273 protein PH0284; 97.0 0.0027 9.1E-08 48.4 7.6 56 91-146 127-196 (247)
133 1s96_A Guanylate kinase, GMP k 96.9 0.0014 4.9E-08 50.2 5.7 45 86-136 101-145 (219)
134 2xau_A PRE-mRNA-splicing facto 96.7 0.00058 2E-08 61.7 2.7 70 71-140 187-261 (773)
135 2zr9_A Protein RECA, recombina 96.7 0.0059 2E-07 50.0 7.9 67 81-147 126-230 (349)
136 1zp6_A Hypothetical protein AT 96.5 0.00024 8.1E-09 52.5 -1.2 42 71-120 106-147 (191)
137 2gza_A Type IV secretion syste 96.5 0.0012 4.1E-08 54.3 2.8 67 76-147 236-302 (361)
138 3e70_C DPA, signal recognition 96.2 0.00027 9.1E-09 57.6 -2.6 131 2-149 148-306 (328)
139 2ce7_A Cell division protein F 95.9 0.0091 3.1E-07 51.0 5.3 59 77-135 93-168 (476)
140 2f1r_A Molybdopterin-guanine d 95.6 0.00013 4.5E-09 53.9 -6.4 24 73-96 102-125 (171)
141 1ls1_A Signal recognition part 95.6 0.033 1.1E-06 44.3 7.2 52 77-128 165-219 (295)
142 1ni3_A YCHF GTPase, YCHF GTP-b 95.6 4.7E-05 1.6E-09 63.6 -10.0 80 71-165 130-217 (392)
143 2ius_A DNA translocase FTSK; n 95.6 0.00044 1.5E-08 59.6 -4.3 87 56-143 248-361 (512)
144 1p9r_A General secretion pathw 95.4 5.7E-05 1.9E-09 63.6 -10.1 41 53-98 275-315 (418)
145 2px0_A Flagellar biosynthesis 95.3 0.023 8E-07 45.3 5.2 67 80-150 172-245 (296)
146 2yv5_A YJEQ protein; hydrolase 95.3 0.00044 1.5E-08 55.5 -5.0 83 3-87 185-300 (302)
147 1vma_A Cell division protein F 95.2 0.011 3.9E-07 47.5 3.2 43 55-103 152-197 (306)
148 2e87_A Hypothetical protein PH 95.1 0.034 1.1E-06 45.3 5.9 61 71-132 228-293 (357)
149 1lw7_A Transcriptional regulat 94.7 0.0071 2.4E-07 49.5 0.6 29 74-102 296-329 (365)
150 4a1f_A DNAB helicase, replicat 94.7 0.052 1.8E-06 44.2 5.7 54 73-128 108-163 (338)
151 1jcn_A Inosine monophosphate d 93.9 0.00033 1.1E-08 60.3 -9.3 72 87-161 28-102 (514)
152 2yhs_A FTSY, cell division pro 93.2 0.006 2.1E-07 52.4 -2.6 115 2-129 312-447 (503)
153 1oix_A RAS-related protein RAB 92.8 0.057 1.9E-06 39.5 2.5 37 81-119 152-188 (191)
154 1g5t_A COB(I)alamin adenosyltr 92.3 0.16 5.4E-06 38.2 4.4 65 82-146 108-179 (196)
155 2z4s_A Chromosomal replication 92.0 0.077 2.6E-06 44.6 2.6 41 91-131 193-237 (440)
156 2oap_1 GSPE-2, type II secreti 91.8 0.00015 5E-09 62.6 -14.5 56 72-139 398-458 (511)
157 1fnn_A CDC6P, cell division co 90.9 0.38 1.3E-05 38.7 5.7 47 91-138 124-176 (389)
158 2qm8_A GTPase/ATPase; G protei 90.9 0.08 2.7E-06 42.9 1.6 44 73-120 209-258 (337)
159 3c8u_A Fructokinase; YP_612366 90.8 0.0019 6.4E-08 48.6 -7.7 58 72-140 109-168 (208)
160 1u0l_A Probable GTPase ENGC; p 90.2 0.008 2.7E-07 48.0 -4.9 75 2-77 188-294 (301)
161 2x8a_A Nuclear valosin-contain 90.1 0.0022 7.4E-08 50.7 -8.2 48 70-119 133-192 (274)
162 3b9p_A CG5977-PA, isoform A; A 89.4 0.89 3.1E-05 35.3 6.6 57 76-132 97-170 (297)
163 2qag_B Septin-6, protein NEDD5 89.3 0.17 5.7E-06 42.6 2.3 55 74-131 161-219 (427)
164 2f9l_A RAB11B, member RAS onco 88.1 0.27 9.2E-06 35.9 2.5 35 83-119 130-164 (199)
165 2qtf_A Protein HFLX, GTP-bindi 88.1 0.26 8.9E-06 40.4 2.6 60 55-119 282-350 (364)
166 3k1j_A LON protease, ATP-depen 88.0 0.13 4.6E-06 44.8 0.9 47 72-119 181-227 (604)
167 3bh0_A DNAB-like replicative h 87.6 0.54 1.8E-05 37.5 4.2 53 75-129 134-189 (315)
168 1jjv_A Dephospho-COA kinase; P 87.4 0.078 2.7E-06 39.2 -0.8 69 76-146 61-132 (206)
169 1lvg_A Guanylate kinase, GMP k 87.3 0.0023 7.9E-08 47.9 -9.4 55 85-144 116-171 (198)
170 1in4_A RUVB, holliday junction 84.6 0.013 4.5E-07 47.3 -6.9 68 54-140 144-211 (334)
171 2qby_A CDC6 homolog 1, cell di 83.9 0.38 1.3E-05 38.5 1.5 45 92-136 128-178 (386)
172 2z43_A DNA repair and recombin 81.9 1.9 6.6E-05 34.3 5.0 52 81-132 189-259 (324)
173 2eyu_A Twitching motility prot 79.2 0.0051 1.7E-07 48.3 -10.9 34 73-108 171-206 (261)
174 1u94_A RECA protein, recombina 77.5 6.4 0.00022 31.9 6.8 51 81-131 128-200 (356)
175 1t9h_A YLOQ, probable GTPase E 76.2 0.29 1E-05 39.2 -1.5 79 2-82 192-303 (307)
176 1njg_A DNA polymerase III subu 76.1 3.1 0.0001 30.3 4.3 41 92-133 126-168 (250)
177 2b8t_A Thymidine kinase; deoxy 76.0 6.3 0.00021 29.8 6.0 51 92-144 89-149 (223)
178 2ewv_A Twitching motility prot 74.1 0.0087 3E-07 49.4 -11.4 33 74-108 283-317 (372)
179 2orv_A Thymidine kinase; TP4A 73.9 6.8 0.00023 30.0 5.7 51 91-144 89-149 (234)
180 1sxj_D Activator 1 41 kDa subu 72.6 3.8 0.00013 32.2 4.2 41 92-133 133-175 (353)
181 1xx6_A Thymidine kinase; NESG, 69.4 13 0.00043 27.3 6.2 53 91-145 80-142 (191)
182 3szr_A Interferon-induced GTP- 66.7 3.7 0.00013 35.8 3.2 58 72-129 162-223 (608)
183 1v5w_A DMC1, meiotic recombina 65.8 7 0.00024 31.3 4.5 52 81-132 204-275 (343)
184 4ag6_A VIRB4 ATPase, type IV s 64.5 6.5 0.00022 31.8 4.1 45 91-135 261-311 (392)
185 3tsm_A IGPS, indole-3-glycerol 62.1 33 0.0011 26.7 7.6 52 84-137 134-185 (272)
186 1l8q_A Chromosomal replication 61.9 9.3 0.00032 29.9 4.5 40 90-129 96-139 (324)
187 1iy2_A ATP-dependent metallopr 59.0 0.066 2.3E-06 41.7 -8.6 29 71-101 166-194 (278)
188 3bt7_A TRNA (uracil-5-)-methyl 58.7 13 0.00043 30.0 4.8 39 92-135 295-333 (369)
189 2dy1_A Elongation factor G; tr 56.8 16 0.00055 32.1 5.5 44 88-133 95-138 (665)
190 2chg_A Replication factor C sm 56.3 15 0.00052 26.0 4.5 41 91-132 101-143 (226)
191 2r8r_A Sensor protein; KDPD, P 55.7 16 0.00053 27.9 4.5 45 85-129 77-125 (228)
192 3bos_A Putative DNA replicatio 55.2 7.9 0.00027 28.3 2.8 40 90-130 102-147 (242)
193 3t34_A Dynamin-related protein 54.6 13 0.00044 29.7 4.2 56 73-129 153-212 (360)
194 3hr8_A Protein RECA; alpha and 54.6 83 0.0028 25.3 9.9 66 81-146 126-229 (356)
195 3lxx_A GTPase IMAP family memb 54.2 19 0.00065 26.6 4.9 40 90-129 110-154 (239)
196 1xp8_A RECA protein, recombina 54.2 43 0.0015 27.1 7.3 51 81-131 139-211 (366)
197 2j9r_A Thymidine kinase; TK1, 53.8 27 0.00092 26.2 5.6 52 92-145 101-162 (214)
198 2q6t_A DNAB replication FORK h 52.7 25 0.00085 29.1 5.8 54 73-128 263-317 (444)
199 2q6t_A DNAB replication FORK h 52.7 51 0.0017 27.1 7.7 71 73-145 291-396 (444)
200 4fcw_A Chaperone protein CLPB; 52.2 19 0.00063 27.6 4.7 35 84-119 110-145 (311)
201 3h4m_A Proteasome-activating n 51.6 11 0.00037 28.7 3.2 52 83-134 101-169 (285)
202 1e9r_A Conjugal transfer prote 51.4 6.7 0.00023 32.2 2.0 45 92-136 279-323 (437)
203 1jr3_A DNA polymerase III subu 48.9 18 0.00061 28.5 4.2 41 91-132 118-160 (373)
204 2w58_A DNAI, primosome compone 48.5 11 0.00036 27.1 2.6 47 90-136 113-165 (202)
205 1ixz_A ATP-dependent metallopr 48.2 0.13 4.4E-06 39.4 -8.5 31 71-103 142-172 (254)
206 3qja_A IGPS, indole-3-glycerol 47.6 51 0.0017 25.5 6.5 50 85-136 128-177 (272)
207 3kl4_A SRP54, signal recogniti 46.0 33 0.0011 28.6 5.4 37 83-119 170-209 (433)
208 3cf0_A Transitional endoplasmi 45.7 37 0.0013 26.2 5.5 54 82-135 98-168 (301)
209 2qgz_A Helicase loader, putati 45.1 9.5 0.00032 30.0 1.9 47 90-136 212-264 (308)
210 1jql_B DNA polymerase III, del 43.8 24 0.00082 24.1 3.7 41 89-129 73-114 (140)
211 1sfl_A 3-dehydroquinate dehydr 42.3 67 0.0023 24.2 6.3 58 72-130 75-134 (238)
212 1jr3_D DNA polymerase III, del 41.9 33 0.0011 26.9 4.7 44 87-130 71-116 (343)
213 1ega_A Protein (GTP-binding pr 40.5 8.7 0.0003 30.1 1.0 61 74-141 100-169 (301)
214 2jjq_A Uncharacterized RNA met 40.4 69 0.0024 26.4 6.6 42 92-136 353-394 (425)
215 4a29_A Engineered retro-aldol 40.1 50 0.0017 25.6 5.2 61 84-146 118-181 (258)
216 3lnc_A Guanylate kinase, GMP k 39.8 0.6 2E-05 35.1 -5.7 54 89-142 145-206 (231)
217 3bgw_A DNAB-like replicative h 39.1 54 0.0019 27.2 5.7 52 75-128 263-317 (444)
218 1i4n_A Indole-3-glycerol phosp 37.8 1.1E+02 0.0037 23.4 6.9 60 85-146 116-179 (251)
219 1b9m_A Protein (mode); DNA-bin 37.8 3.4 0.00012 31.6 -1.8 39 54-94 55-93 (265)
220 3co5_A Putative two-component 37.4 69 0.0024 21.5 5.3 37 92-129 75-114 (143)
221 1qvr_A CLPB protein; coiled co 35.6 33 0.0011 30.9 4.1 28 91-119 659-686 (854)
222 1ne7_A Glucosamine-6-phosphate 34.9 14 0.00046 28.9 1.3 47 71-117 198-259 (289)
223 1iqp_A RFCS; clamp loader, ext 34.5 47 0.0016 25.3 4.5 41 91-132 109-151 (327)
224 3d8b_A Fidgetin-like protein 1 34.5 52 0.0018 26.1 4.8 21 81-101 165-185 (357)
225 3f6c_A Positive transcription 34.2 90 0.0031 19.8 5.5 38 90-130 44-83 (134)
226 2orw_A Thymidine kinase; TMTK, 34.1 18 0.00061 26.0 1.8 53 91-145 75-137 (184)
227 3v2d_F 50S ribosomal protein L 33.7 97 0.0033 23.1 5.8 53 81-135 106-165 (210)
228 3q58_A N-acetylmannosamine-6-p 33.0 92 0.0032 23.3 5.7 51 86-137 95-145 (229)
229 4dcu_A GTP-binding protein ENG 32.7 42 0.0014 27.7 4.1 56 79-134 89-144 (456)
230 2ftc_D Mitochondrial ribosomal 32.3 99 0.0034 22.3 5.5 47 81-129 74-125 (175)
231 1pii_A N-(5'phosphoribosyl)ant 32.3 1.9E+02 0.0064 24.2 7.9 60 85-146 123-185 (452)
232 3htu_A Vacuolar protein-sortin 32.3 69 0.0024 20.0 4.1 31 98-128 40-70 (79)
233 3igs_A N-acetylmannosamine-6-p 31.7 99 0.0034 23.1 5.7 51 86-137 95-145 (232)
234 3u61_B DNA polymerase accessor 31.4 50 0.0017 25.5 4.1 40 92-132 105-147 (324)
235 1tmy_A CHEY protein, TMY; chem 31.2 95 0.0033 19.2 5.5 38 90-130 45-85 (120)
236 1sxj_B Activator 1 37 kDa subu 30.9 41 0.0014 25.6 3.5 40 92-132 107-148 (323)
237 3llm_A ATP-dependent RNA helic 29.6 1E+02 0.0036 22.4 5.5 58 76-135 162-224 (235)
238 1ypw_A Transitional endoplasmi 29.4 42 0.0014 30.2 3.7 55 82-136 287-355 (806)
239 3a10_A Response regulator; pho 28.9 1E+02 0.0035 18.9 6.2 38 90-130 43-83 (116)
240 1w4r_A Thymidine kinase; type 28.8 62 0.0021 23.8 4.0 52 90-144 89-150 (195)
241 3cu5_A Two component transcrip 28.7 1.2E+02 0.0041 19.6 5.7 38 90-130 47-86 (141)
242 2jk1_A HUPR, hydrogenase trans 28.6 1.2E+02 0.004 19.5 5.4 38 90-130 42-82 (139)
243 2i1q_A DNA repair and recombin 28.5 41 0.0014 26.2 3.1 64 83-146 192-290 (322)
244 1mvo_A PHOP response regulator 28.5 1.2E+02 0.0039 19.3 5.9 38 90-130 45-85 (136)
245 2qz4_A Paraplegin; AAA+, SPG7, 28.4 87 0.003 22.9 4.9 21 83-103 89-109 (262)
246 2rjn_A Response regulator rece 28.4 1.3E+02 0.0043 19.7 5.8 37 90-129 49-87 (154)
247 1ojl_A Transcriptional regulat 28.4 1.1E+02 0.0038 23.6 5.7 38 92-130 96-146 (304)
248 3n70_A Transport activator; si 28.0 69 0.0024 21.5 4.0 37 92-129 76-114 (145)
249 4e7p_A Response regulator; DNA 27.9 1.3E+02 0.0044 19.7 5.6 53 72-130 49-104 (150)
250 1a5t_A Delta prime, HOLB; zinc 27.7 52 0.0018 25.8 3.7 41 91-132 107-149 (334)
251 1srr_A SPO0F, sporulation resp 27.6 1.1E+02 0.0039 19.0 6.3 37 90-129 45-83 (124)
252 3eul_A Possible nitrate/nitrit 27.6 1.3E+02 0.0045 19.6 5.7 38 90-130 59-99 (152)
253 1dbw_A Transcriptional regulat 27.1 1.2E+02 0.0041 19.0 5.3 38 90-130 45-85 (126)
254 3syl_A Protein CBBX; photosynt 27.1 2E+02 0.0068 21.6 7.4 39 92-130 130-178 (309)
255 2gno_A DNA polymerase III, gam 26.6 48 0.0017 25.9 3.2 41 92-133 82-124 (305)
256 2v1u_A Cell division control p 26.6 41 0.0014 26.3 2.8 41 92-132 130-178 (387)
257 2p65_A Hypothetical protein PF 26.4 25 0.00084 24.2 1.4 42 91-132 114-163 (187)
258 1q57_A DNA primase/helicase; d 26.3 1.9E+02 0.0065 24.0 7.1 48 83-131 343-404 (503)
259 2z83_A Helicase/nucleoside tri 26.2 37 0.0013 28.1 2.6 67 73-140 2-69 (459)
260 4b4t_I 26S protease regulatory 26.1 73 0.0025 26.6 4.3 56 81-136 264-336 (437)
261 3crn_A Response regulator rece 25.6 1.3E+02 0.0045 19.0 5.8 38 90-130 45-85 (132)
262 4b4t_L 26S protease subunit RP 25.6 1.9E+02 0.0065 23.9 6.8 56 81-136 263-335 (437)
263 3hot_A Transposable element ma 25.4 71 0.0024 24.8 4.1 57 48-104 97-161 (345)
264 3eod_A Protein HNR; response r 25.4 1.1E+02 0.0038 19.2 4.6 39 89-130 48-89 (130)
265 1svm_A Large T antigen; AAA+ f 25.3 1.1 3.9E-05 36.8 -6.8 34 70-103 278-312 (377)
266 3b2n_A Uncharacterized protein 25.0 1.4E+02 0.0047 19.0 5.6 37 90-129 47-85 (133)
267 3k7i_B IHH, HHG-2, indian hedg 24.9 20 0.00067 26.3 0.6 27 90-116 69-95 (187)
268 3i42_A Response regulator rece 24.8 1.3E+02 0.0045 18.8 5.0 37 90-129 45-85 (127)
269 1jbk_A CLPB protein; beta barr 24.4 30 0.001 23.7 1.5 42 91-132 114-162 (195)
270 1fs5_A Glucosamine-6-phosphate 24.3 23 0.0008 27.0 1.0 41 71-111 198-253 (266)
271 1sxj_A Activator 1 95 kDa subu 23.5 72 0.0025 26.8 3.9 42 91-132 147-190 (516)
272 1dmg_A Ribosomal protein L4; a 23.4 1.3E+02 0.0043 22.7 4.9 57 72-130 93-158 (225)
273 2qxy_A Response regulator; reg 23.3 1.3E+02 0.0046 19.2 4.7 35 90-128 46-82 (142)
274 1qkk_A DCTD, C4-dicarboxylate 23.2 1.6E+02 0.0055 19.2 5.3 35 91-128 46-82 (155)
275 3g40_A Na-K-CL cotransporter; 23.0 2.7E+02 0.0092 21.9 6.8 75 54-131 71-149 (294)
276 3io5_A Recombination and repai 23.0 2.9E+02 0.01 22.1 8.4 74 57-132 74-173 (333)
277 2bjv_A PSP operon transcriptio 22.9 1.3E+02 0.0045 22.2 5.1 38 92-130 100-150 (265)
278 3m6y_A 4-hydroxy-2-oxoglutarat 22.5 15 0.00051 28.4 -0.5 65 52-122 171-236 (275)
279 4h3d_A 3-dehydroquinate dehydr 22.3 81 0.0028 24.1 3.7 58 71-131 90-149 (258)
280 4a8j_C Elongator complex prote 22.2 1E+02 0.0035 24.1 4.2 42 91-132 148-197 (280)
281 3hzh_A Chemotaxis response reg 22.0 1.8E+02 0.006 19.2 6.0 36 92-130 83-121 (157)
282 1i1q_B Anthranilate synthase c 22.0 2E+02 0.007 20.2 5.8 33 93-130 1-33 (192)
283 2okg_A Central glycolytic gene 21.8 14 0.00049 28.2 -0.8 32 72-103 216-248 (255)
284 3r8n_M 30S ribosomal protein S 21.6 1.9E+02 0.0064 19.3 5.4 49 33-84 8-56 (114)
285 1hqc_A RUVB; extended AAA-ATPa 21.4 1.7E+02 0.0057 22.2 5.5 29 91-120 89-117 (324)
286 2rdm_A Response regulator rece 21.1 1.6E+02 0.0055 18.4 6.8 36 92-130 50-89 (132)
287 3hdg_A Uncharacterized protein 20.9 1.5E+02 0.005 18.8 4.5 37 90-129 49-87 (137)
288 2qr3_A Two-component system re 20.9 1.7E+02 0.0058 18.5 5.4 14 90-103 45-58 (140)
289 3hjg_A Putative alpha-ribazole 20.8 29 0.00099 25.4 0.8 17 115-131 135-151 (213)
290 3rht_A (gatase1)-like protein; 20.8 1.4E+02 0.0048 22.9 4.8 66 52-128 20-86 (259)
291 3cz5_A Two-component response 20.8 1.8E+02 0.0062 18.9 6.6 38 90-130 49-89 (153)
292 4b4t_J 26S protease regulatory 20.8 1.7E+02 0.0057 24.1 5.5 54 82-135 231-301 (405)
293 1vrd_A Inosine-5'-monophosphat 20.7 1.9 6.5E-05 36.5 -6.5 43 90-134 17-60 (494)
294 3kyj_B CHEY6 protein, putative 20.6 1.7E+02 0.0056 18.9 4.7 41 91-136 12-53 (145)
295 1d2n_A N-ethylmaleimide-sensit 20.5 2.5E+02 0.0085 20.7 6.2 53 84-136 116-182 (272)
296 4b4t_K 26S protease regulatory 20.4 1.7E+02 0.0057 24.2 5.5 54 82-135 255-325 (428)
297 3lxw_A GTPase IMAP family memb 20.4 1.3E+02 0.0045 22.2 4.6 55 78-133 88-151 (247)
298 3hv2_A Response regulator/HD d 20.2 1.9E+02 0.0065 18.8 5.9 37 90-129 56-94 (153)
299 3jte_A Response regulator rece 20.2 1.8E+02 0.0061 18.5 6.5 38 90-130 47-87 (143)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4e-37 Score=255.62 Aligned_cols=153 Identities=24% Similarity=0.339 Sum_probs=127.1
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~ 60 (184)
.|+|+++|++|+|.+++ ++.|||+||++. +.+..|+.+++.. ..+.+. +++.++++.
T Consensus 73 ~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~ 150 (366)
T 3tui_C 73 CVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL 150 (366)
T ss_dssp HHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 58899999999998764 246999999974 4455566665432 233332 457789999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~ 136 (184)
+|+.+..+ +++++|||||||||+|||||+.+|++|||||||++||+.++..++++|++. +.|||+||||++++..
T Consensus 151 vgL~~~~~-~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 151 VGLGDKHD-SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HTCGGGTT-CCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred cCCchHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 99987665 589999999999999999999999999999999999999999999988653 7899999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
+||++++|++|++++ .|+..+
T Consensus 230 ~aDrv~vl~~G~iv~-~g~~~e 250 (366)
T 3tui_C 230 ICDCVAVISNGELIE-QDTVSE 250 (366)
T ss_dssp HCSEEEEEETTEEEE-CCBHHH
T ss_pred hCCEEEEEECCEEEE-EcCHHH
Confidence 999999999999976 555433
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1e-36 Score=240.29 Aligned_cols=147 Identities=24% Similarity=0.304 Sum_probs=120.8
Q ss_pred cccCcccCCceeEEecCC---------------eEEEEEecCCCCCCCccCCHHHHHHHh---c---CCC----HHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNHR---------------LRIGRFDQHSGEHLTAEETPAEYLQRL---F---NLP----YEKARK 56 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~---------------~~ig~v~q~~~~~l~~~~~~~~~~~~~---~---~~~----~~~~~~ 56 (184)
+|+|+++|++|+|.+++. ..+||+||++. +.+..|+.+++... . ... .+++.+
T Consensus 50 ~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 127 (235)
T 3tif_A 50 IIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127 (235)
T ss_dssp HHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc--cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHH
Confidence 589999999999987641 25999999974 44556666655321 1 222 234678
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDER 132 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~ 132 (184)
+++.+++.+...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+.++ +.|||+||||++
T Consensus 128 ~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 128 CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 8999999765434689999999999999999999999999999999999999999999988653 789999999999
Q ss_pred HHHhhcCeEEEEeCCeEEE
Q psy11928 133 LIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~ 151 (184)
.+ .+||++++|++|+++.
T Consensus 208 ~~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 208 VA-RFGERIIYLKDGEVER 225 (235)
T ss_dssp HH-TTSSEEEEEETTEEEE
T ss_pred HH-HhCCEEEEEECCEEEE
Confidence 65 7899999999999975
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.6e-36 Score=251.72 Aligned_cols=155 Identities=23% Similarity=0.235 Sum_probs=128.6
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCC----HHHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLP----YEKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~----~~~~~~~l~~~ 61 (184)
+|+|+++|++|+|.+++ ++.|||+||++. +.+..|+.+++.... +.. .+++.++++.+
T Consensus 49 ~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~--l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~ 126 (359)
T 3fvq_A 49 CLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGV--LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT 126 (359)
T ss_dssp HHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCC--CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCc--CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc
Confidence 58999999999998653 246999999974 566777777765421 111 24678899999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhh
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~ 137 (184)
|+++..+ +++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.+. +.+.|+|+||||++++..+
T Consensus 127 gL~~~~~-r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~ 205 (359)
T 3fvq_A 127 GISELAG-RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY 205 (359)
T ss_dssp TCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred CCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 9987665 5899999999999999999999999999999999999999998887553 4578999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||+|++|++|+++. .++++++.
T Consensus 206 aDri~vl~~G~i~~-~g~~~el~ 227 (359)
T 3fvq_A 206 ADRIAVMKQGRILQ-TASPHELY 227 (359)
T ss_dssp CSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEEEECCEEEE-EeCHHHHH
Confidence 99999999999975 55655543
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.2e-36 Score=253.99 Aligned_cols=154 Identities=23% Similarity=0.232 Sum_probs=128.5
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ ++.|||+||++. +.+..|+.+++.. ..+.+. +++.++++.+|+++
T Consensus 48 ~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~--l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 125 (381)
T 3rlf_A 48 MIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA--LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH 125 (381)
T ss_dssp HHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCC--CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred HHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCc--CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 58999999999998764 356999999974 5556666665432 223332 45778999999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .+.|+|+||||++++..+||+|
T Consensus 126 ~~~-r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri 204 (381)
T 3rlf_A 126 LLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI 204 (381)
T ss_dssp GTT-CCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEE
T ss_pred hhc-CChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEE
Confidence 665 58999999999999999999999999999999999999999999888864 3789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|+++. .+++.++
T Consensus 205 ~vl~~G~i~~-~g~~~~l 221 (381)
T 3rlf_A 205 VVLDAGRVAQ-VGKPLEL 221 (381)
T ss_dssp EEEETTEEEE-EECHHHH
T ss_pred EEEECCEEEE-EeCHHHH
Confidence 9999999976 5555554
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.5e-36 Score=241.66 Aligned_cols=154 Identities=25% Similarity=0.348 Sum_probs=126.3
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +....|+.+++.. ..+.. .+++.++++.
T Consensus 69 ~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (263)
T 2olj_A 69 CLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDK 146 (263)
T ss_dssp HHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 58999999999998754 124999999874 4445566665432 12322 2356788999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 137 (184)
+|+++..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+
T Consensus 147 ~~L~~~~~-~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~ 225 (263)
T 2olj_A 147 VGLKDKAH-AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV 225 (263)
T ss_dssp TTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCchHhc-CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence 99986665 589999999999999999999999999999999999999999999998654 68999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|+++. .++.+++
T Consensus 226 ~d~v~~l~~G~i~~-~g~~~~~ 246 (263)
T 2olj_A 226 GDRVLFMDGGYIIE-EGKPEDL 246 (263)
T ss_dssp CSEEEEEETTEEEE-EECHHHH
T ss_pred CCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999975 4555544
No 6
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-36 Score=238.07 Aligned_cols=154 Identities=24% Similarity=0.301 Sum_probs=127.6
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhcCC-----CHHHHHHHHhhCCCCccc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNL-----PYEKARKQLGTFGLAGHA 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~ 67 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +....|+.+++...... ..+++.++++.+|+.+..
T Consensus 43 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 120 (240)
T 2onk_A 43 LIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL 120 (240)
T ss_dssp HHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT
T ss_pred HHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh
Confidence 58999999999998754 346999999874 44556777766432111 134577899999998766
Q ss_pred ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEE
Q psy11928 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
+ +++++|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||++++..+||++++
T Consensus 121 ~-~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~ 199 (240)
T 2onk_A 121 D-RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV 199 (240)
T ss_dssp T-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE
T ss_pred c-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5 589999999999999999999999999999999999999999999988653 68999999999999999999999
Q ss_pred EeCCeEEEecCChhHH
Q psy11928 144 IENQTIEEIDGDFDDY 159 (184)
Q Consensus 144 l~~g~i~~~~~~~~~~ 159 (184)
|++|+++. .++.++.
T Consensus 200 l~~G~i~~-~g~~~~~ 214 (240)
T 2onk_A 200 MLNGRIVE-KGKLKEL 214 (240)
T ss_dssp EETTEEEE-EECHHHH
T ss_pred EECCEEEE-ECCHHHH
Confidence 99999975 4555544
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-36 Score=241.17 Aligned_cols=154 Identities=27% Similarity=0.394 Sum_probs=125.7
Q ss_pred cccCcccCCceeEEecC------------------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC---
Q psy11928 2 YAHCDLQPQQGELKKNH------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP--- 50 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~--- 50 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +....|+.+++.. ..+..
T Consensus 51 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~ 128 (262)
T 1b0u_A 51 CINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKHD 128 (262)
T ss_dssp HHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCCHHH
T ss_pred HHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcc--cCCCCcHHHHHHhhHHHhcCCCHHH
Confidence 58999999999998754 124999999864 4445566665432 12222
Q ss_pred -HHHHHHHHhhCCCCcc-cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928 51 -YEKARKQLGTFGLAGH-AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVI 125 (184)
Q Consensus 51 -~~~~~~~l~~~~l~~~-~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tii 125 (184)
.+++.++++.+|+.+. .+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++. +.|||
T Consensus 129 ~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi 207 (262)
T 1b0u_A 129 ARERALKYLAKVGIDERAQG-KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207 (262)
T ss_dssp HHHHHHHHHHHTTCCHHHHT-SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHcCCCchhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 2357789999999866 54 589999999999999999999999999999999999999999999988654 68999
Q ss_pred EEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 126 ivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
+||||++++..+||++++|++|+++. .++.+++
T Consensus 208 ~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 240 (262)
T 1b0u_A 208 VVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV 240 (262)
T ss_dssp EECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999975 4555443
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.2e-36 Score=242.43 Aligned_cols=155 Identities=25% Similarity=0.307 Sum_probs=126.7
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhC
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTF 61 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~ 61 (184)
+|+|+++|++|+|.+++ ++.|||+||++...+. ..|+.+++.. ..+.+. +++.++++.+
T Consensus 53 ~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (275)
T 3gfo_A 53 NFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT 131 (275)
T ss_dssp HHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 58999999999998764 2359999998742222 4566665432 223332 4577889999
Q ss_pred CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~ 137 (184)
|+++..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++ +.|||+||||++++..+
T Consensus 132 ~L~~~~~-~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~ 210 (275)
T 3gfo_A 132 GIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY 210 (275)
T ss_dssp TCGGGTT-SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGG
T ss_pred CCchhhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHh
Confidence 9987665 589999999999999999999999999999999999999999999888643 67999999999999999
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|+++. .++..++
T Consensus 211 ~drv~~l~~G~i~~-~g~~~~~ 231 (275)
T 3gfo_A 211 CDNVFVMKEGRVIL-QGNPKEV 231 (275)
T ss_dssp CSEEEEEETTEEEE-EECHHHH
T ss_pred CCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999975 5665554
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.1e-36 Score=248.08 Aligned_cols=155 Identities=22% Similarity=0.269 Sum_probs=127.9
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..|+.+++.. ..+.+ .+++.++++.+|+++
T Consensus 60 ~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~ 137 (355)
T 1z47_A 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES 137 (355)
T ss_dssp HHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred HHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 58999999999998764 346999999874 4455566655432 22333 245778999999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++++|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|+|+||||++++..+||++
T Consensus 138 ~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri 216 (355)
T 1z47_A 138 YAN-RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRV 216 (355)
T ss_dssp GTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEE
T ss_pred Hhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEE
Confidence 665 58999999999999999999999999999999999999999999988864 3789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
++|++|+++. .++++++.
T Consensus 217 ~vl~~G~i~~-~g~~~~l~ 234 (355)
T 1z47_A 217 LVLHEGNVEQ-FGTPEEVY 234 (355)
T ss_dssp EEEETTEEEE-EECHHHHH
T ss_pred EEEECCEEEE-EcCHHHHH
Confidence 9999999975 55655543
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=9.6e-36 Score=247.34 Aligned_cols=155 Identities=22% Similarity=0.249 Sum_probs=129.5
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCC----HHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLP----YEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..|+.+++.... +.+ .+++.++++.+|+++
T Consensus 48 ~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 125 (359)
T 2yyz_A 48 MLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA--LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN 125 (359)
T ss_dssp HHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCC--CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG
T ss_pred HHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 58999999999998764 246999999874 556677777765422 221 245788999999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++. +.|+|+||||++++..+||++
T Consensus 126 ~~~-r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri 204 (359)
T 2yyz_A 126 LLD-RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRI 204 (359)
T ss_dssp GTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEE
T ss_pred Hhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 665 589999999999999999999999999999999999999999999888653 789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
++|++|+++. .++++++.
T Consensus 205 ~vl~~G~i~~-~g~~~~l~ 222 (359)
T 2yyz_A 205 AVFNQGKLVQ-YGTPDEVY 222 (359)
T ss_dssp EEEETTEEEE-EECHHHHH
T ss_pred EEEECCEEEE-eCCHHHHH
Confidence 9999999975 55655543
No 11
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.2e-36 Score=249.38 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=127.3
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-CHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-PYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~~~~~~~~l~~~~l~~~~~ 68 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..|+.+++.. ..+. ..+++.++++.+++++..+
T Consensus 45 ~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~ 122 (348)
T 3d31_A 45 LIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS--LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD 122 (348)
T ss_dssp HHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCC--CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT
T ss_pred HHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc
Confidence 58999999999998765 246999999874 4445566555432 1221 2367888999999987665
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
+++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++. +.|+|+||||++++..+||++++|
T Consensus 123 -~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl 201 (348)
T 3d31_A 123 -RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201 (348)
T ss_dssp -SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred -CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 589999999999999999999999999999999999999999999888653 789999999999999999999999
Q ss_pred eCCeEEEecCChhHH
Q psy11928 145 ENQTIEEIDGDFDDY 159 (184)
Q Consensus 145 ~~g~i~~~~~~~~~~ 159 (184)
++|++.. .++++++
T Consensus 202 ~~G~i~~-~g~~~~~ 215 (348)
T 3d31_A 202 MDGKLIQ-VGKPEEI 215 (348)
T ss_dssp SSSCEEE-EECHHHH
T ss_pred ECCEEEE-ECCHHHH
Confidence 9999975 4555443
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-35 Score=246.68 Aligned_cols=155 Identities=24% Similarity=0.259 Sum_probs=128.9
Q ss_pred cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCC----HHHHHHHHhh
Q psy11928 2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLP----YEKARKQLGT 60 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~----~~~~~~~l~~ 60 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..|+.+++.... +.+ .+++.++++.
T Consensus 50 ~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~ 127 (353)
T 1oxx_K 50 IIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127 (353)
T ss_dssp HHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 58999999999997653 246999999874 556677777765422 222 2457789999
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD 136 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~ 136 (184)
+|+++..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++. +.|+|+||||++++..
T Consensus 128 ~~L~~~~~-~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~ 206 (353)
T 1oxx_K 128 LDIHHVLN-HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA 206 (353)
T ss_dssp TTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred cCCchHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99987665 589999999999999999999999999999999999999999999888643 7899999999999999
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
+||++++|++|+++. .++++++.
T Consensus 207 ~adri~vl~~G~i~~-~g~~~~l~ 229 (353)
T 1oxx_K 207 IADRVGVLVKGKLVQ-VGKPEDLY 229 (353)
T ss_dssp HCSEEEEEETTEEEE-EECHHHHH
T ss_pred hCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999975 45555543
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-35 Score=246.92 Aligned_cols=155 Identities=23% Similarity=0.241 Sum_probs=127.9
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.+..|+.+++.. ..+... +++.++++.+|+++
T Consensus 48 ~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 125 (362)
T 2it1_A 48 TIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK 125 (362)
T ss_dssp HHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT
T ss_pred HHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 58999999999998764 246999999874 4455566665432 223332 45778999999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++. +.|+|+||||++++..+||++
T Consensus 126 ~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri 204 (362)
T 2it1_A 126 LLN-RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRI 204 (362)
T ss_dssp CTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE
T ss_pred Hhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 665 589999999999999999999999999999999999999999999888653 789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
++|++|+++. .++++++.
T Consensus 205 ~vl~~G~i~~-~g~~~~~~ 222 (362)
T 2it1_A 205 AVIREGEILQ-VGTPDEVY 222 (362)
T ss_dssp EEEETTEEEE-EECHHHHH
T ss_pred EEEECCEEEE-EcCHHHHH
Confidence 9999999975 45655543
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.3e-35 Score=236.44 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=128.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc---C--CCHHHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---N--LPYEKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~--~~~~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ ++.+||++|++. +....++.+++.... . ...+++.++++.+++.+
T Consensus 56 ~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~ 133 (266)
T 4g1u_C 56 LLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA 133 (266)
T ss_dssp HHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST
T ss_pred HHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh
Confidence 58999999999998764 235999999874 334567777765321 1 12356788999999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLN------APDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
..+ +++.+|||||||||+|||||+. +|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.
T Consensus 134 ~~~-~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~ 212 (266)
T 4g1u_C 134 LAQ-RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAA 212 (266)
T ss_dssp TTT-SBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHH
T ss_pred Hhc-CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHH
Confidence 665 5899999999999999999999 99999999999999999999999988754 359999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+||++++|++|+++. .++.+++
T Consensus 213 ~~~d~v~vl~~G~i~~-~g~~~~~ 235 (266)
T 4g1u_C 213 LYADRIMLLAQGKLVA-CGTPEEV 235 (266)
T ss_dssp HHCSEEEEEETTEEEE-EECHHHH
T ss_pred HhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999975 5666554
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.6e-35 Score=231.90 Aligned_cols=146 Identities=24% Similarity=0.316 Sum_probs=120.9
Q ss_pred cccCcccCCceeEEecCC---------------eEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNHR---------------LRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~---------------~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++. +.+||+||++. +....++.+++.. ..+.. .+++.++++
T Consensus 49 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 126 (224)
T 2pcj_A 49 ILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY--LIPELTALENVIVPMLKMGKPKKEAKERGEYLLS 126 (224)
T ss_dssp HHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcc--cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHH
Confidence 589999999999987531 35999999874 3445566655432 22222 245778999
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD 136 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 136 (184)
.+|+.+..+ +++++|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++ +.|||+||||++++ .
T Consensus 127 ~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~ 204 (224)
T 2pcj_A 127 ELGLGDKLS-RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-E 204 (224)
T ss_dssp HTTCTTCTT-CCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-T
T ss_pred HcCCchhhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-H
Confidence 999987665 589999999999999999999999999999999999999999999988654 68999999999998 7
Q ss_pred hcCeEEEEeCCeEEE
Q psy11928 137 TECTLWVIENQTIEE 151 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~ 151 (184)
+||++++|++|+++.
T Consensus 205 ~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 205 LTHRTLEMKDGKVVG 219 (224)
T ss_dssp TSSEEEEEETTEEEE
T ss_pred hCCEEEEEECCEEEE
Confidence 999999999999864
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-35 Score=236.65 Aligned_cols=154 Identities=20% Similarity=0.273 Sum_probs=126.1
Q ss_pred cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCC
Q psy11928 2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLA 64 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~ 64 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +....|+.+++.. .++... +++.++++.+|++
T Consensus 60 ~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 137 (256)
T 1vpl_A 60 IISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG 137 (256)
T ss_dssp HHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG
T ss_pred HHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc
Confidence 58999999999998764 235999999874 3344566555432 223332 3567889999998
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i 141 (184)
+..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++
T Consensus 138 ~~~~-~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v 216 (256)
T 1vpl_A 138 EKIK-DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRI 216 (256)
T ss_dssp GGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEE
T ss_pred hHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEE
Confidence 7665 589999999999999999999999999999999999999999999998654 679999999999999999999
Q ss_pred EEEeCCeEEEecCChhHH
Q psy11928 142 WVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~ 159 (184)
++|++|+++. .++.+++
T Consensus 217 ~~l~~G~i~~-~g~~~~~ 233 (256)
T 1vpl_A 217 ALIHNGTIVE-TGTVEEL 233 (256)
T ss_dssp EEEETTEEEE-EEEHHHH
T ss_pred EEEECCEEEE-ecCHHHH
Confidence 9999999975 4555444
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.8e-35 Score=246.71 Aligned_cols=155 Identities=23% Similarity=0.229 Sum_probs=125.4
Q ss_pred cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCH----HHHHHHHhhCCCCc
Q psy11928 2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPY----EKARKQLGTFGLAG 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~l~~~~l~~ 65 (184)
+|+|+++|++|+|.+++ ++.|||+||++. +.+..|+.+++... .+... +++.++++.+|+++
T Consensus 56 ~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 133 (372)
T 1v43_A 56 MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE 133 (372)
T ss_dssp HHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG
T ss_pred HHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence 58999999999998764 346999999874 45566777776532 12222 35778999999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i 141 (184)
..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||++
T Consensus 134 ~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri 212 (372)
T 1v43_A 134 LLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI 212 (372)
T ss_dssp GTT-SCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE
T ss_pred Hhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 665 589999999999999999999999999999999999999999999888653 789999999999999999999
Q ss_pred EEEeCCeEEEecCChhHHH
Q psy11928 142 WVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 142 ~~l~~g~i~~~~~~~~~~~ 160 (184)
++|++|+++. .++++++.
T Consensus 213 ~vl~~G~i~~-~g~~~~l~ 230 (372)
T 1v43_A 213 AVMNRGQLLQ-IGSPTEVY 230 (372)
T ss_dssp EEEETTEEEE-EECHHHHH
T ss_pred EEEECCEEEE-eCCHHHHH
Confidence 9999999975 55655543
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.7e-35 Score=245.89 Aligned_cols=155 Identities=23% Similarity=0.300 Sum_probs=127.1
Q ss_pred cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ ++.|||+||++. +.+..|+.+++.. ..+... +++.++++
T Consensus 48 ~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~ 125 (372)
T 1g29_1 48 MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE 125 (372)
T ss_dssp HHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 58999999999998653 235999999874 4455566655432 223332 45778999
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHH
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIR 135 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~ 135 (184)
.+|+++..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .+.|+|+||||++++.
T Consensus 126 ~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~ 204 (372)
T 1g29_1 126 LLGLTELLN-RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM 204 (372)
T ss_dssp HHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred HCCCchHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH
Confidence 999987665 58999999999999999999999999999999999999999999988864 3789999999999999
Q ss_pred hhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
.+||++++|++|+++. .++++++.
T Consensus 205 ~~adri~vl~~G~i~~-~g~~~~l~ 228 (372)
T 1g29_1 205 TMGDRIAVMNRGVLQQ-VGSPDEVY 228 (372)
T ss_dssp HHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhCCEEEEEeCCEEEE-eCCHHHHH
Confidence 9999999999999975 55655543
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.3e-35 Score=236.83 Aligned_cols=153 Identities=23% Similarity=0.204 Sum_probs=125.6
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----C-----------CC---
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----N-----------LP--- 50 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----~-----------~~--- 50 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....|+.+++.... + ..
T Consensus 52 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T 1g6h_A 52 VITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129 (257)
T ss_dssp HHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHH
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHH
Confidence 58999999999998764 125999999873 344556666654311 1 11
Q ss_pred -HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928 51 -YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVII 126 (184)
Q Consensus 51 -~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii 126 (184)
.+++.++++.+|+++..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++. +.|||+
T Consensus 130 ~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 208 (257)
T 1g6h_A 130 MVEKAFKILEFLKLSHLYD-RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 208 (257)
T ss_dssp HHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCchhhC-CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 235778899999986665 589999999999999999999999999999999999999999999998754 789999
Q ss_pred EecCHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928 127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~ 158 (184)
||||++++..+||++++|++|+++. .++.++
T Consensus 209 vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 209 IEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp ECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred EecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 9999999999999999999999975 445444
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-35 Score=230.87 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=125.1
Q ss_pred cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CC--C--HHHHHHHHhhCC-
Q psy11928 2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NL--P--YEKARKQLGTFG- 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~--~--~~~~~~~l~~~~- 62 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....|+.+++.... .. . .+.+.++++.++
T Consensus 51 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~ 128 (240)
T 1ji0_A 51 AIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPR 128 (240)
T ss_dssp HHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHH
T ss_pred HHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCc--cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHccc
Confidence 58999999999998764 124999999874 445567777665321 11 1 235677888894
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~ 139 (184)
+.+..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++. +.|||+||||++++..+||
T Consensus 129 l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 129 LKERLK-QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207 (240)
T ss_dssp HHTTTT-SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred HhhHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 876554 589999999999999999999999999999999999999999999998654 6799999999999999999
Q ss_pred eEEEEeCCeEEEecCChhHH
Q psy11928 140 TLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~~ 159 (184)
++++|++|+++. .++.+++
T Consensus 208 ~v~~l~~G~i~~-~g~~~~~ 226 (240)
T 1ji0_A 208 YGYVLETGQIVL-EGKASEL 226 (240)
T ss_dssp EEEEEETTEEEE-EEEHHHH
T ss_pred EEEEEECCEEEE-EcCHHHH
Confidence 999999999975 4554444
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.8e-35 Score=233.35 Aligned_cols=155 Identities=26% Similarity=0.325 Sum_probs=126.3
Q ss_pred cccCcccCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHHhc----C--CCHHHHHHHHhhCCCC--c
Q psy11928 2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQRLF----N--LPYEKARKQLGTFGLA--G 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~--~~~~~~~~~l~~~~l~--~ 65 (184)
+|+|+++|++|+|.+++ ++.+||+||++...+ ...|+.+++.... . ...+++.++++.+|++ +
T Consensus 52 ~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 130 (266)
T 2yz2_A 52 IVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDS 130 (266)
T ss_dssp HHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHH
T ss_pred HHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcc
Confidence 58999999999998865 346999999862112 3456666654321 1 1245688899999998 6
Q ss_pred ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEE
Q psy11928 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~ 142 (184)
..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+++
T Consensus 131 ~~~-~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~ 209 (266)
T 2yz2_A 131 FKD-RVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVV 209 (266)
T ss_dssp HTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEE
T ss_pred ccc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 655 589999999999999999999999999999999999999999999998654 6799999999999999999999
Q ss_pred EEeCCeEEEecCChhHH
Q psy11928 143 VIENQTIEEIDGDFDDY 159 (184)
Q Consensus 143 ~l~~g~i~~~~~~~~~~ 159 (184)
+|++|+++. .++.++.
T Consensus 210 ~l~~G~i~~-~g~~~~~ 225 (266)
T 2yz2_A 210 VLEKGKKVF-DGTRMEF 225 (266)
T ss_dssp EEETTEEEE-EEEHHHH
T ss_pred EEECCEEEE-eCCHHHH
Confidence 999999864 4444443
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1e-34 Score=231.16 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=124.4
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc----C----CC---HHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF----N----LP---YEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~----~~---~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+++|++|+|.. ++.+||+||++. +....|+.+++.... + .. .+++.++++.+|+.+..+ +
T Consensus 50 ~l~Gl~~p~~G~I~~--~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~ 124 (253)
T 2nq2_C 50 LLLGIHRPIQGKIEV--YQSIGFVPQFFS--SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-R 124 (253)
T ss_dssp HHTTSSCCSEEEEEE--CSCEEEECSCCC--CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-S
T ss_pred HHhCCCCCCCcEEEE--eccEEEEcCCCc--cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-C
Confidence 589999999999984 457999999874 334556766654321 1 12 245778899999987665 5
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN 146 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~ 146 (184)
++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||+||||++++..+||++++|++
T Consensus 125 ~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204 (253)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 89999999999999999999999999999999999999999999998654 68999999999999999999999999
Q ss_pred CeEEEecCChhHH
Q psy11928 147 QTIEEIDGDFDDY 159 (184)
Q Consensus 147 g~i~~~~~~~~~~ 159 (184)
|+ +. .++.+++
T Consensus 205 G~-~~-~g~~~~~ 215 (253)
T 2nq2_C 205 QN-FK-FGETRNI 215 (253)
T ss_dssp TE-EE-EEEHHHH
T ss_pred Ce-Ee-cCCHHHH
Confidence 99 54 4555444
No 23
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-34 Score=230.29 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=127.1
Q ss_pred cccCcccCCceeEEecC--------CeEEE-EEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCC-cccc
Q psy11928 2 YAHCDLQPQQGELKKNH--------RLRIG-RFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLA-GHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------~~~ig-~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~-~~~~ 68 (184)
.|+|++ |++|+|.+++ ++.+| |+||++. + ..|+.+++... +....+++.++++.+|++ +..+
T Consensus 49 ~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 123 (263)
T 2pjz_A 49 AISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR 123 (263)
T ss_dssp HHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG
T ss_pred HHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc
Confidence 589999 9999998765 34699 9999874 3 55666655321 234466788999999998 6665
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcC-eEEEEeCC
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTEC-TLWVIENQ 147 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~-~i~~l~~g 147 (184)
+++++|||||||||+|||||+.+|+++||||||++||+.++..+.+.|.++..|||+||||++++..+|| ++++|++|
T Consensus 124 -~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 124 -RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp -SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred -CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECC
Confidence 5899999999999999999999999999999999999999999999999875599999999999999999 99999999
Q ss_pred eEEEecCChhHH
Q psy11928 148 TIEEIDGDFDDY 159 (184)
Q Consensus 148 ~i~~~~~~~~~~ 159 (184)
+++. .++.+++
T Consensus 203 ~i~~-~g~~~~l 213 (263)
T 2pjz_A 203 RLQG-PISVSEL 213 (263)
T ss_dssp EEEE-EEEHHHH
T ss_pred EEEE-ecCHHHH
Confidence 9875 4555443
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.3e-34 Score=228.61 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=127.6
Q ss_pred cccCcccCCceeEEecCC-----------eEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNHR-----------LRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~-----------~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~ 68 (184)
.|+|+++|+ |+|.+++. +.+||+||++. +....|+.+++.... ....+++.++++.+|+++..+
T Consensus 45 ~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~ 121 (249)
T 2qi9_C 45 RMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG 121 (249)
T ss_dssp HHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT
T ss_pred HHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc
Confidence 589999999 99987652 35999999874 344567777765421 123567888999999987665
Q ss_pred cccccCCChhHHHHHHHHHHHhcCCC-------EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928 69 TIKMKDLSGGQKARVALAELTLNAPD-------VIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~~~p~-------illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 138 (184)
+++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+|
T Consensus 122 -~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~ 200 (249)
T 2qi9_C 122 -RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHA 200 (249)
T ss_dssp -SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred -CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 5899999999999999999999999 99999999999999999999998754 679999999999999999
Q ss_pred CeEEEEeCCeEEEecCChhHH
Q psy11928 139 CTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~~~~ 159 (184)
|++++|++|+++. .++.+++
T Consensus 201 d~v~~l~~G~i~~-~g~~~~~ 220 (249)
T 2qi9_C 201 HRAWLLKGGKMLA-SGRREEV 220 (249)
T ss_dssp SEEEEEETTEEEE-EEEHHHH
T ss_pred CEEEEEECCEEEE-eCCHHHH
Confidence 9999999999875 4555444
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.2e-35 Score=237.09 Aligned_cols=156 Identities=21% Similarity=0.295 Sum_probs=125.1
Q ss_pred cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cC-CC---HHHHHHH
Q psy11928 2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FN-LP---YEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~-~~---~~~~~~~ 57 (184)
+|+|+++|++|+|.+++ ++.|||+||++...+....|+.+++... ++ .. .+++.++
T Consensus 66 ~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (279)
T 2ihy_A 66 ILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQL 145 (279)
T ss_dssp HHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHH
T ss_pred HHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHH
Confidence 58999999999998764 1359999998631122234666665431 11 11 2356788
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEE--EEEecCHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGV--IIVSHDER 132 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~ti--iivsHd~~ 132 (184)
++.+|+++..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++ +.|| |+||||++
T Consensus 146 l~~~gl~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 146 LKLVGMSAKAQ-QYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE 224 (279)
T ss_dssp HHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG
T ss_pred HHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH
Confidence 99999986665 589999999999999999999999999999999999999999999998654 6799 99999999
Q ss_pred HHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 133 LIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
++..+||++++|++|+++. .++.+++
T Consensus 225 ~~~~~~d~v~~l~~G~i~~-~g~~~~~ 250 (279)
T 2ihy_A 225 EITANFSKILLLKDGQSIQ-QGAVEDI 250 (279)
T ss_dssp GCCTTCCEEEEEETTEEEE-EEEHHHH
T ss_pred HHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999975 4555444
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.5e-33 Score=223.64 Aligned_cols=153 Identities=24% Similarity=0.328 Sum_probs=121.3
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH- 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~- 68 (184)
+|+|+++|++|+|.+++ ++.|||+||++. +.. .|+.+++.... ....+++.++++.+++.+...
T Consensus 54 ~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~ 130 (247)
T 2ff7_A 54 LIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE 130 (247)
T ss_dssp HHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHT
T ss_pred HHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh
Confidence 58999999999998764 235999999874 333 47777764321 223455666777777654332
Q ss_pred ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
.+++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|.+. +.|||+||||++.+..
T Consensus 131 ~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~- 209 (247)
T 2ff7_A 131 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN- 209 (247)
T ss_dssp STTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-
T ss_pred CcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-
Confidence 1246899999999999999999999999999999999999999999999765 7899999999999865
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|+++. .++.++.
T Consensus 210 ~d~v~~l~~G~i~~-~g~~~~l 230 (247)
T 2ff7_A 210 ADRIIVMEKGKIVE-QGKHKEL 230 (247)
T ss_dssp SSEEEEEETTEEEE-EECHHHH
T ss_pred CCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999975 4554443
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.6e-33 Score=226.24 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=121.3
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-C-CHH---------HHHHHHh
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-L-PYE---------KARKQLG 59 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~-~~~---------~~~~~l~ 59 (184)
+|+|+++|++|+|.+++ ++.|||+||++. +.. .|+.+++..... . ... .+.++++
T Consensus 64 ~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (271)
T 2ixe_A 64 LLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS 140 (271)
T ss_dssp HHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHH
Confidence 58999999999998764 235999999874 333 477777654211 1 101 1234566
Q ss_pred hC--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928 60 TF--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL 133 (184)
Q Consensus 60 ~~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~ 133 (184)
.+ |+....+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||+++
T Consensus 141 ~l~~gl~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~ 219 (271)
T 2ixe_A 141 GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL 219 (271)
T ss_dssp HSTTGGGSBCC-GGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH
T ss_pred hhhcchhhhhc-CCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 66 6765554 579999999999999999999999999999999999999999999999765 5799999999999
Q ss_pred HHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928 134 IRDTECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
+.. ||++++|++|+++. .++.+++.
T Consensus 220 ~~~-~d~v~~l~~G~i~~-~g~~~~l~ 244 (271)
T 2ixe_A 220 AER-AHHILFLKEGSVCE-QGTHLQLM 244 (271)
T ss_dssp HTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred HHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 975 99999999999975 45655543
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.3e-33 Score=227.80 Aligned_cols=155 Identities=24% Similarity=0.301 Sum_probs=122.3
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc-
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH- 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~- 68 (184)
.|+|+++|++|+|.+++ ++.|||+||++. +. ..|+.+++.... ....+++.+.++.+++.+...
T Consensus 99 ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~ 175 (306)
T 3nh6_A 99 LLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV--LF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMA 175 (306)
T ss_dssp HHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCC--CC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCc--cC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHh
Confidence 58999999999999865 346999999974 33 347888775432 223445555555555433221
Q ss_pred ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
.++..+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.+. +.|+|+|||+++.+..
T Consensus 176 lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~- 254 (306)
T 3nh6_A 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN- 254 (306)
T ss_dssp STTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-
T ss_pred ccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-
Confidence 1356899999999999999999999999999999999999999999999764 6799999999999987
Q ss_pred cCeEEEEeCCeEEEecCChhHHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
||+|++|++|++++ .|+.+++.+
T Consensus 255 aD~i~vl~~G~iv~-~G~~~el~~ 277 (306)
T 3nh6_A 255 ADQILVIKDGCIVE-RGRHEALLS 277 (306)
T ss_dssp CSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999986 566655443
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8e-34 Score=225.56 Aligned_cols=152 Identities=20% Similarity=0.296 Sum_probs=116.3
Q ss_pred cccCc--ccCCceeEEecCC------------eEEEEEecCCCCCCCccCCHHHHHHH----hcC--CC----HHHHHHH
Q psy11928 2 YAHCD--LQPQQGELKKNHR------------LRIGRFDQHSGEHLTAEETPAEYLQR----LFN--LP----YEKARKQ 57 (184)
Q Consensus 2 ~~~G~--~~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~--~~----~~~~~~~ 57 (184)
+|+|+ ++|++|+|.+++. ..++|+||++. +....++.+++.. ..+ .. .+++.++
T Consensus 48 ~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (250)
T 2d2e_A 48 ILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKA 125 (250)
T ss_dssp HHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHH
Confidence 57898 7899999987641 23889999874 3344455554421 111 11 2456788
Q ss_pred HhhCCCC-cccccccccC-CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928 58 LGTFGLA-GHAHTIKMKD-LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER 132 (184)
Q Consensus 58 l~~~~l~-~~~~~~~~~~-LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~ 132 (184)
++.+|++ +.. ++++++ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++
T Consensus 126 l~~~gl~~~~~-~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 126 LELLDWDESYL-SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp HHHHTCCGGGG-GSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred HHHcCCChhHh-cCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9999994 444 458898 9999999999999999999999999999999999999999999765 579999999999
Q ss_pred HHHhh-cCeEEEEeCCeEEEecCChh
Q psy11928 133 LIRDT-ECTLWVIENQTIEEIDGDFD 157 (184)
Q Consensus 133 ~~~~~-~~~i~~l~~g~i~~~~~~~~ 157 (184)
++..+ ||++++|++|+++. .++.+
T Consensus 205 ~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 205 ILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp GGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred HHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 99888 59999999999975 45544
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-33 Score=223.21 Aligned_cols=154 Identities=25% Similarity=0.318 Sum_probs=123.4
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~ 68 (184)
+|+|+++|++|+|.+++ ++.+||+||++. +.. .|+.+++... .....+++.++++.+++.+...
T Consensus 47 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~ 123 (243)
T 1mv5_A 47 LLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123 (243)
T ss_dssp HHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTT
T ss_pred HHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHH
Confidence 58999999999998753 345999999974 333 3777776432 1234556777888888765432
Q ss_pred c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
. +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+. +.|||+||||++.+.
T Consensus 124 ~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~- 202 (243)
T 1mv5_A 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV- 202 (243)
T ss_dssp SSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-
T ss_pred hCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-
Confidence 1 246899999999999999999999999999999999999999999988764 689999999999986
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
.||++++|++|+++. .++.+++.
T Consensus 203 ~~d~v~~l~~G~i~~-~g~~~~~~ 225 (243)
T 1mv5_A 203 DADKIYFIEKGQITG-SGKHNELV 225 (243)
T ss_dssp HCSEEEEEETTEECC-CSCHHHHH
T ss_pred hCCEEEEEECCEEEE-eCCHHHHH
Confidence 599999999999864 56665553
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.7e-33 Score=223.71 Aligned_cols=154 Identities=22% Similarity=0.293 Sum_probs=119.9
Q ss_pred cccCc--ccCCceeEEecCC------------eEEEEEecCCCCCCCccCCHHHHHHH----h---cC---CCH----HH
Q psy11928 2 YAHCD--LQPQQGELKKNHR------------LRIGRFDQHSGEHLTAEETPAEYLQR----L---FN---LPY----EK 53 (184)
Q Consensus 2 ~~~G~--~~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~~~~~~~~~----~---~~---~~~----~~ 53 (184)
+|+|+ .+|++|+|.+++. ..+||+||++. +....++.+++.. . .. ... ++
T Consensus 65 ~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (267)
T 2zu0_C 65 TLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL 142 (267)
T ss_dssp HHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHH
T ss_pred HHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHH
Confidence 57898 4799999987641 23999999874 3344455444321 0 11 122 35
Q ss_pred HHHHHhhCCCCccccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928 54 ARKQLGTFGLAGHAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH 129 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH 129 (184)
+.++++.+|+.....++++. +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+|||
T Consensus 143 ~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 222 (267)
T 2zu0_C 143 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222 (267)
T ss_dssp HHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 67889999996433345777 59999999999999999999999999999999999999999999765 579999999
Q ss_pred CHHHHHhh-cCeEEEEeCCeEEEecCChhH
Q psy11928 130 DERLIRDT-ECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 130 d~~~~~~~-~~~i~~l~~g~i~~~~~~~~~ 158 (184)
|++++..+ ||++++|++|+++. .++.++
T Consensus 223 d~~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 251 (267)
T 2zu0_C 223 YQRILDYIKPDYVHVLYQGRIVK-SGDFTL 251 (267)
T ss_dssp SGGGGGTSCCSEEEEEETTEEEE-EECTTH
T ss_pred CHHHHHhhcCCEEEEEECCEEEE-EcCHHH
Confidence 99999886 89999999999975 445444
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.8e-32 Score=215.17 Aligned_cols=151 Identities=21% Similarity=0.267 Sum_probs=116.1
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc----------ccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH----------TIK 71 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~ 71 (184)
+|+|+++|++|+|.+++ .+||+||++. +... |+.+++.........+..+.++.+++.+... .++
T Consensus 53 ~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 127 (229)
T 2pze_A 53 MIMGELEPSEGKIKHSG--RISFCSQFSW--IMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127 (229)
T ss_dssp HHTTSSCCSEEEEEECS--CEEEECSSCC--CCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTT
T ss_pred HHhCCCcCCccEEEECC--EEEEEecCCc--ccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCC
Confidence 58999999999999876 5999999874 3333 7888775432222333344444444432111 124
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-Hhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-NEY--KGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
+.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.+ .+. +.|||+||||++++. .||++++|++|+
T Consensus 128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~ 206 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 206 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTE
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999964 433 679999999999986 599999999999
Q ss_pred EEEecCChhHH
Q psy11928 149 IEEIDGDFDDY 159 (184)
Q Consensus 149 i~~~~~~~~~~ 159 (184)
++. .++.++.
T Consensus 207 i~~-~g~~~~~ 216 (229)
T 2pze_A 207 SYF-YGTFSEL 216 (229)
T ss_dssp EEE-EECHHHH
T ss_pred EEE-ECCHHHH
Confidence 975 4555443
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.9e-33 Score=217.97 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=115.6
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCC------c-----ccccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLA------G-----HAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~-----~~~~~ 70 (184)
+|+|+++|++|+|.+++ .+||+||++. + ...|+.+++........+...++++.+++. + .. .+
T Consensus 50 ~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ 123 (237)
T 2cbz_A 50 ALLAEMDKVEGHVAIKG--SVAYVPQQAW--I-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI-GE 123 (237)
T ss_dssp HHTTCSEEEEEEEEECS--CEEEECSSCC--C-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEE-ST
T ss_pred HHhcCCCCCCceEEECC--EEEEEcCCCc--C-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccc-cC
Confidence 58999999999999876 5999999973 3 355777776543222222222333333221 1 12 35
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---h--cCcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN---E--YKGGVIIVSHDERLIRDTECTLWVIE 145 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~---~--~~~tiiivsHd~~~~~~~~~~i~~l~ 145 (184)
++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.+. + .+.|||+||||++++. .||++++|+
T Consensus 124 ~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~ 202 (237)
T 2cbz_A 124 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMS 202 (237)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEe
Confidence 789999999999999999999999999999999999999999999884 2 2679999999999985 699999999
Q ss_pred CCeEEEecCChhHH
Q psy11928 146 NQTIEEIDGDFDDY 159 (184)
Q Consensus 146 ~g~i~~~~~~~~~~ 159 (184)
+|+++. .++.+++
T Consensus 203 ~G~i~~-~g~~~~~ 215 (237)
T 2cbz_A 203 GGKISE-MGSYQEL 215 (237)
T ss_dssp TTEEEE-EECHHHH
T ss_pred CCEEEE-eCCHHHH
Confidence 999975 5565554
No 34
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-33 Score=218.51 Aligned_cols=143 Identities=25% Similarity=0.304 Sum_probs=116.1
Q ss_pred cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHH---hc--CCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF--NLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~--~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+++|++|+|.+++ +..+||+||++. +....|+.+++.. .+ ....+++.++++.+|++.. + +
T Consensus 54 ~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~-~ 129 (214)
T 1sgw_A 54 TISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-K-K 129 (214)
T ss_dssp HHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-T-S
T ss_pred HHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-C-C
Confidence 58999999999999865 246999999874 3344566665432 11 2235678889999999866 4 6
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|.+. +.|||+||||++++..+|+++++ -.|
T Consensus 130 ~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~ 208 (214)
T 1sgw_A 130 KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YST 208 (214)
T ss_dssp BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCC
Confidence 89999999999999999999999999999999999999999999988754 57999999999999999988764 345
Q ss_pred eE
Q psy11928 148 TI 149 (184)
Q Consensus 148 ~i 149 (184)
+|
T Consensus 209 ~~ 210 (214)
T 1sgw_A 209 KI 210 (214)
T ss_dssp --
T ss_pred cc
Confidence 44
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.98 E-value=5.2e-32 Score=216.29 Aligned_cols=152 Identities=24% Similarity=0.285 Sum_probs=120.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccc--
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHA-- 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-- 67 (184)
+|+|+++| +|+|.+++ ++.|||+||++. +.. .|+.+++.... ....+++.+.++.+++.+..
T Consensus 65 ~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~ 140 (260)
T 2ghi_A 65 LLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTI--LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEA 140 (260)
T ss_dssp HHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHT
T ss_pred HHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCc--ccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHh
Confidence 58899987 89998764 235999999974 333 47777765421 22345566777777764321
Q ss_pred --------ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 68 --------HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 68 --------~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
..+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++.+. .
T Consensus 141 l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~ 219 (260)
T 2ghi_A 141 LPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-S 219 (260)
T ss_dssp STTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-T
T ss_pred ccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-h
Confidence 12367899999999999999999999999999999999999999999999765 579999999999986 4
Q ss_pred cCeEEEEeCCeEEEecCChhHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||++++|++|+++. .++.++.
T Consensus 220 ~d~i~~l~~G~i~~-~g~~~~l 240 (260)
T 2ghi_A 220 AESIILLNKGKIVE-KGTHKDL 240 (260)
T ss_dssp CSEEEEEETTEEEE-EECHHHH
T ss_pred CCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999975 5555554
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.7e-32 Score=228.85 Aligned_cols=152 Identities=19% Similarity=0.189 Sum_probs=126.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
.|+|+++ ++|+|.+++ ++.+||+||++. +.. .|+.+++........+++.++++.+++.+..+ +
T Consensus 66 ~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~--lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~-~ 140 (390)
T 3gd7_A 66 AFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVF--IFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIE-Q 140 (390)
T ss_dssp HHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCC--CCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHT-T
T ss_pred HHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcc--cCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHh-h
Confidence 5789987 899999864 256999999974 333 47777765333345677889999999987665 5
Q ss_pred cccC-----------CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 71 KMKD-----------LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 71 ~~~~-----------LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
++.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.|++. +.|+|+||||++.+. .
T Consensus 141 ~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~ 219 (390)
T 3gd7_A 141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-E 219 (390)
T ss_dssp STTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-T
T ss_pred cccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-h
Confidence 7887 9999999999999999999999999999999999999999999865 579999999987665 5
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||+|++|++|+++. .+++.+++
T Consensus 220 aDri~vl~~G~i~~-~g~~~el~ 241 (390)
T 3gd7_A 220 CDQFLVIEENKVRQ-YDSILELY 241 (390)
T ss_dssp CSEEEEEETTEEEE-ESSHHHHH
T ss_pred CCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999976 56665544
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.97 E-value=4.2e-31 Score=214.00 Aligned_cols=150 Identities=21% Similarity=0.279 Sum_probs=114.9
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc----------ccc
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH----------TIK 71 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~ 71 (184)
+|+|+++|++|+|.+++ ++||+||++. +.. .|+.+++. ..........+.++.+++..... .++
T Consensus 83 ~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~~-~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 156 (290)
T 2bbs_A 83 MIMGELEPSEGKIKHSG--RISFCSQNSW--IMP-GTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156 (290)
T ss_dssp HHTTSSCEEEEEEECCS--CEEEECSSCC--CCS-SBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC---
T ss_pred HHhcCCCCCCcEEEECC--EEEEEeCCCc--cCc-ccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCc
Confidence 58999999999999876 5999999874 333 37777775 22222333444555555532211 123
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-Hhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-NEY--KGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
+.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.+ .+. +.|||+||||++++. .||++++|++|+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~ 235 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 235 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTE
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCe
Confidence 5899999999999999999999999999999999999999999964 333 679999999999986 599999999999
Q ss_pred EEEecCChhHH
Q psy11928 149 IEEIDGDFDDY 159 (184)
Q Consensus 149 i~~~~~~~~~~ 159 (184)
++. .++.++.
T Consensus 236 i~~-~g~~~~l 245 (290)
T 2bbs_A 236 SYF-YGTFSEL 245 (290)
T ss_dssp EEE-EECHHHH
T ss_pred EEE-eCCHHHH
Confidence 975 5565554
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.97 E-value=7.1e-31 Score=230.55 Aligned_cols=154 Identities=25% Similarity=0.281 Sum_probs=124.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~ 68 (184)
.|+|+++|++|+|.+++ ++.+||+||++. +.. .|+.+++.... ..+.+++.+.++.+++.+...
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (582)
T 3b5x_A 388 LFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIE 464 (582)
T ss_pred HHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHH
Confidence 57899999999998764 346999999974 333 47777765422 334567778888887754332
Q ss_pred c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
. ++..+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+. +.|+|+||||++.+.
T Consensus 465 ~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~- 543 (582)
T 3b5x_A 465 NMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE- 543 (582)
T ss_pred hCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-
Confidence 1 245899999999999999999999999999999999999999999999765 689999999999987
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
.||++++|++|++++ .|+.++..
T Consensus 544 ~~d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b5x_A 544 QADEILVVDEGEIIE-RGRHADLL 566 (582)
T ss_pred hCCEEEEEECCEEEE-ECCHHHHH
Confidence 699999999999976 56665543
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.97 E-value=6.8e-31 Score=230.66 Aligned_cols=154 Identities=23% Similarity=0.265 Sum_probs=125.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~ 68 (184)
.|+|+++|++|+|.+++ ++.+||+||++. +.. .|+.+++.... ..+.+++.+.++.+++.+...
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~ 464 (582)
T 3b60_A 388 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 464 (582)
T ss_dssp HHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHH
T ss_pred HHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHH
Confidence 57999999999998865 236999999984 333 47888776432 345677888888888754332
Q ss_pred c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
. ++..+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+. +.|+|+|||+++.+.
T Consensus 465 ~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~- 543 (582)
T 3b60_A 465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE- 543 (582)
T ss_dssp HSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-
Confidence 1 245899999999999999999999999999999999999999999998764 689999999999986
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
.||++++|++|++++ .|+.++..
T Consensus 544 ~~d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b60_A 544 QADEIVVVEDGIIVE-RGTHSELL 566 (582)
T ss_dssp TCSEEEEEETTEEEE-EECHHHHH
T ss_pred hCCEEEEEECCEEEE-ecCHHHHH
Confidence 699999999999976 56665543
No 40
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.2e-30 Score=227.14 Aligned_cols=153 Identities=25% Similarity=0.274 Sum_probs=122.7
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh--cC-CCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL--FN-LPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 78 (184)
+|+|+++|++|+|.+ ...+||+||++. .....++.+++... .. ...+.+.++++.+++.+..+ +++.+||||
T Consensus 331 ~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGG 405 (538)
T 1yqt_A 331 MLAGVEEPTEGKIEW--DLTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYD-REVNELSGG 405 (538)
T ss_dssp HHHTSSCCSBCCCCC--CCCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTT-SBGGGCCHH
T ss_pred HHhCCCCCCCeEEEE--CceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhc-CChhhCCHH
Confidence 588999999999986 457999999874 22344555443321 11 13456788999999976554 689999999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC--CeEEEe
Q psy11928 79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN--QTIEEI 152 (184)
Q Consensus 79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~--g~i~~~ 152 (184)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++ |++..
T Consensus 406 e~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~- 484 (538)
T 1yqt_A 406 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGR- 484 (538)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE-
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEee-
Confidence 999999999999999999999999999999999999998753 78999999999999999999999986 55543
Q ss_pred cCChhHHH
Q psy11928 153 DGDFDDYR 160 (184)
Q Consensus 153 ~~~~~~~~ 160 (184)
.+++++..
T Consensus 485 ~g~~~~~~ 492 (538)
T 1yqt_A 485 ALPPMGMR 492 (538)
T ss_dssp ECCCEEHH
T ss_pred cCCHHHHH
Confidence 45554443
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.97 E-value=1.1e-30 Score=229.89 Aligned_cols=153 Identities=24% Similarity=0.327 Sum_probs=122.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC----CCHHHHHHHHhhCCCCcc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN----LPYEKARKQLGTFGLAGH 66 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~ 66 (184)
.|+|+++|++|+|.+++ ++++||+||++. +.. .|+.+++..... .+.+++.+.++.+++.+.
T Consensus 389 ~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~ 465 (595)
T 2yl4_A 389 LLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI--LFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAF 465 (595)
T ss_dssp HHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCC--CCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHH
T ss_pred HHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCc--ccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHH
Confidence 57999999999998765 236999999974 333 478888754321 356678888888887533
Q ss_pred ccc----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHH
Q psy11928 67 AHT----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLI 134 (184)
Q Consensus 67 ~~~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~ 134 (184)
... ++..+||||||||++|||||+.+|+++||||||++||+.++..+.+.+.+. +.|+|+||||++.+
T Consensus 466 ~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 545 (595)
T 2yl4_A 466 IRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTI 545 (595)
T ss_dssp HHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHH
T ss_pred HHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 211 134899999999999999999999999999999999999999999999764 68999999999998
Q ss_pred HhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 135 RDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 135 ~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
. .||++++|++|++++ .|+.++.
T Consensus 546 ~-~~d~i~~l~~G~i~~-~g~~~~l 568 (595)
T 2yl4_A 546 K-NANMVAVLDQGKITE-YGKHEEL 568 (595)
T ss_dssp H-HSSEEEEEETTEEEE-EECSCC-
T ss_pred H-cCCEEEEEECCEEEE-ECCHHHH
Confidence 7 499999999999976 4444443
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.97 E-value=2e-30 Score=227.51 Aligned_cols=155 Identities=26% Similarity=0.293 Sum_probs=122.9
Q ss_pred CcccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc
Q psy11928 1 MYAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH 68 (184)
Q Consensus 1 ~~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~ 68 (184)
+.|+|+++|++|+|.+++ ++++||+||++. +.. .|+.+++.... ....+++.+.++..++.+...
T Consensus 385 ~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
T 4a82_A 385 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI--LFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIM 461 (578)
T ss_dssp TTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC--CCS-SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCc--cCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 368999999999999875 346999999974 333 37888775432 234555666666665543221
Q ss_pred ----------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 69 ----------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 69 ----------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
.++..+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+. ++|+|+||||++.+..
T Consensus 462 ~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 541 (578)
T 4a82_A 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541 (578)
T ss_dssp TSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT
T ss_pred hCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 1245799999999999999999999999999999999999999999998764 5799999999999865
Q ss_pred hcCeEEEEeCCeEEEecCChhHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||++++|++|++++ .|+.++..
T Consensus 542 -~d~i~~l~~G~i~~-~g~~~el~ 563 (578)
T 4a82_A 542 -ADKIVVIENGHIVE-TGTHRELI 563 (578)
T ss_dssp -CSEEEEEETTEEEE-EECHHHHH
T ss_pred -CCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999986 66666554
No 43
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1.6e-30 Score=228.95 Aligned_cols=153 Identities=25% Similarity=0.270 Sum_probs=122.4
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh-c-C-CCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL-F-N-LPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 78 (184)
.|+|+++|++|+|.+ ...+||+||++. .....++.+++... . . ...+.+.++++.+|+.+..+ +++++||||
T Consensus 401 ~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGG 475 (607)
T 3bk7_A 401 MLAGVEEPTEGKVEW--DLTVAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGG 475 (607)
T ss_dssp HHHTSSCCSBSCCCC--CCCEEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTT-SBGGGCCHH
T ss_pred HHhcCCCCCceEEEE--eeEEEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhc-CChhhCCHH
Confidence 578999999999986 457999999874 22344555544321 0 0 12355778899999986554 689999999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC--CeEEEe
Q psy11928 79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN--QTIEEI 152 (184)
Q Consensus 79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~--g~i~~~ 152 (184)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++ |.+..
T Consensus 476 e~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~- 554 (607)
T 3bk7_A 476 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR- 554 (607)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE-
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEe-
Confidence 999999999999999999999999999999999999998753 78999999999999999999999985 65543
Q ss_pred cCChhHHH
Q psy11928 153 DGDFDDYR 160 (184)
Q Consensus 153 ~~~~~~~~ 160 (184)
.+++.+..
T Consensus 555 ~g~p~~~~ 562 (607)
T 3bk7_A 555 ALPPMGMR 562 (607)
T ss_dssp ECCCEEHH
T ss_pred cCCHHHHH
Confidence 45554443
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.4e-30 Score=229.34 Aligned_cols=154 Identities=23% Similarity=0.240 Sum_probs=123.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.|+|+++|++|+|.+++ ++++||+||++. +. ..|+.+++.... ..+.+++.+.++.+++.+....
T Consensus 400 ~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (598)
T 3qf4_B 400 LLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI--LF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKH 476 (598)
T ss_dssp HHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC--CC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHT
T ss_pred HHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHh
Confidence 57899999999999875 346999999974 33 347888775421 2334556677777666543322
Q ss_pred ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
.+..+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+. +.|+|+|||+++.+..
T Consensus 477 ~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~- 555 (598)
T 3qf4_B 477 LPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN- 555 (598)
T ss_dssp STTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-
T ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-
Confidence 123789999999999999999999999999999999999999999998764 7899999999999976
Q ss_pred cCeEEEEeCCeEEEecCChhHHH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDDYR 160 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~~~ 160 (184)
||+|++|++|++++ .|+.++..
T Consensus 556 ~d~i~~l~~G~i~~-~g~~~~l~ 577 (598)
T 3qf4_B 556 ADLIIVLRDGEIVE-MGKHDELI 577 (598)
T ss_dssp CSEEEEECSSSEEE-CSCHHHHH
T ss_pred CCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999986 67766654
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=3.1e-30 Score=226.72 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=121.8
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCC-------
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFG------- 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~------- 62 (184)
.|+|+++|++|+|.+++ +.++||+||++. +. ..|+.+++.... ....+++.+.++..+
T Consensus 388 ~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 464 (587)
T 3qf4_A 388 LIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV--LF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS 464 (587)
T ss_dssp TTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCC--CC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHT
T ss_pred HHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCc--Cc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 58999999999999865 346999999984 33 337778775322 233444444444443
Q ss_pred ----CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 63 ----LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 63 ----l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
++.... +++.+||||||||++||||++.+|+++||||||++||+.+...+.+.+++. ++|+|+|||+++.+.
T Consensus 465 l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~- 542 (587)
T 3qf4_A 465 LPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL- 542 (587)
T ss_dssp SSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-
T ss_pred cccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-
Confidence 333333 467899999999999999999999999999999999999999999998764 689999999999986
Q ss_pred hcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
.||+|++|++|++++ .|+.++..+
T Consensus 543 ~~d~i~vl~~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 543 LADKILVLHEGKVAG-FGTHKELLE 566 (587)
T ss_dssp TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 799999999999986 566666543
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.5e-30 Score=224.11 Aligned_cols=142 Identities=19% Similarity=0.237 Sum_probs=117.6
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcC----CCHHHHHHHHhhCCCCcccccccccCCCh
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN----LPYEKARKQLGTFGLAGHAHTIKMKDLSG 77 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 77 (184)
.|+|+++|++|+|... ...++|+||+... ....++.+++..... .....+.++++.+++.+..+ +++.+|||
T Consensus 313 ~l~Gl~~p~~G~i~~~-~~~i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSG 388 (538)
T 3ozx_A 313 ILVGEITADEGSVTPE-KQILSYKPQRIFP--NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-SNVNDLSG 388 (538)
T ss_dssp HHTTSSCCSBCCEESS-CCCEEEECSSCCC--CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-SBGGGCCH
T ss_pred HHhCCCCCCCcEEEEC-CeeeEeechhccc--ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-CChhhCCH
Confidence 5899999999999865 4579999998642 224566665543211 12345678899999987665 58999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|+++
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999988653 689999999999999999999999863
No 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-29 Score=221.47 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=121.9
Q ss_pred cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc-C--CCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928 2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-N--LPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 78 (184)
.|+|+++|++|+.. ....++|+||+....+ ..++.+++.... . .....+.++++.+++.+..+ +++.+||||
T Consensus 397 ~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~~~--~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSGG 471 (608)
T 3j16_B 397 LLAGALKPDEGQDI--PKLNVSMKPQKIAPKF--PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-QEVQHLSGG 471 (608)
T ss_dssp HHHTSSCCSBCCCC--CSCCEEEECSSCCCCC--CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSS-SBSSSCCHH
T ss_pred HHhcCCCCCCCcCc--cCCcEEEecccccccC--CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhc-CChhhCCHH
Confidence 57999999999852 2457999999864222 335555543221 1 23455678899999987665 589999999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC--CeEEEe
Q psy11928 79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN--QTIEEI 152 (184)
Q Consensus 79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~--g~i~~~ 152 (184)
|||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||+++|++ |++..
T Consensus 472 qkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~- 550 (608)
T 3j16_B 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH- 550 (608)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE-
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe-
Confidence 999999999999999999999999999999999998888653 78999999999999999999999986 77764
Q ss_pred cCChhHHH
Q psy11928 153 DGDFDDYR 160 (184)
Q Consensus 153 ~~~~~~~~ 160 (184)
.+++.+..
T Consensus 551 ~g~p~~~~ 558 (608)
T 3j16_B 551 ARAPESLL 558 (608)
T ss_dssp CCCCEEHH
T ss_pred cCChHHHh
Confidence 55555443
No 48
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=3.1e-29 Score=228.87 Aligned_cols=101 Identities=33% Similarity=0.633 Sum_probs=92.7
Q ss_pred HHHHHHHHhhCCCCccc-ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11928 51 YEKARKQLGTFGLAGHA-HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSH 129 (184)
Q Consensus 51 ~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH 129 (184)
.+++.++++.+|+.... .++++++|||||||||+|||||+.+|++|||||||||||+.++..+.+.|++++.|||+|||
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISH 956 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH 956 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECS
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEEC
Confidence 45678899999997532 34589999999999999999999999999999999999999999999999999899999999
Q ss_pred CHHHHHhhcCeEEEEeCCeEEE
Q psy11928 130 DERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~~g~i~~ 151 (184)
|++++..+||++++|++|+++.
T Consensus 957 D~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 957 SAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp CHHHHTTTCCEEECCBTTBCCC
T ss_pred CHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999864
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=1.7e-28 Score=213.64 Aligned_cols=142 Identities=22% Similarity=0.216 Sum_probs=112.4
Q ss_pred cccCcccCCceeE---------EecC-------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHHHH
Q psy11928 2 YAHCDLQPQQGEL---------KKNH-------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~p~~G~i---------~~~~-------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 57 (184)
+|+|+++|++|++ .+.+ ...+++++|... +.+. ..++.+++.... ..+++.++
T Consensus 66 ~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~v~e~~~~~~--~~~~~~~~ 142 (538)
T 1yqt_A 66 ILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAV-KGKVIELLKKAD--ETGKLEEV 142 (538)
T ss_dssp HHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGC-CSBHHHHHHHHC--SSSCHHHH
T ss_pred HHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhh-hccHHHHHhhhh--HHHHHHHH
Confidence 6899999999995 1111 235788888642 1111 125555543221 12457789
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI 134 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 134 (184)
++.+|++...+ +++++|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++ +.|||+||||++++
T Consensus 143 l~~lgl~~~~~-~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 143 VKALELENVLE-REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221 (538)
T ss_dssp HHHTTCTTTTT-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHcCCChhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999987664 589999999999999999999999999999999999999999999988754 78999999999999
Q ss_pred HhhcCeEEEEeCC
Q psy11928 135 RDTECTLWVIENQ 147 (184)
Q Consensus 135 ~~~~~~i~~l~~g 147 (184)
..+||++++|++|
T Consensus 222 ~~~~dri~vl~~~ 234 (538)
T 1yqt_A 222 DYLSDIIHVVYGE 234 (538)
T ss_dssp HHHCSEEEEEEEE
T ss_pred HHhCCEEEEEcCc
Confidence 9999999999865
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=3.5e-28 Score=214.02 Aligned_cols=143 Identities=22% Similarity=0.235 Sum_probs=113.8
Q ss_pred cccCcccCCceeE---------Eec-------------CCeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHHHH
Q psy11928 2 YAHCDLQPQQGEL---------KKN-------------HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ 57 (184)
Q Consensus 2 ~~~G~~~p~~G~i---------~~~-------------~~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 57 (184)
+|+|+++|++|++ .+. .+..+++++|... +.+. ..++.+++... ...+++.++
T Consensus 136 iL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~-~~tv~e~l~~~--~~~~~~~~~ 212 (607)
T 3bk7_A 136 ILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV-KGKVRELLKKV--DEVGKFEEV 212 (607)
T ss_dssp HHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC-CSBHHHHHHHT--CCSSCHHHH
T ss_pred HHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc-cccHHHHhhhh--HHHHHHHHH
Confidence 6899999999995 111 1235788888642 1111 12566655431 112457789
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI 134 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 134 (184)
++.+|++...+ +++++|||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++ +.|||+||||++++
T Consensus 213 L~~lgL~~~~~-~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 213 VKELELENVLD-RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL 291 (607)
T ss_dssp HHHTTCTTGGG-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHcCCCchhC-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHH
Confidence 99999987665 689999999999999999999999999999999999999999999988765 78999999999999
Q ss_pred HhhcCeEEEEeCCe
Q psy11928 135 RDTECTLWVIENQT 148 (184)
Q Consensus 135 ~~~~~~i~~l~~g~ 148 (184)
..+||++++|+++.
T Consensus 292 ~~~adri~vl~~~~ 305 (607)
T 3bk7_A 292 DYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHCSEEEEEESCT
T ss_pred HhhCCEEEEECCCc
Confidence 99999999998653
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.95 E-value=9.6e-28 Score=226.03 Aligned_cols=152 Identities=25% Similarity=0.328 Sum_probs=119.4
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCc----
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAG---- 65 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~---- 65 (184)
.|+|+++|++|+|.+++ +..|||+||++. +.. .|+.+++.... ....+++.+.++..++.+
T Consensus 435 ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~ 511 (1284)
T 3g5u_A 435 LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV--LFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511 (1284)
T ss_dssp HTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCC--CCS-SCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCc--cCC-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 58899999999999875 346999999984 433 47888775432 234455555444443322
Q ss_pred -------ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 66 -------HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 66 -------~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
... .+..+||||||||++||||++.+|+|||||||||+||+.+...+.+.+.+. ++|+|+|||+++.+..
T Consensus 512 l~~g~~t~~~-~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 512 LPHQFDTLVG-ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp STTGGGCCCS-SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT
T ss_pred cccccccccc-CCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 122 256799999999999999999999999999999999999999999888653 7899999999999976
Q ss_pred hcCeEEEEeCCeEEEecCChhHH
Q psy11928 137 TECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 137 ~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
||+|++|++|++++ .|+.+++
T Consensus 591 -~d~i~vl~~G~i~~-~g~~~~l 611 (1284)
T 3g5u_A 591 -ADVIAGFDGGVIVE-QGNHDEL 611 (1284)
T ss_dssp -CSEEEECSSSCCCC-EECHHHH
T ss_pred -CCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999975 5665554
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.95 E-value=6.6e-28 Score=227.13 Aligned_cols=155 Identities=25% Similarity=0.326 Sum_probs=120.0
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCCHHHHHHHHhhCCCCccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLPYEKARKQLGTFGLAGHA 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~ 67 (184)
.|+|+++|++|+|.+++ +.++||+||++. +. ..|+.+++.... ..+.+++.+.++..++.+..
T Consensus 1078 ~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i 1154 (1284)
T 3g5u_A 1078 LLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI--LF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFI 1154 (1284)
T ss_dssp HHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCC--CC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCc--cc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHH
Confidence 47899999999999764 457999999984 32 457777764321 22344555554444443211
Q ss_pred c----------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHH
Q psy11928 68 H----------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIR 135 (184)
Q Consensus 68 ~----------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~ 135 (184)
. .....+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++. +.|+|+||||++.+.
T Consensus 1155 ~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~ 1234 (1284)
T 3g5u_A 1155 DSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ 1234 (1284)
T ss_dssp SSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG
T ss_pred HhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 1 1135689999999999999999999999999999999999999999999765 579999999999996
Q ss_pred hhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
. ||+|++|++|++++ .|+.+++.+
T Consensus 1235 ~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1235 N-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp S-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred c-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 5 99999999999987 566655443
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.95 E-value=6.5e-28 Score=227.65 Aligned_cols=155 Identities=23% Similarity=0.280 Sum_probs=124.6
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHA 67 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~ 67 (184)
.|.|+++|++|+|.+++ |.+||+|||+|. +. ..|+.+++... ...+.+++.+.++..++.+..
T Consensus 1124 lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~--LF-~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I 1200 (1321)
T 4f4c_A 1124 LLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT--LF-DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFI 1200 (1321)
T ss_dssp HHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCC--CC-SEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHH
T ss_pred HHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCE--ee-CccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHH
Confidence 47899999999999875 467999999984 32 34677776421 234567777777777664322
Q ss_pred cc----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHH
Q psy11928 68 HT----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIR 135 (184)
Q Consensus 68 ~~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~ 135 (184)
.. ..-.+||||||||++|||||+.+|+|||||||||+||+++.+.+.+.|++. ++|+|+|+|.++-+.
T Consensus 1201 ~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp HTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT
T ss_pred HcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH
Confidence 11 134679999999999999999999999999999999999999999999875 679999999999987
Q ss_pred hhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 136 DTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 136 ~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
. ||+|++|++|+|++ .|+++++.+
T Consensus 1281 ~-aD~I~Vld~G~IvE-~Gth~eLl~ 1304 (1321)
T 4f4c_A 1281 N-ADCIAVVSNGTIIE-KGTHTQLMS 1304 (1321)
T ss_dssp T-CSEEEEESSSSEEE-EECHHHHHH
T ss_pred h-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 5 89999999999988 567666554
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=8.6e-27 Score=212.84 Aligned_cols=139 Identities=24% Similarity=0.379 Sum_probs=115.1
Q ss_pred EEEEEecCCCCCCCccCCHHHHHHH-hcCCCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEee
Q psy11928 21 RIGRFDQHSGEHLTAEETPAEYLQR-LFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILD 99 (184)
Q Consensus 21 ~ig~v~q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlD 99 (184)
+++|++|++. .+....++.+++.. ..+. .+++.++++.+|+.....++++++|||||||||+|||||+.+|++||||
T Consensus 496 ~~~~v~q~~~-~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD 573 (986)
T 2iw3_A 496 RTVYVEHDID-GTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD 573 (986)
T ss_dssp CEEETTCCCC-CCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred eEEEEccccc-ccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4788888642 23445677776653 1122 5678889999999633334689999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 100 EPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 100 EPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
|||||||+.++.++.++|++.+.|||+||||++++..+||++++|++|+++.+.|+++++.+
T Consensus 574 EPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 574 EPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp STTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999988778999999999999999999999999998756788776643
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.94 E-value=4.7e-27 Score=221.85 Aligned_cols=152 Identities=24% Similarity=0.267 Sum_probs=122.3
Q ss_pred cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccccc
Q psy11928 2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHT 69 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~ 69 (184)
.|.|+++|++|+|.+++ +.+||||+|+|. + ...|+.+++.... ..+.+++.+.++..++.++...
T Consensus 463 ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~--L-f~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~ 539 (1321)
T 4f4c_A 463 LLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA--L-FNCTIEENISLGKEGITREEMVAACKMANAEKFIKT 539 (1321)
T ss_dssp HHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--C-CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHH
T ss_pred HhccccccccCcccCCCccchhccHHHHhhcccccCCcce--e-eCCchhHHHhhhcccchHHHHHHHHHHccchhHHHc
Confidence 47899999999999875 357999999984 3 3457788876432 3456777777766665432211
Q ss_pred ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928 70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~ 137 (184)
.+-.+||||||||++||||++.+|+|+|||||||+||+.+...+.+.|.+. ++|+|+|||++..+. .
T Consensus 540 lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~ 618 (1321)
T 4f4c_A 540 LPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-N 618 (1321)
T ss_dssp STTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-T
T ss_pred CCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-h
Confidence 145789999999999999999999999999999999999999999999765 789999999999986 5
Q ss_pred cCeEEEEeCCeEEEecCChhH
Q psy11928 138 ECTLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 138 ~~~i~~l~~g~i~~~~~~~~~ 158 (184)
||+|++|++|+|++ .|+.++
T Consensus 619 aD~Iivl~~G~ive-~Gth~e 638 (1321)
T 4f4c_A 619 ADLIISCKNGQVVE-VGDHRA 638 (1321)
T ss_dssp CSEEEEEETTEEEE-EECHHH
T ss_pred CCEEEEeeCCeeec-cCCHHH
Confidence 99999999999987 555544
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=5.3e-27 Score=204.11 Aligned_cols=143 Identities=23% Similarity=0.255 Sum_probs=109.7
Q ss_pred cccCcccCCceeEE-----------ecC-------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHH
Q psy11928 2 YAHCDLQPQQGELK-----------KNH-------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR 55 (184)
Q Consensus 2 ~~~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~ 55 (184)
+|+|+++|++|+|. +.+ ...+...+|... +.+. ..++.+.+.... ..+++.
T Consensus 44 iL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~~~--~~~~~~ 120 (538)
T 3ozx_A 44 ILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL-KGTVNEILTKID--ERGKKD 120 (538)
T ss_dssp HHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC-CSBHHHHHHHHC--CSSCHH
T ss_pred HHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc-cCcHHHHhhcch--hHHHHH
Confidence 68999999999982 211 123444444432 1111 124444333221 123467
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL 133 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~ 133 (184)
++++.+|+....+ +++.+|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++ +.|||+||||+++
T Consensus 121 ~~l~~l~l~~~~~-~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~ 199 (538)
T 3ozx_A 121 EVKELLNMTNLWN-KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIV 199 (538)
T ss_dssp HHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHH
T ss_pred HHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHH
Confidence 8899999987665 589999999999999999999999999999999999999999999998766 7899999999999
Q ss_pred HHhhcCeEEEEeCCe
Q psy11928 134 IRDTECTLWVIENQT 148 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~ 148 (184)
+..+||+++++++|.
T Consensus 200 ~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 200 LDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHCSEEEEEEEET
T ss_pred HHhhCCEEEEecCCc
Confidence 999999999998653
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-26 Score=204.61 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=90.4
Q ss_pred CHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928 50 PYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVII 126 (184)
Q Consensus 50 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii 126 (184)
..+++.++++.+|+....+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.++++ +.|||+
T Consensus 198 ~~~~~~~~l~~~gl~~~~~-~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 198 SPEDVKRYIKILQLENVLK-RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp CHHHHHHHHHHHTCTGGGG-SCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred HHHHHHHHHHHcCCcchhC-CChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4567889999999987665 589999999999999999999999999999999999999999999998765 679999
Q ss_pred EecCHHHHHhhcCeEEEEeCCeE
Q psy11928 127 VSHDERLIRDTECTLWVIENQTI 149 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l~~g~i 149 (184)
||||++++..+||++++|.+|..
T Consensus 277 vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 277 VEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp ECSCHHHHHHHCSEEEEEESCTT
T ss_pred EeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999987653
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=2e-26 Score=205.23 Aligned_cols=102 Identities=25% Similarity=0.299 Sum_probs=87.9
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecC
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd 130 (184)
.+++.+|+.+...++++++|||||||||+|||||+.+|+ +|||||||+|||+.++.+++++|+++ +.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 358889997653346899999999999999999999998 99999999999999999999988654 6899999999
Q ss_pred HHHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928 131 ERLIRDTECTLWVI------ENQTIEEIDGDFDDY 159 (184)
Q Consensus 131 ~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~ 159 (184)
++++. .||++++| ++|+++. .++++++
T Consensus 264 ~~~~~-~~d~ii~l~~g~~~~~G~i~~-~g~~~~~ 296 (670)
T 3ux8_A 264 EDTML-AADYLIDIGPGAGIHGGEVVA-AGTPEEV 296 (670)
T ss_dssp HHHHH-HCSEEEEECSSSGGGCCSEEE-EECHHHH
T ss_pred HHHHh-hCCEEEEecccccccCCEEEE-ecCHHHH
Confidence 99876 59999999 7888865 5555544
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=4.5e-24 Score=190.02 Aligned_cols=105 Identities=26% Similarity=0.371 Sum_probs=88.6
Q ss_pred HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCC---EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPD---VIILDEPTNNLDIESIDALADAINEY---KGGVI 125 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~---illlDEPt~~LD~~~~~~l~~~l~~~---~~tii 125 (184)
.+..+.+..+++.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|+++ +.|||
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3456678889986543346899999999999999999998874 99999999999999999999988654 78999
Q ss_pred EEecCHHHHHhhcCeEEEE------eCCeEEEecCChhH
Q psy11928 126 IVSHDERLIRDTECTLWVI------ENQTIEEIDGDFDD 158 (184)
Q Consensus 126 ivsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~ 158 (184)
+||||++++. .||++++| ++|+++. .|++++
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~-~g~~~~ 637 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEE 637 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEEEE-EECHHH
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE-ecCHHH
Confidence 9999999885 69999999 8899975 455443
No 60
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.90 E-value=1.6e-23 Score=153.91 Aligned_cols=79 Identities=35% Similarity=0.471 Sum_probs=70.1
Q ss_pred cccccCCChhHHHHHHHH------HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928 69 TIKMKDLSGGQKARVALA------ELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC 139 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~la------ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~ 139 (184)
++++++||||||||++|| ||++.+|+++||||||+|||+.++..+.+.+.+. +.|||+||||.+ +...|+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 357899999999999886 8999999999999999999999999999999764 579999999994 567999
Q ss_pred eEEEE--eCCe
Q psy11928 140 TLWVI--ENQT 148 (184)
Q Consensus 140 ~i~~l--~~g~ 148 (184)
+++++ ++|.
T Consensus 131 ~ii~l~~~~g~ 141 (148)
T 1f2t_B 131 HVIRISLENGS 141 (148)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEcCCCe
Confidence 99999 4553
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=3.4e-23 Score=188.70 Aligned_cols=106 Identities=25% Similarity=0.366 Sum_probs=91.0
Q ss_pred HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVI 125 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tii 125 (184)
.++.+.|+.+|+......+++.+|||||||||+|||+|+.+| ++|||||||+|||+.++..+++.|+++ |.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 456778999999754434689999999999999999999875 799999999999999999999988754 78999
Q ss_pred EEecCHHHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928 126 IVSHDERLIRDTECTLWVI------ENQTIEEIDGDFDDY 159 (184)
Q Consensus 126 ivsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~ 159 (184)
+||||++++.. ||+|++| ++|+++. .|+++++
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~-~Gtpeel 900 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVA-TGTPEEI 900 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEEEE-EESHHHH
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEEEE-EcCHHHH
Confidence 99999999865 9999999 8899975 5666554
No 62
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=6.1e-23 Score=170.98 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=74.0
Q ss_pred ccccCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 70 IKMKDLSGGQKARVALAELTL------NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~------~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
+++.+|||||||||+||+||+ .+|+++||||||+|||+.++..+.+.|.++ +.|||+||||+++ ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 578999999999999999999 799999999999999999999999998764 6899999999998 467999
Q ss_pred EEEEeCCeEE
Q psy11928 141 LWVIENQTIE 150 (184)
Q Consensus 141 i~~l~~g~i~ 150 (184)
+++|++|+++
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999999885
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=1.1e-22 Score=185.32 Aligned_cols=105 Identities=27% Similarity=0.360 Sum_probs=90.4
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEe
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEY---KGGVIIVS 128 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivs 128 (184)
..+.+..+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+..+.++.+.|+++ |.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34578889997543346899999999999999999999887 99999999999999999999999765 67999999
Q ss_pred cCHHHHHhhcCeEEEE------eCCeEEEecCChhHHH
Q psy11928 129 HDERLIRDTECTLWVI------ENQTIEEIDGDFDDYR 160 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~~ 160 (184)
||++++.. ||+|++| ++|+++. .|+++++.
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~iv~-~G~~~e~~ 559 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRVVF-QGTVDELL 559 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEEEE-EECHHHHH
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEEEE-eechhhhh
Confidence 99999875 9999999 7888864 67776654
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=1.1e-22 Score=184.02 Aligned_cols=106 Identities=24% Similarity=0.297 Sum_probs=90.5
Q ss_pred HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcC---CCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEE
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA---PDVIILDEPTNNLDIESIDALADAINE---YKGGVI 125 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tii 125 (184)
.++.++++.+|+......+++.+|||||||||.||++|+.+ |++|||||||+|||+.++..+.+.|++ .+.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34677899999976433468999999999999999999996 799999999999999999999988865 378999
Q ss_pred EEecCHHHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928 126 IVSHDERLIRDTECTLWVI------ENQTIEEIDGDFDDY 159 (184)
Q Consensus 126 ivsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~ 159 (184)
+||||++++ ..||++++| ++|+++. .++++++
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~-~g~~~el 825 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVA-QGTPAEV 825 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSEEE-EECHHHH
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEE-EcCHHHH
Confidence 999999999 689999999 6888864 4555443
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=4.2e-22 Score=181.21 Aligned_cols=104 Identities=26% Similarity=0.364 Sum_probs=88.2
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVII 126 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii 126 (184)
+..++++.+|+......+++.+|||||||||+||++|+.+| ++|||||||+|||+.++..+++.|.++ +.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999762334589999999999999999999865 999999999999999999999988653 789999
Q ss_pred EecCHHHHHhhcCeEEEE------eCCeEEEecCChhH
Q psy11928 127 VSHDERLIRDTECTLWVI------ENQTIEEIDGDFDD 158 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~ 158 (184)
||||++++. .||++++| ++|+++. .+++++
T Consensus 904 isHdl~~i~-~aDrIivL~p~gG~~~G~Iv~-~g~~~e 939 (972)
T 2r6f_A 904 IEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEE 939 (972)
T ss_dssp ECCCHHHHT-TCSEEEEECSSSTTSCCSEEE-EESHHH
T ss_pred EcCCHHHHH-hCCEEEEEcCCCCCCCCEEEE-ecCHHH
Confidence 999999985 79999999 6888865 444433
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=5.8e-22 Score=180.80 Aligned_cols=106 Identities=29% Similarity=0.364 Sum_probs=89.4
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINE---YKGGVII 126 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiii 126 (184)
+..++++.+|+......+++.+|||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|.+ .+.|||+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34678999999752334589999999999999999999865 99999999999999999999998865 3789999
Q ss_pred EecCHHHHHhhcCeEEEE------eCCeEEEecCChhHHH
Q psy11928 127 VSHDERLIRDTECTLWVI------ENQTIEEIDGDFDDYR 160 (184)
Q Consensus 127 vsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~~ 160 (184)
||||++++. .||++++| ++|+++. .++++++.
T Consensus 922 isHdl~~i~-~aDrIivL~p~gg~~~G~Iv~-~G~~~el~ 959 (993)
T 2ygr_A 922 IEHNLDVIK-TSDWIIDLGPEGGAGGGTVVA-QGTPEDVA 959 (993)
T ss_dssp ECCCHHHHT-TCSEEEEEESSSTTSCSEEEE-EECHHHHH
T ss_pred EcCCHHHHH-hCCEEEEECCCcCCCCCEEEE-ecCHHHHH
Confidence 999999984 79999999 6788864 55655543
No 67
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.2e-25 Score=187.08 Aligned_cols=150 Identities=17% Similarity=0.096 Sum_probs=116.2
Q ss_pred cccCcccCCce-e-EEecC--CeEEEEEecCCC-----CCCCccCCHHHHHHHh-cC-CCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQG-E-LKKNH--RLRIGRFDQHSG-----EHLTAEETPAEYLQRL-FN-LPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G-~-i~~~~--~~~ig~v~q~~~-----~~l~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
+|+|+.+|++| + |.+++ ++.++++||++. ..+++.+++ +.... .+ ...+++.++++.+|++...+
T Consensus 157 ~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni--~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-- 232 (460)
T 2npi_A 157 TLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT--WGQSLTSGATLLHNKQPMVKNFGLERINE-- 232 (460)
T ss_dssp HHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT--CSCBCBSSCCSSCCBCCEECCCCSSSGGG--
T ss_pred HHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh--cccccccCcchHHHHHHHHHHhCCCcccc--
Confidence 58899999999 8 88764 567999999862 123344342 11110 11 11123456788899976442
Q ss_pred cccCCChhHHHHHHHHHH--HhcCCCE----EEeeC-CCCCCCHHHHHHHHHHHHhcCcEEEEEecCHH------HHHhh
Q psy11928 71 KMKDLSGGQKARVALAEL--TLNAPDV----IILDE-PTNNLDIESIDALADAINEYKGGVIIVSHDER------LIRDT 137 (184)
Q Consensus 71 ~~~~LSgG~kqrv~lara--l~~~p~i----lllDE-Pt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~------~~~~~ 137 (184)
+.+|||||||||+|||| |+.+|++ +|||| ||++||+. ...+.+++++++.|+|+||||.+ ++..+
T Consensus 233 -~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 233 -NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHH
T ss_pred -hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHh
Confidence 78999999999999999 9999999 99999 99999999 88888888888999999999987 78889
Q ss_pred cCe-----EEEEe-CCeEEEecCChhHH
Q psy11928 138 ECT-----LWVIE-NQTIEEIDGDFDDY 159 (184)
Q Consensus 138 ~~~-----i~~l~-~g~i~~~~~~~~~~ 159 (184)
||+ +++|+ +|+++ .++.+..
T Consensus 311 ~dr~~~~~vi~l~k~G~iv--~g~~~~~ 336 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS--AVDDVYK 336 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC--CCCHHHH
T ss_pred cccccCCEEEEEeCCCcEE--ECCHHHH
Confidence 999 99999 99986 5555544
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.86 E-value=1.3e-21 Score=178.55 Aligned_cols=103 Identities=25% Similarity=0.315 Sum_probs=87.7
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA--PDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~--p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 131 (184)
.+..+|++....++++.+|||||+|||.||++|..+ |++|||||||++||+...++|.+.|++ .|.|||+||||+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 477889875423468999999999999999999998 599999999999999999999988764 478999999999
Q ss_pred HHHHhhcCeEEEE------eCCeEEEecCChhHHHH
Q psy11928 132 RLIRDTECTLWVI------ENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 132 ~~~~~~~~~i~~l------~~g~i~~~~~~~~~~~~ 161 (184)
+++. .||+|++| ++|+++ +.++++++.+
T Consensus 584 ~~i~-~ADrIi~Lgp~aG~~gG~iv-~~G~~~e~~~ 617 (993)
T 2ygr_A 584 DTIE-HADWIVDIGPGAGEHGGRIV-HSGPYDELLR 617 (993)
T ss_dssp HHHH-TCSEEEEECSSSGGGCCSCC-EEECHHHHHH
T ss_pred HHHH-hCCEEEEecCccccCCCEEE-EeeCHHHhhh
Confidence 9986 69999999 578876 4677776654
No 69
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.86 E-value=1.3e-21 Score=177.94 Aligned_cols=101 Identities=25% Similarity=0.297 Sum_probs=86.0
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 131 (184)
.|..+||.....++++.+|||||+|||.||++|..+| ++|||||||+|||+...+++.+.|++ .|.|||+||||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4788899754234689999999999999999999985 99999999999999999999988765 478999999999
Q ss_pred HHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928 132 RLIRDTECTLWVI------ENQTIEEIDGDFDDY 159 (184)
Q Consensus 132 ~~~~~~~~~i~~l------~~g~i~~~~~~~~~~ 159 (184)
+++. .||+|++| ++|+++. .++++++
T Consensus 567 ~~i~-~ADrIi~LgpgaG~~gG~iv~-~G~~~e~ 598 (972)
T 2r6f_A 567 DTML-AADYLIDIGPGAGIHGGEVVA-AGTPEEV 598 (972)
T ss_dssp HHHH-SCSEEEEECSSSGGGCCSEEE-EECTTTT
T ss_pred HHHH-hCCEEEEeCCCccCCCCEEEE-ecCHHHH
Confidence 9986 69999999 6788864 5555444
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=3.9e-21 Score=173.94 Aligned_cols=102 Identities=25% Similarity=0.279 Sum_probs=86.5
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE 131 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 131 (184)
.+..+|+.....++++.+|||||+|||.||++|+.+| .++||||||++||+..++++.+.+++ .+.|||+||||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5778999754234689999999999999999999999 49999999999999999999987754 478999999999
Q ss_pred HHHHhhcCeEEEE------eCCeEEEecCChhHHH
Q psy11928 132 RLIRDTECTLWVI------ENQTIEEIDGDFDDYR 160 (184)
Q Consensus 132 ~~~~~~~~~i~~l------~~g~i~~~~~~~~~~~ 160 (184)
+++. .||+|++| ++|+++. .++++++.
T Consensus 442 ~~l~-~aD~ii~lgpgaG~~~G~iv~-~g~~~~~~ 474 (842)
T 2vf7_A 442 DVIR-RADWLVDVGPEAGEKGGEILY-SGPPEGLK 474 (842)
T ss_dssp HHHT-TCSEEEEECSSSGGGCCSEEE-EECGGGGG
T ss_pred HHHH-hCCEEEEeCCCcccCCCEEEE-ecCHHHHH
Confidence 9875 69999999 6788764 56665543
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.84 E-value=8.1e-21 Score=159.69 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=77.6
Q ss_pred CChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEE----eC
Q psy11928 75 LSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVI----EN 146 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l----~~ 146 (184)
||||||||++||++|+.+| ++|||||||||||+.++.++.+.|+++ +.|||+||||++++. .||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999887 589999999998874 79999999 89
Q ss_pred CeEEEecC--ChhHHHHHHHHHhhh
Q psy11928 147 QTIEEIDG--DFDDYRKELLEALGE 169 (184)
Q Consensus 147 g~i~~~~~--~~~~~~~~~~~~~~~ 169 (184)
|+++.... ..+.-.+++.+.+.+
T Consensus 375 G~~~~~~~~l~~~~~~~ei~~~~~g 399 (415)
T 4aby_A 375 GRTVSHVRLLTGDERLEEIARMLSG 399 (415)
T ss_dssp TEEEEEEEECCSHHHHHHHHHHHHS
T ss_pred CceEEEEEECCchhhHHHHHHHhcC
Confidence 98754211 223334444444433
No 72
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.81 E-value=4.5e-19 Score=133.25 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=73.4
Q ss_pred ccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEE
Q psy11928 70 IKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
+++..||||||||++||++++. +|+++||||||++||+.++..+.++|++. +.++|+|||+.... ..||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 4689999999999999999974 46999999999999999999999999875 46899999998765 57999875
Q ss_pred E--eCCeEEEecCChhHHH
Q psy11928 144 I--ENQTIEEIDGDFDDYR 160 (184)
Q Consensus 144 l--~~g~i~~~~~~~~~~~ 160 (184)
+ .+|.......+.+.+.
T Consensus 139 v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEETTEEEEEECCHHHHH
T ss_pred EEecCCEEEEEEEEcHHHH
Confidence 4 5675444445555444
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.79 E-value=3.1e-19 Score=147.08 Aligned_cols=75 Identities=35% Similarity=0.483 Sum_probs=66.1
Q ss_pred ccccCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928 70 IKMKDLSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 70 ~~~~~LSgG~kq------rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 140 (184)
+++.+||||||| |+++|++++.+|++|||||||+|||+..+..+.+.|.++ +.|||+||||.+ +...||+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~ 322 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADH 322 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCE
Confidence 578999999999 677888888999999999999999999999999998764 569999999966 5678999
Q ss_pred EEEEe
Q psy11928 141 LWVIE 145 (184)
Q Consensus 141 i~~l~ 145 (184)
++++.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98875
No 74
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.79 E-value=2e-19 Score=155.83 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=70.0
Q ss_pred ccccCC-ChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 70 IKMKDL-SGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 70 ~~~~~L-SgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
+++.+| ||||+|||+||++++.+| ++|||||||+|||+.++..+.+.|.++ +.|||+||||++.+. .||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 357788 999999999999999999 999999999999999999999988765 689999999999886 59999999
Q ss_pred eCC
Q psy11928 145 ENQ 147 (184)
Q Consensus 145 ~~g 147 (184)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=4.4e-19 Score=145.15 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=70.2
Q ss_pred ccccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeE--
Q psy11928 70 IKMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTL-- 141 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i-- 141 (184)
.++.+||+|||||++||++|+ .+|+++||||||++||+..+..+.+.+.+. +.+||+|||+.+ +...||++
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~ 293 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHG 293 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEE
Confidence 468999999999999999997 678999999999999999999999999876 569999999965 45679986
Q ss_pred EEEeCCeEE
Q psy11928 142 WVIENQTIE 150 (184)
Q Consensus 142 ~~l~~g~i~ 150 (184)
+++.+|...
T Consensus 294 v~~~~g~s~ 302 (322)
T 1e69_A 294 VTMVNGVSA 302 (322)
T ss_dssp EEESSSCEE
T ss_pred EEEeCCEEE
Confidence 778888654
No 76
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=2.6e-19 Score=135.15 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=76.4
Q ss_pred cccccCCChhHHHHHHHHHH-----HhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHhcCcEEEEEe---cCHHHHHhhc
Q psy11928 69 TIKMKDLSGGQKARVALAEL-----TLNAPDVIILDE--PTNNLDIESIDALADAINEYKGGVIIVS---HDERLIRDTE 138 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~lara-----l~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~tiiivs---Hd~~~~~~~~ 138 (184)
.+++.+||||||||++||+| ++.+|+++|||| ||++||+..++.+.+.+.+.+.|+|++| ||.+++..+|
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHH
Confidence 35789999999999999996 999999999999 9999999999999999988777788888 5999999999
Q ss_pred CeEEEEeCCeEEEec-CChhHHHHHHHHH
Q psy11928 139 CTLWVIENQTIEEID-GDFDDYRKELLEA 166 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~-~~~~~~~~~~~~~ 166 (184)
++ .+|++.++. .+.+++.+++.+.
T Consensus 151 ~r----~~~~i~~~~~~~r~~~~~~l~~~ 175 (178)
T 1ye8_A 151 RL----PGAVLIELTPENRDVILEDILSL 175 (178)
T ss_dssp TC----TTCEEEECCTTTTTTHHHHHHHH
T ss_pred hc----CCcEEEEecCcCHHHHHHHHHHH
Confidence 87 345554432 3344555554443
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.76 E-value=1.4e-18 Score=144.26 Aligned_cols=83 Identities=18% Similarity=0.096 Sum_probs=74.1
Q ss_pred ccccc-CCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhc
Q psy11928 69 TIKMK-DLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 69 ~~~~~-~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~ 138 (184)
.++++ .||||||||++||++|+ .+|+||||||||++||+..+..+.+.+.+...|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 44677 89999999999999999 8999999999999999999999999998877899999995 33 79
Q ss_pred CeEEEEeCCeEEEecCCh
Q psy11928 139 CTLWVIENQTIEEIDGDF 156 (184)
Q Consensus 139 ~~i~~l~~g~i~~~~~~~ 156 (184)
++++++++|++.. .+++
T Consensus 335 ~~i~~l~~G~i~~-~g~~ 351 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADE 351 (359)
T ss_dssp SEEEEEETTEEEE-CCCT
T ss_pred CEEEEEECCEEEe-cCCH
Confidence 9999999999975 4544
No 78
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.74 E-value=1.2e-20 Score=145.77 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=70.1
Q ss_pred cccCcccCCceeEEe--------cCCeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccccccc
Q psy11928 2 YAHCDLQPQQGELKK--------NHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHTIKM 72 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~--------~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~ 72 (184)
+|+|+ +|++|+|.. ..+..+||+||++..++.... ......... ....++.++++. |+
T Consensus 41 ~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~--~~~~~~~~~~~~~~~~~~~l~~-gl--------- 107 (208)
T 3b85_A 41 AKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYL--RPLHDALRDMVEPEVIPKLMEA-GI--------- 107 (208)
T ss_dssp HHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTT--HHHHHHHTTTSCTTHHHHHHHT-TS---------
T ss_pred HHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHH--HHHHHHHHHhccHHHHHHHHHh-CC---------
Confidence 57899 999999843 124568999997632221110 000111111 112334444443 22
Q ss_pred cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD 136 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 136 (184)
||||||+|||||+.+|++|||||||++ ++..+.+.|.++ +.||| ||||++++..
T Consensus 108 -----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 -----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp -----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred -----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 999999999999999999999999999 888888888775 56898 9999998764
No 79
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.71 E-value=5.9e-17 Score=134.93 Aligned_cols=75 Identities=31% Similarity=0.500 Sum_probs=66.8
Q ss_pred ccccCCChhHHHHH------HHHHHHhcC-CCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCe
Q psy11928 70 IKMKDLSGGQKARV------ALAELTLNA-PDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 70 ~~~~~LSgG~kqrv------~laral~~~-p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~ 140 (184)
+++..|||||+||+ ++|++++.+ |+++||||||++||+..+..+.+.+.+.. .+||+|||+.+ +...|++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 46789999999988 557888999 99999999999999999999999998753 59999999987 5678999
Q ss_pred EEEEe
Q psy11928 141 LWVIE 145 (184)
Q Consensus 141 i~~l~ 145 (184)
+++++
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 80
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.67 E-value=1.4e-17 Score=124.45 Aligned_cols=76 Identities=8% Similarity=0.097 Sum_probs=62.7
Q ss_pred hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH----------------HHHHHHHHHH---hc
Q psy11928 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE----------------SIDALADAIN---EY 120 (184)
Q Consensus 60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~----------------~~~~l~~~l~---~~ 120 (184)
..|.....+ .....|+|||||++||||++.+|++++|||||++||+. .+..+.+.+. +.
T Consensus 71 ~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~ 148 (171)
T 4gp7_A 71 QLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE 148 (171)
T ss_dssp HTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH
T ss_pred hCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc
Confidence 345544333 45667999999999999999999999999999999999 5577887754 34
Q ss_pred CcEEEEEecCHHHHHhh
Q psy11928 121 KGGVIIVSHDERLIRDT 137 (184)
Q Consensus 121 ~~tiiivsHd~~~~~~~ 137 (184)
|.|+|+||||++++..+
T Consensus 149 g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 149 GFRYVYILNSPEEVEEV 165 (171)
T ss_dssp TCSEEEEECSHHHHHHE
T ss_pred CCcEEEEeCCHHHhhhh
Confidence 78999999999999864
No 81
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.67 E-value=2.3e-16 Score=133.60 Aligned_cols=74 Identities=28% Similarity=0.359 Sum_probs=66.2
Q ss_pred cccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEE
Q psy11928 71 KMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWV 143 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~ 143 (184)
++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.+.+. +.++|++||+.... ..||+++.
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~~ 408 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALVG 408 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEEE
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEEE
Confidence 56779999999999999999 589999999999999999999999999875 35999999997765 57999988
Q ss_pred Ee
Q psy11928 144 IE 145 (184)
Q Consensus 144 l~ 145 (184)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 82
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.63 E-value=9.4e-19 Score=147.60 Aligned_cols=138 Identities=9% Similarity=-0.064 Sum_probs=100.9
Q ss_pred cccCcccCCceeEEecCCe--EEEEEecCCC-CCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928 2 YAHCDLQPQQGELKKNHRL--RIGRFDQHSG-EHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~~--~ig~v~q~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 78 (184)
.|+|+.+|++|+|..++.. +.++++|++. +.++..+++. ... ...++.++++.+++.+.. . .+. ||+|
T Consensus 88 ~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g----~~~--~~~~~~~~L~~~~L~~~~-~-~~~-lS~G 158 (413)
T 1tq4_A 88 TLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG----IGS--TNFPPDTYLEKMKFYEYD-F-FII-ISAT 158 (413)
T ss_dssp HHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCC----GGG--SSCCHHHHHHHTTGGGCS-E-EEE-EESS
T ss_pred HHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhc----ccc--hHHHHHHHHHHcCCCccC-C-eEE-eCCC
Confidence 5789999999999876421 1278888753 2344444421 111 123467888899987543 2 334 9999
Q ss_pred --HHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--------C----cEEEEEecCHHH-
Q psy11928 79 --QKARVALAELTLN----------APDVIILDEPTNNLDIESIDALADAINEY--------K----GGVIIVSHDERL- 133 (184)
Q Consensus 79 --~kqrv~laral~~----------~p~illlDEPt~~LD~~~~~~l~~~l~~~--------~----~tiiivsHd~~~- 133 (184)
|+||+.||++++. +|++++|||||+|||+.++..+++.+++. + .+|+++||++..
T Consensus 159 ~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~ 238 (413)
T 1tq4_A 159 RFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHY 238 (413)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTST
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCcc
Confidence 9999999999999 99999999999999999998888777543 1 468899999887
Q ss_pred -HHhhcCeEE-EEeCCe
Q psy11928 134 -IRDTECTLW-VIENQT 148 (184)
Q Consensus 134 -~~~~~~~i~-~l~~g~ 148 (184)
++.+|+++. .+..|.
T Consensus 239 ~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 239 DFPVLMDKLISDLPIYK 255 (413)
T ss_dssp THHHHHHHHHHHSCGGG
T ss_pred CHHHHHHHHHHhCccch
Confidence 888888874 444553
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.49 E-value=9.2e-15 Score=126.74 Aligned_cols=86 Identities=9% Similarity=0.015 Sum_probs=73.2
Q ss_pred CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH-----HHHHHHHHHH---hcCcEEEEEecCH-
Q psy11928 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE-----SIDALADAIN---EYKGGVIIVSHDE- 131 (184)
Q Consensus 61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~-----~~~~l~~~l~---~~~~tiiivsHd~- 131 (184)
+|+..... .++.+|||||+||+.+|+++..+|+++++| ||++||.. .+..+.++++ +.+.|+|++||+.
T Consensus 341 ~g~~~~~~-~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~ 418 (525)
T 1tf7_A 341 QNLLKIVC-AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQ 418 (525)
T ss_dssp TTSEEECC-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSS
T ss_pred CCCEEEEE-eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECccc
Confidence 44443333 478999999999999999999999999999 99999998 8887766664 4578999999999
Q ss_pred ---------HHHHhhcCeEEEEeCCe
Q psy11928 132 ---------RLIRDTECTLWVIENQT 148 (184)
Q Consensus 132 ---------~~~~~~~~~i~~l~~g~ 148 (184)
..+..+||++++|++|+
T Consensus 419 ~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 419 FMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred ccCcccccCcccceeeeEEEEEEEEE
Confidence 78888999999998764
No 84
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.44 E-value=2.9e-15 Score=121.63 Aligned_cols=136 Identities=12% Similarity=0.061 Sum_probs=97.3
Q ss_pred cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 62 (184)
.|+|+++|++|+|.+.+ +..++|++|++. .+.+..++.+.+... .+.. ..+++.+|
T Consensus 119 ~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~~~v~e~l~~~~~~~~d----~~lldt~g 193 (302)
T 3b9q_A 119 KLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAATVLSKAVKRGKEEGYD----VVLCDTSG 193 (302)
T ss_dssp HHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHHHHHHHHHHHHHHTTCS----EEEECCCC
T ss_pred HHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHHHHHHHHHHHHHHcCCc----chHHhcCC
Confidence 47888899999997642 124899999763 133444444444321 1111 13567788
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------CH
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEYKGGVIIVSH---------DE 131 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH---------d~ 131 (184)
+.+... +++.+|| |||++|||+++.+|+ +|+|| ||+|||+.... .++-.+.+.|+|++|| .+
T Consensus 194 l~~~~~-~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l 266 (302)
T 3b9q_A 194 RLHTNY-SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVV 266 (302)
T ss_dssp CSSCCH-HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHH
T ss_pred CCcchh-HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChhe
Confidence 876544 4789999 999999999999999 99999 99999998652 3333356889999999 56
Q ss_pred HHHHhhcCeEEEEeCCeE
Q psy11928 132 RLIRDTECTLWVIENQTI 149 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i 149 (184)
+.+...+..|.++..|+.
T Consensus 267 ~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 267 SVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHHCCCEEEEECSSS
T ss_pred ehHHHHCCCEEEEeCCCC
Confidence 677777888999998864
No 85
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.41 E-value=1.8e-15 Score=121.04 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=72.1
Q ss_pred cccCcccCCceeEEecC--------CeEEEEEecCCC--CCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccccc
Q psy11928 2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHTI 70 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~ 70 (184)
.|+|+..|++|+|.+++ +..+|+++|++. +.+++.+|+. +.....+ ...+.+.+++. .... ++
T Consensus 21 ~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~-~g~~~~~~~~~~~i~~~~~----~~~~-~~ 94 (270)
T 3sop_A 21 TLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPG-FGDQINNENCWEPIEKYIN----EQYE-KF 94 (270)
T ss_dssp HHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSBCTTCSHHHHHHHH----HHHH-HH
T ss_pred HHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechh-hhhhcccHHHHHHHHHHHH----HHHH-hh
Confidence 57899999999997643 357999999864 3445555542 1111111 11123444433 2233 34
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHH
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~ 132 (184)
.+.+||||||||+++|||++. ++++|||+++||+.... +++.+.+. .+||+|.|..+
T Consensus 95 ~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 95 LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHHTT-SEEEEEETTGG
T ss_pred hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHHhc-CcEEEEEeccc
Confidence 788999999999999999886 99999999999999854 44555554 88888888654
No 86
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.37 E-value=2.9e-14 Score=118.28 Aligned_cols=136 Identities=12% Similarity=0.061 Sum_probs=97.4
Q ss_pred cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 62 (184)
.|+|+++|++|+|.+.+ +..++|++|++. .+.+..++.+.+... .+.. ..+++.+|
T Consensus 176 ~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~~tv~e~l~~~~~~~~d----~~lldt~G 250 (359)
T 2og2_A 176 KLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAATVLSKAVKRGKEEGYD----VVLCDTSG 250 (359)
T ss_dssp HHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHHHHHHHHHHHHHHTTCS----EEEEECCC
T ss_pred HHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChhhhHHHHHHHHHhCCCH----HHHHHhcC
Confidence 46888899999997642 124899999752 033344444443321 1111 13567788
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------CH
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEYKGGVIIVSH---------DE 131 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH---------d~ 131 (184)
+.+... +++.+|| +||++|||+++.+|+ +|+|| ||+|||+.+.. .++-.+.+.|+|++|| .+
T Consensus 251 l~~~~~-~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~l 323 (359)
T 2og2_A 251 RLHTNY-SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVV 323 (359)
T ss_dssp CSSCCH-HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHH
T ss_pred CChhhh-hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHH
Confidence 876544 4789999 999999999999999 99999 99999998653 2333356889999999 46
Q ss_pred HHHHhhcCeEEEEeCCeE
Q psy11928 132 RLIRDTECTLWVIENQTI 149 (184)
Q Consensus 132 ~~~~~~~~~i~~l~~g~i 149 (184)
+.+...+..|..+..|..
T Consensus 324 si~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 324 SVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHHHCCCEEEEECSSS
T ss_pred HHHHHhCCCEEEEeCCCC
Confidence 677777888999988854
No 87
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.29 E-value=1.1e-12 Score=107.67 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928 77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQT 148 (184)
Q Consensus 77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~ 148 (184)
|||+||++|++||..+|+++++||||+. +..+ +++.+..-+.|+|++||+.+ +...|+|++++.+|.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 8999999999999999999999999982 2222 22333332347999999998 667899999888875
No 88
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.25 E-value=4e-14 Score=115.44 Aligned_cols=118 Identities=10% Similarity=-0.011 Sum_probs=78.8
Q ss_pred eEEEEEecCCCCCCCccCCHHHHHHHh--cC----CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC
Q psy11928 20 LRIGRFDQHSGEHLTAEETPAEYLQRL--FN----LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP 93 (184)
Q Consensus 20 ~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p 93 (184)
..+++++|++. +.+. ++.+..... ++ ...+.+.+.++.++ ..... .++.+|||||+||+++|++++.+|
T Consensus 121 ~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~-~~~~~lS~G~~qRv~~a~al~~~p 195 (312)
T 3aez_A 121 PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDY-ACAPVYSHLHYDIIPGAEQVVRHP 195 (312)
T ss_dssp CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSC-EEEEEEETTTTEEEEEEEEEECSC
T ss_pred CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCccc-CCcccCChhhhhhhhhHHHhccCC
Confidence 46899999864 2333 444443211 11 12356777888877 44333 468899999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHH-hhcCeEEEEeCC
Q psy11928 94 DVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIR-DTECTLWVIENQ 147 (184)
Q Consensus 94 ~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~-~~~~~i~~l~~g 147 (184)
+|+|+|||+..+|+.. ..+.+.-...|+|+|+.+... ....|.+.+.++
T Consensus 196 ~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 196 DILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp SEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred CEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 9999999999998521 123333346688889887643 344554444444
No 89
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.21 E-value=1.9e-11 Score=112.10 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=63.7
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHH--hcCCCEEEeeCCCCCCCHHHHHHH-H---HHHHh-cCcEEEEEe
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELT--LNAPDVIILDEPTNNLDIESIDAL-A---DAINE-YKGGVIIVS 128 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral--~~~p~illlDEPt~~LD~~~~~~l-~---~~l~~-~~~tiiivs 128 (184)
+++..+|+.+. ....+|+|++++..+++++ +.+|+++||||||+|+|+.....+ + +.+.+ .+.++|++|
T Consensus 707 ~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aT 782 (934)
T 3thx_A 707 CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFAT 782 (934)
T ss_dssp EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 34555666432 3466888888888888888 999999999999999999877665 3 33443 478999999
Q ss_pred cCHHHHHhhcCeEEEEeCCeEE
Q psy11928 129 HDERLIRDTECTLWVIENQTIE 150 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~g~i~ 150 (184)
|+.+.. .+|+++..+++|++.
T Consensus 783 H~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 783 HFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp SCGGGG-GGGGTCTTEEEEEEE
T ss_pred CcHHHH-HHhcccceeEeeEEE
Confidence 997766 578888777777763
No 90
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.19 E-value=1.5e-11 Score=112.53 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=57.0
Q ss_pred HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHH----hcCcEEEEEecC
Q psy11928 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAIN----EYKGGVIIVSHD 130 (184)
Q Consensus 56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~----~~~~tiiivsHd 130 (184)
+++..+|+.+... +..+.+|+||+|++.++++ +.+|+++||||||+|||+.....+. .++. +.+.|+|++||+
T Consensus 718 ~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~ 795 (918)
T 3thx_B 718 GIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY 795 (918)
T ss_dssp EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 3566677765554 3689999999999999999 8999999999999999998877665 4443 247899999999
Q ss_pred HHHHH
Q psy11928 131 ERLIR 135 (184)
Q Consensus 131 ~~~~~ 135 (184)
.+.+.
T Consensus 796 ~el~~ 800 (918)
T 3thx_B 796 PPVCE 800 (918)
T ss_dssp GGGGG
T ss_pred HHHHH
Confidence 87764
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.16 E-value=4.4e-11 Score=110.67 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=64.2
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH-HHHHHHH---Hhc-CcEEEEEecCHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI-DALADAI---NEY-KGGVIIVSHDER 132 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~-~~l~~~l---~~~-~~tiiivsHd~~ 132 (184)
+..+|+.+... +..+.+|+|+++ +++|++++.+|+++||||||+|+|+... ..++..+ .+. +.++|++||+.+
T Consensus 836 ~~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 836 FTRLGASDRIM-SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred HHHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 34456654443 256788888875 9999999999999999999999999864 3344444 333 789999999999
Q ss_pred HHHhhcCeEEEEeCCeEE
Q psy11928 133 LIRDTECTLWVIENQTIE 150 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~ 150 (184)
++..+|+++.++ +|++.
T Consensus 914 l~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 914 LVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHTSSCSSEE-EEEEE
T ss_pred HHHHhCCcceee-cCeEE
Confidence 999999987665 35553
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.16 E-value=7.8e-11 Score=94.58 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=58.1
Q ss_pred cccCCChhH-HHHHHHHHHHhcCCCEEEeeCCCC---C---CCH-HHHHHHHHHHH----hcCcEEEEEecCH--H----
Q psy11928 71 KMKDLSGGQ-KARVALAELTLNAPDVIILDEPTN---N---LDI-ESIDALADAIN----EYKGGVIIVSHDE--R---- 132 (184)
Q Consensus 71 ~~~~LSgG~-kqrv~laral~~~p~illlDEPt~---~---LD~-~~~~~l~~~l~----~~~~tiiivsHd~--~---- 132 (184)
.+.++|.++ +||+. ++++..+|+++++||||+ + +|. .....+.+.|+ +.+.|||++||+. +
T Consensus 126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~ 204 (296)
T 1cr0_A 126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKA 204 (296)
T ss_dssp CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-------
T ss_pred CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccc
Confidence 346789998 77777 999999999999999999 5 455 55566666664 4588999999995 5
Q ss_pred ----------------HHHhhcCeEEEEeCCeE
Q psy11928 133 ----------------LIRDTECTLWVIENQTI 149 (184)
Q Consensus 133 ----------------~~~~~~~~i~~l~~g~i 149 (184)
.+...||++++|++|+.
T Consensus 205 ~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 205 HEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----------CCC---CHHHHCSEEEEEEEC--
T ss_pred cccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 78889999999988754
No 93
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.11 E-value=3.9e-13 Score=102.90 Aligned_cols=76 Identities=13% Similarity=-0.023 Sum_probs=59.9
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC----CHHHHHHHHHHHHhc----CcEEEEEec
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNL----DIESIDALADAINEY----KGGVIIVSH 129 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~L----D~~~~~~l~~~l~~~----~~tiiivsH 129 (184)
++.+|+....+ +++..|| +|+.+|++++|||||+++ |+..+..+.+.+.+. +.|+|+|||
T Consensus 119 l~~~gl~~~~~-~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH 186 (207)
T 1znw_A 119 VDLAGARAIKK-TMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR 186 (207)
T ss_dssp CCHHHHHHHHH-HCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS
T ss_pred eCHHHHHHHHH-hcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC
Confidence 34445543333 4677787 899999999999999998 777888888777543 679999999
Q ss_pred CHHHHHhhcCeEEEEe
Q psy11928 130 DERLIRDTECTLWVIE 145 (184)
Q Consensus 130 d~~~~~~~~~~i~~l~ 145 (184)
|++++..+||+++++.
T Consensus 187 dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 187 RLESACAELVSLLVGT 202 (207)
T ss_dssp SHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999998774
No 94
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.07 E-value=7.9e-12 Score=106.18 Aligned_cols=127 Identities=12% Similarity=0.040 Sum_probs=86.5
Q ss_pred cccCcccCCceeEEecCC-------------------eEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNHR-------------------LRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~~-------------------~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 62 (184)
.|+|+.+|++|.|...+. +.++|++|...+ .....++.++.... .+.....+
T Consensus 176 ~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~-~~~~~~v~~~~~~~--------ae~~~~~~ 246 (438)
T 2dpy_A 176 MMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVS-PLLRMQGAAYATRI--------AEDFRDRG 246 (438)
T ss_dssp HHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSC-HHHHHHHHHHHHHH--------HHHHHTTT
T ss_pred HHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCC-HHHHHHHHHHHHHH--------HHHHHhCC
Confidence 478999999999976432 358999996321 11222222222110 01111111
Q ss_pred --CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-------Cc-----EEEEEe
Q psy11928 63 --LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-------KG-----GVIIVS 128 (184)
Q Consensus 63 --l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-------~~-----tiiivs 128 (184)
..... + .+..||+|| |||+|| +.+|++ |+|||+.....+.+++.+. |. ||+++|
T Consensus 247 ~~v~~~l-d-~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~t 314 (438)
T 2dpy_A 247 QHVLLIM-D-SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEG 314 (438)
T ss_dssp CEEEEEE-E-CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSS
T ss_pred CCHHHHH-H-hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeC
Confidence 11112 2 478899999 999999 888887 9999999999999999754 32 899999
Q ss_pred cCHHHHHhhcCeEEEEeCCeEEE
Q psy11928 129 HDERLIRDTECTLWVIENQTIEE 151 (184)
Q Consensus 129 Hd~~~~~~~~~~i~~l~~g~i~~ 151 (184)
||++ ..+||+++++.+|+++.
T Consensus 315 Hdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 315 DDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp SCSC--CHHHHHHHHHSSEEEEE
T ss_pred CCcc--chhhceEEEEeCcEEEE
Confidence 9998 56889988888888754
No 95
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.06 E-value=4.3e-12 Score=96.30 Aligned_cols=94 Identities=11% Similarity=0.154 Sum_probs=69.4
Q ss_pred cccCCChhHHHHH-HHHH---HHhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHhcCcEEE---EEecCH--HHHHhhcC
Q psy11928 71 KMKDLSGGQKARV-ALAE---LTLNAPDVIILDE--PTNNLDIESIDALADAINEYKGGVI---IVSHDE--RLIRDTEC 139 (184)
Q Consensus 71 ~~~~LSgG~kqrv-~lar---al~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~tii---ivsHd~--~~~~~~~~ 139 (184)
+...+|+|||+++ ++.+ |++.+|+++|+|| |++.+|+...+.+.+++.....+|+ .|||+. .+++++++
T Consensus 80 ~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~ 159 (189)
T 2i3b_A 80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRN 159 (189)
T ss_dssp SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHT
T ss_pred EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHee
Confidence 4567999999888 4444 5899999999999 9999999999999999987644443 456987 56665554
Q ss_pred eEEEEeCCeEEEec-CChhHHHHHHHHHhh
Q psy11928 140 TLWVIENQTIEEID-GDFDDYRKELLEALG 168 (184)
Q Consensus 140 ~i~~l~~g~i~~~~-~~~~~~~~~~~~~~~ 168 (184)
+.+|++.... .+.+...+++.+.+.
T Consensus 160 ----~~~~~i~~~~~~nr~~~~~~i~~~~~ 185 (189)
T 2i3b_A 160 ----RKDVKVFNVTKENRNHLLPDIVTCVQ 185 (189)
T ss_dssp ----TCCSEEEECCSSSGGGHHHHHHHHHT
T ss_pred ----cCCcEEEEeChHhHHHHHHHHHHHHH
Confidence 4677776543 466677777666553
No 96
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.03 E-value=4.4e-10 Score=86.12 Aligned_cols=74 Identities=4% Similarity=-0.006 Sum_probs=59.6
Q ss_pred CCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCC--CHHHHHHHHHHHH----hcCcEEEEEecCH--------HHHHhh
Q psy11928 74 DLSGGQKARVALAELTLNAPD--VIILDEPTNNL--DIESIDALADAIN----EYKGGVIIVSHDE--------RLIRDT 137 (184)
Q Consensus 74 ~LSgG~kqrv~laral~~~p~--illlDEPt~~L--D~~~~~~l~~~l~----~~~~tiiivsHd~--------~~~~~~ 137 (184)
..|.++.++...+.+...+|+ ++++||||+.+ |+.....+.+.|+ +.+.|||++||+. ..+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 458999888888888888999 99999999888 9887777777664 3478999999999 558889
Q ss_pred cCeEEEEeCC
Q psy11928 138 ECTLWVIENQ 147 (184)
Q Consensus 138 ~~~i~~l~~g 147 (184)
||++++++..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999998753
No 97
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.99 E-value=3.7e-10 Score=101.70 Aligned_cols=64 Identities=23% Similarity=0.221 Sum_probs=56.5
Q ss_pred ccCCChhHHHHHHHHHHH--hcCCCEEEeeCC---CCCCCHHHH-HHHHHHHHhcCcEEEEEecCHHHHH
Q psy11928 72 MKDLSGGQKARVALAELT--LNAPDVIILDEP---TNNLDIESI-DALADAINEYKGGVIIVSHDERLIR 135 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral--~~~p~illlDEP---t~~LD~~~~-~~l~~~l~~~~~tiiivsHd~~~~~ 135 (184)
...+|+|+++++.+++++ +.+|+++||||| |++||+.+. ..+.+.+.+.+.|+|++||+.++..
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 356899999999999999 999999999999 999999886 5688888877889999999998864
No 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.96 E-value=7.8e-10 Score=88.12 Aligned_cols=83 Identities=6% Similarity=0.018 Sum_probs=59.0
Q ss_pred CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCC--CCCHHHH---HHHHHHH----Hh
Q psy11928 49 LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN--NLDIESI---DALADAI----NE 119 (184)
Q Consensus 49 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~--~LD~~~~---~~l~~~l----~~ 119 (184)
.......++++.+++..... +++..||+|+.|++ ++++.+|+++++||||+ ++|.... ..+++.| ++
T Consensus 94 ~~~~~~~~~~~~l~l~~~~~-~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQPLIG-SLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp SCHHHHHHHHHHEEECCCTT-SCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred cChhhhhhccCceEEeecCC-CCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 34445566777777765544 47899999997765 68888999999999999 9997433 5555544 34
Q ss_pred cCcEEEEEecCHHHHH
Q psy11928 120 YKGGVIIVSHDERLIR 135 (184)
Q Consensus 120 ~~~tiiivsHd~~~~~ 135 (184)
.+.|||++||+.....
T Consensus 170 ~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 170 TGCSIVFLHHASKGAA 185 (279)
T ss_dssp HCCEEEEEEEC-----
T ss_pred cCCEEEEEecCCCccc
Confidence 5889999999987763
No 99
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.93 E-value=6.5e-10 Score=86.31 Aligned_cols=70 Identities=9% Similarity=-0.029 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC-----HHHHHHHHHHH---HhcCcEEEEEecCHHHH---------Hhhc
Q psy11928 76 SGGQKARVALAELTLNAPDVIILDEPTNNLD-----IESIDALADAI---NEYKGGVIIVSHDERLI---------RDTE 138 (184)
Q Consensus 76 SgG~kqrv~laral~~~p~illlDEPt~~LD-----~~~~~~l~~~l---~~~~~tiiivsHd~~~~---------~~~~ 138 (184)
+.++..+......-..+|+++++||||++|| +..+..+.+++ ++.+.|||+|||+...+ ..+|
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEe
Confidence 3444444444444568999999999999997 55555566655 45588999999999998 6788
Q ss_pred -CeEEEEe
Q psy11928 139 -CTLWVIE 145 (184)
Q Consensus 139 -~~i~~l~ 145 (184)
|++++|+
T Consensus 199 aD~vi~l~ 206 (251)
T 2ehv_A 199 ARGVIVLD 206 (251)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEe
Confidence 9999995
No 100
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.90 E-value=1.1e-11 Score=100.59 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=61.5
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHH
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~ 132 (184)
.+.+.++.+ +....+ ...|||||||| |||++.+|+||| |++||+.+...+.. +||++.
T Consensus 183 ~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~ 240 (305)
T 2v9p_A 183 ACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQ 240 (305)
T ss_dssp HHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEE
T ss_pred HHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHH
Confidence 344555553 433222 68999999999 999999999999 99999998887752 289988
Q ss_pred HHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928 133 LIRDTECTLWVIENQTIEEIDGDFDDY 159 (184)
Q Consensus 133 ~~~~~~~~i~~l~~g~i~~~~~~~~~~ 159 (184)
.+ ..||++ +|++|++++ .++.+++
T Consensus 241 ~~-~~aD~i-vl~~G~iv~-~g~~~el 264 (305)
T 2v9p_A 241 TF-RFEQPC-TDESGEQPF-NITDADW 264 (305)
T ss_dssp EE-ECCCCC-CCC---CCC-CCCHHHH
T ss_pred HH-HhCCEE-EEeCCEEEE-eCCHHHH
Confidence 76 579999 999999974 6777666
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.88 E-value=8.8e-09 Score=78.39 Aligned_cols=77 Identities=9% Similarity=0.039 Sum_probs=57.3
Q ss_pred cccCCChhH--HHHHHHHHHHhcC-CCEEEeeCCCCCCCHHH--------HHHH----HHHHHhcCcEEEEEecCHH---
Q psy11928 71 KMKDLSGGQ--KARVALAELTLNA-PDVIILDEPTNNLDIES--------IDAL----ADAINEYKGGVIIVSHDER--- 132 (184)
Q Consensus 71 ~~~~LSgG~--kqrv~laral~~~-p~illlDEPt~~LD~~~--------~~~l----~~~l~~~~~tiiivsHd~~--- 132 (184)
.+..+|+++ ++++..+++++.+ |+++++||||+.+|+.. ...+ .++.++.+.|||+++|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~ 160 (220)
T 2cvh_A 81 ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSR 160 (220)
T ss_dssp EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCT
T ss_pred EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCC
Confidence 345667765 4578888899876 99999999999999732 1223 2333455889999999865
Q ss_pred ----------HHHhhcCeEEEEeCC
Q psy11928 133 ----------LIRDTECTLWVIENQ 147 (184)
Q Consensus 133 ----------~~~~~~~~i~~l~~g 147 (184)
.+...||.+++++..
T Consensus 161 ~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 161 TEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCccccCCCcceeecCcEEEEEEEe
Confidence 577899999998754
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.79 E-value=9e-10 Score=95.39 Aligned_cols=56 Identities=7% Similarity=0.037 Sum_probs=47.3
Q ss_pred cCCCEEEeeCCCC-----CCCHHHHHHHHHHHHh---cCcEEEEEecCHHHH---------HhhcCeEEEEeC
Q psy11928 91 NAPDVIILDEPTN-----NLDIESIDALADAINE---YKGGVIIVSHDERLI---------RDTECTLWVIEN 146 (184)
Q Consensus 91 ~~p~illlDEPt~-----~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~---------~~~~~~i~~l~~ 146 (184)
.+|+++++||||+ +||+..+..+.++++. .+.|||++||+++++ ..+||++++|++
T Consensus 137 g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 3588999999998 4689999888888754 478999999999884 566999999988
No 103
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.78 E-value=5.3e-09 Score=80.12 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=47.8
Q ss_pred CCChhHHH-HHHHHHHHhc-------CCCEEEeeCCCCCCCHH-------H-----HHHHHHHH----HhcCcEEEEEec
Q psy11928 74 DLSGGQKA-RVALAELTLN-------APDVIILDEPTNNLDIE-------S-----IDALADAI----NEYKGGVIIVSH 129 (184)
Q Consensus 74 ~LSgG~kq-rv~laral~~-------~p~illlDEPt~~LD~~-------~-----~~~l~~~l----~~~~~tiiivsH 129 (184)
.++.++++ .+..++.++. +|+++++||||+++|+. . ...+.+.+ ++.+.|||+|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH 178 (231)
T 4a74_A 99 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 178 (231)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence 44555443 3555665555 99999999999999983 1 11333333 455889999999
Q ss_pred ----CHHHHHhhcCeEEEEeCC
Q psy11928 130 ----DERLIRDTECTLWVIENQ 147 (184)
Q Consensus 130 ----d~~~~~~~~~~i~~l~~g 147 (184)
+-..+...||+++++++|
T Consensus 179 ~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 179 VQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp CC---------CCSEEEEEEEC
T ss_pred cccCcchhhHhhceEEEEEEec
Confidence 555588999999999875
No 104
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.73 E-value=2.9e-11 Score=93.39 Aligned_cols=87 Identities=9% Similarity=0.072 Sum_probs=64.4
Q ss_pred HHHHHHHHhhCCCCcccccccccCCChhHHHHHHH-----HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-----
Q psy11928 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVAL-----AELTLNAPDVIILDEPTNNLDIESIDALADAINEY----- 120 (184)
Q Consensus 51 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l-----aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----- 120 (184)
...+.++++..... . ...+|||||+||++| +++++.+|++++|||||+++|..+...+.+.+.+.
T Consensus 104 ~~~i~~~l~~~~~~--i---l~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~ 178 (218)
T 1z6g_A 104 KSEYDKAKEQNKIC--L---FEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH 178 (218)
T ss_dssp HHHHHHHHHTTCEE--E---EEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcE--E---EEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 44566667654321 1 126799999999999 89999999999999999999998877777666432
Q ss_pred -----CcEEEEEecCHHHHHhhcCeEE
Q psy11928 121 -----KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 121 -----~~tiiivsHd~~~~~~~~~~i~ 142 (184)
..+.|+++||++++...+++++
T Consensus 179 ~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 179 EANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred hhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 3467778888777766655543
No 105
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.72 E-value=4.9e-09 Score=83.19 Aligned_cols=56 Identities=27% Similarity=0.234 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEE
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~ 142 (184)
|++|+++|..+|+++++|||| |+.+...+.+.. +.+.+|+++||+.+ +...|++++
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~ 143 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIV 143 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHh
Confidence 899999999999999999999 999877766654 45889999999977 445566543
No 106
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.63 E-value=1.5e-09 Score=88.07 Aligned_cols=119 Identities=16% Similarity=0.106 Sum_probs=70.8
Q ss_pred cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 62 (184)
.|+|+++|++|+|.+.+ +..+++++|++. +.+..++.+.+... .+.. ..+++..|
T Consensus 121 ~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~~~~~~~~d----~~llDt~G 194 (304)
T 1rj9_A 121 KLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQAMKARGYD----LLFVDTAG 194 (304)
T ss_dssp HHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHHHHHHHTCS----EEEECCCC
T ss_pred HHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHHHHHhCCCC----EEEecCCC
Confidence 46788999999997642 134889999763 33333333333211 0100 01344455
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL 133 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~ 133 (184)
..+... ..+.+| .+||++||||++.+|+ ++.|| |+++.+. ...+.++-...+.|+|++||+.+.
T Consensus 195 ~~~~~~-~~~~eL---s~~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 195 RLHTKH-NLMEEL---KKVKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp CCTTCH-HHHHHH---HHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CCCchH-HHHHHH---HHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcCCcEEEEECCccc
Confidence 543222 234444 4899999999999999 66667 5555432 233333334558899999998543
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.62 E-value=1.6e-08 Score=91.50 Aligned_cols=76 Identities=11% Similarity=0.000 Sum_probs=51.2
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH----HHHHHHh-cCcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA----LADAINE-YKGGVIIVSHDERLIRDTECTLWVIE 145 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~----l~~~l~~-~~~tiiivsHd~~~~~~~~~~i~~l~ 145 (184)
..+.+|+||++. ..+...+.+|+++|||||++|+|+..... +.+.+.+ .+.++|++||+.+... +|+++..+.
T Consensus 666 ~~stf~~e~~~~-~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~ 743 (800)
T 1wb9_A 666 GRSTFMVEMTET-ANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVA 743 (800)
T ss_dssp ----CHHHHHHH-HHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEE
T ss_pred hhhhhhHHHHHH-HHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceE
Confidence 456778887754 44455689999999999988888765443 3444444 4789999999998764 777654444
Q ss_pred CCe
Q psy11928 146 NQT 148 (184)
Q Consensus 146 ~g~ 148 (184)
+|+
T Consensus 744 n~~ 746 (800)
T 1wb9_A 744 NVH 746 (800)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 108
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.62 E-value=1.7e-09 Score=89.23 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=60.5
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-----Cc-----EEEEEecCHHHHHhhcCe
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-----KG-----GVIIVSHDERLIRDTECT 140 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----~~-----tiiivsHd~~~~~~~~~~ 140 (184)
.+..||+|| ||+++| +.+|++ |+|||+.....+.+++.+. |. ||+++|||++ ..+||+
T Consensus 168 ~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~ 235 (347)
T 2obl_A 168 SVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDE 235 (347)
T ss_dssp THHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHH
T ss_pred hHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhhh
Confidence 688999999 899999 678877 9999999999999999764 34 8999999998 678999
Q ss_pred EEEEeCCeEEE
Q psy11928 141 LWVIENQTIEE 151 (184)
Q Consensus 141 i~~l~~g~i~~ 151 (184)
++++.+|+++.
T Consensus 236 v~~i~dG~Ivl 246 (347)
T 2obl_A 236 VRSILDGHIVL 246 (347)
T ss_dssp HHHHCSEEEEB
T ss_pred eEEeeCcEEEE
Confidence 99999999854
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.61 E-value=5.5e-11 Score=90.69 Aligned_cols=110 Identities=6% Similarity=-0.012 Sum_probs=79.9
Q ss_pred EEEEecCCCCCCCccCCHHHHHHHhc----CCCHHHHHHHHhhCCCCcccccccccCCChhHH----HHHHHHHHHhcCC
Q psy11928 22 IGRFDQHSGEHLTAEETPAEYLQRLF----NLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK----ARVALAELTLNAP 93 (184)
Q Consensus 22 ig~v~q~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k----qrv~laral~~~p 93 (184)
+++++|++...-....++.+.....+ ....+++.+.++.+++.+... .++.++|+|++ ||++++++++.+|
T Consensus 34 i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~ 112 (211)
T 3asz_A 34 VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEG 112 (211)
T ss_dssp EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEE-ECCEETTTTEECSSCEEECCCSEEEEES
T ss_pred eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcC-CCcccCcccCCCCCeEEeCCCcEEEEee
Confidence 89999987411112334444432211 123456777788888776665 47899999974 6889999999999
Q ss_pred CEEEeeCCCCC-------CCHHHHHHHHHHHHh----cCcEEEEEecCHH
Q psy11928 94 DVIILDEPTNN-------LDIESIDALADAINE----YKGGVIIVSHDER 132 (184)
Q Consensus 94 ~illlDEPt~~-------LD~~~~~~l~~~l~~----~~~tiiivsHd~~ 132 (184)
+++++||||++ ||+.....+.+.+.+ .+.|++.++|+..
T Consensus 113 ~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 113 ILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp TTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred hhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999 899888877777754 3789999999853
No 110
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.59 E-value=1.4e-09 Score=95.83 Aligned_cols=107 Identities=14% Similarity=0.248 Sum_probs=58.6
Q ss_pred cccCcccC-CceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhh--CCCC
Q psy11928 2 YAHCDLQP-QQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGT--FGLA 64 (184)
Q Consensus 2 ~~~G~~~p-~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~ 64 (184)
.|+|+..| ++|+|...+ +..+||+||++. +....++.+.+.. ....+.. -++.
T Consensus 64 ~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i~~--------~~~~~~~~~~~~s 133 (608)
T 3szr_A 64 ALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEINK--------AQNAIAGEGMGIS 133 (608)
T ss_dssp HHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CC--CCCHHHHHTTHHH--------HHHHHHCSSSCCC
T ss_pred HHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeeccccc--CCCHHHHHHHHHH--------HHHHhcCCccccc
Confidence 47899988 799986432 346899998763 3333333222211 1111111 1121
Q ss_pred cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCC------CCCCCHHHHHHHHHHHHhc-----CcEEEEEecCHHH
Q psy11928 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEP------TNNLDIESIDALADAINEY-----KGGVIIVSHDERL 133 (184)
Q Consensus 65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEP------t~~LD~~~~~~l~~~l~~~-----~~tiiivsHd~~~ 133 (184)
. +++.++.+....|+++|+||| |+|||+..+..+.+++.++ +.+++++|||.+.
T Consensus 134 ~---------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 134 H---------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp S---------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred h---------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 1 112222333458999999999 9999999999999988774 4589999999763
No 111
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.56 E-value=2.8e-08 Score=77.62 Aligned_cols=108 Identities=10% Similarity=0.118 Sum_probs=67.6
Q ss_pred eEEEEEecCCCCCCCccCCHHHHHHHh---cC------CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHh
Q psy11928 20 LRIGRFDQHSGEHLTAEETPAEYLQRL---FN------LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTL 90 (184)
Q Consensus 20 ~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~ 90 (184)
+.+++++|+.. ....+..+..... .. ...+.+.+.++.+ ..... .++..||+||+||+.+ ++++
T Consensus 59 ~~i~~v~~d~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~-~~~~~ls~g~~~r~~~-~~~~ 131 (245)
T 2jeo_A 59 RKVVILSQDRF---YKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKT-VEVPTYDFVTHSRLPE-TTVV 131 (245)
T ss_dssp CSEEEEEGGGG---BCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCC-EEECCEETTTTEECSS-CEEE
T ss_pred CceEEEeCCcC---ccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCC-eecccccccccCccCc-eEEe
Confidence 46889999852 2233444433211 11 1123344555443 22233 4789999999999988 6888
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHH-HhhcCeE
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI-RDTECTL 141 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~-~~~~~~i 141 (184)
.+|+++|+|||....+.. +.+ ..+.+|+++||+...+ ..+++.+
T Consensus 132 ~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 132 YPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp CCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence 999999999998887764 211 1377999999974444 4444434
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.51 E-value=3.2e-08 Score=81.85 Aligned_cols=56 Identities=25% Similarity=0.204 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 84 ALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 84 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
+|++||.++|+++++|||| |.++...+.+.. +.|.+|++++|+.+.+ ..++|++.|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l 243 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDV 243 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHT
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhh
Confidence 8999999999999999999 777776666654 4488999999999987 567877665
No 113
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.43 E-value=6.2e-09 Score=84.16 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=46.5
Q ss_pred ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC-CCHHHHHHHHHHHHh-cCcEEEEEecCHH
Q psy11928 70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNN-LDIESIDALADAINE-YKGGVIIVSHDER 132 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~-LD~~~~~~l~~~l~~-~~~tiiivsHd~~ 132 (184)
+++.++|||||||+.+||+++ ++++||||++ ||+...+ +++.+.. .+.++|+++||+.
T Consensus 109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVA-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHH-HHHHHHhcCCEEEEEEeCCCC
Confidence 478999999999999999886 9999999985 9998853 3333433 3678999999973
No 114
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.41 E-value=2e-07 Score=76.85 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHHHh-------cCCCEEEeeCCCCCCCHHH------------HHHHHHHH----HhcCcEEEEEecCHH
Q psy11928 76 SGGQKARVALAELTL-------NAPDVIILDEPTNNLDIES------------IDALADAI----NEYKGGVIIVSHDER 132 (184)
Q Consensus 76 SgG~kqrv~laral~-------~~p~illlDEPt~~LD~~~------------~~~l~~~l----~~~~~tiiivsHd~~ 132 (184)
|.+++|++.++++++ .+|+++++||||+++|+.. ...+...| ++.+.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 678999999999998 6899999999999999852 23343333 345789999999877
Q ss_pred HHH
Q psy11928 133 LIR 135 (184)
Q Consensus 133 ~~~ 135 (184)
...
T Consensus 288 ~~~ 290 (349)
T 1pzn_A 288 RPD 290 (349)
T ss_dssp ---
T ss_pred ccc
Confidence 554
No 115
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.40 E-value=1.8e-07 Score=70.44 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=55.5
Q ss_pred HHHHHHhhCCCCccc-ccccccCCChhHHHH-HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc
Q psy11928 53 KARKQLGTFGLAGHA-HTIKMKDLSGGQKAR-VALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY 120 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~-~~~~~~~LSgG~kqr-v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 120 (184)
++.+.+...++.... .+ ++..+|+||+|| +..+++++.+|+.+++|||||++|..+...+.+.|.+.
T Consensus 128 ~~~~~~~~~~~~~~~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHTTCCEEEEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 345566677776432 34 689999999999 89999999999999999999999999999999888653
No 116
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.10 E-value=1.4e-05 Score=61.35 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=43.2
Q ss_pred cCCChhHHHH-HHHHHHHh--cCCCEEEeeCCCCCCCHH-------H-----HHHHHHHH----HhcCcEEEEEecCHHH
Q psy11928 73 KDLSGGQKAR-VALAELTL--NAPDVIILDEPTNNLDIE-------S-----IDALADAI----NEYKGGVIIVSHDERL 133 (184)
Q Consensus 73 ~~LSgG~kqr-v~laral~--~~p~illlDEPt~~LD~~-------~-----~~~l~~~l----~~~~~tiiivsHd~~~ 133 (184)
..++..+... +.-+..++ .+|+++++|||++.+|+. . ...+...+ ++.+.|||+++|....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~ 176 (243)
T 1n0w_A 97 RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 176 (243)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec
Confidence 3456555433 22233333 589999999999999975 2 22333333 3458899999997665
Q ss_pred HHh-------------------hcCeEEEEeCC
Q psy11928 134 IRD-------------------TECTLWVIENQ 147 (184)
Q Consensus 134 ~~~-------------------~~~~i~~l~~g 147 (184)
... .||.+++++.+
T Consensus 177 ~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 177 VDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp --------------------CCTTCEEEEEEEC
T ss_pred CCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 433 78999988764
No 117
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.80 E-value=4.4e-05 Score=56.24 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=36.5
Q ss_pred HhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928 89 TLNAPDVIILDEPTN-NLDIESIDALADAINE---YKGGVIIVSHDE 131 (184)
Q Consensus 89 l~~~p~illlDEPt~-~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 131 (184)
.+.+|++|++|||++ ++|+..+..+.+++.+ .+.++|++||..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 356999999999985 9999999988888864 368999999975
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.74 E-value=2.2e-05 Score=65.05 Aligned_cols=54 Identities=28% Similarity=0.241 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCe
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~ 140 (184)
+.+|+++|..+|+++++|||+ |+.....+.+.. ..+.+|+.++|+.+ +...++|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~r 252 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHR 252 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHH
Confidence 579999999999999999999 777765555543 34789999999855 4444444
No 119
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=2.8e-05 Score=63.12 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=37.0
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928 89 TLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL 133 (184)
Q Consensus 89 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~ 133 (184)
+..+|+++|+|||++ ||+.+...+.+.+.+. +.++|++||+...
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 778999999999999 9999999999999875 4689999999654
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.61 E-value=7.9e-06 Score=68.85 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=41.7
Q ss_pred CCChhHHHHHHHHHHHhcCCC---EEEeeCCC-CCCCHHHHHHHHHHHHhcCcEEEEEecCHH
Q psy11928 74 DLSGGQKARVALAELTLNAPD---VIILDEPT-NNLDIESIDALADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 74 ~LSgG~kqrv~laral~~~p~---illlDEPt-~~LD~~~~~~l~~~l~~~~~tiiivsHd~~ 132 (184)
.++.+++||++|+|+++.+|+ ++++|||| ++||+.....+ +.+.. +.+||+|.|-.+
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l-k~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM-KRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH-HHHTT-TSEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH-HHHhc-cCcEEEEEEccc
Confidence 356778899999999999999 99999999 69999875444 44444 667777777543
No 121
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.56 E-value=1.9e-07 Score=69.66 Aligned_cols=80 Identities=11% Similarity=-0.004 Sum_probs=58.0
Q ss_pred ccCC--ChhHHHHHHHHH------HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecC-HHHHHhhcC
Q psy11928 72 MKDL--SGGQKARVALAE------LTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHD-ERLIRDTEC 139 (184)
Q Consensus 72 ~~~L--SgG~kqrv~lar------al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd-~~~~~~~~~ 139 (184)
...+ |+|++|++.++. ++..+|+...+|+ ++|+..+.. ++.+... +.++|.+||. ++.++.+|+
T Consensus 90 ~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~ 165 (189)
T 2bdt_A 90 LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVK 165 (189)
T ss_dssp HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHH
T ss_pred HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHH
Confidence 3445 899999988888 8899998888884 899988777 6666544 4689999999 999999999
Q ss_pred eEEEEeCCeEEEecCChhH
Q psy11928 140 TLWVIENQTIEEIDGDFDD 158 (184)
Q Consensus 140 ~i~~l~~g~i~~~~~~~~~ 158 (184)
+|+ ++|+++. .++.+.
T Consensus 166 ~i~--~~g~~~~-~~~~~~ 181 (189)
T 2bdt_A 166 NLK--TNPRFIF-CMAGDP 181 (189)
T ss_dssp HHH--HCGGGSC-C-----
T ss_pred HHh--hCCcEEE-eecCCc
Confidence 987 8998863 555444
No 122
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.56 E-value=0.00029 Score=59.00 Aligned_cols=57 Identities=9% Similarity=0.138 Sum_probs=40.0
Q ss_pred cCCCEEEeeCCCCCCCHHHH------------HHHHHHH----HhcCcEEEEEecCH-------------------HHHH
Q psy11928 91 NAPDVIILDEPTNNLDIESI------------DALADAI----NEYKGGVIIVSHDE-------------------RLIR 135 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~------------~~l~~~l----~~~~~tiiivsHd~-------------------~~~~ 135 (184)
.+|+++++|||++.+|.... ..+++.| ++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996422 3333433 45689999999982 2346
Q ss_pred hhcCeEEEEeCC
Q psy11928 136 DTECTLWVIENQ 147 (184)
Q Consensus 136 ~~~~~i~~l~~g 147 (184)
..+|.++.++.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 778888888765
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.41 E-value=0.00015 Score=52.21 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=32.5
Q ss_pred HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcE-EEEEecC
Q psy11928 88 LTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGG-VIIVSHD 130 (184)
Q Consensus 88 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~t-iiivsHd 130 (184)
+++.+|++|++|||++ ++....+.+.+++++ .+.+ +|++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4577899999999998 666557778787764 3677 8888884
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.38 E-value=7.3e-06 Score=63.69 Aligned_cols=45 Identities=29% Similarity=0.365 Sum_probs=38.7
Q ss_pred cccccCCChhHHHHHHHHHHH-hcCCCEEEee----CCCCCCCHHHHHHHHHHHHhc
Q psy11928 69 TIKMKDLSGGQKARVALAELT-LNAPDVIILD----EPTNNLDIESIDALADAINEY 120 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral-~~~p~illlD----EPt~~LD~~~~~~l~~~l~~~ 120 (184)
++++.+||| |+ +++ +.+|+++++| |||++||+.+...+.+.+.++
T Consensus 147 ~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 147 RRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp TEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred cCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 357889999 55 777 9999999999 999999999998888888664
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.38 E-value=1.9e-05 Score=65.07 Aligned_cols=73 Identities=16% Similarity=0.041 Sum_probs=51.0
Q ss_pred cccCCChhHHHHHHHHHHHh-cCCCEEEeeC---CC------CCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHh
Q psy11928 71 KMKDLSGGQKARVALAELTL-NAPDVIILDE---PT------NNLDIESIDALADAIN----EYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~-~~p~illlDE---Pt------~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~ 136 (184)
.+..+|+|++|+..++++.. .+|++++||| |+ .++|+..+..+.+.+. +.+.+|++++|. ...++
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r 333 (365)
T 1lw7_A 255 QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDR 333 (365)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHH
Confidence 45667788888888888774 6999999999 65 5899999988888874 337899999975 34445
Q ss_pred hcCeEEEE
Q psy11928 137 TECTLWVI 144 (184)
Q Consensus 137 ~~~~i~~l 144 (184)
+++++.++
T Consensus 334 ~~~~i~~i 341 (365)
T 1lw7_A 334 YNQVKAVI 341 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56555433
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.33 E-value=1.5e-05 Score=64.62 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=46.2
Q ss_pred HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHH
Q psy11928 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIR 135 (184)
Q Consensus 58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~ 135 (184)
+..+++..... ...++|+||+||+..+++++.+|+++ ||| ..+.+.+++. +.+|+++||+...+.
T Consensus 127 l~~vd~~~~~~--~~~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 127 IALVDAVHADE--QMNQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLG 193 (318)
T ss_dssp EEEEETTTHHH--HHHHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGG
T ss_pred EEEEEHHHHHH--HHhhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHH
Confidence 34455544333 23489999999999999999999987 999 4455555443 579999999654443
No 127
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.28 E-value=4.4e-06 Score=67.09 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=31.9
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE 108 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~ 108 (184)
+-.++||||+||+.+|++...+|+|+|+||||+++|+.
T Consensus 131 y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 131 YDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp EETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred CccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 45789999999999874333399999999999999985
No 128
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.22 E-value=0.00071 Score=57.93 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=55.2
Q ss_pred cccCCChhHHHHHHHHH--HHhc---------------CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH
Q psy11928 71 KMKDLSGGQKARVALAE--LTLN---------------APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL 133 (184)
Q Consensus 71 ~~~~LSgG~kqrv~lar--al~~---------------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~ 133 (184)
..+.+||||+|-..+|. +++. .-.++++||. +-+|.......+++++++|.=+|++|=+ .
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~ 452 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--N 452 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--S
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--h
Confidence 47899999999754444 3322 2357999999 9999999999999999999988898877 4
Q ss_pred HHhhcCeEEEE
Q psy11928 134 IRDTECTLWVI 144 (184)
Q Consensus 134 ~~~~~~~i~~l 144 (184)
+...++.++.+
T Consensus 453 i~p~v~~~~~~ 463 (483)
T 3euj_A 453 ISPERGTTYKL 463 (483)
T ss_dssp CCCSSSEEEEC
T ss_pred hhhccCceEEE
Confidence 44556666544
No 129
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.07 E-value=0.0019 Score=54.65 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=53.5
Q ss_pred cccCCChhHHHHHHHHHHHh--cCCCEEEeeCCCCCCCH--------HHHHHHHHHH----HhcCcEEEEEec-------
Q psy11928 71 KMKDLSGGQKARVALAELTL--NAPDVIILDEPTNNLDI--------ESIDALADAI----NEYKGGVIIVSH------- 129 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~--~~p~illlDEPt~~LD~--------~~~~~l~~~l----~~~~~tiiivsH------- 129 (184)
....+|.++.+ ..++.+. .+|+++++|+++...+. .....+.+.| ++++.+||+++|
T Consensus 292 d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~ 369 (454)
T 2r6a_A 292 DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQ 369 (454)
T ss_dssp CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTT
T ss_pred CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence 35678998876 4556665 68999999999987743 2223444444 356889999999
Q ss_pred --C--HH--------HHHhhcCeEEEEeCCe
Q psy11928 130 --D--ER--------LIRDTECTLWVIENQT 148 (184)
Q Consensus 130 --d--~~--------~~~~~~~~i~~l~~g~ 148 (184)
| +. .+++.||.|+.+..+.
T Consensus 370 ~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 370 RQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp C---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred CCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 3 22 4677899999987654
No 130
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.99 E-value=0.00016 Score=59.60 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=51.4
Q ss_pred cccCccc-CCceeEEec--------CCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHH----HHHHHhhCCCCcccc
Q psy11928 2 YAHCDLQ-PQQGELKKN--------HRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEK----ARKQLGTFGLAGHAH 68 (184)
Q Consensus 2 ~~~G~~~-p~~G~i~~~--------~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~l~~~~~ 68 (184)
.|+|... |++|+|... ....+++++|+.. +....++.++ ..++.+.+. +.++++.+|+..+.+
T Consensus 234 ~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~--~l~~l~~~e~~~~~~e~l~~~gl~~f~~ 309 (358)
T 2rcn_A 234 ALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREF--GLWHLEPEQITQGFVEFHDYLGHCKYRD 309 (358)
T ss_dssp HHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTC--CCCCCCHHHHHHTSGGGGGGTTCSSSTT
T ss_pred HHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHh--hhcCCCHHHHHHHHHHHHHHcCCchhcC
Confidence 4788888 999999754 2346899998753 2111222221 112233322 456788889987665
Q ss_pred cccccCCChhHHHHHHHHHHHh
Q psy11928 69 TIKMKDLSGGQKARVALAELTL 90 (184)
Q Consensus 69 ~~~~~~LSgG~kqrv~laral~ 90 (184)
.++.+|| ||+||++||++++
T Consensus 310 -~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 310 -CKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp -CCSSSCT-TCHHHHHHHHTSS
T ss_pred -CCcccCC-HHHHHHHHHhcCC
Confidence 4789999 9999999998753
No 131
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.96 E-value=0.00024 Score=59.79 Aligned_cols=64 Identities=30% Similarity=0.280 Sum_probs=46.7
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH---HHHHHHhcCcEEEEEe
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA---LADAINEYKGGVIIVS 128 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~---l~~~l~~~~~tiiivs 128 (184)
++..++++ . .++.+||+|++|++.++++|+..|.++++ |.+|+..... +.+.+.+.+.+++++|
T Consensus 239 lL~vvDls---~-~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 239 LLYVLDAA---D-EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp EEEEEETT---S-CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred hhEEeCCc---c-CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEE
Confidence 44555554 2 36789999999999999999999999999 9999875532 2333334455666655
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.0027 Score=48.36 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=40.3
Q ss_pred cCCCEEEeeCCCCCC--CHHHHH----HHHHHHHhcCcEEEEEecCHHH--------HHhhcCeEEEEeC
Q psy11928 91 NAPDVIILDEPTNNL--DIESID----ALADAINEYKGGVIIVSHDERL--------IRDTECTLWVIEN 146 (184)
Q Consensus 91 ~~p~illlDEPt~~L--D~~~~~----~l~~~l~~~~~tiiivsHd~~~--------~~~~~~~i~~l~~ 146 (184)
.+|+++++|+|++.+ |+.... .+.+.+++.+.|||+++|.... +++.||.++.++.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 689999999999988 553332 3334445668899999998765 4678899988853
No 133
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.92 E-value=0.0014 Score=50.16 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=38.9
Q ss_pred HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928 86 AELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 86 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 136 (184)
+..++..++++||| ||+.+...+.+.+. .+.||+++||+++++..
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH
Confidence 44556678999999 99999999999887 37899999999999875
No 134
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.74 E-value=0.00058 Score=61.66 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=55.3
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHhc---CcEEEEE-ecCHHHHHhhcCe
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTN-NLDIESIDALADAINEY---KGGVIIV-SHDERLIRDTECT 140 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~---~~tiiiv-sHd~~~~~~~~~~ 140 (184)
++.-+|.|+.+|..+++.++.+++++++|||.. +||......+.+.+... ..+|+++ ||+.+.+..+.+.
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 466789999999999999999999999999996 99987766665555433 2477774 9998877766653
No 135
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.66 E-value=0.0059 Score=49.99 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcC--CCEEEeeCCCCCC----------CH----HH---HHHHHH---HHHhcCcEEEEEecCHH------
Q psy11928 81 ARVALAELTLNA--PDVIILDEPTNNL----------DI----ES---IDALAD---AINEYKGGVIIVSHDER------ 132 (184)
Q Consensus 81 qrv~laral~~~--p~illlDEPt~~L----------D~----~~---~~~l~~---~l~~~~~tiiivsHd~~------ 132 (184)
+-+.++++++.. |+++++|||++.+ |+ .. .+.+.+ .+++.+.|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 446677877654 9999999999998 32 11 122222 23566899999999653
Q ss_pred ----------HHHhhcCeEEEEeCC
Q psy11928 133 ----------LIRDTECTLWVIENQ 147 (184)
Q Consensus 133 ----------~~~~~~~~i~~l~~g 147 (184)
.+..+|+.++.+..+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~ 230 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI 230 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEe
Confidence 256788887777654
No 136
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.53 E-value=0.00024 Score=52.47 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=35.6
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY 120 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 120 (184)
++..+|+|++|++.++|++..+|+++ +|+.....+.+.+...
T Consensus 106 ~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 106 PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 56789999999999999999999876 6888888888777543
No 137
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.51 E-value=0.0012 Score=54.30 Aligned_cols=67 Identities=22% Similarity=0.169 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQ 147 (184)
Q Consensus 76 SgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g 147 (184)
+++..++..|+.++..+|+.+++|||... ...+ +.+.+..-..|++.++|..+ +...++|+..+..+
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRGG---EAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQ 302 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCST---HHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTT
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhc
Confidence 34556888999999999999999999862 2222 33333332347899999965 66678888777655
No 138
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.24 E-value=0.00027 Score=57.63 Aligned_cols=131 Identities=10% Similarity=0.034 Sum_probs=71.2
Q ss_pred cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ 62 (184)
.|+|+++|++|+|.+.+ +..+.+++|... +.+..++.+.+.... +.. .-+++..|
T Consensus 148 ~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e~l~~~~~~~~d----~vliDtaG 221 (328)
T 3e70_C 148 KLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYDAIQHAKARGID----VVLIDTAG 221 (328)
T ss_dssp HHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHHHHHHHHHHTCS----EEEEEECC
T ss_pred HHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHHHHHHHHhccch----hhHHhhcc
Confidence 36788888889887532 112457777642 333334433332110 000 00133344
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHH---------H
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDER---------L 133 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~---------~ 133 (184)
...... ..+.+|| .+++++..+++++++|.++. . .....+..+-...+.|+|++||.-+ .
T Consensus 222 ~~~~~~-~l~~eL~-------~i~ral~~de~llvLDa~t~-~--~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~ 290 (328)
T 3e70_C 222 RSETNR-NLMDEMK-------KIARVTKPNLVIFVGDALAG-N--AIVEQARQFNEAVKIDGIILTKLDADARGGAALSI 290 (328)
T ss_dssp SCCTTT-CHHHHHH-------HHHHHHCCSEEEEEEEGGGT-T--HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHH
T ss_pred chhHHH-HHHHHHH-------HHHHHhcCCCCEEEEecHHH-H--HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHH
Confidence 432221 2334444 48899999999999996665 3 2233333333356889999999532 3
Q ss_pred HHhhcCeEEEEeCCeE
Q psy11928 134 IRDTECTLWVIENQTI 149 (184)
Q Consensus 134 ~~~~~~~i~~l~~g~i 149 (184)
+......|..+..|..
T Consensus 291 ~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 291 SYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHTCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 3344556777777754
No 139
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.92 E-value=0.0091 Score=50.97 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCC----------CCCCCHHHHHHHHHHHHhc-------CcEEEEEecCHHHHH
Q psy11928 77 GGQKARVALAELTLNAPDVIILDEP----------TNNLDIESIDALADAINEY-------KGGVIIVSHDERLIR 135 (184)
Q Consensus 77 gG~kqrv~laral~~~p~illlDEP----------t~~LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~ 135 (184)
+++++|..+.+|....|.+|++||+ +++.|......+.+++... +..||.+||..+.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 5778899999999999999999999 3466666555555555422 457888999987654
No 140
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.62 E-value=0.00013 Score=53.92 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=21.5
Q ss_pred cCCChhHHHHHHHHHHHhcCCCEE
Q psy11928 73 KDLSGGQKARVALAELTLNAPDVI 96 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~il 96 (184)
..|||||+||++||||++.+|++.
T Consensus 102 EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 102 EGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ESCGGGCCCEEEECSSGGGGGGGC
T ss_pred CCcCCCCCcEEEEEecccCCCccC
Confidence 459999999999999999999873
No 141
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.61 E-value=0.033 Score=44.33 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCC-CCCCCHHHHHHHHHHHHhc--CcEEEEEe
Q psy11928 77 GGQKARVALAELTLNAPDVIILDEP-TNNLDIESIDALADAINEY--KGGVIIVS 128 (184)
Q Consensus 77 gG~kqrv~laral~~~p~illlDEP-t~~LD~~~~~~l~~~l~~~--~~tiiivs 128 (184)
-.+-+|.+++.+...+++++|+||| +.++|......+.+..... ..+++++.
T Consensus 165 p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 3455788999988899999999999 9999998888887776543 23444443
No 142
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.58 E-value=4.7e-05 Score=63.61 Aligned_cols=80 Identities=11% Similarity=0.214 Sum_probs=60.0
Q ss_pred cccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEE-E
Q psy11928 71 KMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLW-V 143 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~-~ 143 (184)
.+..+|++. +| ++.++|||++++|+......++.+... +.|++ ||+...+..+|+++. +
T Consensus 130 ~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~ 195 (392)
T 1ni3_A 130 EIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQY 195 (392)
T ss_dssp CSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHH
T ss_pred eeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHH
Confidence 455577764 89 999999999999999998888887665 34543 999999999999998 8
Q ss_pred EeCC-eEEEecCChhHHHHHHHH
Q psy11928 144 IENQ-TIEEIDGDFDDYRKELLE 165 (184)
Q Consensus 144 l~~g-~i~~~~~~~~~~~~~~~~ 165 (184)
|++| ++.. .+.+++-..+.+.
T Consensus 196 L~~G~~~~~-~~~~~~~e~e~i~ 217 (392)
T 1ni3_A 196 LTETKQPIR-KGDWSNREVEIIN 217 (392)
T ss_dssp HHTTCSCGG-GSCCCHHHHHHHH
T ss_pred hccCCceee-cCCCCHHHHHHHH
Confidence 8999 7653 3554433334333
No 143
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.55 E-value=0.00044 Score=59.59 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=55.0
Q ss_pred HHHhhCCCCcccc--cccccCCChhHHHHH----------HHHHHHhcCCC-EEEeeCCCCCCCHHHHHHHHHHH-----
Q psy11928 56 KQLGTFGLAGHAH--TIKMKDLSGGQKARV----------ALAELTLNAPD-VIILDEPTNNLDIESIDALADAI----- 117 (184)
Q Consensus 56 ~~l~~~~l~~~~~--~~~~~~LSgG~kqrv----------~laral~~~p~-illlDEPt~~LD~~~~~~l~~~l----- 117 (184)
+++..+|+.+... .+....+|+||+|+. .+++++...|. ++++||+++.++... ..+.+.+
T Consensus 248 ~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~-~~~~~~l~~Lar 326 (512)
T 2ius_A 248 KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG-KKVEELIARLAQ 326 (512)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh-HHHHHHHHHHHH
Confidence 5677778764322 112346899998753 34556677887 899999998887432 2233332
Q ss_pred --HhcCcEEEEEecCHH-------HHHhhcCeEEE
Q psy11928 118 --NEYKGGVIIVSHDER-------LIRDTECTLWV 143 (184)
Q Consensus 118 --~~~~~tiiivsHd~~-------~~~~~~~~i~~ 143 (184)
+..|.++|++||++. ...++..||.+
T Consensus 327 ~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 327 KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 234679999999987 44556666654
No 144
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.44 E-value=5.7e-05 Score=63.61 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=32.3
Q ss_pred HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEe
Q psy11928 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIIL 98 (184)
Q Consensus 53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illl 98 (184)
.+...+..+|+... ..+.+|||||+|| |+|+++.+|++..-
T Consensus 275 ~~i~rL~~lgl~~~---~~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 275 GAVTRLRDMGIEPF---LISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHHHHHHTCCHH---HHHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHcCCcHH---HHHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 34445677888653 2678999999999 99999999998763
No 145
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.27 E-value=0.023 Score=45.31 Aligned_cols=67 Identities=6% Similarity=0.055 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----C-cEEEEE--ecCHHHHHhhcCeEEEEeCCeEE
Q psy11928 80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----K-GGVIIV--SHDERLIRDTECTLWVIENQTIE 150 (184)
Q Consensus 80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~-~tiiiv--sHd~~~~~~~~~~i~~l~~g~i~ 150 (184)
..+.++++ +.+|+++|+| |+|+|+.....+.++.+-. . .+++++ ||+...+.++++++..+..+.++
T Consensus 172 ~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 172 EFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 34555554 4899999999 8899987665554433221 1 234444 99999888888876555555554
No 146
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.25 E-value=0.00044 Score=55.53 Aligned_cols=83 Identities=8% Similarity=0.021 Sum_probs=50.4
Q ss_pred ccCcccCCceeEEe---cCC-----------eEEEEEecCCCC-------CCCccCCHHHHHH-------HhcC-----C
Q psy11928 3 AHCDLQPQQGELKK---NHR-----------LRIGRFDQHSGE-------HLTAEETPAEYLQ-------RLFN-----L 49 (184)
Q Consensus 3 ~~G~~~p~~G~i~~---~~~-----------~~ig~v~q~~~~-------~l~~~~~~~~~~~-------~~~~-----~ 49 (184)
|+ +..|++|+|.. .++ ..+||++|+|.. .+++ +++...+. ...+ .
T Consensus 185 l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e 262 (302)
T 2yv5_A 185 LT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNE 262 (302)
T ss_dssp HH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSC
T ss_pred HH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCC
Confidence 55 77899999976 321 137999998841 2333 33211111 1111 1
Q ss_pred CHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHH
Q psy11928 50 PYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE 87 (184)
Q Consensus 50 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lar 87 (184)
....+.++++.++++....+++++.|||..++++.|||
T Consensus 263 ~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 263 PGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp TTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23468899999999863334589999998888899876
No 147
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.23 E-value=0.011 Score=47.46 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=33.9
Q ss_pred HHHHhhCCCCcccccccccCCChhHHHHH---HHHHHHhcCCCEEEeeCCCC
Q psy11928 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARV---ALAELTLNAPDVIILDEPTN 103 (184)
Q Consensus 55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv---~laral~~~p~illlDEPt~ 103 (184)
..+++.+|+.. +...|+|+.+++ ++++++..+|+++|+|||..
T Consensus 152 ~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 34555556641 345789999999 89999999999999999975
No 148
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.14 E-value=0.034 Score=45.34 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=47.6
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEee-CCCCCCCHHHHHHHHHHHHh-c-CcEEEEEe--cCHH
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILD-EPTNNLDIESIDALADAINE-Y-KGGVIIVS--HDER 132 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlD-EPt~~LD~~~~~~l~~~l~~-~-~~tiiivs--Hd~~ 132 (184)
++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.+ . +..+|+|. ||+.
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 56789999998776 55555677789999 99999999987777766654 3 57788888 8864
No 149
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.67 E-value=0.0071 Score=49.53 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=22.6
Q ss_pred CCChhHHHHHHHHHHH---hc--CCCEEEeeCCC
Q psy11928 74 DLSGGQKARVALAELT---LN--APDVIILDEPT 102 (184)
Q Consensus 74 ~LSgG~kqrv~laral---~~--~p~illlDEPt 102 (184)
.+|+|++||..++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 5899999999999999 66 89999999997
No 150
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.66 E-value=0.052 Score=44.23 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=39.5
Q ss_pred cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH-HHHHHHhc-CcEEEEEe
Q psy11928 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-LADAINEY-KGGVIIVS 128 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~-l~~~l~~~-~~tiiivs 128 (184)
+.||.++.+|+..|...+.++++++.|+|... +..... +..+..+. +..+|+|-
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 67999999999999999999999999998654 433333 33333445 55677664
No 151
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=93.90 E-value=0.00033 Score=60.31 Aligned_cols=72 Identities=10% Similarity=0.011 Sum_probs=49.3
Q ss_pred HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-HhcCcEEEEEecCHHHH--HhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928 87 ELTLNAPDVIILDEPTNNLDIESIDALADAI-NEYKGGVIIVSHDERLI--RDTECTLWVIENQTIEEIDGDFDDYRK 161 (184)
Q Consensus 87 ral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~~~tiiivsHd~~~~--~~~~~~i~~l~~g~i~~~~~~~~~~~~ 161 (184)
|||..+ +|||+ ||++.+||. +..+...| +.++.++.++||+++.+ ..+++++..+..+.+.....++++..+
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~~ 102 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQAN 102 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHH
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEEeeccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHHH
Confidence 789999 99999 999999994 43332222 34456899999999887 566777766655555443445555443
No 152
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.21 E-value=0.006 Score=52.36 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=62.7
Q ss_pred cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCC
Q psy11928 2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFG 62 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 62 (184)
.|+|+++|++|+|.+.. +..++|++|... +....++.+.+... .+.+ .-+++..|
T Consensus 312 ~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p~~tV~e~l~~a~~~~~D----vVLIDTaG 385 (503)
T 2yhs_A 312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADSASVIFDAIQAAKARNID----VLIADTAG 385 (503)
T ss_dssp HHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCHHHHHHHHHHHHHHTTCS----EEEECCCC
T ss_pred HHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCHHHHHHHHHHHHHhcCCC----EEEEeCCC
Confidence 46788889999997641 224789998753 22333333333211 1110 00234444
Q ss_pred CCcccccccccCCChhHHHHHHHHHHHh-cCC-CEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11928 63 LAGHAHTIKMKDLSGGQKARVALAELTL-NAP-DVIILDEPTNNLDIESIDALADAINEYKGGVIIVSH 129 (184)
Q Consensus 63 l~~~~~~~~~~~LSgG~kqrv~laral~-~~p-~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH 129 (184)
....... .+.+| +|++.+++++. ..| .++|...|+.|.|.. ..+..+-...+.|.+++||
T Consensus 386 rl~~~~~-lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 386 RLQNKSH-LMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp SCCCHHH-HHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred ccchhhh-HHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence 4322111 23333 47888888764 446 456566688885543 2233333346789999999
No 153
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.80 E-value=0.057 Score=39.54 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
+.+.+|++++.+|+++++| ||++|..++..+.+.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4477899999999999999 999999999999888754
No 154
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.26 E-value=0.16 Score=38.18 Aligned_cols=65 Identities=25% Similarity=0.240 Sum_probs=45.4
Q ss_pred HHHHHHHHh--cCCCEEEeeCCCC--CCCHHHHHHHHHHHHhc--CcEEEEEecC-HHHHHhhcCeEEEEeC
Q psy11928 82 RVALAELTL--NAPDVIILDEPTN--NLDIESIDALADAINEY--KGGVIIVSHD-ERLIRDTECTLWVIEN 146 (184)
Q Consensus 82 rv~laral~--~~p~illlDEPt~--~LD~~~~~~l~~~l~~~--~~tiiivsHd-~~~~~~~~~~i~~l~~ 146 (184)
....++..+ .+.|++||||.+. .++......+.+.+.+. ...||+++.. ...+...+|-|-.|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 344455555 6689999999976 33444556688888754 3588888887 5666678998887754
No 155
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.97 E-value=0.077 Score=44.57 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=31.2
Q ss_pred cCCCEEEeeCCCCCCCH-HHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928 91 NAPDVIILDEPTNNLDI-ESIDALADAINE---YKGGVIIVSHDE 131 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~-~~~~~l~~~l~~---~~~tiiivsHd~ 131 (184)
.+|++|++||+..-.+. .....+...+.. .+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999877654 566677777654 367899999973
No 156
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.84 E-value=0.00015 Score=62.62 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=42.2
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE--EecCHHHHHhhcC
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVII--VSHDERLIRDTEC 139 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii--vsHd~~~~~~~~~ 139 (184)
...+|+||+||.+++. + | |+|||+.....+.+.+.++ +.|+++ +||+++++...|.
T Consensus 398 ~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 398 TMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 4568999998876641 1 7 9999998776666655443 568875 9999999988775
No 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.92 E-value=0.38 Score=38.69 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=36.3
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHh------cCcEEEEEecCHHHHHhhc
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINE------YKGGVIIVSHDERLIRDTE 138 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~ 138 (184)
.+|.++++||+... |......+...+.+ .+.++|++||+.+....+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 88888888888753 3568999999987655443
No 158
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.91 E-value=0.08 Score=42.92 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=38.6
Q ss_pred cCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc
Q psy11928 73 KDLSGGQKARVALAELTLN------APDVIILDEPTNNLDIESIDALADAINEY 120 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~ 120 (184)
..+|+|++|++..+++++. .|++++ +|++|......+++.|.+.
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 5689999999999999987 688876 9999999999999988763
No 159
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.81 E-value=0.0019 Score=48.62 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=42.4
Q ss_pred ccCCChhHHHHHHHH-HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH-HHhhcCe
Q psy11928 72 MKDLSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL-IRDTECT 140 (184)
Q Consensus 72 ~~~LSgG~kqrv~la-ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~-~~~~~~~ 140 (184)
...+|+|++|+++++ ++++.++.++++|||.. ..+...-..+++++++.+. +.+.+.|
T Consensus 109 ~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 109 ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 456799999999998 88888888888888841 1123344688999999887 4555554
No 160
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.23 E-value=0.008 Score=48.02 Aligned_cols=75 Identities=12% Similarity=-0.054 Sum_probs=38.4
Q ss_pred cccCcccCCceeEEe---cCC-----------eEEEEEecCCCC-C-------------CCccCCHHHHHHH--h-c-CC
Q psy11928 2 YAHCDLQPQQGELKK---NHR-----------LRIGRFDQHSGE-H-------------LTAEETPAEYLQR--L-F-NL 49 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~---~~~-----------~~ig~v~q~~~~-~-------------l~~~~~~~~~~~~--~-~-~~ 49 (184)
.|+|+..|++|+|.. .++ ..+|+++|.|.. . +.+..++ +++.. . . ..
T Consensus 188 ~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~~~e 266 (301)
T 1u0l_A 188 AINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDCNHVDE 266 (301)
T ss_dssp HHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTCCSSSC
T ss_pred HhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCCcCCCC
Confidence 578999999999986 221 147999998741 0 1111121 11110 0 0 11
Q ss_pred CHHHHHHHHhhCCCCcccccccccCCCh
Q psy11928 50 PYEKARKQLGTFGLAGHAHTIKMKDLSG 77 (184)
Q Consensus 50 ~~~~~~~~l~~~~l~~~~~~~~~~~LSg 77 (184)
...++.++++.+||+....+++++.||+
T Consensus 267 ~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 267 PECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp SSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2346888999999963333457888886
No 161
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.14 E-value=0.0022 Score=50.72 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=39.2
Q ss_pred ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCC------------CCCHHHHHHHHHHHHh
Q psy11928 70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTN------------NLDIESIDALADAINE 119 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~------------~LD~~~~~~l~~~l~~ 119 (184)
+.+.+|||||+||+.+++|+.++|++| |||+. --|...+..+++.+.+
T Consensus 133 ~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 133 QLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp HHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred HHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 467899999999999999999999975 99864 3467788888776643
No 162
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.41 E-value=0.89 Score=35.30 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH----------HHHHHHHHHHHhc-------CcEEEEEecCHH
Q psy11928 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDI----------ESIDALADAINEY-------KGGVIIVSHDER 132 (184)
Q Consensus 76 SgG~kqrv~laral~~~p~illlDEPt~~LD~----------~~~~~l~~~l~~~-------~~tiiivsHd~~ 132 (184)
+++++.+..+..+...+|.++++||+.+-++. .....+...+... +..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46778888888888899999999999776543 2233455555443 135777888754
No 163
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.35 E-value=0.17 Score=42.59 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCH
Q psy11928 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDE 131 (184)
Q Consensus 74 ~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~ 131 (184)
.|+-.. +.++++|..+++++++|+|+..|.+.....+.+.+.+ .|.+|+.+|.|-
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 455544 7999999999999999999999999888877777754 367888888653
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.13 E-value=0.27 Score=35.88 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 83 VALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 83 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
...|++++.+|++.++| ||++|......+.+.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999988887754
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=88.10 E-value=0.26 Score=40.36 Aligned_cols=60 Identities=22% Similarity=0.327 Sum_probs=43.1
Q ss_pred HHHHhhCCCCccc----ccccccCCChhHHHHHHHH----HHH-hcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 55 RKQLGTFGLAGHA----HTIKMKDLSGGQKARVALA----ELT-LNAPDVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 55 ~~~l~~~~l~~~~----~~~~~~~LSgG~kqrv~la----ral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
.++++.+++.... .+ ++..+|+|+++++.++ +++ ..+|++ +|+|++|......+.+.|.+
T Consensus 282 ~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 4566666654322 34 5788899988888877 555 434454 89999999999998888764
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.98 E-value=0.13 Score=44.80 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=40.6
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
.+.+|+|++|++..++....++.+|++||... |++.....|.+.|.+
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 36799999999999999999999999999987 899999999999974
No 167
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.55 E-value=0.54 Score=37.47 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=38.6
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH-HHHHHHHhcCcE--EEEEec
Q psy11928 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID-ALADAINEYKGG--VIIVSH 129 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~-~l~~~l~~~~~t--iiivsH 129 (184)
||.++++|+..|...+.++++++.|+|.. ++.... .+.++..+.+.. +|+|-|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~--~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQ--SVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCC--BHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCC--CHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 99999999999999999999999999864 344332 333334445555 777765
No 168
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=87.45 E-value=0.078 Score=39.22 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-CcEEEEEecCHHHH--HhhcCeEEEEeC
Q psy11928 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-KGGVIIVSHDERLI--RDTECTLWVIEN 146 (184)
Q Consensus 76 SgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~--~~~~~~i~~l~~ 146 (184)
|.|+.+|..++..+..+|+.+.+. .+.++|..+..+.+.+... +.++|+.+|.+.+. ...|+.+++++-
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 678889999988888877654333 3456677777777767553 45888889987665 567888888754
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.32 E-value=0.0023 Score=47.91 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=36.7
Q ss_pred HHH-HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928 85 LAE-LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI 144 (184)
Q Consensus 85 lar-al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l 144 (184)
.++ +++.+|++++|||||+++|..+.+.+.+.+.+...- +.++|.. ..+|.+++.
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivn 171 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIIN 171 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEEC
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEEC
Confidence 455 678888899999999999998888887776543211 2334511 356776543
No 170
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.64 E-value=0.013 Score=47.30 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=41.1
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL 133 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~ 133 (184)
+...+..+++.. .. .++..||+|++||+.++ .+||+.+...+.+++++.... .-++|+.+.
T Consensus 144 i~~~l~~~~li~-at-~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~ 204 (334)
T 1in4_A 144 IRIDIQPFTLVG-AT-TRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAA 204 (334)
T ss_dssp -----CCCEEEE-EE-SCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHH
T ss_pred ccccCCCeEEEE-ec-CCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHH
Confidence 344556666643 33 36899999999998654 667777777777777543110 113688777
Q ss_pred HHhhcCe
Q psy11928 134 IRDTECT 140 (184)
Q Consensus 134 ~~~~~~~ 140 (184)
+..++++
T Consensus 205 ~~~ia~~ 211 (334)
T 1in4_A 205 AEMIAKR 211 (334)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7766653
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.85 E-value=0.38 Score=38.46 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=29.1
Q ss_pred CCCEEEeeCCCCCCC---HHHHHHHHHHHHh---cCcEEEEEecCHHHHHh
Q psy11928 92 APDVIILDEPTNNLD---IESIDALADAINE---YKGGVIIVSHDERLIRD 136 (184)
Q Consensus 92 ~p~illlDEPt~~LD---~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~ 136 (184)
.|.++++||+.+..+ ......+.+.+.. .+.++|++||+......
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 388999999987652 3344455555532 24689999998865433
No 172
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=81.88 E-value=1.9 Score=34.27 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=32.8
Q ss_pred HHHHHHHHHh---cCCCEEEeeCCCCCCCH--------HHH----HHH----HHHHHhcCcEEEEEecCHH
Q psy11928 81 ARVALAELTL---NAPDVIILDEPTNNLDI--------ESI----DAL----ADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 81 qrv~laral~---~~p~illlDEPt~~LD~--------~~~----~~l----~~~l~~~~~tiiivsHd~~ 132 (184)
+.+..++.++ .+|+++++|+.++-... ..+ ..+ ..+.++++.+||+++|-..
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 4566666666 67999999999976532 111 222 2233456889999998643
No 173
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.18 E-value=0.0051 Score=48.30 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=30.6
Q ss_pred cCCChhHHHHHHHHHHHhcCCCE--EEeeCCCCCCCHH
Q psy11928 73 KDLSGGQKARVALAELTLNAPDV--IILDEPTNNLDIE 108 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~i--lllDEPt~~LD~~ 108 (184)
-.+|+| ||+++++++..+|++ +|+||+|+.||..
T Consensus 171 ~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 206 (261)
T 2eyu_A 171 LPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSL 206 (261)
T ss_dssp ECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHH
T ss_pred EecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHH
Confidence 357888 899999999999999 9999999998875
No 174
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.52 E-value=6.4 Score=31.92 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=31.3
Q ss_pred HHHHHHHHH--hcCCCEEEeeCCCCCCCHH--------------H---HHH---HHHHHHhcCcEEEEEecCH
Q psy11928 81 ARVALAELT--LNAPDVIILDEPTNNLDIE--------------S---IDA---LADAINEYKGGVIIVSHDE 131 (184)
Q Consensus 81 qrv~laral--~~~p~illlDEPt~~LD~~--------------~---~~~---l~~~l~~~~~tiiivsHd~ 131 (184)
+-..+++.+ ..+++++++|.++.-.... . .+. |...+++.+.+||+++|-.
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 344556655 3689999999999876311 0 111 2222356688999999854
No 175
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=76.16 E-value=0.29 Score=39.19 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=36.1
Q ss_pred cccCcccCCceeEEe---cCC---------e-EEEEEecCCCC-CCCc-cCCHHHHH----H---Hh------cC-----
Q psy11928 2 YAHCDLQPQQGELKK---NHR---------L-RIGRFDQHSGE-HLTA-EETPAEYL----Q---RL------FN----- 48 (184)
Q Consensus 2 ~~~G~~~p~~G~i~~---~~~---------~-~ig~v~q~~~~-~l~~-~~~~~~~~----~---~~------~~----- 48 (184)
.|+|...|++|+|.. .++ . .+|+++|.|.. .+.. ..++ +.+ . .. .+
T Consensus 192 ~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~ 270 (307)
T 1t9h_A 192 AISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLK 270 (307)
T ss_dssp HHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSS
T ss_pred HhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCcc
Confidence 578999999999975 211 1 16999999851 1111 2333 222 1 01 01
Q ss_pred CCHHHHHHHHhhCCCCcccccccccCCChhHHHH
Q psy11928 49 LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKAR 82 (184)
Q Consensus 49 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 82 (184)
.+...+.++++.++++....+ ...+++.|++||
T Consensus 271 e~~~~v~~aLe~~~L~~~r~~-~y~~lls~~~~~ 303 (307)
T 1t9h_A 271 EPKCAVKQAVEDGELKQYRYD-HYVEFMTEIKDR 303 (307)
T ss_dssp CSSCHHHHHHHHTSSCHHHHH-HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCChHHHHH-HHHHHHHHHhhc
Confidence 112457889999999764443 456677788763
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=76.13 E-value=3.1 Score=30.27 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL 133 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~ 133 (184)
+|.++++||.-. +|......+.+.+.+. +..+|++|++...
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 578999999765 7888888888888764 3578888887653
No 177
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=75.99 E-value=6.3 Score=29.80 Aligned_cols=51 Identities=20% Similarity=0.061 Sum_probs=36.8
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecC----------HHHHHhhcCeEEEE
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD----------ERLIRDTECTLWVI 144 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd----------~~~~~~~~~~i~~l 144 (184)
+|+++++||--. |+....+.+. .+...+.+||++.|+ ...+..++|.|..|
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~-~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVAN-ILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHH-HHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHHHHHHHH-HHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999964 7776555554 444458899999993 34455688988775
No 178
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=74.07 E-value=0.0087 Score=49.38 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=29.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCE--EEeeCCCCCCCHH
Q psy11928 74 DLSGGQKARVALAELTLNAPDV--IILDEPTNNLDIE 108 (184)
Q Consensus 74 ~LSgG~kqrv~laral~~~p~i--lllDEPt~~LD~~ 108 (184)
.+|+| ||+++++++..+|++ +|+||+|+.||..
T Consensus 283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 45888 889999999999999 9999999998864
No 179
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=73.86 E-value=6.8 Score=30.04 Aligned_cols=51 Identities=20% Similarity=0.097 Sum_probs=40.7
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecC----------HHHHHhhcCeEEEE
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD----------ERLIRDTECTLWVI 144 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd----------~~~~~~~~~~i~~l 144 (184)
.+.+++++||---..| ..++.+.+.+.+..||+..+| ...+..+||.|..|
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtel 149 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 149 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEee
Confidence 7789999999987754 677778888888999999999 33355678888766
No 180
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.55 E-value=3.8 Score=32.23 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHH
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERL 133 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~ 133 (184)
++.++++|| ...|++.....+.+.+.+.. ..+|++|++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 456999999 78899999999999998753 356677766543
No 181
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=69.43 E-value=13 Score=27.28 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=36.8
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCH----------HHHHhhcCeEEEEe
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE----------RLIRDTECTLWVIE 145 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~----------~~~~~~~~~i~~l~ 145 (184)
.+.+++++||-- .+|+.....+..+. ..+..||+..+|. ..+..++|.|..++
T Consensus 80 ~~~dvViIDEaq-fl~~~~v~~l~~l~-~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQ-FFDDEIVEIVNKIA-ESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGG-GSCTHHHHHHHHHH-HTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCC-CCCHHHHHHHHHHH-hCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 357999999954 37777655554443 3488999998854 44566888886653
No 182
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=66.68 E-value=3.7 Score=35.80 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=41.9
Q ss_pred ccCCChhH-HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH--HHHHHHHhcC-cEEEEEec
Q psy11928 72 MKDLSGGQ-KARVALAELTLNAPDVIILDEPTNNLDIESID--ALADAINEYK-GGVIIVSH 129 (184)
Q Consensus 72 ~~~LSgG~-kqrv~laral~~~p~illlDEPt~~LD~~~~~--~l~~~l~~~~-~tiiivsH 129 (184)
.+.|+.+. ++...+++.++.+|..++++.+++++|..... .+.+.+...+ .||+++||
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 66676654 57788999999999999999999999987433 2333333333 68888888
No 183
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=65.79 E-value=7 Score=31.29 Aligned_cols=52 Identities=10% Similarity=0.214 Sum_probs=31.6
Q ss_pred HHHHHHHHHh----cCCCEEEeeCCCCCCCHH--------H----HHHH----HHHHHhcCcEEEEEecCHH
Q psy11928 81 ARVALAELTL----NAPDVIILDEPTNNLDIE--------S----IDAL----ADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 81 qrv~laral~----~~p~illlDEPt~~LD~~--------~----~~~l----~~~l~~~~~tiiivsHd~~ 132 (184)
+.+..++.++ .+++++++|+.++-.... . ...+ ..+.++++.+||+++|...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 3344445554 679999999999866432 1 1222 2233456889999999654
No 184
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=64.49 E-value=6.5 Score=31.85 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=35.0
Q ss_pred cCCCEEEeeCCCCCCC---HHHHHHHHHHH---HhcCcEEEEEecCHHHHH
Q psy11928 91 NAPDVIILDEPTNNLD---IESIDALADAI---NEYKGGVIIVSHDERLIR 135 (184)
Q Consensus 91 ~~p~illlDEPt~~LD---~~~~~~l~~~l---~~~~~tiiivsHd~~~~~ 135 (184)
..|.++++||--.-++ +.....+.+.+ ++++..++++||++..+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 3589999999988885 55566566555 456889999999998765
No 185
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=62.12 E-value=33 Score=26.72 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhh
Q psy11928 84 ALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDT 137 (184)
Q Consensus 84 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~ 137 (184)
++..+...+.+.++|+ ++.|+......+.+..+++|..+++-.|+.+++.+.
T Consensus 134 qi~ea~~~GAD~VlLi--~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A 185 (272)
T 3tsm_A 134 QVYEARSWGADCILII--MASVDDDLAKELEDTAFALGMDALIEVHDEAEMERA 185 (272)
T ss_dssp HHHHHHHTTCSEEEEE--TTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHH
T ss_pred HHHHHHHcCCCEEEEc--ccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 3677889999999996 457888888888888899999999999999998763
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=61.87 E-value=9.3 Score=29.86 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=26.5
Q ss_pred hcCCCEEEeeCCCCC-CCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11928 90 LNAPDVIILDEPTNN-LDIESIDALADAINE---YKGGVIIVSH 129 (184)
Q Consensus 90 ~~~p~illlDEPt~~-LD~~~~~~l~~~l~~---~~~tiiivsH 129 (184)
..+|++|++||+..- -+......+...++. .+..+|++|+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 356999999998652 233566667776653 3566666665
No 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=59.02 E-value=0.066 Score=41.75 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=24.6
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEP 101 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEP 101 (184)
.+.+|||||+||+.+++|+.++|++ +|++
T Consensus 166 ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 166 LLVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp HHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred HHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 4567999999999999999999986 5655
No 188
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=58.66 E-value=13 Score=30.04 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=30.1
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIR 135 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 135 (184)
.+|++++|-|..|++....+.+ + .++.++++|.+.....
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~~l----~-~~g~ivyvsc~p~t~a 333 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEKMV----Q-AYPRILYISCNPETLC 333 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHHHH----T-TSSEEEEEESCHHHHH
T ss_pred CCCEEEECcCccccHHHHHHHH----h-CCCEEEEEECCHHHHH
Confidence 5799999999999987655443 3 4678999999876543
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=56.76 E-value=16 Score=32.11 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=34.1
Q ss_pred HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH
Q psy11928 88 LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL 133 (184)
Q Consensus 88 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~ 133 (184)
.-..+.-++++| |++++++..+..+ ..+.+.+..+|++.|.++.
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~~~-~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTERAW-TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHHHH-HHHHHTTCCEEEEEECGGG
T ss_pred HhhcCcEEEEEc-CCcccchhHHHHH-HHHHHccCCEEEEecCCch
Confidence 346788899999 9999999877544 4555668888899998775
No 190
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=56.28 E-value=15 Score=26.03 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=30.4
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHH
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDER 132 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~ 132 (184)
.++.++++||. ..++......+.+.+.+.. ..+|++|+...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 56889999995 5678888888888887643 45677776654
No 191
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=55.68 E-value=16 Score=27.85 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=26.1
Q ss_pred HHHHHhcCCCEEEeeCCCCC-CCHHH---HHHHHHHHHhcCcEEEEEec
Q psy11928 85 LAELTLNAPDVIILDEPTNN-LDIES---IDALADAINEYKGGVIIVSH 129 (184)
Q Consensus 85 laral~~~p~illlDEPt~~-LD~~~---~~~l~~~l~~~~~tiiivsH 129 (184)
+..++..+|+++|+|||-.. .+... +.+....+...+..++.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 33445568999999998642 33211 22222223344678888888
No 192
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=55.15 E-value=7.9 Score=28.26 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=25.4
Q ss_pred hcCCCEEEeeCCCCCCCHHH--HHHHHHHHHhc---CcE-EEEEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIES--IDALADAINEY---KGG-VIIVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~--~~~l~~~l~~~---~~t-iiivsHd 130 (184)
+.+|.++++||... ++... ...+.+.+... +.. +|++|+.
T Consensus 102 ~~~~~vliiDe~~~-~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 102 LEQFDLICIDDVDA-VAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGGSSEEEEETGGG-GTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ccCCCEEEEecccc-ccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 36799999999654 33322 56666666532 444 7887773
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=54.59 E-value=13 Score=29.71 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=37.5
Q ss_pred cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---hcC-cEEEEEec
Q psy11928 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN---EYK-GGVIIVSH 129 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~---~~~-~tiiivsH 129 (184)
++.+++++++..+++..+.+|+++|+.-..+..|..... ..++++ ..+ .+|+++|.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~-~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD-AIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-HHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-HHHHHHHhcccCCCEEEEEeC
Confidence 346778899999999999999988887544445544322 233333 334 47777776
No 194
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=54.57 E-value=83 Score=25.32 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=40.0
Q ss_pred HHHHHHHHHh--cCCCEEEeeCCCCCCCH--------------HH--HHHHH----HHHHhcCcEEEEEecCH-------
Q psy11928 81 ARVALAELTL--NAPDVIILDEPTNNLDI--------------ES--IDALA----DAINEYKGGVIIVSHDE------- 131 (184)
Q Consensus 81 qrv~laral~--~~p~illlDEPt~~LD~--------------~~--~~~l~----~~l~~~~~tiiivsHd~------- 131 (184)
+-+.+++.++ .+|+++++|.-++-... .+ ...++ .+.++.+.+||++.|-.
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 3455566554 57999999986655431 11 11222 22344578999999872
Q ss_pred ---------HHHHhhcCeEEEEeC
Q psy11928 132 ---------RLIRDTECTLWVIEN 146 (184)
Q Consensus 132 ---------~~~~~~~~~i~~l~~ 146 (184)
..+...++.++.++.
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred CCcccCCCcchhhhhCcEEEEEEe
Confidence 235667777777763
No 195
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=54.23 E-value=19 Score=26.64 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=30.4
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-----CcEEEEEec
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY-----KGGVIIVSH 129 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsH 129 (184)
..+|+++|+..+.+.++......+..+...+ ..++|++||
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 4578999999999888887776666665433 248888898
No 196
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=54.21 E-value=43 Score=27.08 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=30.0
Q ss_pred HHHHHHHHHh--cCCCEEEeeCCCCCCC---HH---------HH-HHHHHH-------HHhcCcEEEEEecCH
Q psy11928 81 ARVALAELTL--NAPDVIILDEPTNNLD---IE---------SI-DALADA-------INEYKGGVIIVSHDE 131 (184)
Q Consensus 81 qrv~laral~--~~p~illlDEPt~~LD---~~---------~~-~~l~~~-------l~~~~~tiiivsHd~ 131 (184)
+-+.+++.++ .++++++.|..++-.- .. .+ +.+.+. .++.+.+||+++|-.
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 3445566664 5699999999986541 00 11 112222 245578999998864
No 197
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=53.77 E-value=27 Score=26.20 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecC----------HHHHHhhcCeEEEEe
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD----------ERLIRDTECTLWVIE 145 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd----------~~~~~~~~~~i~~l~ 145 (184)
+.+++++||--- +|+...+.+ +.+...+..||+..+| ...+..+||.|..|+
T Consensus 101 ~~dvViIDEaQF-~~~~~V~~l-~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIVEVV-QVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHHHHH-HHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHHHHH-HHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999865 777666444 4444458899999994 444667888887764
No 198
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=52.73 E-value=25 Score=29.05 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=37.3
Q ss_pred cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH-HHHHHHHHhcCcEEEEEe
Q psy11928 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI-DALADAINEYKGGVIIVS 128 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~-~~l~~~l~~~~~tiiivs 128 (184)
+.||..+.+|+.-+...+.+.++++.|+|. +++... ..+.++..+.+..+|+|-
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 579999999998888878888899998874 444433 333444445566666664
No 199
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=52.66 E-value=51 Score=27.12 Aligned_cols=71 Identities=23% Similarity=0.102 Sum_probs=43.0
Q ss_pred cCCChhHHHHHHHHHHHh--cCCCEEEeeCCCCCCCH------HHH----HHHHH----HHHhcCcEEEEEecCHH----
Q psy11928 73 KDLSGGQKARVALAELTL--NAPDVIILDEPTNNLDI------ESI----DALAD----AINEYKGGVIIVSHDER---- 132 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~--~~p~illlDEPt~~LD~------~~~----~~l~~----~l~~~~~tiiivsHd~~---- 132 (184)
..+|..+- .+.++.+. .+|++++.|..+.-... .++ ..+.. +.++++.+||+++|--.
T Consensus 291 ~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~ 368 (444)
T 2q6t_A 291 PDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA 368 (444)
T ss_dssp TTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS
T ss_pred CCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence 45666553 33445444 58999999998765432 111 22333 33456889999998211
Q ss_pred ---------------HHHhhcCeEEEEe
Q psy11928 133 ---------------LIRDTECTLWVIE 145 (184)
Q Consensus 133 ---------------~~~~~~~~i~~l~ 145 (184)
.+++.||.|+.+.
T Consensus 369 r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 369 RPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp SSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 2456788887774
No 200
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.25 E-value=19 Score=27.65 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=26.9
Q ss_pred HHHHHHhcCC-CEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 84 ALAELTLNAP-DVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 84 ~laral~~~p-~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
.+..++...| .++++||. ..|++.....+.+.+.+
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence 3445555444 79999998 67899999999999865
No 201
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=51.62 E-value=11 Score=28.72 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCEEEeeCCCCC----------CCHHHHHHHHHHHHhc-------CcEEEEEecCHHHH
Q psy11928 83 VALAELTLNAPDVIILDEPTNN----------LDIESIDALADAINEY-------KGGVIIVSHDERLI 134 (184)
Q Consensus 83 v~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~ 134 (184)
-.+..+....|.++++||--.- -+......+..++... +..||.+|+..+.+
T Consensus 101 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 101 DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 3455566778899999997432 2445566666666542 23677788866543
No 202
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=51.37 E-value=6.7 Score=32.21 Aligned_cols=45 Identities=11% Similarity=0.008 Sum_probs=33.4
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 136 (184)
.|-++++||-.+-+.......+....+.+|..+++++|++..+..
T Consensus 279 ~~~~~~lDE~~~l~~~~~l~~~~~~~R~~g~~~~~~~Qs~~ql~~ 323 (437)
T 1e9r_A 279 RRLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 323 (437)
T ss_dssp CCEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred ccEEEEEEcccccccchhHHHHHHHHhccCCEEEEEecCHHHHHH
Confidence 356899999888664334455555566778999999999988763
No 203
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=48.92 E-value=18 Score=28.48 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=31.1
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHH
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDER 132 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~ 132 (184)
.++.++++||. ..|+..+...+.+.+.+.. ..+|++|++..
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 35689999995 4678888888988887753 46777887654
No 204
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=48.53 E-value=11 Score=27.13 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=23.9
Q ss_pred hcCCCEEEeeCCCC-CCCHHHHHHHH-HHHHh---cCcEEEEEe-cCHHHHHh
Q psy11928 90 LNAPDVIILDEPTN-NLDIESIDALA-DAINE---YKGGVIIVS-HDERLIRD 136 (184)
Q Consensus 90 ~~~p~illlDEPt~-~LD~~~~~~l~-~~l~~---~~~tiiivs-Hd~~~~~~ 136 (184)
+.++++|++||+-. .++......+. .++.. .+..+|++| ++++.+..
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 35678999999932 23332233232 34432 244455554 46666654
No 205
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=48.17 E-value=0.13 Score=39.39 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=25.9
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q psy11928 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTN 103 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~ 103 (184)
.+..||||++||+.+++|+.++|++ +|++.-
T Consensus 142 ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 142 LLVEMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp HHHHHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred HHHHHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 4567899999999999999999987 677653
No 206
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=47.61 E-value=51 Score=25.52 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=38.3
Q ss_pred HHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928 85 LAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 85 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 136 (184)
+..|...+.+.++| +.+.|+......+.+..+++|..+++..|+.+++..
T Consensus 128 v~~A~~~GAD~VlL--i~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~ 177 (272)
T 3qja_A 128 IHEARAHGADMLLL--IVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADR 177 (272)
T ss_dssp HHHHHHTTCSEEEE--EGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred HHHHHHcCCCEEEE--ecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHH
Confidence 45556789999888 333566677777788888889999999999988765
No 207
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=46.01 E-value=33 Score=28.56 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCEEEeeCCC-CC--CCHHHHHHHHHHHHh
Q psy11928 83 VALAELTLNAPDVIILDEPT-NN--LDIESIDALADAINE 119 (184)
Q Consensus 83 v~laral~~~p~illlDEPt-~~--LD~~~~~~l~~~l~~ 119 (184)
-+++.+...+++++|+|+|- .+ .|+....++.++...
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~ 209 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV 209 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh
Confidence 34556666799999999997 45 788777777665543
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=45.70 E-value=37 Score=26.23 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCEEEeeCCCC-------------CCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928 82 RVALAELTLNAPDVIILDEPTN-------------NLDIESIDALADAINEY----KGGVIIVSHDERLIR 135 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~-------------~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 135 (184)
+-.+..+....|.++++||--+ +........++..+... +..||.+|+..+.+.
T Consensus 98 ~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 98 REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 3445556667899999999642 22223345566666532 347888898876553
No 209
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=45.09 E-value=9.5 Score=30.03 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=24.9
Q ss_pred hcCCCEEEeeCCC-CCCCHHHHHHHH-HHHHh---cCcEEEEEec-CHHHHHh
Q psy11928 90 LNAPDVIILDEPT-NNLDIESIDALA-DAINE---YKGGVIIVSH-DERLIRD 136 (184)
Q Consensus 90 ~~~p~illlDEPt-~~LD~~~~~~l~-~~l~~---~~~tiiivsH-d~~~~~~ 136 (184)
+.++++|++||.- ..++......+. .++.. .+..+|++|+ .++.+..
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 4578999999983 234443343333 35542 2556677766 4665544
No 210
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=43.81 E-value=24 Score=24.11 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=31.5
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-CcEEEEEec
Q psy11928 89 TLNAPDVIILDEPTNNLDIESIDALADAINEY-KGGVIIVSH 129 (184)
Q Consensus 89 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsH 129 (184)
|..+.+++++.+|.+.+.....+.+.+++... ..|++++.|
T Consensus 73 lF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~ 114 (140)
T 1jql_B 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRG 114 (140)
T ss_dssp TTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEEC
T ss_pred CCCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEe
Confidence 57788999999998877767777888888764 356666665
No 211
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=42.34 E-value=67 Score=24.21 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=40.0
Q ss_pred ccCCChhHHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11928 72 MKDLSGGQKARVALAELTLN--APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd 130 (184)
-+..++.+..++.+.+..+. .|+++=++ =+...+......+.+..++.+..||++.||
T Consensus 75 GG~~~~~~~~~~~ll~~~~~~~~~d~iDvE-l~~~~~~~~~~~l~~~~~~~~~kvI~S~Hd 134 (238)
T 1sfl_A 75 GGYGQFTNDSYLNLISDLANINGIDMIDIE-WQADIDIEKHQRIITHLQQYNKEVIISHHN 134 (238)
T ss_dssp TSCBCCCHHHHHHHHHHGGGCTTCCEEEEE-CCTTSCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEE-ccCCCChHHHHHHHHHHHhcCCEEEEEecC
Confidence 45667778889988888874 47765554 333225566666666666667789999997
No 212
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=41.91 E-value=33 Score=26.88 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=32.3
Q ss_pred HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC-cE-EEEEecC
Q psy11928 87 ELTLNAPDVIILDEPTNNLDIESIDALADAINEYK-GG-VIIVSHD 130 (184)
Q Consensus 87 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~t-iiivsHd 130 (184)
..+..+.+++++||+...+.......+.+++.+.. .+ +|+++.+
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 34567899999999977677778888999998753 34 4445544
No 213
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=40.52 E-value=8.7 Score=30.08 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHHh--cCCCEEEeeCCCCCCCHHH-HHHHHHHHHh----cC--cEEEEEecCHHHHHhhcCeE
Q psy11928 74 DLSGGQKARVALAELTL--NAPDVIILDEPTNNLDIES-IDALADAINE----YK--GGVIIVSHDERLIRDTECTL 141 (184)
Q Consensus 74 ~LSgG~kqrv~laral~--~~p~illlDEPt~~LD~~~-~~~l~~~l~~----~~--~tiiivsHd~~~~~~~~~~i 141 (184)
.+|.|++ .+++.+. ..|.++++ |.+|... +..+.+.+.+ ++ ..+.+++|+-.-+..+++.+
T Consensus 100 ~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 100 RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 3898886 4556665 67888888 8899865 5555444432 34 25667777766655555543
No 214
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=40.39 E-value=69 Score=26.36 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=30.7
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD 136 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 136 (184)
..|++++|-|.+|++....+.+.. -....++++|++...+.+
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~~~l~~---l~p~givyvsc~p~tlar 394 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLVKRLNR---EKPGVIVYVSCNPETFAR 394 (425)
T ss_dssp TCSEEEECCCTTCSCHHHHHHHHH---HCCSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCccchHHHHHHHHHh---cCCCcEEEEECChHHHHh
Confidence 679999999999998765554432 124678999998776543
No 215
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=40.10 E-value=50 Score=25.56 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=47.8
Q ss_pred HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh---hcCeEEEEeC
Q psy11928 84 ALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD---TECTLWVIEN 146 (184)
Q Consensus 84 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~---~~~~i~~l~~ 146 (184)
+|.-|-+.++|.+|| -.+.|+......+.+.-+++|..+++=.|+.+++++ ...+++=+++
T Consensus 118 QI~eAr~~GADaILL--I~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINN 181 (258)
T 4a29_A 118 QIDDAYNLGADTVLL--IVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGIMS 181 (258)
T ss_dssp HHHHHHHHTCSEEEE--EGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHcCCCeeeh--HHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeC
Confidence 356666778888888 467899998889999999999999999999999876 3344554444
No 216
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=39.80 E-value=0.6 Score=35.06 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=26.0
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----c----CcEEEEEecCHHHHHhhcCeEE
Q psy11928 89 TLNAPDVIILDEPTNNLDIESIDALADAINE----Y----KGGVIIVSHDERLIRDTECTLW 142 (184)
Q Consensus 89 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~----~~tiiivsHd~~~~~~~~~~i~ 142 (184)
++..|+..+++|++.+.|..+...+.+.+.+ . ...+++++|+++.+..-..+++
T Consensus 145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 4567788888999999887776666554432 1 2467788888877765555443
No 217
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=39.12 E-value=54 Score=27.16 Aligned_cols=52 Identities=10% Similarity=0.241 Sum_probs=34.1
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH-HHHHHHhcCcE--EEEEe
Q psy11928 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-LADAINEYKGG--VIIVS 128 (184)
Q Consensus 75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~-l~~~l~~~~~t--iiivs 128 (184)
|+..+.+|+.-|...+.+.++++.|+|. +++..... +.++..+.+.. +|+|-
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID 317 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMID 317 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 8888888888777777778888888773 55554333 33334444555 66664
No 218
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=37.83 E-value=1.1e+02 Score=23.37 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=47.1
Q ss_pred HHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhh----cCeEEEEeC
Q psy11928 85 LAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDT----ECTLWVIEN 146 (184)
Q Consensus 85 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~----~~~i~~l~~ 146 (184)
+..+...+++.++|+=- .|+......+.+..+++|..+++=.|+.+++... ...++-+++
T Consensus 116 i~ea~~~GAD~ilLi~a--~l~~~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinn 179 (251)
T 1i4n_A 116 VKLASSVGADAILIIAR--ILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINT 179 (251)
T ss_dssp HHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeC
Confidence 45577899999999865 5888888888888889999999999999988753 334554554
No 219
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=37.76 E-value=3.4 Score=31.56 Aligned_cols=39 Identities=8% Similarity=-0.095 Sum_probs=26.3
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCC
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPD 94 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~ 94 (184)
+.++-+.+|. .... +.++.||||..|+...+++|+..|+
T Consensus 55 i~~le~~lg~-~L~~-R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 55 INEMNQLSEH-ILVE-RATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHHHHTS-CCEE-ECCCC-----EEECHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CeEE-ecCCCCCCCceEECHHHHHHHHHHH
Confidence 5556667788 3444 5789999999999999999998876
No 220
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=37.40 E-value=69 Score=21.47 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=26.8
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH 129 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH 129 (184)
+..++++||. ..|++.....+.+.+.+. +..+|.+|+
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 4689999996 467888888888888753 234555554
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=35.56 E-value=33 Score=30.94 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=23.1
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINE 119 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~ 119 (184)
..+.++++||. ..+++.....|.+.+.+
T Consensus 659 ~~~~vl~lDEi-~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 659 RPYSVILFDEI-EKAHPDVFNILLQILDD 686 (854)
T ss_dssp CSSEEEEESSG-GGSCHHHHHHHHHHHTT
T ss_pred CCCeEEEEecc-cccCHHHHHHHHHHhcc
Confidence 34589999999 56889988899998864
No 222
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=34.94 E-value=14 Score=28.93 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=33.8
Q ss_pred cccCCChhHHHHHHHHHHHhcCC--------------CEEEeeCCCC-CCCHHHHHHHHHHH
Q psy11928 71 KMKDLSGGQKARVALAELTLNAP--------------DVIILDEPTN-NLDIESIDALADAI 117 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p--------------~illlDEPt~-~LD~~~~~~l~~~l 117 (184)
++--+.+|+.++-++.+++-.+. .++++||.++ .|+....++..+..
T Consensus 198 ~vi~la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~~~~~~~~~~ 259 (289)
T 1ne7_A 198 EVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLM 259 (289)
T ss_dssp CEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHHHHHHHTH
T ss_pred EEEEEEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccchhhhhHHHH
Confidence 45566788888888888886554 3899999997 67766666655444
No 223
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=34.53 E-value=47 Score=25.28 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=30.4
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHH
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDER 132 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~ 132 (184)
.++.++++||. ..++......+.+.+.+.. ..+|++|....
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 56889999996 5677888888888887753 35666776654
No 224
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=34.48 E-value=52 Score=26.09 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCEEEeeCC
Q psy11928 81 ARVALAELTLNAPDVIILDEP 101 (184)
Q Consensus 81 qrv~laral~~~p~illlDEP 101 (184)
.+..+..+-..+|.+|++||.
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETH
T ss_pred HHHHHHHHHhcCCeEEEEeCc
Confidence 344555566678999999997
No 225
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=34.22 E-value=90 Score=19.81 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=23.5
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
-.+|+++|+|-...+.|.. .+.+.+++. ...||++|..
T Consensus 44 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 44 TLKPDIVIIDVDIPGVNGI---QVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHCCSEEEEETTCSSSCHH---HHHHHHHHTTCCSEEEEEECC
T ss_pred hcCCCEEEEecCCCCCChH---HHHHHHHhcCCCCeEEEEeCC
Confidence 4689999999888776643 344444443 2345555543
No 226
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=34.06 E-value=18 Score=26.03 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=34.0
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHH----------HHHhhcCeEEEEe
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDER----------LIRDTECTLWVIE 145 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~----------~~~~~~~~i~~l~ 145 (184)
.+++++++||--. +++.....+..+..+ +..|+++.++.+ .+...+|.+..++
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHHHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999753 665544555444444 788888888543 1334577776653
No 227
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=33.69 E-value=97 Score=23.08 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=35.5
Q ss_pred HHHHHHHHHh---cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC----cEEEEEecCHHHHH
Q psy11928 81 ARVALAELTL---NAPDVIILDEPTNNLDIESIDALADAINEYK----GGVIIVSHDERLIR 135 (184)
Q Consensus 81 qrv~laral~---~~p~illlDEPt~~LD~~~~~~l~~~l~~~~----~tiiivsHd~~~~~ 135 (184)
.|+++..||+ .+-++++.|+-. +|....+.+.+.|+.++ ..+++|+.|..+..
T Consensus 106 rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~LiV~~~~~~~~ 165 (210)
T 3v2d_F 106 RKKGLAMAVADRAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRR 165 (210)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceEEEeCChhHHH
Confidence 4577777774 456799999864 55556677888888765 35677766654443
No 228
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=32.97 E-value=92 Score=23.25 Aligned_cols=51 Identities=16% Similarity=0.009 Sum_probs=39.8
Q ss_pred HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhh
Q psy11928 86 AELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDT 137 (184)
Q Consensus 86 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~ 137 (184)
-.+...+.+++++|-. ..++|.....+.+.+++.+..++...|+.+++...
T Consensus 95 ~~~~~aGad~I~l~~~-~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a 145 (229)
T 3q58_A 95 DALAQAGADIIAFDAS-FRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISC 145 (229)
T ss_dssp HHHHHHTCSEEEEECC-SSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred HHHHHcCCCEEEECcc-ccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence 3456789999999964 44566667778888888888899999999998753
No 229
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=32.73 E-value=42 Score=27.72 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHH
Q psy11928 79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134 (184)
Q Consensus 79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~ 134 (184)
+.+....+...+.+++++|+......-......++.+.+.+.+..+|++.+-.+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 67777778888888998888776654333445678888888788888887765544
No 230
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=32.34 E-value=99 Score=22.30 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=29.5
Q ss_pred HHHHHHHHHh---cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEec
Q psy11928 81 ARVALAELTL---NAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSH 129 (184)
Q Consensus 81 qrv~laral~---~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsH 129 (184)
.|+++..||+ .+-++++.|+- .++....+.+.++|+.++ ..+++|+.
T Consensus 74 rrlAl~sALs~k~~~~~lvVvd~~--~~~~~KTK~~~~~l~~l~~~~~~LiV~~ 125 (175)
T 2ftc_D 74 RALGLKVALTVKLAQDDLHIMDSL--ELPTGDPQYLTELAHYRRWGDSVLLVDL 125 (175)
T ss_pred HHHHHHHHHHHhccCCCEEEEecc--cCCCCCHHHHHHHHHHCCCCCceEEEEC
Confidence 4566666663 35578888874 344555677888887765 34555543
No 231
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=32.29 E-value=1.9e+02 Score=24.19 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=47.6
Q ss_pred HHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhh---cCeEEEEeC
Q psy11928 85 LAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDT---ECTLWVIEN 146 (184)
Q Consensus 85 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~---~~~i~~l~~ 146 (184)
+..+-..+++.++|+=- .|+......+.+..+++|..+++=.|+.+++.+. ...++-+++
T Consensus 123 i~ea~~~GAD~ILLi~a--~l~~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~iIGinn 185 (452)
T 1pii_A 123 IYLARYYQADACLLMLS--VLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINN 185 (452)
T ss_dssp HHHHHHTTCSEEEEETT--TCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHcCCCEEEEEcc--cCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCCEEEEeC
Confidence 55577899999999855 6888888888888899999999999999998753 234555554
No 232
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=32.28 E-value=69 Score=20.01 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=25.4
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11928 98 LDEPTNNLDIESIDALADAINEYKGGVIIVS 128 (184)
Q Consensus 98 lDEPt~~LD~~~~~~l~~~l~~~~~tiiivs 128 (184)
..|++.|||......-++.|.+.|++-||-+
T Consensus 40 ~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~ 70 (79)
T 3htu_A 40 EDEEFHGLDEATLLRALQALQQEHKAEIITV 70 (79)
T ss_dssp TTSTTTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCcccCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 4579999999998888888888888777654
No 233
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=31.67 E-value=99 Score=23.10 Aligned_cols=51 Identities=12% Similarity=0.006 Sum_probs=39.8
Q ss_pred HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhh
Q psy11928 86 AELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDT 137 (184)
Q Consensus 86 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~ 137 (184)
-.++..+.+++++|-. ..++|.....+.+.+++.+..++...|+.+++...
T Consensus 95 ~~~~~~Gad~V~l~~~-~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a 145 (232)
T 3igs_A 95 DALAQAGAAIIAVDGT-ARQRPVAVEALLARIHHHHLLTMADCSSVDDGLAC 145 (232)
T ss_dssp HHHHHHTCSEEEEECC-SSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHH
T ss_pred HHHHHcCCCEEEECcc-ccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHH
Confidence 3456789999999964 44566667778888888888899999999988653
No 234
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=31.43 E-value=50 Score=25.45 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=29.9
Q ss_pred CCCEEEeeCCCCCCC-HHHHHHHHHHHHhc--CcEEEEEecCHH
Q psy11928 92 APDVIILDEPTNNLD-IESIDALADAINEY--KGGVIIVSHDER 132 (184)
Q Consensus 92 ~p~illlDEPt~~LD-~~~~~~l~~~l~~~--~~tiiivsHd~~ 132 (184)
+++++++||.- .|. ......+.+.+.+. +..+|++|++..
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 78999999984 455 66677788888764 457888888765
No 235
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=31.23 E-value=95 Score=19.20 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=22.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--Cc-EEEEEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KG-GVIIVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~-tiiivsHd 130 (184)
-.+|+++++|--..+.|-. .+.+.+++. .. .|+++++.
T Consensus 45 ~~~~dlil~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 45 ELKPDIVTMDITMPEMNGI---DAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HHCCSEEEEECSCGGGCHH---HHHHHHHHHCTTCCEEEEECTT
T ss_pred hcCCCEEEEeCCCCCCcHH---HHHHHHHhhCCCCeEEEEeCCC
Confidence 3579999999877665532 344445432 23 44455544
No 236
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.89 E-value=41 Score=25.61 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHH
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDER 132 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~ 132 (184)
++.++++||. ..++......+.+.+.+.. ..+|++|++..
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 4889999995 4566777777888887753 46777887754
No 237
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=29.56 E-value=1e+02 Score=22.43 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=33.4
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCCCC-CCCHHHHH-HHHHHHHhcC--cEEEEE-ecCHHHHH
Q psy11928 76 SGGQKARVALAELTLNAPDVIILDEPTN-NLDIESID-ALADAINEYK--GGVIIV-SHDERLIR 135 (184)
Q Consensus 76 SgG~kqrv~laral~~~p~illlDEPt~-~LD~~~~~-~l~~~l~~~~--~tiiiv-sHd~~~~~ 135 (184)
+.|.-.+. ....+.+.+++++||.-. ++|..... .+..++.... .+++++ |.+.+.+.
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~ 224 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFC 224 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHH
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHH
Confidence 34555444 344688999999999976 57776653 3344444332 244443 44444433
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=29.39 E-value=42 Score=30.16 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCC----------HHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNLD----------IESIDALADAINEY----KGGVIIVSHDERLIRD 136 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~LD----------~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~ 136 (184)
+..+..+....|.++++||+-..+. ......+...+... ...+|.+||+.+.+..
T Consensus 287 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 3455566677899999999854432 22334444555432 3578889998766544
No 239
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=28.92 E-value=1e+02 Score=18.87 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=22.8
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEE-EEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVI-IVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tii-ivsHd 130 (184)
-.+|+++++|-...+.|.. .+.+.+++. ...+| ++++.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 83 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGL---EVAGEIRKKKKDAKIILLTAYS 83 (116)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHHCTTCCEEEEESCG
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHccCCCCeEEEEECCc
Confidence 4679999999877776643 344445443 23344 44443
No 240
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=28.84 E-value=62 Score=23.79 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=38.0
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH----------HHhhcCeEEEE
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL----------IRDTECTLWVI 144 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~----------~~~~~~~i~~l 144 (184)
..+.++++.||--=- .. ..++.+.+.+.++.||+...|.++ +..+||.|..+
T Consensus 89 ~~~~DvIlIDEaQFf--k~-~ve~~~~L~~~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl 150 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFF--PD-IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 150 (195)
T ss_dssp HHTCSEEEESSGGGC--TT-HHHHHHHHHHTTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred ccCCCEEEEEchhhh--HH-HHHHHHHHHHCCCeEEEEecccccccccchhHHHHHHhcCeEEEe
Confidence 467899999998543 23 555556666789999999999665 44577877655
No 241
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=28.73 E-value=1.2e+02 Score=19.62 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=23.4
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd 130 (184)
-..|+++|+|-...+.|-. .+.+.+++. ...||++|..
T Consensus 47 ~~~~dlvllD~~lp~~~g~---~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 47 KHPPNVLLTDVRMPRMDGI---ELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp TSCCSEEEEESCCSSSCHH---HHHHHHHHHCTTCEEEEECCS
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhhCCCCcEEEEeCC
Confidence 4579999999887776643 344444432 3455555543
No 242
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=28.65 E-value=1.2e+02 Score=19.47 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=23.0
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--Cc-EEEEEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KG-GVIIVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~-tiiivsHd 130 (184)
...|+++++|--..+.|-. .+.+.+++. .. .|++++++
T Consensus 42 ~~~~dlvl~D~~lp~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTGV---DFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp HSCEEEEEEESCCSSSCHH---HHHHHHHHHCTTSEEEEEESCT
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHHhCCCCcEEEEeCCC
Confidence 4679999999877777643 334444432 23 44455554
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=28.54 E-value=41 Score=26.19 Aligned_cols=64 Identities=9% Similarity=0.202 Sum_probs=36.5
Q ss_pred HHHHHHHh---cCCCEEEeeCCCCCCC--------HHHH----HH----HHHHHHhcCcEEEEEecCH---H--------
Q psy11928 83 VALAELTL---NAPDVIILDEPTNNLD--------IESI----DA----LADAINEYKGGVIIVSHDE---R-------- 132 (184)
Q Consensus 83 v~laral~---~~p~illlDEPt~~LD--------~~~~----~~----l~~~l~~~~~tiiivsHd~---~-------- 132 (184)
+..++.++ .++++++.|.-++-.. ...+ .. |..+.++++.+||+++|-. +
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~ 271 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQ 271 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCE
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcC
Confidence 33344444 4689999998875431 1111 12 2233345678999988732 1
Q ss_pred -----HHHhhcCeEEEEeC
Q psy11928 133 -----LIRDTECTLWVIEN 146 (184)
Q Consensus 133 -----~~~~~~~~i~~l~~ 146 (184)
.+...+|.++.++.
T Consensus 272 ~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 272 AIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp ESSHHHHHHHCSEEEEEEE
T ss_pred CCCcHHHHhcCcEEEEEEe
Confidence 25556777777753
No 244
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=28.51 E-value=1.2e+02 Score=19.30 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=23.3
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--Cc-EEEEEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KG-GVIIVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~-tiiivsHd 130 (184)
-..|+++|+|--..+.|.. .+.+.+++. .. .|++++++
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 85 (136)
T 1mvo_A 45 TEKPDLIVLDVMLPKLDGI---EVCKQLRQQKLMFPILMLTAKD 85 (136)
T ss_dssp HHCCSEEEEESSCSSSCHH---HHHHHHHHTTCCCCEEEEECTT
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHcCCCCCCEEEEECCC
Confidence 3579999999887777643 344555543 23 34444443
No 245
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=28.42 E-value=87 Score=22.94 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCCEEEeeCCCC
Q psy11928 83 VALAELTLNAPDVIILDEPTN 103 (184)
Q Consensus 83 v~laral~~~p~illlDEPt~ 103 (184)
-.+..+....|.++++||.-.
T Consensus 89 ~~~~~a~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 89 SLFKEARARAPCIVYIDEIDA 109 (262)
T ss_dssp HHHHHHHHTCSEEEEEECC--
T ss_pred HHHHHHHhcCCeEEEEeCcch
Confidence 345555566799999999865
No 246
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.40 E-value=1.3e+02 Score=19.74 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=23.1
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
-..|+++|+|-...+.|.. .+.+.+++. ...||++|.
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp TSCCSEEEEESSCSSSCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhCCCCcEEEEec
Confidence 4679999999888776653 344444443 344555544
No 247
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=28.39 E-value=1.1e+02 Score=23.60 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=28.3
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhc-------------CcEEEEEecC
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEY-------------KGGVIIVSHD 130 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~-------------~~tiiivsHd 130 (184)
+..+|++||- ..|.......+...+.+. ...||.+|+.
T Consensus 96 ~~g~L~LDEi-~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEI-GDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESC-TTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEecc-ccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 4679999995 567888888888888643 2467777775
No 248
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=27.95 E-value=69 Score=21.49 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=27.5
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEec
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSH 129 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsH 129 (184)
+..+|++||. ..|++.....+.+.+.... ..+|.+|+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 5689999998 5788888888888885442 34555554
No 249
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=27.94 E-value=1.3e+02 Score=19.65 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=29.0
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEE-EEEecC
Q psy11928 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGV-IIVSHD 130 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~ti-iivsHd 130 (184)
+...+.|+. ++...--.+|+++|+|--..+.|.. .+.+.+++. ...| ++++++
T Consensus 49 v~~~~~~~~---al~~l~~~~~dlii~D~~l~~~~g~---~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 49 VLQAKNGQE---AIQLLEKESVDIAILDVEMPVKTGL---EVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp EEEESSHHH---HHHHHTTSCCSEEEECSSCSSSCHH---HHHHHHHHTTCSCEEEEEESCC
T ss_pred EEEECCHHH---HHHHhhccCCCEEEEeCCCCCCcHH---HHHHHHHHhCCCCeEEEEeCCC
Confidence 444555554 2223335679999999877766643 344445443 2344 444443
No 250
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=27.70 E-value=52 Score=25.78 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=31.4
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHH
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDER 132 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~ 132 (184)
.+++|+++||.- .|...+...+.+.+.+.. ..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 356899999974 577778888888887753 46778888875
No 251
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=27.63 E-value=1.1e+02 Score=18.97 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=22.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
..+|+++|+|--..+.|-. .+.+.+++. ...||++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDGI---EILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp HHCCSEEEEESCCTTCCHH---HHHHHHHHHCTTCEEEEEES
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHHhCCCCCEEEEEc
Confidence 4589999999877776643 334444432 334444443
No 252
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=27.58 E-value=1.3e+02 Score=19.62 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=22.9
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--Cc-EEEEEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KG-GVIIVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~-tiiivsHd 130 (184)
-.+|+++|+|--..+.|.. .+.+.+++. .. .|++++++
T Consensus 59 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 59 AHLPDVALLDYRMPGMDGA---QVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHCCSEEEEETTCSSSCHH---HHHHHHHHTTCSCEEEEEESCC
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhcCCCCeEEEEEccC
Confidence 3689999999877776642 344445443 23 44445554
No 253
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=27.15 E-value=1.2e+02 Score=19.01 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=22.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEE-EEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVI-IVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tii-ivsHd 130 (184)
..+|+++++|--..+.|.. .+.+.+++. ...|| +++|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSGV---ELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp GCCSEEEEEECCSTTSCHH---HHHHHHHHTTCCCCEEEEECTT
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHhcCCCCCEEEEECCC
Confidence 4579999999877666643 344455543 23344 44443
No 254
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=27.12 E-value=2e+02 Score=21.58 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=28.0
Q ss_pred CCCEEEeeCCCC--------CCCHHHHHHHHHHHHhcC--cEEEEEecC
Q psy11928 92 APDVIILDEPTN--------NLDIESIDALADAINEYK--GGVIIVSHD 130 (184)
Q Consensus 92 ~p~illlDEPt~--------~LD~~~~~~l~~~l~~~~--~tiiivsHd 130 (184)
++.+|++||--. ..+......+.+.+.+.. ..+|++|+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 688999999752 236777788888887653 466777753
No 255
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=26.58 E-value=48 Score=25.90 Aligned_cols=41 Identities=10% Similarity=0.206 Sum_probs=31.7
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHH
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERL 133 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~ 133 (184)
+.+|+|+||+- .|...+...|.+.+.+.. ..+|++|+++.-
T Consensus 82 ~~kvviIdead-~lt~~a~naLLk~LEep~~~t~fIl~t~~~~k 124 (305)
T 2gno_A 82 TRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRWHY 124 (305)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CceEEEeccHH-HhCHHHHHHHHHHHhCCCCCeEEEEEECChHh
Confidence 35899999984 567788888999998863 467778888754
No 256
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=26.57 E-value=41 Score=26.30 Aligned_cols=41 Identities=15% Similarity=-0.003 Sum_probs=24.8
Q ss_pred CCCEEEeeCCCCCCCHH-HHHHHHHHHHh-------cCcEEEEEecCHH
Q psy11928 92 APDVIILDEPTNNLDIE-SIDALADAINE-------YKGGVIIVSHDER 132 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~-~~~~l~~~l~~-------~~~tiiivsHd~~ 132 (184)
+|.++++||.-.-.+.. ....+..++.. .+..+|++|++..
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 36799999986542211 34455555542 2348899998873
No 257
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=26.39 E-value=25 Score=24.21 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=23.5
Q ss_pred cCCCEEEeeCCCCCC-----C---HHHHHHHHHHHHhcCcEEEEEecCHH
Q psy11928 91 NAPDVIILDEPTNNL-----D---IESIDALADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 91 ~~p~illlDEPt~~L-----D---~~~~~~l~~~l~~~~~tiiivsHd~~ 132 (184)
.+|.++++||--.-. + ......+...+.+....+|.+|+...
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE 163 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 357899999943211 1 22233444555454556777776544
No 258
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=26.34 E-value=1.9e+02 Score=23.96 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHHHHH--hcCCCEEEeeCCCCCCC-------H-HHHH----HHHHHHHhcCcEEEEEecCH
Q psy11928 83 VALAELT--LNAPDVIILDEPTNNLD-------I-ESID----ALADAINEYKGGVIIVSHDE 131 (184)
Q Consensus 83 v~laral--~~~p~illlDEPt~~LD-------~-~~~~----~l~~~l~~~~~tiiivsHd~ 131 (184)
+..++.+ -.+|+++++|= ...+. . .... .|..+.++++.+||+++|-.
T Consensus 343 ~~~i~~~~~~~~~~lvVID~-l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 343 LAKLAYMRSGLGCDVIILDH-ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHTTCCSEEEEEC-TTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHhcCCCEEEEcc-chhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 3344444 34799999994 33332 1 1112 23333456789999999843
No 259
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=26.18 E-value=37 Score=28.08 Aligned_cols=67 Identities=7% Similarity=0.120 Sum_probs=27.9
Q ss_pred cCCChhHHHHHHHHHHHhcCCCEEEeeCCC-CCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCe
Q psy11928 73 KDLSGGQKARVALAELTLNAPDVIILDEPT-NNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECT 140 (184)
Q Consensus 73 ~~LSgG~kqrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~ 140 (184)
.+++|||+..-.-..++..+ +.+++-=|| +|=-......+.+.+.+.+..+|++++-.+.+.+.+.+
T Consensus 2 ~~~tg~~q~~~~~~~~l~~~-~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~ 69 (459)
T 2z83_A 2 ASMTGGQQMGRGSPNMLRKR-QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEA 69 (459)
T ss_dssp -------------CGGGSTT-CEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhcC-CcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHH
Confidence 46788887655444444444 444444455 44111112222232333466788888988888776554
No 260
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.13 E-value=73 Score=26.63 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCC----------CCHHHHHHHHHHHHhc-------CcEEEEEecCHHHHHh
Q psy11928 81 ARVALAELTLNAPDVIILDEPTNN----------LDIESIDALADAINEY-------KGGVIIVSHDERLIRD 136 (184)
Q Consensus 81 qrv~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~~ 136 (184)
-|-.+..|-...|.|+++||--+- -+......+..+|.+. +..||.+|+.++.+..
T Consensus 264 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDp 336 (437)
T 4b4t_I 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDP 336 (437)
T ss_dssp HHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCT
T ss_pred HHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCH
Confidence 356667777788999999995432 2333344455555432 2368889988877654
No 261
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=25.64 E-value=1.3e+02 Score=19.05 Aligned_cols=38 Identities=5% Similarity=0.016 Sum_probs=22.5
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEE-EecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVII-VSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiii-vsHd 130 (184)
-..|+++|+|--..+.|-. .+.+.+++. ...+|+ ++++
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEGT---ELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp HSCCSEEEECSBCSSSBHH---HHHHHHHHHCTTSEEEEEESCC
T ss_pred cCCCCEEEEecCCCCCchH---HHHHHHHhhCCCCcEEEEeccc
Confidence 4689999999877666643 334444432 334444 4443
No 262
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.56 E-value=1.9e+02 Score=23.94 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCC----------CCHHHHHHHHHHHHhc-------CcEEEEEecCHHHHHh
Q psy11928 81 ARVALAELTLNAPDVIILDEPTNN----------LDIESIDALADAINEY-------KGGVIIVSHDERLIRD 136 (184)
Q Consensus 81 qrv~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~~ 136 (184)
-|-.+..|-...|.|+++||--+- -|......+..+|.+. +..||.+|+.++.+..
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDp 335 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDP 335 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCT
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCH
Confidence 456667777889999999997532 2333444444555432 2368889988776643
No 263
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=25.45 E-value=71 Score=24.78 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHhhCCCCcccccccccCCChhH-HHHHHHHHHHhcC-------CCEEEeeCCCCC
Q psy11928 48 NLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQ-KARVALAELTLNA-------PDVIILDEPTNN 104 (184)
Q Consensus 48 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~-kqrv~laral~~~-------p~illlDEPt~~ 104 (184)
+.+...+..+|...|+........+..|+... ++|+.++..++.. -+|+..||-.-.
T Consensus 97 ~vs~~tV~r~L~~~g~~~k~~~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~ 161 (345)
T 3hot_A 97 EVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIF 161 (345)
T ss_dssp TSCHHHHHHHHHHTTCEEEECCEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHhCCeeeccccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEE
Confidence 45566788889999997433333466888765 4578888887653 379999995433
No 264
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=25.40 E-value=1.1e+02 Score=19.23 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=19.8
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC---cEEEEEecC
Q psy11928 89 TLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130 (184)
Q Consensus 89 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~---~tiiivsHd 130 (184)
--.+|+++|+|-...+.|. ..+.+.+++.. ..|+++++.
T Consensus 48 ~~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 48 GGFTPDLMICDIAMPRMNG---LKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp TTCCCSEEEECCC-----C---HHHHHHHHHTTCCCCEEEEECCC
T ss_pred hcCCCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCEEEEEcCC
Confidence 3567999999976655432 23444444432 345555554
No 265
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=25.31 E-value=1.1 Score=36.78 Aligned_cols=34 Identities=9% Similarity=-0.090 Sum_probs=29.9
Q ss_pred ccccCCChhHHHHHHHHHHHhcCCCEEE-eeCCCC
Q psy11928 70 IKMKDLSGGQKARVALAELTLNAPDVII-LDEPTN 103 (184)
Q Consensus 70 ~~~~~LSgG~kqrv~laral~~~p~ill-lDEPt~ 103 (184)
.....+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 278 ~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 278 MNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp ECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 3567899999999998888899999988 999986
No 266
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=25.01 E-value=1.4e+02 Score=19.00 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=22.3
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
-.+|+++|+|--..+.|-. .+.+.+++. ...||++|.
T Consensus 47 ~~~~dlvilD~~lp~~~g~---~~~~~l~~~~~~~~ii~ls~ 85 (133)
T 3b2n_A 47 EYNPNVVILDIEMPGMTGL---EVLAEIRKKHLNIKVIIVTT 85 (133)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHHTTCSCEEEEEES
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHHHCCCCcEEEEec
Confidence 3579999999877666643 344445443 344555543
No 267
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=24.88 E-value=20 Score=26.29 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=19.8
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHH
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADA 116 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~ 116 (184)
..+|+|++-||..+|-|....+.+.+.
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~k 95 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDR 95 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHH
T ss_pred cCCCceEecCccCCCcchhhCHHHHHH
Confidence 468999999999999777554444433
No 268
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.84 E-value=1.3e+02 Score=18.75 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=23.3
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEec
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSH 129 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsH 129 (184)
-.+|+++|+|--..+.|.. .+.+.+++. ...||++|.
T Consensus 45 ~~~~dlii~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 45 TRGYDAVFIDLNLPDTSGL---ALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HSCCSEEEEESBCSSSBHH---HHHHHHHHSCCSSCCEEEEEEC
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhhccCCCCEEEEEC
Confidence 4679999999877776643 445555543 234555543
No 269
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=24.40 E-value=30 Score=23.69 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=25.0
Q ss_pred cCCCEEEeeCCCCCCC-------HHHHHHHHHHHHhcCcEEEEEecCHH
Q psy11928 91 NAPDVIILDEPTNNLD-------IESIDALADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 91 ~~p~illlDEPt~~LD-------~~~~~~l~~~l~~~~~tiiivsHd~~ 132 (184)
.+|.++++||--.-.+ ......+...+...+..+|++|+...
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 4577999999744321 12234455555554567788877654
No 270
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=24.29 E-value=23 Score=26.99 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=29.7
Q ss_pred cccCCChhHHHHHHHHHHHhcCC--------------CEEEeeCCCC-CCCHHHHH
Q psy11928 71 KMKDLSGGQKARVALAELTLNAP--------------DVIILDEPTN-NLDIESID 111 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~p--------------~illlDEPt~-~LD~~~~~ 111 (184)
++--+.+|+.++-+|.+++-.+. .++++||.++ .|+.....
T Consensus 198 ~vi~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~~~~ 253 (266)
T 1fs5_A 198 EVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLR 253 (266)
T ss_dssp CEEEEECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHHHHH
T ss_pred EEEEEecChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccchHH
Confidence 45556788888888888886543 6799999997 57654443
No 271
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.51 E-value=72 Score=26.79 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=28.7
Q ss_pred cCCCEEEeeCCCC--CCCHHHHHHHHHHHHhcCcEEEEEecCHH
Q psy11928 91 NAPDVIILDEPTN--NLDIESIDALADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 91 ~~p~illlDEPt~--~LD~~~~~~l~~~l~~~~~tiiivsHd~~ 132 (184)
.++.++++||--+ .=|......+.+.+.+.+..+|+++.+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5678999999732 22333346677777776777888888754
No 272
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=23.38 E-value=1.3e+02 Score=22.71 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=34.8
Q ss_pred ccCCChhH---HHHHHHHHHHh---cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC---cEEEEEecC
Q psy11928 72 MKDLSGGQ---KARVALAELTL---NAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130 (184)
Q Consensus 72 ~~~LSgG~---kqrv~laral~---~~p~illlDEPt~~LD~~~~~~l~~~l~~~~---~tiiivsHd 130 (184)
|.++|--. .+|+++..||+ .+-++++.|+- .++....+.+.++|+.++ ..+++|+.+
T Consensus 93 pR~~~~klnkK~rrlAl~sALs~k~~~~~LvVvd~~--~~~~~KTK~~~~~L~~l~~~~~~~LiV~~~ 158 (225)
T 1dmg_A 93 PRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDL--KLERPKTKSLKEILQNLQLSDKKTLIVLPW 158 (225)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC--CCSSCCHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred CccccccCCHHHHHHHHHHHHHHHHhCCCEEEEeec--ccCCCCHHHHHHHHHHcCCCCCCEEEEECC
Confidence 34555433 24577777763 45578888874 455556777888888775 445555543
No 273
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=23.31 E-value=1.3e+02 Score=19.18 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=20.0
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEe
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVS 128 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivs 128 (184)
-.+|+++|+|- ..+. . -..+.+.+++. ...||++|
T Consensus 46 ~~~~dlvi~d~-~~~~--~-g~~~~~~l~~~~~~~pii~ls 82 (142)
T 2qxy_A 46 REKIDLVFVDV-FEGE--E-SLNLIRRIREEFPDTKVAVLS 82 (142)
T ss_dssp TSCCSEEEEEC-TTTH--H-HHHHHHHHHHHCTTCEEEEEE
T ss_pred ccCCCEEEEeC-CCCC--c-HHHHHHHHHHHCCCCCEEEEE
Confidence 46799999997 5442 2 23445555443 23444444
No 274
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=23.20 E-value=1.6e+02 Score=19.20 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=21.2
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEe
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVS 128 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivs 128 (184)
..|+++|+|--..+.|.. .+.+.+++. ...||++|
T Consensus 46 ~~~dliild~~l~~~~g~---~~~~~l~~~~~~~pii~ls 82 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGL---ALFRKILALDPDLPMILVT 82 (155)
T ss_dssp TCCSEEEEESCCSSSCHH---HHHHHHHHHCTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhhCCCCCEEEEE
Confidence 579999999887776643 344444433 23444444
No 275
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=23.04 E-value=2.7e+02 Score=21.87 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=44.4
Q ss_pred HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH---HhcCc-EEEEEec
Q psy11928 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI---NEYKG-GVIIVSH 129 (184)
Q Consensus 54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l---~~~~~-tiiivsH 129 (184)
+.+.++.=|+.....--.....+.|.++-++=-..=-..|..++|.=|... +.+..+.+.+ .+... .+|+..|
T Consensus 71 l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~---e~~~~y~~~i~~~~~~~~nVlil~~~ 147 (294)
T 3g40_A 71 ISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENR---DRDEEIREIIRKASMYRMGVLLFSKH 147 (294)
T ss_dssp HHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSG---GGHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCCh---hhhHHHHHHHHHHHHhCceEEEEecC
Confidence 345566556543332224678999999887766666789999999988765 4444555555 44555 4555556
Q ss_pred CH
Q psy11928 130 DE 131 (184)
Q Consensus 130 d~ 131 (184)
.-
T Consensus 148 ~~ 149 (294)
T 3g40_A 148 PQ 149 (294)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 276
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=23.01 E-value=2.9e+02 Score=22.07 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=42.4
Q ss_pred HHhhCCCCcccccccccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCC-----HH---------HH-HH-----
Q psy11928 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLD-----IE---------SI-DA----- 112 (184)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD-----~~---------~~-~~----- 112 (184)
.++.+|++... -.+..-.-++++.+.++.++ ..+|++++.|--++-.- -. .+ +.
T Consensus 74 ra~~lGvd~d~--llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~L 151 (333)
T 3io5_A 74 YLRSMGVDPER--VIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLF 151 (333)
T ss_dssp HHHHTTCCGGG--EEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHH
T ss_pred HHHHhCCCHHH--eEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHH
Confidence 35677775321 12233335676666776666 34699999998776531 00 11 11
Q ss_pred --HHHHHHhcCcEEEEEecCHH
Q psy11928 113 --LADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 113 --l~~~l~~~~~tiiivsHd~~ 132 (184)
|..++++.+.++|++-|-..
T Consensus 152 rkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 152 RIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHhCCEEEEECCeee
Confidence 22234567889999999865
No 277
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=22.91 E-value=1.3e+02 Score=22.19 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhc-------------CcEEEEEecC
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEY-------------KGGVIIVSHD 130 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~-------------~~tiiivsHd 130 (184)
+..++++||.- .|+......+.+.+.+. ...+|++|+.
T Consensus 100 ~~~~l~lDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 100 DGGTLFLDELA-TAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TTSEEEEESGG-GSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcEEEEechH-hcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 56899999964 67888888888888642 2457777775
No 278
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=22.47 E-value=15 Score=28.45 Aligned_cols=65 Identities=22% Similarity=0.159 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCCCcccccccccCCCh-hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCc
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSG-GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG 122 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSg-G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 122 (184)
+.+-.++..+|.+.... -+++.|+. -|-+-++=|+|= ..+ .=|||.|+|.++...+.+...+.|.
T Consensus 171 etAiaml~dmG~~SvKf-fPM~Gl~~leEl~avAkAca~---~g~--~lEPTGGIdl~Nf~~I~~i~l~aGv 236 (275)
T 3m6y_A 171 KTAIALVRDMGGNSLKY-FPMKGLAHEEEYRAVAKACAE---EGF--ALEPTGGIDKENFETIVRIALEANV 236 (275)
T ss_dssp HHHHHHHHHHTCCEEEE-CCCTTTTTHHHHHHHHHHHHH---HTC--EEEEBSSCCTTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCeeeE-eecCCcccHHHHHHHHHHHHH---cCc--eECCCCCccHhHHHHHHHHHHHcCC
Confidence 55667788888875432 36666655 455555555543 334 4499999999999999998877653
No 279
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=22.29 E-value=81 Score=24.11 Aligned_cols=58 Identities=21% Similarity=0.140 Sum_probs=36.4
Q ss_pred cccCCChhHHHHHHHHHHHhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCH
Q psy11928 71 KMKDLSGGQKARVALAELTLNA--PDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131 (184)
Q Consensus 71 ~~~~LSgG~kqrv~laral~~~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~ 131 (184)
..+...+.+..++.+.+.++.. ++++=+. - .++......+.+..++.+..||++.||.
T Consensus 90 EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvE-l--~~~~~~~~~l~~~a~~~~~kiI~S~Hdf 149 (258)
T 4h3d_A 90 EGGEKLISRDYYTTLNKEISNTGLVDLIDVE-L--FMGDEVIDEVVNFAHKKEVKVIISNHDF 149 (258)
T ss_dssp GTCSCCCCHHHHHHHHHHHHHTTCCSEEEEE-G--GGCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCchhhHHh-h--hccHHHHHHHHHHHHhCCCEEEEEEecC
Confidence 3456777777888887766543 4544332 1 1233445566666666677899999974
No 280
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=22.16 E-value=1e+02 Score=24.12 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=29.5
Q ss_pred cCCCEEEeeCC------CCCCCHHHH-H-HHHHHHHhcCcEEEEEecCHH
Q psy11928 91 NAPDVIILDEP------TNNLDIESI-D-ALADAINEYKGGVIIVSHDER 132 (184)
Q Consensus 91 ~~p~illlDEP------t~~LD~~~~-~-~l~~~l~~~~~tiiivsHd~~ 132 (184)
....++|+|-| |+++..... . .++.+.+....+|+.+++|..
T Consensus 148 ~~~~vlIldqpdlLLa~t~~it~~~L~~~~I~~L~k~~~~lvvt~saD~p 197 (280)
T 4a8j_C 148 PTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKVLIIVSNSDIF 197 (280)
T ss_dssp TTSEEEEEECGGGHHHHSTTCCHHHHHHHTHHHHHHTCSEEEEEEECGGG
T ss_pred CCCeEEEEcChHHHHHhccCCCHHHHHHHHHHHHHHhcceEEEEeccCcc
Confidence 45679999999 667888765 4 444444444568888898873
No 281
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.02 E-value=1.8e+02 Score=19.19 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=22.0
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--C-cEEEEEecC
Q psy11928 92 APDVIILDEPTNNLDIESIDALADAINEY--K-GGVIIVSHD 130 (184)
Q Consensus 92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~--~-~tiiivsHd 130 (184)
+|+++|+|=-..+.|.. .+.+.+++. . ..|+++++.
T Consensus 83 ~~dliilD~~l~~~~g~---~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGI---TCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp GCCEEEECSSCSSSCHH---HHHHHHHHHCTTCCEEEEESCC
T ss_pred CCCEEEEeccCCCccHH---HHHHHHHhhCCCCcEEEEeccC
Confidence 78999999887776643 344444443 2 345555553
No 282
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=21.98 E-value=2e+02 Score=20.21 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=24.7
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11928 93 PDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130 (184)
Q Consensus 93 p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd 130 (184)
|+|+|+| +.|. -...+.+.+++.|..+.++.++
T Consensus 1 ~~i~iiD----n~~s-~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 1 ADILLLD----NIDS-FTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp CEEEEEE----CSCS-SHHHHHHHHHHTTCEEEEEETT
T ss_pred CcEEEEE----CCcc-HHHHHHHHHHHCCCeEEEEECC
Confidence 5789999 5554 3556678888888888888877
No 283
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=21.78 E-value=14 Score=28.25 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=23.3
Q ss_pred ccCCChhHHHHHHHHHHHhcC-CCEEEeeCCCC
Q psy11928 72 MKDLSGGQKARVALAELTLNA-PDVIILDEPTN 103 (184)
Q Consensus 72 ~~~LSgG~kqrv~laral~~~-p~illlDEPt~ 103 (184)
+=-+.+|..+--+|..||-.+ ..+|+.||.|+
T Consensus 216 vI~vA~G~~Ka~AI~aal~g~~~~~LItDe~aA 248 (255)
T 2okg_A 216 IIAVAGGSSKAEAIEAYFKKPRNTVLVTDEGAA 248 (255)
T ss_dssp EEEECCSGGGHHHHHHHTTSCCCEEEEEEHHHH
T ss_pred EEEEEcCHHHHHHHHHHHhCCCCCEEEECHHHH
Confidence 344678877777777777555 58999999874
No 284
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=21.56 E-value=1.9e+02 Score=19.29 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=34.6
Q ss_pred CCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHHHHH
Q psy11928 33 LTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVA 84 (184)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 84 (184)
+.....+...+...++.-...+..+++.+|++.. .++++||.-|-.++.
T Consensus 8 i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~---~r~~~Lt~~ei~~l~ 56 (114)
T 3r8n_M 8 IPDHKHAVIALTSIYGVGKTRSKAILAAAGIAED---VKISELSEGQIDTLR 56 (114)
T ss_dssp CCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTT---CCSTTCCHHHHHHHH
T ss_pred CCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcc---cCcccCCHHHHHHHH
Confidence 4445555444444567777888999999999753 479999998866654
No 285
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=21.36 E-value=1.7e+02 Score=22.18 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=23.1
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEY 120 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 120 (184)
.++.++++||- ..++......+...+.+.
T Consensus 89 ~~~~~l~lDEi-~~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 89 EEGDILFIDEI-HRLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp CTTCEEEETTT-TSCCHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECC-cccccchHHHHHHHHHhh
Confidence 57899999997 467788888888888653
No 286
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.13 E-value=1.6e+02 Score=18.37 Aligned_cols=36 Identities=25% Similarity=0.079 Sum_probs=21.1
Q ss_pred CCCEEEeeCCCCC-CCHHHHHHHHHHHHhc--Cc-EEEEEecC
Q psy11928 92 APDVIILDEPTNN-LDIESIDALADAINEY--KG-GVIIVSHD 130 (184)
Q Consensus 92 ~p~illlDEPt~~-LD~~~~~~l~~~l~~~--~~-tiiivsHd 130 (184)
+|+++|+|--..+ .|.. .+.+.+++. .. .|++++++
T Consensus 50 ~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp CCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESSC
T ss_pred CCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCCc
Confidence 7999999987664 6643 344444433 23 44445544
No 287
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.92 E-value=1.5e+02 Score=18.85 Aligned_cols=37 Identities=41% Similarity=0.418 Sum_probs=22.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
-.+|+++|+|--..+.|.. .+.+.+++. ...||++|.
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 49 LHAPDVIITDIRMPKLGGL---EMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHHTTCCCEEEECCC
T ss_pred ccCCCEEEEeCCCCCCCHH---HHHHHHHhcCCCCcEEEEec
Confidence 3589999999877776643 344455543 234555443
No 288
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=20.88 E-value=1.7e+02 Score=18.51 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=11.3
Q ss_pred hcCCCEEEeeCCCC
Q psy11928 90 LNAPDVIILDEPTN 103 (184)
Q Consensus 90 ~~~p~illlDEPt~ 103 (184)
-.+|+++|+|--..
T Consensus 45 ~~~~dlvi~d~~~~ 58 (140)
T 2qr3_A 45 EENPEVVLLDMNFT 58 (140)
T ss_dssp HSCEEEEEEETTTT
T ss_pred cCCCCEEEEeCCcC
Confidence 36799999998765
No 289
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=20.82 E-value=29 Score=25.41 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=11.7
Q ss_pred HHHHhcCcEEEEEecCH
Q psy11928 115 DAINEYKGGVIIVSHDE 131 (184)
Q Consensus 115 ~~l~~~~~tiiivsHd~ 131 (184)
+++.+...+|++|||--
T Consensus 135 ~l~~~~~~~vlvVsHg~ 151 (213)
T 3hjg_A 135 QIINDINDNLLIVTHGG 151 (213)
T ss_dssp HHHHHCCSCEEEEECHH
T ss_pred HHHHhCCCeEEEEeCHH
Confidence 33344458999999963
No 290
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=20.81 E-value=1.4e+02 Score=22.85 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=43.7
Q ss_pred HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeC-CCCCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11928 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDE-PTNNLDIESIDALADAINEYKGGVIIVS 128 (184)
Q Consensus 52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDE-Pt~~LD~~~~~~l~~~l~~~~~tiiivs 128 (184)
..+.+.|+..|++-... .+..+.. -..-+.+-|++|++- +.+.|++...+.|.+.+++ |+++|++.
T Consensus 20 ~~l~~aL~~~g~~V~~i--~~~~~~~--------~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~-GGgLi~~g 86 (259)
T 3rht_A 20 GYLAGLMTSWQWEFDYI--PSHVGLD--------VGELLAKQDLVILSDYPAERMTAQAIDQLVTMVKA-GCGLVMLG 86 (259)
T ss_dssp HHHHHHHHHTTCCCEEE--CTTSCBC--------SSHHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHhCCceEEEe--ccccccc--------ChhHHhcCCEEEEcCCccccCCHHHHHHHHHHHHh-CCeEEEec
Confidence 34556777777753221 2333311 123567899999985 4457999999999999986 88888884
No 291
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.80 E-value=1.8e+02 Score=18.87 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=22.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--Cc-EEEEEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KG-GVIIVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~-tiiivsHd 130 (184)
-..|+++|+|--..+.|.. .+.+.+++. .. .|++++++
T Consensus 49 ~~~~dlii~D~~l~~~~g~---~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGGI---EATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp TTCCSEEEECSCCSSSCHH---HHHHHHHHHCTTCCEEEEESCC
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhCCCCeEEEEECCC
Confidence 4579999999877776643 344445443 23 44444443
No 292
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.76 E-value=1.7e+02 Score=24.09 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCC----------CHHHHHHHHHHHHhc-------CcEEEEEecCHHHHH
Q psy11928 82 RVALAELTLNAPDVIILDEPTNNL----------DIESIDALADAINEY-------KGGVIIVSHDERLIR 135 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~ 135 (184)
|-.+..|-...|.|+++||--+-. |......+.++|.+. +..||.+|+.++.+.
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 455666777889999999965432 223344455555432 236788888766543
No 293
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=20.70 E-value=1.9 Score=36.50 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=29.8
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHH-HhcCcEEEEEecCHHHH
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAI-NEYKGGVIIVSHDERLI 134 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~~~tiiivsHd~~~~ 134 (184)
+.-|||||+ |.++.+||. +..+...| ..++.++-++||.+..+
T Consensus 17 ~~~~dvll~-p~~s~~~p~-~v~~~~eLt~~~~l~iP~is~~m~~v 60 (494)
T 1vrd_A 17 LTFDDVLLV-PQYSEVLPK-DVKIDTRLTRQIRINIPLVSAAMDTV 60 (494)
T ss_dssp CCGGGEEEC-CCCCCCCGG-GSCCCEESSSSCEESSSEEECCCTTT
T ss_pred cccccEEec-cccccCCCC-ceEEEehhhCCCccCceeEecchHHH
Confidence 456899999 999999998 33232222 34456777888887664
No 294
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=20.64 E-value=1.7e+02 Score=18.89 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=29.2
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-CcEEEEEecCHHHHHh
Q psy11928 91 NAPDVIILDEPTNNLDIESIDALADAINEY-KGGVIIVSHDERLIRD 136 (184)
Q Consensus 91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~~~ 136 (184)
.+|.|++.|. |+..+..+...+.+. +..++....+...+..
T Consensus 12 ~~~~vlivdd-----~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~ 53 (145)
T 3kyj_B 12 SPYNVMIVDD-----AAMMRLYIASFIKTLPDFKVVAQAANGQEALD 53 (145)
T ss_dssp CSEEEEEECS-----CHHHHHHHHHHHTTCTTEEEEEEESSHHHHHH
T ss_pred CCCeEEEEcC-----CHHHHHHHHHHHHhCCCceEEEEECCHHHHHH
Confidence 3567888887 577888888888887 5566657777665543
No 295
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=20.45 E-value=2.5e+02 Score=20.74 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCEEEeeCCC---------CCCCHHHHHHHHHHHHhc---C-c-EEEEEecCHHHHHh
Q psy11928 84 ALAELTLNAPDVIILDEPT---------NNLDIESIDALADAINEY---K-G-GVIIVSHDERLIRD 136 (184)
Q Consensus 84 ~laral~~~p~illlDEPt---------~~LD~~~~~~l~~~l~~~---~-~-tiiivsHd~~~~~~ 136 (184)
.+..+...++.+|++||-- ..........+.+.+... + . .||.+|+..+.+..
T Consensus 116 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 116 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 3444555679999999941 112223333344433321 2 2 36667888776654
No 296
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.36 E-value=1.7e+02 Score=24.21 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCEEEeeCCC----------CCCCHHHHHHHHHHHHhc-------CcEEEEEecCHHHHH
Q psy11928 82 RVALAELTLNAPDVIILDEPT----------NNLDIESIDALADAINEY-------KGGVIIVSHDERLIR 135 (184)
Q Consensus 82 rv~laral~~~p~illlDEPt----------~~LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~ 135 (184)
|-.+..|-...|.|+++||-- ++-|......+.++|.+. +..||.+|+.++.+.
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 445666777889999999962 233434444444444432 236788898766543
No 297
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=20.36 E-value=1.3e+02 Score=22.23 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHH---hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc------CcEEEEEecCHHH
Q psy11928 78 GQKARVALAELT---LNAPDVIILDEPTNNLDIESIDALADAINEY------KGGVIIVSHDERL 133 (184)
Q Consensus 78 G~kqrv~laral---~~~p~illlDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsHd~~~ 133 (184)
|++.+-.+.+++ ..+++++|+--+.+.+...... +.+.+.+. +.++|+++|-.+.
T Consensus 88 ~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 88 TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ-AVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHH-HHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHH-HHHHHHHHhChhhhccEEEEEEchHhc
Confidence 355556666666 3889988887666666554433 33444332 5689999985443
No 298
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.20 E-value=1.9e+02 Score=18.83 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=22.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH 129 (184)
-.+|+++|+|--..+.|.. .+.+.+++. ...||++|.
T Consensus 56 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDGP---TLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHHCTTSEEEEECC
T ss_pred cCCCCEEEEeCCCCcCcHH---HHHHHHHhHCCCCeEEEEEC
Confidence 4689999999887776643 333444433 344555554
No 299
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.15 E-value=1.8e+02 Score=18.54 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--Cc-EEEEEecC
Q psy11928 90 LNAPDVIILDEPTNNLDIESIDALADAINEY--KG-GVIIVSHD 130 (184)
Q Consensus 90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~-tiiivsHd 130 (184)
-..|+++|+|--..+.|.. .+.+.+++. .. .|+++++.
T Consensus 47 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGM---DILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp TTTCCEEEEESCCSSSCHH---HHHHHHHHHCTTCEEEEEECTT
T ss_pred CCCCCEEEEeCCCCCCcHH---HHHHHHHHhCCCCeEEEEECCC
Confidence 4689999999887776653 233444433 23 44445544
Done!