RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11928
(184 letters)
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 158 bits (401), Expect = 3e-46
Identities = 61/161 (37%), Positives = 100/161 (62%), Gaps = 3/161 (1%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLA 64
+L P G +K ++IG FDQH + L ++T E L F + ++ R LG FG
Sbjct: 371 ELGPLSGTVKVGETVKIGYFDQHR-DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429
Query: 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
G + LSGG+KAR+ LA+L L P++++LDEPTN+LDIES++AL +A+ +++G V
Sbjct: 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTV 489
Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
++VSHD + +W++E+ +EE +G ++DY ++ E
Sbjct: 490 LLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQKKE 529
Score = 106 bits (268), Expect = 2e-27
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
+ LSGG + RVALA L PD+++LDEPTN+LD+ESI+ L D + Y G VI+VSHD
Sbjct: 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHD 209
Query: 131 ERLIRDTECT-LWVIENQTIEEIDGDFDDYRKELLEAL 167
+ D T + ++ + G++ Y ++ E L
Sbjct: 210 RYFL-DNVATHILELDRGKLTPYKGNYSSYLEQKAERL 246
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 131 bits (332), Expect = 5e-36
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLA 64
+LQP G + ++ ++R+ F QH + L P Y+ R F +P +K R LG+FG+
Sbjct: 558 ELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 617
Query: 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
G+ M LSGGQK+RVA A++T P +++LDEP+N+LD+++++AL + ++GGV
Sbjct: 618 GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGV 677
Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKEL 163
++VSHDE LI + LWV+ + G F DY+K L
Sbjct: 678 LMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTL 716
Score = 57.9 bits (140), Expect = 3e-10
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 63 LAGHAHTIKM-----KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
LAG + T +M K SGG + R+ALA PD+++LDEPTN+LD+ ++ L +
Sbjct: 328 LAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL 387
Query: 118 NEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEAL 167
++ I+VSH + + + Q + GD+D + + E L
Sbjct: 388 LKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQL 437
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 122 bits (309), Expect = 8e-33
Identities = 61/162 (37%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYE-KARKQLGTFGLA 64
+L P GE+ +++G F QH E L A+E+P ++L RL E K R LG FG
Sbjct: 361 ELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQ 420
Query: 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
G T + + SGG+KAR+ LA + P++++LDEPTN+LD++ AL +A+ +++G +
Sbjct: 421 GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGAL 480
Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEA 166
++VSHD L+R T L+++ + +E DGD +DY++ L +
Sbjct: 481 VVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDV 522
Score = 56.3 bits (136), Expect = 1e-09
Identities = 28/91 (30%), Positives = 54/91 (59%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131
+ D SGG + R+ LA+ + D+++LDEPTN+LD++++ L + Y+G +I++SHD
Sbjct: 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDR 206
Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKE 162
+ + IE Q++ E G++ + +
Sbjct: 207 DFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQ 237
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 110 bits (277), Expect = 2e-31
Identities = 36/74 (48%), Positives = 53/74 (71%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
LSGG+K R+ALA+L L P++++LDEPTN+LD+ESI+AL +A+ EY G VI+VSHD +
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 135 RDTECTLWVIENQT 148
+ +E+
Sbjct: 131 DQVATKIIELEDGK 144
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 85.0 bits (211), Expect = 1e-19
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 35/173 (20%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSGE---HLTAEETPAE----------------YLQRL 46
LQ G + +L + FDQH E T + AE YLQ
Sbjct: 368 QLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQD- 426
Query: 47 FNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
F ++A +K LSGG++ R+ LA L L +++ILDEPTN+LD
Sbjct: 427 FLFHPKRAM--------------TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
Query: 107 IESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIE-NQTIEEIDGDFDD 158
+E+++ L + ++ Y+G V++VSHD + + +T W+ E N I G + D
Sbjct: 473 VETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525
Score = 72.3 bits (178), Expect = 3e-15
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
L GL A + LSGG + AL ++ PDV++LDEPTN+LDIE+I+ L +
Sbjct: 143 LAQLGLDPDA---ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL 199
Query: 118 NEYKGGVIIVSHDERLIR 135
++G +I +SHD IR
Sbjct: 200 KTFQGSIIFISHDRSFIR 217
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 82.4 bits (204), Expect = 3e-19
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 10/107 (9%)
Query: 31 EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALA 86
LT E E+ RL+ L E+A ++ L FGL A+ K++ LSGG K R+++A
Sbjct: 91 PELTVREN-LEFFARLYGLSKEEAEERIEELLELFGLEDKANK-KVRTLSGGMKQRLSIA 148
Query: 87 ELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG----GVIIVSH 129
L+ P+++ILDEPT+ LD ES + + + E +++ +H
Sbjct: 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 81.5 bits (202), Expect = 2e-18
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 9/174 (5%)
Query: 8 QPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYL---QRLFNL-PYE-KARKQLGTFG 62
QP G +K +++ DQ S + L +T E + + L E +R +G F
Sbjct: 373 QPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFN 431
Query: 63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG 122
G K+ LSGG++ RV LA+ + +V++LDEPTN+LD+E++ AL +A+ E+ G
Sbjct: 432 FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG 491
Query: 123 GVIIVSHDERLIRDTECT--LWVIENQTIEEIDGDFDDYRKELLEALGEVVNNP 174
+++SHD R D T L + +E +G++ +Y ++ LGE + P
Sbjct: 492 CAVVISHD-RWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGEDADQP 544
Score = 77.7 bits (192), Expect = 5e-17
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
LSGG++ RVAL L L+ PD+++LDEPTN+LD ES+ L + EY G V+ V+HD
Sbjct: 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHD 217
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 78.7 bits (195), Expect = 2e-18
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 31 EHLTAEE---TPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
LT E P + A + L GL K +LSGGQ+ RVA+A
Sbjct: 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155
Query: 88 LTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHDERL 133
+N P +I+ DEPT NLD ++ ++ L + E +I+V+HD L
Sbjct: 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 75.2 bits (186), Expect = 5e-17
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 32 HLTAEE---TPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAEL 88
LTA E P E+A + L GL + +LSGGQ+ RVA+A
Sbjct: 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-YPSELSGGQQQRVAIARA 154
Query: 89 TLNAPDVIILDEPTNNLDIES----IDALADAINEYKG-GVIIVSHDERLIR 135
N P +I+ DEPT NLD E+ ++ L + +N+ G +++V+HD L
Sbjct: 155 LANDPKIILADEPTGNLDSETGKEVMELLRE-LNKEAGTTIVVVTHDPELAE 205
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 74.2 bits (183), Expect = 8e-17
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 14/117 (11%)
Query: 27 QHSGEHLTAEETPAEYLQRLFNLP--YEKARKQLGTFGLAG----HAHTIKMKDLSGGQK 80
Q L + E L L L E+A L L H LSGGQK
Sbjct: 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL-----SLSGGQK 132
Query: 81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDERLI 134
R+A+A L+ D++I DEPT+ LD ++++ + + I E VI+++HD +
Sbjct: 133 QRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL 189
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 73.0 bits (180), Expect = 8e-17
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDE 131
LSGGQ+ RVALA L PD+++LDEPT+ LD S + L + + E VIIV+HD
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 132 RLIR 135
L
Sbjct: 141 ELAE 144
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 76.9 bits (190), Expect = 9e-17
Identities = 31/89 (34%), Positives = 56/89 (62%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
+K LSGG+K R+ +L + P+V+++DEPTN++D+ESI++L A+ +Y+G +I VSHD
Sbjct: 435 SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHD 494
Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159
+ + I + + G +++Y
Sbjct: 495 REFVSSLATRIIEITPDGVVDFSGTYEEY 523
Score = 72.2 bits (178), Expect = 3e-15
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIV 127
H M +++ G K RV LA+ + PD+++LDEPTNNLDI +I L D +NE +II+
Sbjct: 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIII 208
Query: 128 SHD 130
SHD
Sbjct: 209 SHD 211
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 74.0 bits (183), Expect = 9e-17
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E+ + L GL G LSGGQK RVA+A + PD+++LDEPT LD
Sbjct: 113 ERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 112 ALADAINEYKG---GVIIVSHDERLIRD 136
L + + + K +IIV+HD L+ +
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLE 199
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 75.5 bits (187), Expect = 2e-16
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
LSGG++ RVAL L L PD+++LDEPTN+LD ES+ L +++Y G V+ V+HD
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD 219
Score = 74.4 bits (184), Expect = 5e-16
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Query: 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL 113
+R +G F G K+ LSGG++ R+ LA+ +V++LDEPTN+LD+E++ AL
Sbjct: 425 SRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484
Query: 114 ADAINEYKGGVIIVSHDERLIRDTECT---LWVIENQTIEEIDGDFDDYRKELLEALGEV 170
+A+ E+ G +++SHD R D T + ++Q +E +G+F +Y ++ LG
Sbjct: 485 EEALLEFPGCAVVISHD-RWFLDRIATHILAFEGDSQ-VEWFEGNFQEYEEDKKRRLGAD 542
Query: 171 VNNP 174
P
Sbjct: 543 AARP 546
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 70.8 bits (174), Expect = 3e-16
Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 20/113 (17%)
Query: 7 LQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPY--- 51
LQP G + + R RIG Q L E T E L F L
Sbjct: 11 LQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDP--QLFPELTVRENL--FFGLRDKEA 66
Query: 52 -EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN 103
+A + L GL + LSGGQK RVA+A L P +++LDEPT
Sbjct: 67 DARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 70.3 bits (173), Expect = 2e-15
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 32 HLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLN 91
+LTA E L RL + ++ + L GL A K+K S G K R+ +A L
Sbjct: 86 NLTAREN-LRLLARLLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIALALLG 143
Query: 92 APDVIILDEPTNNLDIESIDALADAI---NEYKGGVIIVSH 129
PD++ILDEPTN LD + I L + I + V+I SH
Sbjct: 144 NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSH 184
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 67.8 bits (167), Expect = 1e-14
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
LSGG K R+ALA+ L+ P+++ILDEPT+ LD ES + + E K +++ SH
Sbjct: 95 KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154
Query: 131 ERLI 134
Sbjct: 155 LEEA 158
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 68.4 bits (168), Expect = 2e-14
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 7 LQPQQGEL--------KKNHRLRIGRFDQHSGEH----LTAEET-------PAEYLQRLF 47
L+P GE+ K+ RLRIG Q S +T ++ + +RL
Sbjct: 54 LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN 113
Query: 48 NLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
EK + L G+ ++ +LSGGQK RV LA PD+++LDEP +D+
Sbjct: 114 KKDKEKVDEALERVGMEDLRDR-QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 108 ESIDALADAINEYKG---GVIIVSHD 130
+ D + E + V++V+HD
Sbjct: 173 AGQKEIYDLLKELRQEGKTVLMVTHD 198
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 68.1 bits (167), Expect = 3e-14
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHD 130
LSGGQ+ R+A+A + P ++ILDEPT+ LD+ + ++ L + E + +SHD
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201
Query: 131 ERLIRDTECTLWVIENQTIEEI-------DGDFDDYRKELLEA 166
L+ + V++N I EI Y +ELLEA
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRELLEA 244
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 66.3 bits (163), Expect = 4e-14
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A L P ++ILDE T+ LD E+ + +A+ G VI+++H
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156
Query: 133 LIRD 136
IRD
Sbjct: 157 TIRD 160
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 67.3 bits (165), Expect = 4e-14
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 7 LQPQQGELK-KNHRLRIGRFDQHSGEH-----------LTAEETPAEYLQRLFN-LPYEK 53
L+P GE+ + ++ R H LTA E + QR
Sbjct: 52 LRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALEN-LHFWQRFHGSGNAAT 110
Query: 54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL 113
+ L GLAG + + LS GQ+ RVALA L L+ + ILDEP LD E + L
Sbjct: 111 IWEALAQVGLAGLED-LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169
Query: 114 ADAINEY--KGGVIIV-SHDER 132
+ + +GG++++ +H
Sbjct: 170 TALMAAHAAQGGIVLLTTHQPL 191
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 67.2 bits (165), Expect = 4e-14
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI 110
K + L GL+ A ++ +LSGGQ+ RV LA + PD+++LDEP +D ++
Sbjct: 110 KAKVDEALERVGLSELADR-QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ 168
Query: 111 DALADAINEYKG---GVIIVSHD 130
+ + + + E + +++V+HD
Sbjct: 169 EDIYELLRELRREGMTILVVTHD 191
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 67.4 bits (165), Expect = 5e-14
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQ------RLFNLPYEKARKQLGT 60
+ P +G +K+N +LRIG Q T T +L+ + LP K R Q
Sbjct: 54 VAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK-RVQ--- 109
Query: 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN-- 118
AGH M+ LSGG+ RV LA LN P +++LDEPT +D+ AL D I+
Sbjct: 110 ---AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
Query: 119 --EYKGGVIIVSHDERLI 134
E V++VSHD L+
Sbjct: 167 RRELDCAVLMVSHDLHLV 184
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 67.3 bits (165), Expect = 5e-14
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E+ + L GL +LSGGQK RVA+A + P++++LDEPT LD +
Sbjct: 117 ERVAEALELVGLEELLDR-PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 112 ALADAINEYK----GGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY--RKELLE 165
L + + + K +IIV+HD L+ + + V+++ I DGD + ELL
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI-LADGDPAEIFNDAELLL 234
Query: 166 A 166
A
Sbjct: 235 A 235
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 68.4 bits (168), Expect = 6e-14
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ R+ALA L+ +++LDEPT +LD E+ + A+ E V++++H
Sbjct: 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLE 516
Query: 133 LIRDTECTLWVIENQTIEEIDGDFDD 158
D + + V++N + E G ++
Sbjct: 517 DAADADR-IVVLDNGRLVEQ-GTHEE 540
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 66.1 bits (162), Expect = 1e-13
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 11/72 (15%)
Query: 75 LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESID-ALADAINEYKGG---- 123
SGG+K R+ALAE + ++ LDEPT NLD E+I+ +LA+ I E K
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 124 VIIVSHDERLIR 135
+I+++HDE L+
Sbjct: 176 LIVITHDEELVD 187
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 66.0 bits (162), Expect = 2e-13
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 32 HLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGHAHTIKMKD-LSGGQKARVALA 86
HLT E ++ L EKA + L GLA A LSGGQ+ RVA+A
Sbjct: 91 HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD--AYPAQLSGGQQQRVAIA 148
Query: 87 E-LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDERLIRDTECTLW 142
L ++ P V++ DEPT+ LD E + + D + + +IIV+H+ R+ +
Sbjct: 149 RALAMD-PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI 207
Query: 143 VIENQTIEEIDGDFDD 158
++ I E +G ++
Sbjct: 208 FMDQGKIIE-EGPPEE 222
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 67.2 bits (165), Expect = 2e-13
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 18/145 (12%)
Query: 40 AEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMK--DLSGGQKARVALAELTLNAP 93
E L+ +ARK+ L GL LSGG + RV +A P
Sbjct: 115 REALRLHGKGSRAEARKRAVELLEQVGLP-DPERRDRYPHQLSGGMRQRVMIAMALALKP 173
Query: 94 DVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHDERLIRD-TECTLW-----V 143
++I DEPT LD + +D L D E V+ ++HD ++ + + + +
Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
Query: 144 IENQTIEEIDGDF-DDYRKELLEAL 167
+E EEI + Y + LL A+
Sbjct: 234 VETGPTEEILSNPQHPYTRGLLAAV 258
Score = 53.0 bits (128), Expect = 2e-08
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 75 LSGGQKARVALA-ELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
LSGGQ+ RVA+A L L P ++ILDEP + LD + ++ L D E + +SH
Sbjct: 430 LSGGQRQRVAIARALALE-PKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488
Query: 130 DERLIRDTECTLWVIENQTIEE-------IDGDFDDYRKELLEAL 167
D ++R + V+ + I E + Y ++LL A+
Sbjct: 489 DLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAAV 533
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 66.9 bits (164), Expect = 2e-13
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+ALA L+ P +++LDE T+ LD E+ + + + G VII++H
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669
Query: 133 LIRDTE 138
IR +
Sbjct: 670 TIRSAD 675
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 63.4 bits (155), Expect = 1e-12
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 19 RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKM 72
R RIG Q G + T E +Y+ L +P ++ + + L L A K+
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREF-LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-KI 128
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE 108
LSGG + RV +A+ + P ++I+DEPT LD E
Sbjct: 129 GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 63.2 bits (154), Expect = 2e-12
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 32 HLTAEE---TPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAEL 88
+LTA E P E A+ L GL G T LSGG++ RVALA
Sbjct: 102 NLTALENVALPLELRGESSADSRAGAKALLEAVGL-GKRLTHYPAQLSGGEQQRVALARA 160
Query: 89 TLNAPDVIILDEPTNNLDIESIDALAD---AINEYKG-GVIIVSHDERL 133
PDV+ DEPT NLD + D +AD A+N +G +++V+HD +L
Sbjct: 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL 209
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 64.6 bits (158), Expect = 2e-12
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ R+ALA L +++LDEPT +LD E+ + +A+ G V++V+H
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLA 518
Query: 133 LIRD 136
L
Sbjct: 519 LAAL 522
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 62.4 bits (152), Expect = 2e-12
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E+A + L GL H + +LSGG++ RVA+A +N P +++ DEPT NLD +
Sbjct: 120 ERAYEMLEKVGL-EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178
Query: 112 ALADAINE----YKGGVIIVSHDERLIRDTECTLWVIEN 146
+ D + E ++V+HD L + + L +++
Sbjct: 179 IIFDLMLELNRELNTSFLVVTHDLELAKKLDRVL-EMKD 216
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 62.5 bits (153), Expect = 2e-12
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
LSGGQ+ RVA+A P ++I DEPT+ LD+ +D L E ++ ++HD
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205
Query: 131 ERLIR 135
++
Sbjct: 206 LGVVA 210
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 61.8 bits (151), Expect = 3e-12
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTL-NAPDVIILDEPTNNLDIESIDALADA 116
L GLA AH + LS GQK RVALA L + N P + ILDEPT LD ++ A+
Sbjct: 112 LEAVGLAPLAH-LPFGYLSAGQKRRVALARLLVSNRP-IWILDEPTAALDAAAVALFAEL 169
Query: 117 INEY--KGGVIIVS 128
I + +GG++I +
Sbjct: 170 IRAHLAQGGIVIAA 183
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 61.8 bits (151), Expect = 4e-12
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 38 TPAEYLQ---RLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTL 90
T E+L+ RL LP + +++ L GL A+ + + LSGG K +++LA +
Sbjct: 91 TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-RARTLSGGMKRKLSLAIALI 149
Query: 91 NAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
P V++LDEPT+ LD S A+ D I E + G +I+ +H
Sbjct: 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHS 191
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 61.7 bits (151), Expect = 5e-12
Identities = 42/137 (30%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLG 59
D+ R R+G Q + LT E A L+ L E ++L
Sbjct: 63 DISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLE 122
Query: 60 TFGLAGHAHTIKM-KDLSGGQKARVALAE-LTLNAPDVIILDEPTNNLDIESIDALADAI 117
GL G +LSGG K RVALA L L+ P++++ DEPT LD + + D I
Sbjct: 123 AVGLRGAED--LYPAELSGGMKKRVALARALALD-PELLLYDEPTAGLDPIASGVIDDLI 179
Query: 118 N----EYKGGVIIVSHD 130
E I+V+HD
Sbjct: 180 RSLKKELGLTSIMVTHD 196
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 60.6 bits (148), Expect = 6e-12
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
LSGG++ R+A A L L+ P + LDE T+ LD ES D L + E VI V H
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRP--- 148
Query: 135 RDTECTLWVIENQTIEEIDGD 155
+LW ++ + ++DG+
Sbjct: 149 -----SLWKFHDRVL-DLDGE 163
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 60.1 bits (147), Expect = 9e-12
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSH 129
+LSGG++ RV LA P +++LDEPT++LDI E ++ L E V++V H
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156
Query: 130 D 130
D
Sbjct: 157 D 157
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 60.7 bits (148), Expect = 1e-11
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
LSGGQ+ R+ LA N P+V++LDEPT+ LD S + + I E K ++IV+H+
Sbjct: 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 60.4 bits (147), Expect = 1e-11
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 42 YLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVII 97
YL +L L E+AR++ L L+ +A+ ++++LS G + +V ++ P+++I
Sbjct: 93 YLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLI 151
Query: 98 LDEPTNNLDIESIDALADAINEYKGG---VIIVSH 129
LDEP + LD +++ L D I E VI+ +H
Sbjct: 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 60.3 bits (147), Expect = 2e-11
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 35/144 (24%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----I 107
E+A++ L GLAG LSGG + RVA+A P +++LDEP LD
Sbjct: 109 ERAKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167
Query: 108 ESIDALADAINEYKGGVIIVSHD--------ERLIRDTECTLWVIENQ--TIEEI----- 152
E D L E + V++V+HD +R++ V+ N+ I E
Sbjct: 168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV--------VLSNRPGRIGEELEIDL 219
Query: 153 -------DGDFDDYRKELLEALGE 169
D +F + R+ELLE L E
Sbjct: 220 PRPRIRGDPEFLELREELLEELRE 243
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 59.3 bits (144), Expect = 3e-11
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
L GL G LS GQ+ R+ALA L L+ + ILDEPT LD + LA +
Sbjct: 112 LAAVGLTGFEDLP-AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170
Query: 118 NEY---KGGVIIVSHDER 132
+ G V++ +H +
Sbjct: 171 RAHLARGGIVLLTTHQDL 188
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 59.3 bits (144), Expect = 3e-11
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD---AIN 118
GL+ + + LSGG++ RVA+A +N+P ++I DEPT NLD ++ + + IN
Sbjct: 125 GLSHKHRALPAE-LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183
Query: 119 EYKGGVIIVSHDERLIRDTECTLWVIEN 146
+ V++ +H + L+ T + +E
Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIALER 211
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 60.0 bits (146), Expect = 5e-11
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSH 129
LSGGQ+ R+ALA P +++LDEP +NLD E ALA AI K G V++++H
Sbjct: 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 59.7 bits (145), Expect = 6e-11
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 14/161 (8%)
Query: 32 HLTAEETPAEYLQRLFNLPYEKARK-----QLGTFGLAGHAHTIKMKDLSGGQKARVALA 86
H+T + A L+ P E + L L G A LSGGQ+ RVALA
Sbjct: 91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-RYPAQLSGGQRQRVALA 149
Query: 87 ELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHDERLIRDTECTLW 142
P V++LDEP LD E L + + V+HD+ + +
Sbjct: 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVV 209
Query: 143 VIENQTIEEIDGDFDDYRKE----LLEALGEVVNNPSIVAN 179
V+ IE++ + Y + LGEV P V
Sbjct: 210 VLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGEVIL 250
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 58.6 bits (143), Expect = 6e-11
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E+A + L GLA A +LS GQ+ R+ +A P +++LDEP L+ E +
Sbjct: 122 ERAEELLERVGLADLADRP-AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180
Query: 112 ALAD---AINEYKGGVIIVSHDERLIRD 136
LA+ + E V++V HD ++
Sbjct: 181 ELAELIRELRERGITVLLVEHDMDVVMS 208
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 58.3 bits (142), Expect = 6e-11
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDE 131
SGG+K R + +L L PD+ ILDEP + LDI+++ +A+ IN+ + V+I++H +
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 132 RLI 134
RL+
Sbjct: 165 RLL 167
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 58.4 bits (142), Expect = 7e-11
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LSGGQ+ VALA LN P +++LDEPT+ +D+ S + L + + + G +II++H
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITH 197
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 59.5 bits (145), Expect = 7e-11
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 22/102 (21%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-- 130
LSGGQ+ VALA L P +++LDEPT+ +D S + D + + G +++V+H
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661
Query: 131 -----ERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEAL 167
+R+I V++N I DG + ++LEAL
Sbjct: 662 LLDLVDRII--------VMDNGRI-VADGP----KDQVLEAL 690
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 58.4 bits (142), Expect = 7e-11
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAIN 118
GL A + LSGG++ RVA+A +N+P +++ DEPT NLD E I L +N
Sbjct: 126 GLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN 184
Query: 119 EYKGGVIIVSHDERLIR 135
+ VI+ +HD L+
Sbjct: 185 KRGTTVIVATHDLSLVD 201
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 59.4 bits (144), Expect = 8e-11
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A L P ++ILDE T+ LD E+ + DA+ + G +I++H
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 133 LIRDTECTLWVIENQTIEEID 153
I++ + + V++N I E
Sbjct: 526 TIKNAD-RIIVLDNGRIVERG 545
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 58.7 bits (143), Expect = 8e-11
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI--- 107
E + L GL A + +LSGG++ RV +A +++LDEPT++LDI
Sbjct: 116 EEIVEEALELLGLEHLADRP-VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 108 -ESIDALADAINEYKGGVIIVSHD 130
E ++ L D E V++V HD
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHD 198
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 58.1 bits (141), Expect = 1e-10
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 19 RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQLG-TFGLAGHAHTI--KMK 73
R R+G +G + LTA E EY L+ L ++ +L G + ++
Sbjct: 77 RRRLGFVSDSTGLYDRLTAREN-LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVS 128
S G + +VA+A ++ P V++LDEPT LD+ + AL + I + + G I+ S
Sbjct: 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 58.0 bits (141), Expect = 1e-10
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 43 LQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIIL 98
+ LF L ++ + Q L G+ A+ + LSGGQ+ RVA+A + P +I+
Sbjct: 113 WRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILA 171
Query: 99 DEPTNNLDIES----IDALADAINEYKGG-VIIVSHD 130
DEP +LD ES +D L D IN+ G VI+ H
Sbjct: 172 DEPVASLDPESAKKVMDILKD-INQEDGITVIVNLHQ 207
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 59.0 bits (143), Expect = 1e-10
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 32 HLTAE---ETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAEL 88
HLTA E PA Y +A++ L GL + LSGGQ+ RV++A
Sbjct: 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-YQPSQLSGGQQQRVSIARA 158
Query: 89 TLNAPDVIILDEPTNNLDIES---IDALADAINEYKGGVIIVSHD-------ERL--IRD 136
+N VI+ DEPT LD S + A+ + + VIIV+HD ER+ IRD
Sbjct: 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRD 218
Query: 137 TE 138
E
Sbjct: 219 GE 220
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 58.9 bits (143), Expect = 1e-10
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVS--HDER 132
LSGG++ R+A A L L+ P + LDE T+ LD E+ D L + E ++S H
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT 575
Query: 133 LIR 135
L
Sbjct: 576 LWN 578
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 56.8 bits (138), Expect = 1e-10
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDE 131
LSGGQ+ R+ LA P +++LDEP ++LD+E AL AI K I+++H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 132 RLIR 135
+
Sbjct: 157 ETLA 160
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 58.9 bits (143), Expect = 1e-10
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHDE 131
LSGGQ+ R+ALA P +++LDEP +NLD E ALA+AI K V++++H
Sbjct: 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP 514
Query: 132 RLI 134
L+
Sbjct: 515 SLL 517
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 56.8 bits (138), Expect = 1e-10
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIE---SIDALADAINEYKG-GVIIVSHD 130
LSGGQ+ RVALA PDV++LDEPT+ LD + AL ++ G V++V+HD
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 58.2 bits (141), Expect = 2e-10
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE-YKGG--VIIVSHD 130
+LSGGQK RVALA + PD ++ DEPT LD + + + + + K G +I+V+HD
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
Query: 131 -ERLIRDTECTLWVIENQTIEEIDGD 155
+ ++ T+ T++ + + I+ DGD
Sbjct: 225 LDNVLEWTKRTIFFKDGKIIK--DGD 248
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 57.2 bits (139), Expect = 2e-10
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE--- 108
+ + L GL A + LSGG++ RVA+A +N P V++ DEPT NLD +
Sbjct: 116 RRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174
Query: 109 SIDALADAINEYKGGVIIVSHDERLIRD 136
I L + IN V++ +HD L+
Sbjct: 175 EIMRLFEEINRLGTTVLMATHDLELVNR 202
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 57.6 bits (140), Expect = 2e-10
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 75 LSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVIIVS 128
LSGGQ+ R+ +A L LN P +I+ DEP + LD+ S+ A L D E + +S
Sbjct: 110 LSGGQRQRIGIARALALN-PKLIVADEPVSALDV-SVQAQILNLLKDLQEELGLTYLFIS 167
Query: 129 HDERLIRDTECTLWVIENQTIEEIDGDFDD--------YRKELLEA 166
HD ++R + V+ I EI G ++ Y K LL A
Sbjct: 168 HDLSVVRYISDRIAVMYLGKIVEI-GPTEEVFSNPLHPYTKALLSA 212
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 56.8 bits (138), Expect = 3e-10
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDE 131
SGG+K R + +L L P + ILDEP + LDI+++ +A+ IN + GV+I++H +
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204
Query: 132 RL 133
RL
Sbjct: 205 RL 206
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 56.7 bits (138), Expect = 3e-10
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 52 EKARKQLGTFGLAGHAHTIKM-KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI--- 107
E+A + L GL+G + LSGG + RVALA PDV++LDEP + LD
Sbjct: 110 ERAEELLELVGLSGFEN--AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167
Query: 108 ESI-DALADAINEYKGGVIIVSHD 130
E + + L D E V++V+HD
Sbjct: 168 EQLQEELLDIWRETGKTVLLVTHD 191
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 56.2 bits (136), Expect = 4e-10
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 19 RLRIGRFDQHSG--EHLTAEET---PAEYLQRLFNL-PYEKARKQLGTFGLAGHAHTIKM 72
R IG Q LTA + E L E+AR L GL H
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-YP 139
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVS 128
+LSGGQK RVA+A ++ P +++ DEPT LD +S ++ + E ++IV+
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199
Query: 129 HDERL 133
HD R+
Sbjct: 200 HDNRI 204
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 56.7 bits (137), Expect = 4e-10
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE--- 108
+AR+ L GLAG + + LSGGQ+ RVA+A P+VI+ DEPT+ LD E
Sbjct: 123 ARARELLAKVGLAGKETSYP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181
Query: 109 ----SIDALADAINEYKGGVIIVSHDERLIRD 136
+I LA + K ++IV+H+ RD
Sbjct: 182 EVLNTIRQLA----QEKRTMVIVTHEMSFARD 209
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 56.4 bits (136), Expect = 5e-10
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---E 108
+A + L GL A+ + +LSGG++ RVA+A +N P +++ DEPT NLD +
Sbjct: 124 SRALEMLAAVGLEHRANH-RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
Query: 109 SIDALADAINEYKG-GVIIVSHD----ERLIRDTE 138
SI L +N +G ++V+HD +R+ R E
Sbjct: 183 SIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLE 217
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 56.4 bits (136), Expect = 6e-10
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 25 FDQ-HSGEHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQ 79
F Q + HLT +E E R+ L ++A + L L +A + LSGGQ
Sbjct: 88 FQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH-LSGGQ 146
Query: 80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI---IVSHDERLIRD 136
+ RVA+A + P V++ DEPT LD E + I E I IV+H+ + R
Sbjct: 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARK 206
Query: 137 TECTLWVIENQTIEE 151
T + +EN I E
Sbjct: 207 TASRVVYMENGHIVE 221
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 55.7 bits (135), Expect = 6e-10
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD---AINEYKGGVIIV 127
K+ +LSGG++ RVALA L P +I+ DEPT +LD ++ D + D +N+ +IIV
Sbjct: 131 KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIV 190
Query: 128 SHD 130
+HD
Sbjct: 191 THD 193
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 56.2 bits (136), Expect = 8e-10
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 12 GELKKNHRLRIGRFDQHSGEH--LTAEETPAEYLQRLFNLPYEKARKQLGT----FGLAG 65
G L + + RIG + G + +T E+ YL L +P + +K+L + G
Sbjct: 64 GPLSQEIKNRIGYLPEERGLYPKMTVEDQLK-YLAELKGMPKAEIQKKLQAWLERLEIVG 122
Query: 66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GG 123
K+K+LS G + ++ ++ P+++ILDEP + LD +++ L DAI E K G
Sbjct: 123 KKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181
Query: 124 VIIVS-----HDERL 133
II S H E L
Sbjct: 182 TIIFSSHRMEHVEEL 196
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 56.0 bits (136), Expect = 8e-10
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
LSGG + RV +A P ++I DEPT LD+ +D L + E +I+++HD
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213
Query: 131 ERLIR---DTECTL---WVIENQTIEEIDGDFDD----YRKELLEAL 167
++ D + ++E +EEI F + Y + LL +L
Sbjct: 214 LGVVAEIADRVAVMYAGRIVEEGPVEEI---FKNPKHPYTRGLLNSL 257
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 54.7 bits (132), Expect = 1e-09
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---IE 108
+ R+ L G +G LSGG+K RVA+A PDV++LDEPT LD E
Sbjct: 106 RRVREALTAVGASGLRER-PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164
Query: 109 SIDALADAINEYKGGVIIVSHDERLI 134
+ A+ + V+I +HD L
Sbjct: 165 QMLAILRRLRAEGMTVVISTHDVDLA 190
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 55.0 bits (133), Expect = 1e-09
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 31 EHLTAEETPAEYLQRLFNLPYEKARKQL----GTFGLAGHAHTI----KMKDLSGGQKAR 82
LT ET LP + + L A T +K +SGG++ R
Sbjct: 94 PGLTVRETLTYTAI--LRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRR 151
Query: 83 VALAELTLNAPDVIILDEPTNNLD 106
V++A L P V+ILDEPT+ LD
Sbjct: 152 VSIAVQLLWDPKVLILDEPTSGLD 175
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 54.8 bits (133), Expect = 1e-09
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 32 HLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
HLT E ++ + E+A + L GLA A LSGGQ+ RVA+A
Sbjct: 90 HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-YPAQLSGGQQQRVAIAR 148
Query: 88 -LTLNAPDVIILDEPTNNLDIESIDALADAINEY-KGG--VIIVSHDERLIRD 136
L +N P V++ DEPT+ LD E + + D + + + G +++V+H+ R+
Sbjct: 149 ALAMN-PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 54.9 bits (133), Expect = 1e-09
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A L P +++LDE T+ LD ES + +A++ G I+++H R
Sbjct: 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH--R 197
Query: 133 L--IRDTECTLWVIENQTIEEIDGDFDD 158
L IR+ + V++N + E G D+
Sbjct: 198 LSTIRNADLIA-VLQNGQVVEQ-GTHDE 223
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 54.5 bits (132), Expect = 2e-09
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A L P ++ILDE T+ LD ES + A+ +++H
Sbjct: 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLS 198
Query: 133 LIRDTECTLWVIENQTIEEI 152
I + + + V+E+ I E
Sbjct: 199 TIENADRIV-VLEDGKIVER 217
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 54.6 bits (132), Expect = 2e-09
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES- 109
E+A L GLA A+ + LSGGQ+ RVA+A PD+I+ DEP +LD ++
Sbjct: 123 KERALSALERVGLADKAYQ-RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 110 ---IDALADAINEYKGGVIIVS 128
+D L IN+ G +I++
Sbjct: 182 KQVMDYLKR-INKEDGITVIIN 202
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 55.2 bits (134), Expect = 2e-09
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIES 109
+AR+ L GL T + DLS Q+ V +A L+ +A V+ILDEPT L ++
Sbjct: 123 RRRARELLARLGLDIDPDT-LVGDLSIAQRQMVEIARALSFDA-RVLILDEPTAALTVKE 180
Query: 110 IDALADAINEYKG---GVIIVSH 129
+ L D I K +I +SH
Sbjct: 181 TERLFDLIRRLKAQGVAIIYISH 203
Score = 42.9 bits (102), Expect = 4e-05
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGG--QKARVALAELTLNAPDVIILDEPTNNLDIES 109
A + + + + + LSGG QK V LA P V+ILDEPT +D+ +
Sbjct: 379 ALAERYIRRLRIKTPSPEQPIGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGA 436
Query: 110 IDALADAINEY--KG-GVIIVS 128
+ I E +G ++++S
Sbjct: 437 KAEIYRLIRELAAEGKAILMIS 458
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 54.0 bits (131), Expect = 3e-09
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 33 LTAEETPAEYLQRLFNLPYEKARKQ-LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLN 91
LTA E + QRL ++A + L GLAG + ++ LS GQ+ RVALA L L
Sbjct: 89 LTALENLR-FYQRLHGPGDDEALWEALAQVGLAGFED-VPVRQLSAGQQRRVALARLWLT 146
Query: 92 APDVIILDEPTNNLDIESIDALADAINEY--KGG-VIIVSH 129
+ ILDEP +D + + L + ++ +GG VI+ +H
Sbjct: 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 54.7 bits (132), Expect = 3e-09
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSH 129
+LSGGQK RVA+A + P ++ILDEPT LD + D + + I EY +I+VSH
Sbjct: 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 54.1 bits (131), Expect = 3e-09
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 43 LQRLFNLPYE----KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIIL 98
+ LF L + +A L GL A+ + LSGGQ+ RVA+A + P +I+
Sbjct: 110 WRSLFGLFPKEEKQRALAALERVGLLDKAYQ-RADQLSGGQQQRVAIARALMQQPKLILA 168
Query: 99 DEPTNNLDIES----IDALADAINEYKGGVIIVS-HDERLIR 135
DEP +LD S +D L IN +G +IVS H L R
Sbjct: 169 DEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQVDLAR 209
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 53.8 bits (130), Expect = 4e-09
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
+ + L GLA A K+++L+GG + RV +A L+ P +++LDEPT LD S
Sbjct: 111 ARIAELLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRA 169
Query: 112 ALADAINEYKGGVIIVSHDERLIRDTE-CTLW 142
A I +H L RD LW
Sbjct: 170 A-------------ITAHVRALARDQGLSVLW 188
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 54.2 bits (131), Expect = 5e-09
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----I 107
+ + L GL G A K LSGGQ+ RVALA + P V++LDEP + LD
Sbjct: 115 ARVEEALELVGLEGFADR-KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 108 ESIDALADAINEYKGGVIIVSHD 130
+ L + E + V+HD
Sbjct: 174 QMRKELKELQRELGITFVYVTHD 196
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 53.2 bits (128), Expect = 6e-09
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
A+ L GL + + LSGG++ RVALA PDV+ DEPT NLD ++ D
Sbjct: 125 NGAKALLEQLGLGKRLDHLPAQ-LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183
Query: 112 ALADAI----NEYKGGVIIVSHDERLIRDTECTLWVIENQTIEE 151
+AD + E+ +I+V+HD +L + L ++ Q EE
Sbjct: 184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 53.5 bits (129), Expect = 6e-09
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 32 HLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
HLT ++ E R+ L ++A + L L +A + LSGGQ+ RVA+A
Sbjct: 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH-LSGGQQQRVAIAR 154
Query: 88 LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI---IVSHDERLIRDTECTLWVI 144
+ P V++ DEPT LD E + I E I IV+H+ + R T + +
Sbjct: 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214
Query: 145 ENQTIEE 151
EN I E
Sbjct: 215 ENGHIVE 221
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 53.9 bits (130), Expect = 6e-09
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 32 HLTAEETPAEYLQRLFNLP---YEKARKQ-----LGTFGLAGHAHTI-----KMKDLSGG 78
LT E Q +P +K +++ L GL A+T ++K LSGG
Sbjct: 113 TLTVREH--LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGG 170
Query: 79 QKARVALAELTLNAPDVIILDEPTNNLD 106
++ R+A A L P ++ DEPT+ LD
Sbjct: 171 ERKRLAFASELLTDPPLLFCDEPTSGLD 198
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 53.9 bits (130), Expect = 7e-09
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 23/143 (16%)
Query: 7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYL---QRLF-------NLPYEKARK 56
+P +G ++ N R+ D G L E+ Y+ RLF NL Y +
Sbjct: 48 TRPDEGRIELNGRVL---VDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104
Query: 57 QLGTFG----LAGHAHTIKMK--DLSGGQKARVALAELTLNAPDVIILDEPTNNLDI--- 107
F L G H + LSGG+K RVA+ L AP+++++DEP +LD+
Sbjct: 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164
Query: 108 -ESIDALADAINEYKGGVIIVSH 129
E + L +E ++ VSH
Sbjct: 165 REILPYLERLRDEINIPILYVSH 187
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 53.9 bits (130), Expect = 7e-09
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGG++ R+ALA L+ + +LDEPT LD + + + E+ G +++V+H R
Sbjct: 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLR 534
Query: 133 LIRDTECTLWVIENQTIEE 151
+ + + + + IEE
Sbjct: 535 GLERMDRIIVLDNGKIIEE 553
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 53.0 bits (128), Expect = 8e-09
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LSGG+K RVA+A L P +++LDE T+ LD + + A+ + G I+++H
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAH 194
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 53.0 bits (128), Expect = 9e-09
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 18 HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIK 71
R R+G Q LT E A L+ LP R+ L GL G A +
Sbjct: 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY 142
Query: 72 MKDLSGGQKARVALAE-LTLNAPDVIILDEPTNNLD-IES--IDALADAINEYKGG-VII 126
+LSGG + RVALA + L+ P+++ LDEPT+ LD I + ID L +N+ G VI+
Sbjct: 143 PSELSGGMRKRVALARAIALD-PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM 201
Query: 127 VSHDERLIRDTECTLWVIENQTI 149
V+HD + + V+ + +
Sbjct: 202 VTHDLDSLLTIADRVAVLADGKV 224
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 52.5 bits (126), Expect = 9e-09
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
L GL G + LS GQ+ RVALA L L+ + ILDEPT LD + A+A+
Sbjct: 110 LARVGLNGFED-RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
Query: 118 NEY--KGGVIIVS 128
+ +GG+++++
Sbjct: 169 AGHCARGGMVVLT 181
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 53.5 bits (129), Expect = 9e-09
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 32 HLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
H T E + + +P E+A + L GL G+A +LSGG + RV LA
Sbjct: 120 HRTVLEN-VAFGLEVQGVPKAEREERALEALELVGLEGYADK-YPNELSGGMQQRVGLAR 177
Query: 88 LTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
N PD++++DE + LD E D L + + K ++ ++HD
Sbjct: 178 ALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD 224
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 53.4 bits (129), Expect = 1e-08
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
LSGGQ+ RV +A N PD++I DEPT LD + +D L + E ++ ++HD
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217
Query: 131 ERLIR---DTECTLW---VIENQTIEEIDGDF----DDYRKELLEA 166
++R D + ++E T E + F Y ++LL A
Sbjct: 218 LGIVRKFADRVYVMQHGEIVETGTTETL---FAAPQHPYTRKLLAA 260
Score = 46.5 bits (111), Expect = 2e-06
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHDE 131
SGGQ+ R+A+A + P++I+LDEPT+ LD + +D L D ++ + +SHD
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487
Query: 132 RLIR 135
++R
Sbjct: 488 AVVR 491
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 51.8 bits (125), Expect = 2e-08
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 32 HLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
HLT E A + +L +P + R + L GL G + +LSGGQ+ RVALA
Sbjct: 86 HLTVAENIA-FGLKLRGVPKAEIRARVRELLELVGLEGLLNR-YPHELSGGQQQRVALAR 143
Query: 88 LTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
P +++LDEP + LD + + L + E I V+HD
Sbjct: 144 ALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 51.2 bits (123), Expect = 2e-08
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 75 LSGGQKARVALA----ELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIV 127
LSGG+K ALA +L + ILDE LD ALA+AI E+ VI++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 128 SHDERLI 134
+H L
Sbjct: 138 THLPELA 144
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 52.0 bits (125), Expect = 2e-08
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 32 HLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI--KMKDLSGGQKARVALAELT 89
H+T + A L++ E RK L + G H + K + LSGG++ RVA+A
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL 144
Query: 90 LNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
+ P +++LDEP + LD+ + + L E+ V+ V+HD
Sbjct: 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 52.1 bits (125), Expect = 2e-08
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHD 130
LSGG+K RVA+A + P V++LDEPT LD + + L D +N Y VI +H
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
Query: 131 ERLIRDTECTLWVIEN------QTIEEI 152
L+ + ++V++ T+EEI
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYGTVEEI 225
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 51.8 bits (124), Expect = 2e-08
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
L GLAG+ T+ ++ LS GQK R+ALA L L+ + +LDEP NLD+E I + I
Sbjct: 122 LAIVGLAGYEDTL-VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
Query: 118 NEY---KGGVIIVSH 129
+ + G ++ +H
Sbjct: 181 SAHLRGGGAALVTTH 195
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 51.9 bits (125), Expect = 3e-08
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE---SIDALADAIN 118
GL+ A LSGGQK RVA+A N P +++ DE T+ LD E SI L IN
Sbjct: 130 GLSDKADR-YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN 188
Query: 119 EYKG-GVIIVSHDERLIRD------TECTLWVIENQTIEEID 153
G +++++H+ +++ ++E T+ E+
Sbjct: 189 RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 51.5 bits (124), Expect = 3e-08
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---- 106
E+A + L GL G H +LSGG + RV LA PD++++DE + LD
Sbjct: 138 EERAAEALELVGLEGWEHK-YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196
Query: 107 IESIDALADAINEYKGGVIIVSHD 130
E D L E + ++ ++HD
Sbjct: 197 REMQDELLRLQAELQKTIVFITHD 220
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 51.4 bits (124), Expect = 3e-08
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LSGGQ+ R+ +A P+V+++DEPT+ LD S + + I E K ++IV+H
Sbjct: 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 51.1 bits (123), Expect = 3e-08
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDER 132
SGG+K R + ++ L P + ILDE + LDI+++ +A+ IN + +I++H +R
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205
Query: 133 LIR 135
L+
Sbjct: 206 LLN 208
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 51.0 bits (123), Expect = 4e-08
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA-PDVIILDEPTNNLDIESI 110
E+AR+ L GL A +LS GQ+ R+ +A L P +++LDEP L+ E
Sbjct: 128 ERARELLEFVGLGELADRP-AGNLSYGQQRRLEIA-RALATQPKLLLLDEPAAGLNPEET 185
Query: 111 DALADAI----NEYKGGVIIVSHDERLIRD 136
+ LA+ I + ++++ HD +L+
Sbjct: 186 EELAELIRELRDRGGVTILLIEHDMKLVMG 215
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 51.7 bits (124), Expect = 4e-08
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 49 LPYEKA-RKQLGTFGLAG----HAHTI--KMKD-LSGGQKARVALAELTLNAPDVIILDE 100
LP E A K + T + G A I K D LS G++ RVALA++ + P ++ILDE
Sbjct: 394 LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE 453
Query: 101 PTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRD 136
PT +D + + +I E + IIVSHD + D
Sbjct: 454 PTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLD 493
Score = 51.0 bits (122), Expect = 8e-08
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI----DALADAINEY 120
H T +DLSGG+K RV LA P + + DEPT LD ++ +AL +A+
Sbjct: 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS 218
Query: 121 KGGVIIVSHDERLIRD-TECTLWVIENQTIEEIDGDFDDYRKELLEALGEV 170
+++ SH +I D ++ +W +EN I+E G D+ +E + EV
Sbjct: 219 GISMVLTSHWPEVIEDLSDKAIW-LENGEIKEE-GTPDEVVAVFMEGVSEV 267
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 50.4 bits (121), Expect = 5e-08
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHD 130
LSGG+K RVALA P++++LDEP + LD L + + VI V+HD
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 131 -ERLIRDTECTLWVIENQTI 149
+ + + + +
Sbjct: 192 LSEAEYLADRIVVMEDGRLQ 211
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 51.0 bits (123), Expect = 5e-08
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 8 QPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYL---QRLF-------NLPYEKARKQ 57
+PQ+G + N R+ FD G L E+ Y+ RLF NL Y A+
Sbjct: 49 RPQKGRIVLNGRVL---FDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSM 105
Query: 58 LGTF----GLAGHAHTIKM--KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
+ F L G + LSGG+K RVA+ L AP+++++DEP +LD+
Sbjct: 106 VAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 51.4 bits (124), Expect = 5e-08
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LS GQ R+ALA L +++LDEPT +LD S + A+N ++V+H
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH--- 542
Query: 133 LIRDTEC--TLWVIENQTIEEIDGDFDD 158
+ D +WV+++ I + GD+ +
Sbjct: 543 QLEDLAQWDQIWVMQDGQIVQ-QGDYAE 569
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 50.9 bits (122), Expect = 6e-08
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 19 RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKM 72
R IG Q++ E LT E E + RL+ LP ++A ++ L F L G A +
Sbjct: 65 RRSIGIVPQYASVDEDLTGREN-LEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRPV 122
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSH 129
SGG + R+ +A ++ PDV+ LDEPT LD + A+ D I K +++ +H
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
Query: 130 D 130
Sbjct: 183 Y 183
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 51.2 bits (122), Expect = 6e-08
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG----VIIVSHD 130
LSGGQK R+++A + P ++ILDE T++LD +S + IN KG II++H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 131 ERLIRDTECTLWVI---ENQTIEEIDGDFDDYRKELLE 165
IR T++V+ E + ++D +D K+ E
Sbjct: 640 LSTIRYAN-TIFVLSNRERGSTVDVDIIGEDPTKDNKE 676
Score = 43.9 bits (103), Expect = 2e-05
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
K LSGGQK R+A+A L P +++LDE T++LD S
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 50.8 bits (122), Expect = 6e-08
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
LSGG++ R+ALA L +++LDEPT +LD E+ D L + + G V++++H
Sbjct: 472 LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 50.2 bits (120), Expect = 8e-08
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
L GL T +K+LSGG+ RV++A N P+V++LDEPT+ LD S + + + I
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 118 ----NEYKGGVIIVSHD-ERLIRDTECTLWVIENQTIE 150
N+ VI ++H+ E+ R + T ++ + +E
Sbjct: 175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 50.1 bits (120), Expect = 9e-08
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG----VIIVSHD 130
LSGGQK RVA+A + P VIILDE T+ LD ++ L D + + K +I ++HD
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 49.9 bits (120), Expect = 1e-07
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE-- 108
E+ + L GL A LSGGQK RV +A N P V++ DE T+ LD E
Sbjct: 118 EERVLELLELVGLEDKAD-AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 109 -SIDALADAINEYKG-GVIIVSHDERLIRDTECTLWVIENQTIEE 151
SI AL IN G +++++H+ +++ + V+E + E
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 49.7 bits (119), Expect = 1e-07
Identities = 43/136 (31%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 7 LQPQQGELKKNHRLRIGRFDQHS----------GEHLTAEETPAEYLQRLFNLPYEKARK 56
L+P GE+ + R D H E+LTA E + L LP + +
Sbjct: 50 LRPTSGEIIFDGH-PWTRKDLHKIGSLIESPPLYENLTAREN-LKVHTTLLGLPDSRIDE 107
Query: 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA 116
L L + K K S G K R+ +A LN P ++ILDEPTN LD I L +
Sbjct: 108 VLNIVDL-TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELREL 166
Query: 117 INEYKG---GVIIVSH 129
I + VI+ SH
Sbjct: 167 IRSFPEQGITVILSSH 182
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 49.5 bits (119), Expect = 1e-07
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
E+ + L L G+A+ K LSGGQ+ RVA+A +N P V++LDEP LD
Sbjct: 109 ERVAEALDLVQLEGYANR-KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 49.4 bits (118), Expect = 1e-07
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-NEY 120
GL G H LSGGQ+ARVAL L P ++LDEP + LD+ D + +E
Sbjct: 123 GLDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181
Query: 121 KGG---VIIVSHDERLIRDTECTLWVIENQTIEE 151
+ + V+HD ++D VIE E+
Sbjct: 182 RAAGIPTVQVTHD---LQDVPAGSRVIEMAQWEQ 212
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 49.7 bits (119), Expect = 1e-07
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKGGVIIVSHDE 131
LSGGQK RVA+A + P++I+LDEPT+ LD I L +N+ +II +HD
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV 197
Query: 132 RLI 134
L+
Sbjct: 198 DLV 200
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 50.1 bits (120), Expect = 1e-07
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 75 LSGGQKARVALAE-------LTLNAP-DVIILDEPTNNLDIESIDALADAINEYKGG--- 123
LSGG++ +LA L A +++ LDEP LD E ++ LA+ + E
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875
Query: 124 VIIVSHDERLI 134
+II+SH E L
Sbjct: 876 IIIISHVEELK 886
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 48.7 bits (117), Expect = 2e-07
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD-------IESIDALADAINEYKGG 123
K++ LSGG++ RV++A ++ P ++ LDEPT+ LD + + LAD G
Sbjct: 108 KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-----GR 162
Query: 124 VIIVS 128
II S
Sbjct: 163 TIICS 167
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 49.3 bits (118), Expect = 2e-07
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----I 107
+ A + L GLA A+ LSGGQK RVALA ++ P +++LDEP LD I
Sbjct: 112 DAALQALAAVGLADRANEWPAA-LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170
Query: 108 ESIDALADAINEYKGGVIIVSHD 130
E D + ++ V++V+HD
Sbjct: 171 EMQDLIESLWQQHGFTVLLVTHD 193
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 49.2 bits (118), Expect = 2e-07
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
LSGGQK RVA+A + PD+IILDE T+ LD E ++ + + V+ ++HD
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 49.1 bits (117), Expect = 2e-07
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
EKA K L GL+ + +LSGGQ RVA+A + P+++ LDEP LD E
Sbjct: 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182
Query: 112 ALADAINEY-KGG--VIIVSHD 130
+ +Y K G VI+V+H+
Sbjct: 183 EMMQLFKDYQKAGHTVILVTHN 204
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 47.8 bits (115), Expect = 2e-07
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSH 129
LS G++ V +A ++ILDEPT L ++ L I + VI +SH
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 49.0 bits (117), Expect = 4e-07
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
LSGGQK R+A+A + P V+ILDE T+ LD E L ++ + V++++H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV 677
Query: 135 RDTECTLWVIENQTIE 150
+ L + + +E
Sbjct: 678 ERADQILVLKKGSVVE 693
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 48.9 bits (117), Expect = 4e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 75 LSGGQKARVALAELTL-NAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
LSGGQ+ R+A+A L ++P ++ILDE T+ LD ES A+ A++E + ++++H
Sbjct: 481 LSGGQRQRIAIARALLRDSP-ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539
Query: 132 RLIRDTECTLWVIENQTIEE 151
I + L V+E+ I E
Sbjct: 540 STIEKADEIL-VVEDGEIVE 558
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 48.1 bits (115), Expect = 4e-07
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 23/145 (15%)
Query: 7 LQPQQGEL----------KKNHRLRIGR-FDQHSGEHLTAEETPAE---YLQRLFNLPYE 52
LQP GE+ +K RIG F Q + L + + L +++LP
Sbjct: 71 LQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT--QLWWDLPVIDSFYLLAAIYDLPPA 128
Query: 53 KARKQLGTFGLA---GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
+ +K+L ++ LS GQ+ R +A L+ P+++ LDEPT LD+ +
Sbjct: 129 RFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188
Query: 110 IDA----LADAINEYKGGVIIVSHD 130
+ L + E V++ SH
Sbjct: 189 QENIRNFLKEYNRERGTTVLLTSHY 213
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 48.2 bits (115), Expect = 4e-07
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
LSGGQK RVA+A P +IILDE T+ LD +E I + ++Y+ VI ++HD
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 48.3 bits (115), Expect = 4e-07
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 19 RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPYEKARKQLGT---FGLAGHAHTIKM 72
R R+G Q ++L + T E L R F L AR + F + K+
Sbjct: 79 RQRVGVVPQF--DNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV 136
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
+LSGG K R+ LA +N PDV++LDEPT LD
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 48.4 bits (115), Expect = 4e-07
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
LSGGQ+ R+ +A P++++LDEPT+ LD ++ + D I E +G ++IV+H+ +
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242
Query: 132 RLIRDTECTLWVIENQTIE 150
+ R ++ T++ E +E
Sbjct: 243 QASRVSDYTMFFYEGVLVE 261
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 47.8 bits (114), Expect = 5e-07
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 33 LTAEETPAEYLQRLFNLPYEKARKQLG----TFGLAGHAHTIKMKDLSGGQKARVALAEL 88
LTA E Y RL L ++ + ++ L + + S G K +VA+A
Sbjct: 90 LTARENLK-YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE-FSTGMKQKVAIARA 147
Query: 89 TLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHD 130
++ P +++LDEPT+ LDI + D I + K VI SH
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 48.3 bits (115), Expect = 5e-07
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 75 LSGGQKARVALAELTL-NAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
LSGG++ R+A+A L NAP +++LDE T+ LD+E+ + +AI+ + I++H
Sbjct: 472 LSGGERQRLAIARAILKNAP-ILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRL 530
Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKE------LLEALGEVVNNP 174
+R+ + L++ + + IE+ G F + ++ LL G + N P
Sbjct: 531 STVRNADLVLFLDQGRLIEK--GSFQELIQKDGRFYKLLRRSGLLTNQP 577
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 46.9 bits (112), Expect = 6e-07
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 71 KMKDLSGGQKARVALA-ELTLNA-PDVIILDEPTNNLDIESIDALADAINEY---KGGVI 125
K+ LSGG+ RV LA EL + ILDEP+ L + I+ L + I VI
Sbjct: 84 KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVI 143
Query: 126 IVSHDERLIRDTECTLWVIE 145
++ H+ ++ + W+I+
Sbjct: 144 LIEHNLDVLSSAD---WIID 160
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 47.7 bits (114), Expect = 6e-07
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LSGGQ+ R+ +A P+V++LDEPT+ LD + + + I E K ++IV+H
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 47.5 bits (113), Expect = 6e-07
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129
LSGGQK RVA+A + P V+ILDE T+ LD ES + A+ ++ + V++++H
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 48.2 bits (115), Expect = 7e-07
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LSGGQ+ R+A+A + P ++I DE T+ LD ES + + E G VII++H
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAH 650
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 47.9 bits (114), Expect = 7e-07
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 13 ELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGH 66
EL++ R +IG Q H+T + L P EKA + L GL +
Sbjct: 64 ELREVRRKKIGMVFQQFALFPHMTILQN-TSLGPELLGWPEQERKEKALELLKLVGLEEY 122
Query: 67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV-- 124
H +LSGG + RV LA PD++++DE + LD D++ D + + + +
Sbjct: 123 EHRYP-DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 125 --IIVSHD 130
+ ++HD
Sbjct: 182 TIVFITHD 189
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 47.7 bits (114), Expect = 7e-07
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 76 SGGQKARVALAE-LTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVIIVSH 129
SGGQ+ R+A+A L L+ PDV++ DEP + LD+ S+ A + D E + +SH
Sbjct: 156 SGGQRQRIAIARALMLD-PDVVVADEPVSALDV-SVQAQVLNLMMDLQQELGLSYVFISH 213
Query: 130 D 130
D
Sbjct: 214 D 214
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 47.2 bits (112), Expect = 7e-07
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKGGVIIVSHDE 131
LSGG++ RV +A +N P V++ DEPT NLD E I L + N V++ +HD
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197
Query: 132 RLI 134
LI
Sbjct: 198 GLI 200
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 47.3 bits (112), Expect = 8e-07
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 19 RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR----KQLGTFGLAGHAHTIKM 72
R R+ QH H+T E E ++ L ++AR K L G+ A
Sbjct: 91 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP 150
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA---LADAINEYKGGVIIVSH 129
LSGGQ+ RV++A P+V++ DEPT+ LD E + + + E +++V+H
Sbjct: 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
Query: 130 DERLIRDTECTLWVIENQTIEE 151
+ R + + IEE
Sbjct: 211 EMGFARHVSSHVIFLHQGKIEE 232
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 47.4 bits (113), Expect = 8e-07
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGGQ+ R+ +A PDV+++DEP + LD S A+ D INE K ++IV+H+
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHN 206
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 47.3 bits (112), Expect = 8e-07
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES-- 109
++A + L G+ AH ++ LSGGQ+ RVA+A + VI+ DEP +LD ES
Sbjct: 131 QRALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESAR 189
Query: 110 --IDALADAINEYKGGVIIVS 128
+D L D IN+ G ++V+
Sbjct: 190 IVMDTLRD-INQNDGITVVVT 209
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 47.7 bits (114), Expect = 9e-07
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGG+K RVA+A L P ++ILDE T+ LD + A+ A+ E G ++++H
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459
Query: 133 LIRDTECTLWVIENQTIEE 151
I D + + V++N I E
Sbjct: 460 TIIDADEII-VLDNGRIVE 477
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 47.0 bits (112), Expect = 9e-07
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
E+A K L G+A A LSGGQ+ RVA+A P+V++ DEPT+ LD E +
Sbjct: 131 ERAEKYLAKVGIAEKADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVG 189
Query: 112 ALADAIN---EYKGGVIIVSHDERLIRDTECTLWVIENQTIEE 151
+ + E +++V+H+ RD + + IEE
Sbjct: 190 EVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 47.3 bits (113), Expect = 1e-06
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVS 128
LSGGQ+ RVALA + P V +LDEP +NLD + + I I V+
Sbjct: 132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVT 191
Query: 129 HD--ERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161
HD E + + V+ + I+++ + Y +
Sbjct: 192 HDQVEAMTLAD--RIVVMNDGRIQQVGTPLELYER 224
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 47.1 bits (112), Expect = 1e-06
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 32 HLTAEETPAEYLQRLFNLPYE----KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
H+T EE A + ++ +P + + L L A K LSGGQ+ RVALA
Sbjct: 56 HMTVEENVA-FGLKMRKVPRAEIKPRVLEALRLVQLEEFADR-KPHQLSGGQQQRVALAR 113
Query: 88 LTLNAPDVIILDEPTNNLDIESIDALAD---AINEYKG-GVIIVSHDER 132
+ P +++LDEP + LD + D + I E G + V+HD+
Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 46.7 bits (111), Expect = 1e-06
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 41 EYLQ---RLFNLPYEKARKQLGTF----GLAGHAHTIKMKDLSGGQKARVALAELTLNAP 93
EYLQ ++ + + ++++ GL H K+ LS G + RV LA+ ++ P
Sbjct: 94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQLSKGYRQRVGLAQALIHDP 152
Query: 94 DVIILDEPTNNLD 106
V+ILDEPT LD
Sbjct: 153 KVLILDEPTTGLD 165
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 46.8 bits (111), Expect = 1e-06
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
+ A+ L GL LSGGQK RVA+A + P+++I DEPT LD +
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEH 213
Query: 112 ALADAINEYKGG---VIIVSH 129
+ I + K V +++H
Sbjct: 214 EMMQLILDAKANNKTVFVITH 234
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 46.9 bits (112), Expect = 2e-06
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K K LSGGQ+ RVA+ + P V +LDEP +NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 46.3 bits (110), Expect = 2e-06
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKGGVIIVSHD 130
LS GQK RVA+A + PDVI+LDEP LD E++ + D ++ VI+ +HD
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 46.7 bits (112), Expect = 2e-06
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI-ESIDALADAINEYKGG--VIIV 127
+ +LSGG+ RVA+A L D DEPT+ LDI + ++ A I E G V++V
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV-ARLIRELAEGKYVLVV 267
Query: 128 SHD 130
HD
Sbjct: 268 EHD 270
Score = 44.8 bits (107), Expect = 8e-06
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVII 126
+KDLSGG+ RVA+A D+ +LDEP+ +LD+E A+A AI E + ++
Sbjct: 450 NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV 509
Query: 127 VSHD 130
V HD
Sbjct: 510 VDHD 513
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 46.2 bits (110), Expect = 2e-06
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
+KAR+ + GL +LSGGQ RVA+A + P+V++LDEPT LD
Sbjct: 123 QKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 46.1 bits (110), Expect = 2e-06
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
+LS G++ +A+A L P ++ILDE T+N+D E+ + +A+ + G II++H
Sbjct: 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHR 197
Query: 131 ERLIRDTECTLWVIENQTIEE 151
I++ + L V+++ I E
Sbjct: 198 LSTIKNADKIL-VLDDGKIIE 217
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 46.1 bits (110), Expect = 2e-06
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIV 127
+ +LSGGQ+ R +A + D ++LDEP NNLD+ + + L +E +++V
Sbjct: 133 LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVV 192
Query: 128 SHD 130
HD
Sbjct: 193 LHD 195
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 45.9 bits (110), Expect = 2e-06
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 75 LSGGQKARV----ALAELTLNAPD--VIILDEPTNNLDI----ESIDALADAINEYKGGV 124
LSGG++ RV LA+L ++LDEPT+ LD+ + +E V
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194
Query: 125 IIVSHD 130
I+V HD
Sbjct: 195 IVVLHD 200
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 45.7 bits (109), Expect = 2e-06
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K K LSGGQ+ RVAL + P V ++DEP +NLD
Sbjct: 127 KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 46.1 bits (109), Expect = 3e-06
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 32 HLTAEETPAEYL--QRLFN-LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAEL 88
HL E+ A L Q++ E+ L GL A + + LSGG + R+A+A
Sbjct: 93 HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQ-LSGGMQQRIAIARA 151
Query: 89 TLNAPDVIILDEPTNNLD-------IESIDALADAINEYKGGVIIVSHDE 131
PDV++LDEP + LD E I AL + + E ++ V+HD+
Sbjct: 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT--ILCVTHDQ 199
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 45.5 bits (108), Expect = 3e-06
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 32 HLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
HLTA E R+ E+A KQ L GLA AH +LSGGQ+ RVA+A
Sbjct: 91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP-SELSGGQQQRVAIAR 149
Query: 88 LTLNAPDVIILDEPTNNLDIE---SIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI 144
P +++ DEPT+ LD E + + + E ++IV+H+ L I
Sbjct: 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI 209
Query: 145 ENQTIEEIDGDFDD 158
+ I E DGD
Sbjct: 210 DKGRIAE-DGDPQV 222
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 45.8 bits (109), Expect = 3e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
LSGGQK RVA+A + P+ II DEPT LD E ++ + + +Y +I+++H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 45.1 bits (108), Expect = 3e-06
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 75 LSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
LSGG + +V LA L + P V+ILDEPT +D+ + + I E V+++S +
Sbjct: 105 LSGGNQQKVVLARWLARD-PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 46.1 bits (110), Expect = 3e-06
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIV 127
+ +LSGG+ RVA+A L DV DEP++ LDI A I E VI+V
Sbjct: 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVV 269
Query: 128 SHD 130
HD
Sbjct: 270 EHD 272
Score = 43.1 bits (102), Expect = 3e-05
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSH 129
+LSGG+ RVA+A D+ +LDEP+ LD+E +A I + ++V H
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514
Query: 130 D 130
D
Sbjct: 515 D 515
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 45.5 bits (108), Expect = 4e-06
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGGQ+ R+ +A P+V+++DEPT+ LD S + + I E K ++IV+H+
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN 204
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 45.2 bits (107), Expect = 4e-06
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHD 130
+LSGGQ+ RV +A P V++LDEP LD+ + + L + E G +++ +HD
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 45.2 bits (107), Expect = 4e-06
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
LSGGQ+ R+ +A PDVI++DEPT+ LD S + + + E K +IIV+H+
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN 225
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 45.5 bits (108), Expect = 5e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINE-YKGGVIIVSHDE 131
SGGQ+ R+A+A + P +IILDEPT++LD I AL ++ + ++ + +SHD
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486
Query: 132 RLIR 135
++R
Sbjct: 487 HVVR 490
Score = 40.5 bits (95), Expect = 3e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVIIVSH 129
LSGG++ RV +A L P+++I DEPT LD+ S+ A L + E G++ ++H
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQAQILQLLRELQQELNMGLLFITH 215
Query: 130 DERLIR 135
+ ++R
Sbjct: 216 NLSIVR 221
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 45.1 bits (107), Expect = 6e-06
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSH 129
LSGG+K RVA+ L++P ++++DEP LD E + L E+ ++ VSH
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSH 190
Query: 130 D 130
Sbjct: 191 S 191
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 44.8 bits (106), Expect = 6e-06
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130
DLSGGQ+ R+ +A P+VI++DEP + LD + + D I E + V+IV+H+
Sbjct: 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 44.8 bits (106), Expect = 6e-06
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
+ L L+ H M LSGG++ RV +A P +++LDEPTN+LD+ +
Sbjct: 116 AVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL 174
Query: 112 ALADAINEYKGG---VIIVSHD 130
+ E V+ HD
Sbjct: 175 ETLALVRELAATGVTVVAALHD 196
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 44.8 bits (106), Expect = 6e-06
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 19 RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKM 72
R +IG Q H T + E + + +A K+ L GLA A +
Sbjct: 86 RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPA 145
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVS 128
+ LSGGQ+ RVA+A P V++ DE T+ LD E + + + I +E+ +++V+
Sbjct: 146 Q-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT 204
Query: 129 HDERLIRD 136
H+ R+
Sbjct: 205 HEMGFARE 212
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 45.0 bits (107), Expect = 7e-06
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHD 130
LSGG + +VA+A + P V+ILDEPT +D+ + + IN++K +I+VS +
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
Score = 37.3 bits (87), Expect = 0.003
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNL-DIES 109
Y +A K L L + + +LS G++ V +A++ VII+DEPT+ L D E+
Sbjct: 119 YAEADKLLARLNLRFSSDK-LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177
Query: 110 IDALADAINEYKG---GVIIVSH 129
++L I E K G++ +SH
Sbjct: 178 -ESLFRVIRELKSQGRGIVYISH 199
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 44.8 bits (106), Expect = 8e-06
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG----GVIIVSHD 130
LSGGQK RVA+A + P +IILDE T+ LD + + I + K VI ++HD
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 44.3 bits (105), Expect = 8e-06
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 74 DLSGGQKARVALAELTLNAP-DVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS 128
+LSGG+ RVA+A L+ D+ +LDEP+ LD+E + I + + +V
Sbjct: 115 ELSGGELQRVAIA-ACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVE 173
Query: 129 HD 130
HD
Sbjct: 174 HD 175
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 44.5 bits (106), Expect = 9e-06
Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 16/112 (14%)
Query: 32 HLTAEETPAE--YLQRLFN--------LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA 81
HL E T AE YL +L + L +AR+QL G+ T +K LS GQ+
Sbjct: 89 HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQ 147
Query: 82 RVALAE-LTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVII-VSH 129
V +A+ L NA VI DEPT++L I+ L I E + G VI+ VSH
Sbjct: 148 MVEIAKALARNA-RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198
Score = 30.6 bits (70), Expect = 0.45
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI-------ESIDALADAINEYKGG 123
+ +LSGG + + L VI+LDEPT +D+ I LA
Sbjct: 393 LIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ----GVA 448
Query: 124 VIIVSHD 130
V+ VS D
Sbjct: 449 VLFVSSD 455
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 44.7 bits (106), Expect = 9e-06
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHD 130
LSGGQK RVALA P +++LDEP LD + L + E K + V+HD
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196
Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDYR----KELLEALGEV 170
+ + + V+ IE+ +R + +LE +GEV
Sbjct: 197 QEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEV 240
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 44.2 bits (104), Expect = 9e-06
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
LSGGQ+ R+ +A +P V+++DEP + LD S + + I+E K ++IV+H+ +
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQ 206
Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRK 161
+ R ++ T + + +E +DD +K
Sbjct: 207 QAARVSDKTAFFYMGEMVE-----YDDTKK 231
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 44.2 bits (105), Expect = 1e-05
Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Query: 75 LSGGQKARVALAE-LTLNAPDVIILDEPTNNLD 106
LSGGQK RVA+A L LN P++II DE T+ LD
Sbjct: 143 LSGGQKQRVAIASVLALN-PEIIIFDESTSMLD 174
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 44.2 bits (105), Expect = 1e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGGQ+ R+ +A P+V++LDEP + LD S + + I E K V+IV+H+
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN 214
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 44.6 bits (106), Expect = 1e-05
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 8/88 (9%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGG++ R+A+A L P ++ILDE T+ LD+E+ + A++E G I++H R
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAH--R 529
Query: 133 L--IRDTECTLWVIENQTIEEIDGDFDD 158
L +R+ + L V +N + E G FD+
Sbjct: 530 LSTVRNADRIL-VFDNGRVVE-SGSFDE 555
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 44.0 bits (104), Expect = 1e-05
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK----GGVIIVSHD 130
+SGGQ ++A+ + PD+I+LDEPT LD +S + + + +I+VSHD
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 43.8 bits (104), Expect = 1e-05
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
+A +Q LA T DLSGGQ+ R LA + V++LDEPT LDI
Sbjct: 120 NQAMEQTRINHLADRRLT----DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV 175
Query: 112 ALADAINEYKGG---VIIVSHD 130
L + E V+ V HD
Sbjct: 176 ELMRLMRELNTQGKTVVTVLHD 197
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 44.0 bits (103), Expect = 1e-05
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 69 TIKMKDLSGGQKARVALAEL---TLNAPDVIILDEPTNNLDIESIDALADAIN---EYKG 122
+ +K +S G K +AL L ++++DEP N L + + L + + E
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGA 243
Query: 123 GVIIVSHDERLIR 135
+I +H L+
Sbjct: 244 QLIFTTHSPLLLD 256
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 43.8 bits (103), Expect = 1e-05
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD-E 131
LSGGQ+ RV +A + PDVI+LDEPT+ LD S + + + E + +I+V+H
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMH 208
Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKELL 164
+ R ++ T + + IE F D ++ L
Sbjct: 209 QASRISDKTAFFLTGNLIE-----FADTKQMFL 236
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 44.0 bits (104), Expect = 1e-05
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHD 130
LSGGQ+ RVALA P V++LDEP LD + L + +E + V+HD
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190
Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDYRKE----LLEALGEV 170
+ + + V+ N IE+I + Y ++ LGEV
Sbjct: 191 QEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEV 234
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 43.6 bits (103), Expect = 1e-05
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 52 EKARKQLGTFGLAGHAHTIKMK----DLSGGQKARVALAELTLNAPDVIILDEPTNNLD- 106
+ L GLAG K +LSGG++ RVALA + + V++LDEP LD
Sbjct: 107 QAIEVALARVGLAG-----LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 107 ---IESIDALADAINEYKGGVIIVSH 129
E +D + D E K V++V+H
Sbjct: 162 ALRAEMLDLVLDLHAETKMTVLMVTH 187
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 43.9 bits (103), Expect = 1e-05
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
LSGGQ+ R+ +A P V+++DEPT+ +DI + A+ I E K ++IVSH+
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 43.8 bits (103), Expect = 1e-05
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
LSGGQ+ R+ +A +P+VI++DEP + LD S + D I++ K ++IV+H+ +
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ 206
Query: 132 RLIRDTECTLWVIENQTIE 150
+ R ++ T + + + IE
Sbjct: 207 QATRVSKYTSFFLNGEIIE 225
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 43.9 bits (104), Expect = 1e-05
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHD 130
LSGGQ RV LA P ++ILDE +NLD+ I L ++ + ++HD
Sbjct: 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211
Query: 131 ERLIR 135
RL+
Sbjct: 212 LRLVE 216
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 44.3 bits (105), Expect = 1e-05
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LSGGQ+ R+A+A L +++LDE T+ LD ES + A+ G +I++H
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAH 533
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 43.6 bits (103), Expect = 1e-05
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LSGGQ+ R+A+A ++ P ++I DE T+ LD ES A+ +++ G VII++H
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAH 195
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.6 bits (103), Expect = 1e-05
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGGQ+ R+ +A PD++++DEP + LD S L + + E K +IIV+H+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN 221
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 43.3 bits (102), Expect = 1e-05
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
L F L T + +LSGG+K R+AL P +++LDE T+ LD + + + I
Sbjct: 117 LARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 118 NEY----KGGVIIVSHD 130
+ Y V+ ++HD
Sbjct: 177 HRYVREQNVAVLWITHD 193
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 43.8 bits (103), Expect = 2e-05
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---IE 108
E++ K+ + LSGGQ+ R+ +A P+VI+LDEPT+ LD +
Sbjct: 124 EESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183
Query: 109 SIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIE 150
I+ L + ++E VI+ + + IR + ++ + IE
Sbjct: 184 RIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 43.7 bits (103), Expect = 2e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
++ DLSGG K R+ LA +N P ++ILDEPT LD
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 43.5 bits (103), Expect = 2e-05
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 7 LQPQQGEL----------KKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKA 54
L+P G + R RIG Q + LT E RL+ +P +
Sbjct: 50 LKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN-LYIHARLYGVPGAER 108
Query: 55 RKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI 110
R++ L GL A + +K SGG + R+ +A ++ P+V+ LDEPT LD ++
Sbjct: 109 RERIDELLDFVGLLEAADRL-VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167
Query: 111 DALADAINEYK 121
+ + I + K
Sbjct: 168 AHVWEYIEKLK 178
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 43.6 bits (103), Expect = 2e-05
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGGQ+ R+ +A P+VI++DEP + LD S + + ++E K ++IV+H+
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 43.5 bits (103), Expect = 2e-05
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIV 127
++ LS GQ+ R LA L+ P V+ LDEPT LD+ + + + + EY + V++
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213
Query: 128 SHD 130
+H
Sbjct: 214 THI 216
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K LSGGQ+ RVA+A +N P V++LDE + LD
Sbjct: 141 KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 42.7 bits (101), Expect = 2e-05
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
SGG++ R+ALA + L +++LDEPT LD + L I E +I ++H
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 43.3 bits (102), Expect = 2e-05
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKGGVIIVSHD- 130
LSGGQ+ R+ +A PDVI++DEPT+ LD I+ L + + + ++IV+H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM 204
Query: 131 --ERLIRDTECTLWVIE 145
R I D + E
Sbjct: 205 QQARRISDRTAFFLMGE 221
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 43.6 bits (103), Expect = 2e-05
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
+LSGGQ RVA+A + P +++LDEPT LD
Sbjct: 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 43.4 bits (103), Expect = 2e-05
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 25/114 (21%)
Query: 27 QHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALA 86
Q A + + L L + LSGG+ RV LA
Sbjct: 94 QPDKTRTEAVASALNEVAEALGL----------DDKLGRSVNQ-----LSGGEWQRVRLA 138
Query: 87 ELTLN-APDV------IILDEPTNNLDI---ESIDALADAINEYKGGVIIVSHD 130
+ L PD+ ++LDEP N+LD+ ++D L + + V++ SHD
Sbjct: 139 AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 42.6 bits (100), Expect = 2e-05
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSH 129
DLSGG+ RVA+A L + DEP+ LDIE A AI E K ++V H
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
Query: 130 D 130
D
Sbjct: 131 D 131
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 43.1 bits (101), Expect = 2e-05
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD-E 131
LSGGQ+ R+ +A P+++++DEPT+ LD S + D + + K +IIV+H+
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208
Query: 132 RLIRDTECTLWVIENQTIEE--IDGDFDDYRKELLEA 166
+ R ++ T + + +E D F + R E EA
Sbjct: 209 QAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERTEA 245
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 42.9 bits (101), Expect = 2e-05
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG----VIIVSHD 130
LS GQK RVA+A + + P V++LDEPT LD + + + E + +II +HD
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.8 bits (101), Expect = 3e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGGQ+ RV +A + +P +I+LDEPT+ LD
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.0 bits (101), Expect = 3e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI----DALADAINEYKGGVIIVSHD 130
LSGGQ+ R+ +A PDVI++DEPT+ LD S D + + EY ++IV+H+
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYT--IVIVTHN 205
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 42.8 bits (101), Expect = 3e-05
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEY 120
A + LSGG K RVA+A P V++LDEP LD + L E+
Sbjct: 105 TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164
Query: 121 KGGVIIVSHD---ERLIRDTECTLWVIENQTIEEI-DGDFDDYRKELLEALGEVVNNPS 175
+ V++V+HD L+ D L I +I + F R L EVV +PS
Sbjct: 165 RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFPRPRDRL-----EVVEDPS 218
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 43.2 bits (102), Expect = 3e-05
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131
M LSGG+K R+A+A L + P ILDE T+ + ++ + E+ + VSH +
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRK 639
Query: 132 RLIRDTECTLWVIENQTIEEIDGD 155
L + E L +DG
Sbjct: 640 SLWKYHEYLL---------YMDGR 654
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 42.7 bits (101), Expect = 3e-05
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAI 117
GL ++ LSGGQ+ ++L TL+ P +++LDE T LD ++ A +
Sbjct: 137 GLENRLSD-RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 118 NEYKGGVIIVSH 129
E+K ++V+H
Sbjct: 196 EEHKLTTLMVTH 207
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 43.2 bits (102), Expect = 3e-05
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 75 LSGGQKARVALAELTL-NAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LSGGQ+ R+A+A L +AP ++ILDE T+ LD ES + A+ G ++++H
Sbjct: 470 LSGGQRQRLAIARALLKDAP-ILILDEATSALDNESERLVQAALERLMQGRTTLVIAH 526
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 42.7 bits (101), Expect = 3e-05
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
LSGGQ+ RVALA + +++LDEP + LD E + ++ +E K +++V+H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 42.8 bits (100), Expect = 3e-05
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 47 FNLPYEKARK----QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPT 102
F +P EKA K +L GLA +LSGGQ RVA+A + P+V++LDEPT
Sbjct: 113 FGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172
Query: 103 NNLDIES---IDALADAINEYKGGVIIVSH 129
LD ++ + L ++I++ V++V+H
Sbjct: 173 AGLDPKARIEMMQLFESIHQSGQTVVLVTH 202
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 42.9 bits (101), Expect = 3e-05
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSH 129
+LSGGQ+ R+ +A P ++++DEPT N+D + + + E K +++V+H
Sbjct: 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 42.9 bits (101), Expect = 3e-05
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDER 132
SGG+K R + ++ + P++ ILDE + LDI+++ +AD +N + G IIV+H +R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206
Query: 133 LI 134
++
Sbjct: 207 IL 208
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 42.7 bits (101), Expect = 3e-05
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 75 LSGGQKARVALAEL------TLNAPDVIILDEPTNNLDI---ESIDALADAINEYKGGVI 125
LSGG++ RV LA + + + + LDEPT+ LDI LA + G V+
Sbjct: 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL 195
Query: 126 IVSHD 130
V HD
Sbjct: 196 AVLHD 200
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 42.7 bits (101), Expect = 4e-05
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGV--IIVSHD 130
LSGGQ+ RVALA +P +++LDEP + LD + L I + + GV I+V+HD
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194
Query: 131 E 131
+
Sbjct: 195 Q 195
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 42.3 bits (100), Expect = 4e-05
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
L T GL + LS GQK + + L P +++LDEP + + A+ +
Sbjct: 132 LATIGLGDERDRLA-ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190
Query: 118 NEYKGG--VIIVSHDERLIRD 136
G +++V HD +R+
Sbjct: 191 KSLAGKHSILVVEHDMGFVRE 211
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 42.5 bits (100), Expect = 4e-05
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAINEYKG-GVIIVSHD 130
LSGGQ R+ +A P +I+LDE +NLD+ I L + + G + ++HD
Sbjct: 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210
Query: 131 ERLIRDTECTLWVIEN-QTIEEID 153
RL++ + V++ Q +EE D
Sbjct: 211 LRLVQSFCQRVAVMDKGQIVEECD 234
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 42.2 bits (100), Expect = 5e-05
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--- 121
G +K S G AR+A + T PD+++LDE D + + +NE
Sbjct: 138 GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197
Query: 122 GGVIIVSHDERLIRDT-ECTLWVIENQTIEEIDGDFDD 158
+++VSHD I+ + +W +E+ I +G ++
Sbjct: 198 KTIVLVSHDLGAIKQYCDRAIW-LEHGQIRM-EGSPEE 233
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 42.0 bits (99), Expect = 5e-05
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHDE 131
SGG + R+ +A + P ++ +DEPT LD+ +D L + E V+IV+HD
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212
Query: 132 RLIR 135
+ R
Sbjct: 213 AVAR 216
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 41.8 bits (98), Expect = 6e-05
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGGQ+ R+ +A PDV+++DEPT+ LD S + + I + K ++IV+H+
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 42.6 bits (100), Expect = 6e-05
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 32 HLTAEETPAEYLQRLFNLPYEKARKQ--------LGTFGLAGHAHTIK----MKDLSGGQ 79
HLT ET L LP +++ + GL +TI ++ +SGG+
Sbjct: 154 HLTVRETLV--FCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE 211
Query: 80 KARVALAELTLNAPDVIILDEPTNNLD 106
+ RV++A L P ++ILDEPT+ LD
Sbjct: 212 RKRVSIAHEMLINPSLLILDEPTSGLD 238
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 42.2 bits (100), Expect = 6e-05
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL- 133
LSGGQ+ R+ +A + P ++ILDE T+ LD E+ + D + IIV+H RL
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH--RLS 673
Query: 134 -IRD 136
IRD
Sbjct: 674 TIRD 677
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 42.2 bits (99), Expect = 6e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
+++ LSGG K R+ LA +N P ++ILDEPT LD
Sbjct: 131 VRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.9 bits (98), Expect = 6e-05
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
+LSGGQ+ R+ +A P+VI++DEP + LD S + + I E K +IIV+H+
Sbjct: 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 41.7 bits (98), Expect = 6e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
LSGGQ+ R+ +A P+VI++DEP + LD + + D I + K VIIV+H+
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 41.9 bits (98), Expect = 6e-05
Identities = 24/80 (30%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV--IIVSHD- 130
+LSGGQ+ R+ +A P++++ DEPT+ LD + ++ + I++ K V +IV+H+
Sbjct: 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
Query: 131 ERLIRDTECTLWVIENQTIE 150
++ R ++ T ++ + IE
Sbjct: 221 QQAARVSDYTAYMYMGELIE 240
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 41.9 bits (98), Expect = 7e-05
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----I 107
EKA L GL +AH+ +LSGG + RV LA PD++++DE + LD
Sbjct: 143 EKALDALRQVGLENYAHSYP-DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201
Query: 108 ESIDALADAINEYKGGVIIVSHD 130
E D L +++ ++ +SHD
Sbjct: 202 EMQDELVKLQAKHQRTIVFISHD 224
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 41.3 bits (98), Expect = 7e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEP 101
LSGGQK R++LA + D+ +LD+P
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDP 154
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 41.6 bits (98), Expect = 7e-05
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 50 PYEKA-RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE 108
P L F L T + +LSGG+K R++L P V++LDE T+ LD
Sbjct: 112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171
Query: 109 SIDALADAINEY----KGGVIIVSHD 130
+ + + I+ Y V+ V+HD
Sbjct: 172 NKHNVNEIIHRYVREQNIAVLWVTHD 197
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 41.8 bits (99), Expect = 7e-05
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 52 EKAR--KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
EK R + L T GLA A LS GQK + + L + P +++LDEP + E
Sbjct: 120 EKDRIEEVLETIGLADEADR-LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEE 178
Query: 110 IDALADAINEYKGG--VIIVSHDERLIRDTECTLWV 143
+ A+ + G V++V HD +R + V
Sbjct: 179 TEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTV 214
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 41.5 bits (98), Expect = 7e-05
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LSGGQ+ R+ +A P+V++LDEPT+ LD S + + I E K ++IV+H
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 41.6 bits (97), Expect = 7e-05
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
LSGGQ+ R+ +A P+VI++DEPT+ LD S + + I K +IIV+H+ +
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQ 210
Query: 132 RLIRDTECTLWVIENQTIEEIDGD 155
+ R ++ T + + EE D
Sbjct: 211 QAGRISDRTAFFLNGCIEEESSTD 234
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 41.7 bits (98), Expect = 8e-05
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
LSGGQ+ R+ +A P+VI++DEP + LD S + + ++E K +IIV+H+
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 42.0 bits (99), Expect = 8e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
+SGGQK R+ALA L V+ILDE T+NLD
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 41.2 bits (97), Expect = 9e-05
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
E A + L GL G A + LSGGQ+ RV +A P +++LDEP LD
Sbjct: 107 EIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 41.2 bits (97), Expect = 1e-04
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII----VSHD 130
+SGGQ+ RVALA + P V++ DEP +NLD ++ + I E + I V+HD
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196
Query: 131 E 131
+
Sbjct: 197 Q 197
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 41.2 bits (97), Expect = 1e-04
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE---SIDALADAINEYKGGVIIV 127
+ LSGG+ RVA+A D DEP++ LDI+ + L + E V++V
Sbjct: 136 NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVV 195
Query: 128 SHD 130
HD
Sbjct: 196 EHD 198
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 41.7 bits (98), Expect = 1e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
+LSGGQKARV+LA DV +LD+P + LD
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 41.0 bits (96), Expect = 1e-04
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 33 LTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA 92
L + TP + ++R K + L GL G H +LSGGQK RVA+A +
Sbjct: 107 LELDNTPKDEIKR-------KVTELLALVGL-GDKHDSYPSNLSGGQKQRVAIARALASN 158
Query: 93 PDVIILDEPTNNLD---IESIDALADAINEYKG-GVIIVSHDERLIR 135
P V++ DE T+ LD +SI L IN G +++++H+ +++
Sbjct: 159 PKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVK 205
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 40.8 bits (96), Expect = 1e-04
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 50 PYEKARK----QLGTFGLAGHAHTIKMK--DLSGGQKARVALAELTLNAPDVIILDEPTN 103
++AR L GL +K LSGG RV +A L P +I DEPT
Sbjct: 95 LSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154
Query: 104 NLDIES---IDALADAINEYKG-GVIIVSHDERL---IRDTECTL---WVIENQTIEEI 152
+LD+ + + L + + G G+++++HD + I D + ++E T++EI
Sbjct: 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 41.2 bits (96), Expect = 1e-04
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 76 SGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESID----ALADAINEYKGG-- 123
S GQK R+ALAE +I LDEPT NLD E+I+ AL + I
Sbjct: 1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN 1260
Query: 124 --VIIVSHDERLI 134
+++++HDE +
Sbjct: 1261 FQLLVITHDEDFV 1273
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 41.5 bits (97), Expect = 1e-04
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 19 RLRIGRFDQHS--GEHLTAEETPAEYLQRLFNLPYEKARKQLGTF----GLAGHAHTIKM 72
R +G QH+ HLT E Y Q L +E+A+ ++ GL H +
Sbjct: 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQ-LKGRSWEEAQLEMEAMLEDTGLH-HKRNEEA 1059
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIV 127
+DLSGG + ++++A + V++LDEPT+ +D S ++ D + +Y+ G I+
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTII 1114
Score = 32.3 bits (73), Expect = 0.15
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 45 RLFNLPYEKARK----QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDE 100
RL +P E+ K + + GL+ +A + SGG K +++ A + P +++LDE
Sbjct: 2038 RLRGVPAEEIEKVANWSIQSLGLSLYADRLA-GTYSGGNKRKLSTAIALIGCPPLVLLDE 2096
Query: 101 PTNNLDIESIDALADAI 117
PT +D ++ L + I
Sbjct: 2097 PTTGMDPQARRMLWNTI 2113
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 40.5 bits (95), Expect = 1e-04
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG-GVIIVS--HDER 132
SGG++ RV +A + +++LDEPT +LD + + + I E K G ++ HDE
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE 210
Query: 133 LIRD 136
+
Sbjct: 211 VREL 214
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 40.9 bits (97), Expect = 2e-04
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE---SIDALADAIN 118
GL+ A LSGGQK RVA+A + P V++ DE T+ LD SI L IN
Sbjct: 129 GLSDKADRYP-AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 119 EYKGGVIIV 127
+ G+ IV
Sbjct: 188 R-ELGLTIV 195
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 40.8 bits (95), Expect = 2e-04
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGGQ+ R+ +A P +I+ DEPT+ LD S + D I K ++IV+H+
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 40.4 bits (95), Expect = 2e-04
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDER 132
SGG+K R + ++ L ++ ILDE + LDI+++ +A+ IN+ +I+++H +R
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212
Query: 133 LI 134
L+
Sbjct: 213 LL 214
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 40.3 bits (94), Expect = 2e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSH 129
LSGGQ+ R+ +A P+V++ DEPT NLD E+ + E K +++V+H
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 40.5 bits (94), Expect = 2e-04
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 49 LPYEKARKQLGTFGLAGHAHTIKMKD---LSGGQKARVALAELTLNAPDVIILDEPTNNL 105
+P E+ K++ LA + K ++ LSGGQK RVA+A + P++IILDE T+ L
Sbjct: 112 IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSML 171
Query: 106 DIESIDALADAINE----YKGGVIIVSHD 130
D + I+E Y+ V+ ++HD
Sbjct: 172 DPTGRQEIMRVIHEIKEKYQLTVLSITHD 200
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 39.8 bits (93), Expect = 2e-04
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
LSGGQ+ RVALA + +++LDEP + LD E + + +E + +++V+H
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 40.4 bits (94), Expect = 2e-04
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAIN-EYKGGVIIVSH 129
+LSGGQK RVALA + + ++LDEPT LD E L + +N EYK +I+V+H
Sbjct: 150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209
Query: 130 D 130
+
Sbjct: 210 N 210
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 40.1 bits (94), Expect = 2e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---E 108
E A + L GL G H + LSGG + RV +A P +++LDEP LD E
Sbjct: 111 EIAHQMLALVGLEGAEHK-YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTRE 169
Query: 109 SI-DALADAINEYKGGVIIVSHD 130
+ + L D E V++++HD
Sbjct: 170 QMQELLLDLWQETGKQVLLITHD 192
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 40.5 bits (95), Expect = 3e-04
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 70 IKMKDLSGGQKARVALAE-LTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVI 125
K+ +LS K + +A+ L L+A VII+DEPT++L + +D L +N+ + ++
Sbjct: 141 EKVANLSISHKQMLEIAKTLMLDA-KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 126 IVSHDERLIR 135
+SH IR
Sbjct: 200 YISHKLAEIR 209
Score = 35.1 bits (81), Expect = 0.015
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 46 LFNLPYEK--ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN 103
LF+ E+ A Q L H+ + +LSGG + +V +++ P+VII DEPT
Sbjct: 379 LFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTR 438
Query: 104 NLDIES---IDALADAINEYKGGVIIVS 128
+D+ + I + + + +++VS
Sbjct: 439 GIDVGAKAEIYKVMRQLADDGKVILMVS 466
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 40.1 bits (94), Expect = 3e-04
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSH 129
LSGGQ+ R+ +A +P+VI++DEP + LD + + + I+E + ++IV+H
Sbjct: 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 39.8 bits (93), Expect = 3e-04
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHDE 131
SGG + R+ +A + P ++ +DEPT LD+ +D L + + VIIV+HD
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209
Query: 132 RLIR 135
+ R
Sbjct: 210 GVAR 213
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 40.0 bits (94), Expect = 3e-04
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI 110
A+ L G A H LS G++ RV +A + P+++ILDEP LD+ +
Sbjct: 149 LAAAQWLLELLG-AKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 111 DALADAINEYKGG-----VIIVSH 129
+ L + + E ++ V+H
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTH 231
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 39.5 bits (93), Expect = 3e-04
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 16/80 (20%)
Query: 75 LSGGQKARVALA-ELTLNAPDVI-ILDEPTNNLD-------IESIDALADAINEYKGGVI 125
LSGG+ R+ LA ++ V+ +LDEP+ L IE++ L D N V+
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNT----VL 193
Query: 126 IVSHDERLIRDTECTLWVIE 145
+V HDE IR + VI+
Sbjct: 194 VVEHDEDTIRAAD---HVID 210
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 40.1 bits (94), Expect = 3e-04
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
LS GQK +ALA + + P ++ILDE T N+D + A+ A+ +
Sbjct: 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL--------------AAV 522
Query: 135 RDTECTLWVIENQ--TIEEID 153
R+ TL VI ++ TI E D
Sbjct: 523 RE-HTTLVVIAHRLSTIVEAD 542
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 39.7 bits (92), Expect = 3e-04
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
LSGGQ+ R+ +A + P+VI++DEP + LD S + + + E K + IV+H+ +
Sbjct: 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQ 207
Query: 132 RLIRDTECTLWVIENQTIE 150
+ R ++ T +++ +E
Sbjct: 208 QAARASDWTGFLLTGDLVE 226
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 39.6 bits (92), Expect = 3e-04
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD-E 131
LSGGQ+ R+ +A P V++LDEP + LD S + + I E K +IIV+H+ +
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224
Query: 132 RLIRDTECTLWVIENQTIE 150
+ +R ++ T + + +E
Sbjct: 225 QALRVSDRTAFFLNGDLVE 243
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 39.7 bits (93), Expect = 3e-04
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA 116
+L GL G A + +LSGG R ALA PD+I+ DEP D ++ L
Sbjct: 127 KLEAVGLRGAAK-LMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL 185
Query: 117 INEYKG--GV--IIVSHD 130
I+E GV ++VSHD
Sbjct: 186 ISELNSALGVTCVVVSHD 203
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 39.8 bits (93), Expect = 4e-04
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 17 NHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLS 76
N RLRIG+ L + P + +++F L GL L+
Sbjct: 101 NPRLRIGQI-LDFPLRLNTDLEPEQRRKQIFE--------TLRMVGLLPDHANYYPHMLA 151
Query: 77 GGQKARVALAELTLNAPDVIILDEPTNNLD 106
GQK RVALA + P +II DE +LD
Sbjct: 152 PGQKQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 39.3 bits (92), Expect = 4e-04
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 34 TAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP 93
A A+ L RL NLP TF SGG++ RV +A +
Sbjct: 127 VARAKAADLLTRL-NLPERLWSLAPATF--------------SGGEQQRVNIARGFIVDY 171
Query: 94 DVIILDEPTNNLDIESIDALADAINEYKG-GVIIVS--HDE 131
+++LDEPT +LD + + + I E K G +V HDE
Sbjct: 172 PILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE 212
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 39.4 bits (92), Expect = 4e-04
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
+LSGGQ+ R+ +A P ++++DEP + LD + + + + I E K +I+V+H
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208
Query: 132 RLIRDTE------CTLWVIENQTIEEI 152
+ + + ++E T +EI
Sbjct: 209 KQAKKVSDRVAFFQSGRIVEYNTTQEI 235
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 39.8 bits (93), Expect = 4e-04
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL----ADAINEYKGGVII 126
K LSGGQ+ RVALA P +++LDEP LD + D + D + ++
Sbjct: 146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 127 VSHDE 131
V+HD+
Sbjct: 206 VTHDQ 210
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 39.5 bits (93), Expect = 4e-04
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 75 LSGGQKARVALA-ELTLNAP--DVIILDEPTNNLDIESIDALADAINE--YKGG-VIIVS 128
LSGG+ R+ LA EL+ + + ILDEPT L + L + + KG V+++
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 129 HDERLIRDTECTLWVIE 145
H+ +I+ C W+I+
Sbjct: 230 HNLDVIK---CADWIID 243
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 39.4 bits (92), Expect = 4e-04
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD------IESIDALADAINEYKGGVIIVS 128
LSGGQ+ R+ +A P+VI++DEP + LD IE D + + EY V++V+
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE--DLIEELAEEYT--VVVVT 256
Query: 129 HD 130
H+
Sbjct: 257 HN 258
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 39.3 bits (92), Expect = 5e-04
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 74 DLSGG--QKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIV 127
++SGG Q+ +ALA L AP II DEPT +LD+ + +D L + + G+++V
Sbjct: 140 EMSGGMLQRMMIALALLC-EAP-FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV 197
Query: 128 SHD 130
+HD
Sbjct: 198 THD 200
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 39.3 bits (91), Expect = 5e-04
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 12/63 (19%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI-------ESIDALADAINEYKGGVIIV 127
LSGGQ+ + LA P+V++LDEPT+ LD E I +LAD + VIIV
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT-----VIIV 218
Query: 128 SHD 130
+H+
Sbjct: 219 THN 221
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 39.5 bits (93), Expect = 5e-04
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 75 LSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
LSGG + ++ LA EL PD++I +PT LD+ +I+ + + + E + V+++S D
Sbjct: 404 LSGGNQQKLILARELARR-PDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED 462
Score = 36.4 bits (85), Expect = 0.005
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSH 129
DLS G++ RV + + ++ILDEPT L + D L + + +I ++H
Sbjct: 140 DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 36.8 bits (86), Expect = 5e-04
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 72 MKDLSGGQKA-------RVALAEL-----TLNAPDVIILDEPTNNLDIESIDALADAINE 119
LSGG+K ALA AP +I LDE LD E+I +L + + E
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 39.1 bits (92), Expect = 5e-04
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIV 127
+K S G KAR+A A T PD++++DE D + + E VI+V
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILV 198
Query: 128 SHDERLIRDTECT--LWVIENQTIEEID 153
SHD I+ C L +E I
Sbjct: 199 SHDPSSIKRL-CDRALV-LEKGKIRFDG 224
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 39.3 bits (91), Expect = 6e-04
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSH 129
LSGGQ+ R+ +A P+V+++DEPT+ LD + + + I E K +IIV+H
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTH 282
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 39.4 bits (93), Expect = 6e-04
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGG++ R+ +A L+ +++LDEPT LD E+ + + + E+ V++++H R
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH--R 533
Query: 133 LI 134
L
Sbjct: 534 LT 535
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 39.4 bits (92), Expect = 6e-04
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD--IES 109
++ +QL GLA A K +LSGG + RV LA ++++DEP + LD I +
Sbjct: 143 KRVDEQLELVGLAQWADR-KPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201
Query: 110 --IDALADAINEYKGGVIIVSHD 130
D L + ++ K ++ VSHD
Sbjct: 202 QLQDELLELQSKLKKTIVFVSHD 224
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 39.0 bits (91), Expect = 6e-04
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGGQ+ R+ +A P+V+++DEP + LD + + + I+E K +IIV+H+
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 39.1 bits (91), Expect = 6e-04
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVS 128
+LSGGQK RV LA VI+LDEP +D+++ + + E + G ++VS
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVS 198
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 38.9 bits (91), Expect = 7e-04
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGGQ+ RVALA P V++LDEP LD
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 39.1 bits (91), Expect = 8e-04
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 75 LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK------- 121
LSGG+K RVA+A+ N ++I+DEPT LD + L D I EY
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDII-EYSLKDSSDI 860
Query: 122 GGVIIVSHDERLI 134
VI++SH L+
Sbjct: 861 PQVIMISHHRELL 873
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 38.8 bits (91), Expect = 8e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD 115
K LS G+ + L + ++ PD++ILDEP + LD+ S LA+
Sbjct: 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE 176
Score = 28.1 bits (63), Expect = 2.8
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
A++ L G+ LS GQ+ + + P ++ILDEP LD
Sbjct: 380 LAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 38.7 bits (90), Expect = 0.001
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI-------ESIDALAD 115
LSGG++ RV LA A V++LDEPT +LDI E + L D
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 38.7 bits (90), Expect = 0.001
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHD 130
LSGG + RV +A P V+I DEPT LD+ + I E GVI ++HD
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
Query: 131 ERLIRDTECTLWV------IENQTIEEI 152
++ + + V +E ++E+I
Sbjct: 229 MGVVAEIADRVLVMYQGEAVETGSVEQI 256
Score = 36.8 bits (85), Expect = 0.005
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 74 DLSGGQKARVALAE-LTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVS 128
+ SGGQ+ R+ +A L LN P VII DE + LD+ + I+ L D ++ + +S
Sbjct: 463 EFSGGQRQRICIARALALN-PKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFIS 521
Query: 129 HD 130
HD
Sbjct: 522 HD 523
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 38.2 bits (89), Expect = 0.001
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI-ESI 110
EK + + GL AH + + LSGG++ R +A L ++LDEPT+ LDI +
Sbjct: 126 EKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184
Query: 111 DALA--DAINEYKG-GVIIVSHD 130
D LA +++ +G VI V HD
Sbjct: 185 DVLALVHRLSQERGLTVIAVLHD 207
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 38.0 bits (89), Expect = 0.001
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD-------IESIDALADAINEYKGGVIIV 127
+SGG++ RV++AE ++ V+ D T LD ++ I +AD + V
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL----KTTTFV 174
Query: 128 S 128
S
Sbjct: 175 S 175
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 38.4 bits (90), Expect = 0.001
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGG + + LA+ L P ++ILDEPT +D+
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438
Score = 31.1 bits (71), Expect = 0.30
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 33 LTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE-LTLN 91
L E TP + ++ Y +A+K L L + T + +L GQ+ V +A+ L
Sbjct: 105 LGNEITPGGIMD--YDAMYLRAQKLLAQLKLDINPAT-PVGNLGLGQQQLVEIAKALNKQ 161
Query: 92 APDVIILDEPTNNLDIESIDALADAINEYK-GGV--IIVSH--DE-RLIRDTECTL 141
A ++ILDEPT +L L D I + K G+ I +SH +E + I DT C +
Sbjct: 162 A-RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI 216
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 37.6 bits (87), Expect = 0.001
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHDE 131
LS GQK +VAL L ++ + +LDEP LD S+ + I E++ G V++ SH +
Sbjct: 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 38.1 bits (89), Expect = 0.001
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 75 LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVI 125
LSGG++ R+AL+ ++ILDEPT LD E L D + Y VI
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVI 848
Query: 126 IVSHDERL 133
IVSHDE L
Sbjct: 849 IVSHDEEL 856
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 37.6 bits (88), Expect = 0.001
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 73 KDLSGGQKARVALA---------ELTLNAP-DVIILDEPTNNLDIESIDALADAINEYKG 122
LSGG+ +L+ + A + + +DE LD E+++A+A A+ +
Sbjct: 122 STLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT 181
Query: 123 G---VIIVSHDERL 133
V ++SH E L
Sbjct: 182 ENRMVGVISHVEEL 195
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 38.3 bits (89), Expect = 0.002
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVII 126
K +LS GQK R LA+L P+V+++DE +LD + +A I+ E +I+
Sbjct: 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 127 VSHDERLIR 135
V+H +
Sbjct: 564 VTHRPEVGN 572
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 37.0 bits (85), Expect = 0.002
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY 120
L K SG + R+ALA PDV+ILDE T+ LD E L
Sbjct: 47 DQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106
Query: 121 KGGVIIVSHDERLI 134
++ + +I
Sbjct: 107 LLLLLKSEKNLTVI 120
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 37.4 bits (87), Expect = 0.002
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
+LS GQ+ + LA L P V++LDE T ++D + + I E ++ ++H
Sbjct: 125 NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRL 184
Query: 132 RLIRDTECTLWVIENQTIEEID 153
R I D + L V++ ++E D
Sbjct: 185 RTIIDYDKIL-VMDAGEVKEYD 205
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 37.5 bits (87), Expect = 0.002
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 75 LSGGQKARVALAELTLN-APDV------IILDEPTNNLDIESIDALADAINEYKG---GV 124
LSGG+ RV LA + L PD ++LDEP N+LD+ AL ++ +
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAI 185
Query: 125 IIVSHD 130
++ SHD
Sbjct: 186 VMSSHD 191
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 37.7 bits (88), Expect = 0.002
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG----VIIVS 128
+LSGGQ+ RV +A P ++++DEP LD + L + I E + ++ V+
Sbjct: 134 HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT 193
Query: 129 HDE 131
HD
Sbjct: 194 HDI 196
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 37.7 bits (87), Expect = 0.002
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
LSGGQ+ R+ +A PDV+++DEP + LD S + + E K +I+V+H+
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHN 219
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 37.7 bits (87), Expect = 0.002
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 49 LPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNN 104
LP + RK+ L GL + H K LSGGQ VALA + P+ +I DE T+
Sbjct: 108 LPPIEIRKRVDRALAEIGLEKYRHR-SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSM 166
Query: 105 LDIESIDALADAINEY--KGGVII-VSHD 130
LD +S A+ + I + KG I+ ++H+
Sbjct: 167 LDPDSGIAVLERIKKLHEKGKTIVYITHN 195
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 37.5 bits (87), Expect = 0.002
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 37.1 bits (87), Expect = 0.002
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 40 AEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILD 99
E L F++ RK + LSGG++ RV +A P ++LD
Sbjct: 114 LEELLEEFHI--THLRKSKASS-------------LSGGERRRVEIARALATNPKFLLLD 158
Query: 100 EPTNNLD---IESIDALADAINEYKGGVIIVSHDER 132
EP +D ++ I + + + GV+I H+ R
Sbjct: 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 37.2 bits (87), Expect = 0.002
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 63 LAGHAHTIKMKDLSGGQKARVALAELTL------NAPDVIILDEPTNNLDIESIDALADA 116
+M+ LSGGQK+ VALA L AP + DE LD + A+A+
Sbjct: 147 NMKQDEQQEMQQLSGGQKSLVALA-LIFAIQKCDPAP-FYLFDEIDAALDAQYRTAVANM 204
Query: 117 INE 119
I E
Sbjct: 205 IKE 207
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 37.8 bits (88), Expect = 0.002
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 46 LFNLPYEKAR--KQLGTFGL-------AGHAHT-IKMK--DLSGGQKARVALAELTLNAP 93
LF P++ R + + L G T I + ++SGGQK RV++A +
Sbjct: 700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 94 DVIILDEPTNNLD 106
DV I D+P + LD
Sbjct: 760 DVYIFDDPLSALD 772
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 37.3 bits (86), Expect = 0.002
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE--YKGGVIIVSHD 130
LSGGQ+ R+ +A P +++LDEPT+ LD S + + + E + +I+V+H+
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 37.5 bits (87), Expect = 0.002
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 70 IKMKDLSGGQKARVALAELTLNA--PDVIILDEPTNNLDIESIDALADAINEY--KGGVI 125
+ ++LS G +ALA L L+ P +++LDEP +L + + ALA+ + + VI
Sbjct: 266 FRDRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVI 325
Query: 126 IVSHDERLIR--DTECTLWV 143
+ +H RL+ + W+
Sbjct: 326 VSTHSPRLLNAVEEHSVFWL 345
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 36.9 bits (85), Expect = 0.002
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD-E 131
SGGQ+ R+ +A P V++LDEPT+ LD S + + + E K I+V+H+ +
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQ 207
Query: 132 RLIRDTECTLWVIENQTIE 150
+ R ++ T +++ IE
Sbjct: 208 QAGRISDQTAFLMNGDLIE 226
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 36.9 bits (85), Expect = 0.003
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA-----INEYKGGVIIVS 128
+LSGGQ+ R+ +A +++ LD+P + LDI D L + + K +++V+
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 129 H 129
H
Sbjct: 200 H 200
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 36.9 bits (86), Expect = 0.003
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHD 130
LSGGQ+ RV +A P ++++DEP LD + D L + E ++ V+HD
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 37.0 bits (86), Expect = 0.003
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVIIVS 128
+ SGG + RV +A L P ++I DEPT LD+ ++ A L + E+ +I+++
Sbjct: 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV-TVQAQIMTLLNELKREFNTAIIMIT 219
Query: 129 HD 130
HD
Sbjct: 220 HD 221
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 36.4 bits (84), Expect = 0.003
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD--AINEYKGGVIIV- 127
K LS G + VA+A L D+ +LDE NL E+ D L + + GG++++
Sbjct: 120 KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLS 179
Query: 128 SHDERLIR 135
SH E I+
Sbjct: 180 SHLESSIK 187
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 36.7 bits (86), Expect = 0.003
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGGQ+ RVA+ + P V + DEP +NLD
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 37.0 bits (86), Expect = 0.003
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKG 122
H ++ LSGG + +V + L P++++LDEPT +D+ E +A+ + KG
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443
Query: 123 GVIIVS 128
+II S
Sbjct: 444 IIIISS 449
Score = 29.7 bits (67), Expect = 0.95
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIV 127
K+ LS Q + +A+ ++I+DEPT++L + ++ L I + K G++ +
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190
Query: 128 SH---------DERLI-RDTECTLWVIENQTIEEIDGD 155
SH DE I RD + W I Q + + D
Sbjct: 191 SHKMEEIFQLCDEITILRDGQ---W-IATQPLAGLTMD 224
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 37.1 bits (86), Expect = 0.004
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGG + + LA++ L P V+ILDEPT +D+
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
Score = 32.5 bits (74), Expect = 0.12
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 47 FNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
+N Y +A+ L L T + D GGQ+ V +A+ ++ILDEP+++L
Sbjct: 114 YNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173
Query: 107 IESIDALADAINEYKG-GV--IIVSH--DE-RLIRDTECTL 141
+ + L D I + K GV + +SH +E + + DT C +
Sbjct: 174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI 214
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 36.5 bits (85), Expect = 0.004
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
LSGGQ+ RVALA + +++LDEP + LD E + ++ E + +++VSH
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 36.3 bits (85), Expect = 0.004
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPT 102
DLSGGQ+ ++A+A + P +++LDEPT
Sbjct: 131 DLSGGQQQQLAIARALVTRPKLLLLDEPT 159
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 36.9 bits (86), Expect = 0.004
Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL- 133
LSGGQ+ R+ +A + P +++ DE T+ LD + +++++ K I+++H RL
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH--RLS 646
Query: 134 -IRDTECTLWVIENQTIEEIDGDFDDYRKELLEALG 168
IR+ + ++V++ + + G +D EL+ G
Sbjct: 647 TIRNAD-RIYVLDAGRVVQ-QGTYD----ELMAREG 676
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 36.1 bits (83), Expect = 0.005
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIE---SIDALADAINEYKGGVIIVSHDE 131
LS GQK RVA+A + ++LDEPT LD + A+ I VII SHD
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196
Query: 132 RLIRDTECTLWVI 144
LI + ++V+
Sbjct: 197 DLIYEISDAVYVL 209
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 36.8 bits (85), Expect = 0.005
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
LSGGQ+AR++LA D+ +LD P +LD+
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
Score = 31.4 bits (71), Expect = 0.26
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
LS G K + LA L+ +++LDEP+ +LD ++ + + + ++ + R+
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413
Query: 135 RDTEC-TLWVIENQTIEEIDGDFDDYRKELLEA 166
EC VIE ++++ +D +K L E
Sbjct: 1414 ALLECQQFLVIEGSSVKQ----YDSIQKLLNET 1442
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 36.0 bits (83), Expect = 0.005
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 75 LSGGQKARV----ALAEL-----TLNAPDVIILDEPTNNLDIES----IDALADAINEYK 121
LSGG+ ARV LA+L P ++LDEPT LD+ +D + ++
Sbjct: 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205
Query: 122 GGVIIVSHDERL 133
GV+ + HD L
Sbjct: 206 LGVLAIVHDPNL 217
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 36.0 bits (84), Expect = 0.006
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 33 LTAEETPAEYLQRLFNLPYEKARKQ-----LGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
LT E+ L+ + RK+ L F + + LSGG++ RV +A
Sbjct: 94 LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYS-LSGGERRRVEIAR 152
Query: 88 LTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDER 132
P I+LDEP +D ++ + I K GV+I H+ R
Sbjct: 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 36.2 bits (84), Expect = 0.006
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 25/139 (17%)
Query: 11 QGELKKNHR---LRIGRFDQHSGEHLTAEET---------PAEYLQRLFNLPYEKARKQL 58
E+KK++R + D H HLT ET P + Y K +
Sbjct: 129 PEEIKKHYRGDVVYNAETDVHFP-HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV 187
Query: 59 --GTFGLAGHAHTIKMKD-----LSGGQKARVALAELTLNAPDVIILDEPTNNLD----I 107
T+GL+ H K+ + +SGG++ RV++AE +L + D T LD +
Sbjct: 188 YMATYGLS-HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATAL 246
Query: 108 ESIDALADAINEYKGGVII 126
E I AL + N ++
Sbjct: 247 EFIRALKTSANILDTTPLV 265
Score = 27.4 bits (61), Expect = 5.8
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 75 LSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIES 109
L+ Q+ R+ + EL ++ LDEPT+ LD ++
Sbjct: 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 36.4 bits (85), Expect = 0.006
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 21/74 (28%)
Query: 75 LSGGQKARVALA-----ELTLNAPDVI-ILDEPT-------NNLDIESIDALADAINEYK 121
LSGG+ R+ LA LT V+ +LDEP+ N IE++ L D N
Sbjct: 482 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNT-- 535
Query: 122 GGVIIVSHDERLIR 135
VI+V HDE IR
Sbjct: 536 --VIVVEHDEDTIR 547
Score = 35.6 bits (83), Expect = 0.010
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 75 LSGGQKARVALA-ELTL--NAPDVIILDEPTNNLDIESIDALADAINE--YKGG-VIIVS 128
LSGG+ RV LA EL+ + ILDEPT L + I L + ++ KG VI++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 129 HDERLIRDTECTLWVIE 145
H+ +I+ W+I+
Sbjct: 883 HNLDVIK---TADWIID 896
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 35.8 bits (82), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGGQ+ R+ +A P+V++LDEP + LD
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 35.4 bits (81), Expect = 0.008
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
DLSGGQ+ R+ +A P V+++DEP LD
Sbjct: 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 35.3 bits (81), Expect = 0.009
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKGGVIIVSH 129
+ LSGG++ RV +A P I+LDEP +D + I + + + + GV+I H
Sbjct: 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
Query: 130 DER 132
+ R
Sbjct: 196 NVR 198
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 35.2 bits (82), Expect = 0.009
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
LS GQ+ + LA L +++LDE T ++D E+ + I E V+ ++H
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAH 196
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 35.0 bits (81), Expect = 0.011
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHD 130
L+ GQ+ R+ +A + P++++LDEP L+ + L + I NE+ V+++ HD
Sbjct: 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD 213
Query: 131 ERLIRDTECTLWVIE------NQTIEEIDGDFDDYRKELLEA 166
+L+ ++V+ N T EEI + D + L EA
Sbjct: 214 MKLVMGISDRIYVVNQGTPLANGTPEEIRNNPDVIKAYLGEA 255
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 35.1 bits (81), Expect = 0.012
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHD 130
LSGG RV +A P ++I DEPT LD+ + I+ L + + +++++HD
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 131 ERLI 134
L+
Sbjct: 214 LALV 217
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 35.7 bits (82), Expect = 0.012
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
+LSGGQK RV+LA + D+ + D+P + +D
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
Score = 31.8 bits (72), Expect = 0.22
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
++LS GQ+ V LA L +++LDE T +D+E+ + + I
Sbjct: 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 35.4 bits (82), Expect = 0.014
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 75 LSGGQKARVALA-ELT--LNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVS 128
LSGG+ R+ LA EL+ + ILDEPT L + I L + + V+++
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 129 HDERLIRDTECTLWVIE 145
H+ +I+ + ++I+
Sbjct: 890 HNLDVIKTAD---YIID 903
Score = 31.9 bits (73), Expect = 0.16
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 24/84 (28%)
Query: 75 LSGGQKARVALA-----ELTLNAPDVI-ILDEPTNNLD-------IESIDALADAINEYK 121
LSGG+ R+ LA LT V+ +LDEP+ L I ++ L D N
Sbjct: 489 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNT-- 542
Query: 122 GGVIIVSHDERLIRDTECTLWVIE 145
+I+V HDE IR + +VI+
Sbjct: 543 --LIVVEHDEDTIRAAD---YVID 561
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 35.2 bits (81), Expect = 0.015
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 75 LSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEYK---GGVIIVS 128
LSGG++ R ALA+ L A ILDEP+ L + L + I + + V++V
Sbjct: 477 LSGGEQERTALAK-HLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVE 535
Query: 129 HDERLI 134
HDE++I
Sbjct: 536 HDEQMI 541
Score = 34.0 bits (78), Expect = 0.038
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 75 LSGGQKARVALAELTLNA---PDVIILDEPTNNLDIESIDALADAINE--YKG-GVIIVS 128
LSGG+ R+ LA L P + +LDEPT L I AL + ++G V+I+
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869
Query: 129 HDERLIR 135
H+ +++
Sbjct: 870 HNMHVVK 876
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 35.0 bits (80), Expect = 0.017
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
++SGGQK RV++A + D+ I D+P + LD
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
Score = 30.7 bits (69), Expect = 0.44
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI--NEYKG-GVIIVSH 129
++ S GQ+ ++LA L +++LDE T ++D+ D+L E+K +++++H
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR-TDSLIQRTIREEFKSCTMLVIAH 1428
Query: 130 DERLIRDTECTLWVIENQTIE 150
I D + L + Q +E
Sbjct: 1429 RLNTIIDCDKILVLSSGQVLE 1449
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 34.3 bits (80), Expect = 0.021
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK-GGVIIV 127
LSGG++ +A+A ++ P +++LDEP+ L + ++ + +AI E + GV I+
Sbjct: 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTIL 186
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 34.1 bits (79), Expect = 0.023
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-LADAI----NEYKGGVIIVSHD 130
SGG + R+ +A + P ++ +DEPT LD+ S+ A L D + E V+IV+HD
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDV-SVQARLLDLLRGLVRELGLAVVIVTHD 211
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 33.8 bits (78), Expect = 0.027
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 71 KMKDLSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIES 109
++ LS Q+ R+ + EL P ++ LDEPT+ LD ++
Sbjct: 105 LLRGLSVEQRKRLTIGVELAAK-PSILFLDEPTSGLDSQA 143
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 33.8 bits (77), Expect = 0.038
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI-ESID 111
KA + G LA + + LSGGQ+ R +A + +++LDEPT LDI ID
Sbjct: 126 KAMQATGITHLADQS----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQID 181
Query: 112 --ALADAINEYKGGVI-IVSHD 130
L +N KG + V HD
Sbjct: 182 LLELLSELNREKGYTLAAVLHD 203
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 33.5 bits (77), Expect = 0.040
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVIIVS 128
+ SGGQ R+ +A + P +II DEP + LD+ SI A L E +I ++
Sbjct: 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDV-SIQAQVVNLLQQLQREMGLSLIFIA 219
Query: 129 HD 130
HD
Sbjct: 220 HD 221
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 33.3 bits (76), Expect = 0.052
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
LS G K + LA L+ +++LDEP+ +LD + + + + ++ + R+
Sbjct: 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIE 198
Query: 135 RDTEC-TLWVIENQTIEEID 153
EC VIE + + D
Sbjct: 199 AMLECQRFLVIEENKVRQYD 218
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 33.1 bits (75), Expect = 0.056
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGGQ+ R+ +A P V+++DEP + LD
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 33.1 bits (76), Expect = 0.062
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES---IDALADAINEYKGGVIIVSHD 130
LSGG + +V +A+ +P ++I+DEPT +D+ + I L +I V+ +S D
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD 462
Score = 26.6 bits (59), Expect = 9.9
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 95 VIILDEPTNNLDIESIDALADAINEY--KG-GVIIVSHDERLIRDTECTLWVIENQTIEE 151
++ILDEPT +L + L I E +G G++ +SH IR + V+ + TI
Sbjct: 161 ILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI-A 219
Query: 152 IDGDFDDYRK-ELLEALGEVVNN 173
+ G D ++++A+
Sbjct: 220 LSGKTADLSTDDIIQAITPAARE 242
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 32.9 bits (75), Expect = 0.10
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 75 LSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDALADAI 117
LS Q+ R+ +A EL N P +I +DEPT+ L DA A AI
Sbjct: 1020 LSTEQRKRLTIAVELVAN-PSIIFMDEPTSGL-----DARAAAI 1057
Score = 30.6 bits (69), Expect = 0.46
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
++ +SGGQK RV E+ + + +DE + LD
Sbjct: 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 32.5 bits (74), Expect = 0.10
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 72 MKDLSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIV 127
+K S G +A++ + +T+N PD++++DE + D D I E+K + V
Sbjct: 141 VKKYSSGMRAKLGFSINITVN-PDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFV 199
Query: 128 SHDERLIRDTECT--LWVIENQTIEEIDGDFDD 158
SH+ +R CT W IE +++ G+ DD
Sbjct: 200 SHNLGQVRQF-CTKIAW-IEGGKLKDY-GELDD 229
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 32.5 bits (74), Expect = 0.10
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
L+ GQK R+ LA + P VII DE +LD+
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDM 182
>gnl|CDD|225111 COG2201, CheB, Chemotaxis response regulator containing a CheY-like
receiver domain and a methylesterase domain [Cell
motility and secretion / Signal transduction
mechanisms].
Length = 350
Score = 32.3 bits (74), Expect = 0.10
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDT 137
G++A + +L PDVI LD +D ++AL + VI+VS
Sbjct: 36 GREAIDKVKKLK---PDVITLDVEMPVMD--GLEALRKIMRLRPLPVIMVSSLTE--EGA 88
Query: 138 ECTLWVIENQTIEEID-------GDFDDYRKELLE 165
E TL +E ++ I D+ + L+E
Sbjct: 89 EATLEALELGAVDFIAKPSGGISLGLDEVAELLIE 123
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 32.1 bits (73), Expect = 0.12
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVI-IVSHDE 131
QK +A+A N P ++I DEPTN +E L +N+ I ++SHD
Sbjct: 164 CQKVMIAIA--LANQPRLLIADEPTN--SMEPTTQAQIFRLLSRLNQNSNTTILLISHDL 219
Query: 132 RLI 134
++I
Sbjct: 220 QMI 222
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 32.0 bits (74), Expect = 0.16
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 15/63 (23%)
Query: 75 LSGGQKARVALA-EL-------TLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGV 124
LSGG+ RV LA EL TL ILDEPT L E I L + ++ KG
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTL-----YILDEPTTGLHFEDIRKLLEVLHRLVDKGNT 885
Query: 125 IIV 127
++V
Sbjct: 886 VVV 888
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 30.9 bits (71), Expect = 0.21
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 75 LSGGQKARVALAELT----LN-APDVIILDEPTNNLDIESIDALADAINEYKGGV--IIV 127
LSGG+KA ALA L + +P +LDE LD +++ A + E+ I++
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFC-VLDEVDAALDDANVERFARLLKEFSKETQFIVI 172
Query: 128 SH 129
+H
Sbjct: 173 TH 174
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 31.3 bits (72), Expect = 0.23
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPT 102
LSGG++ +A+A ++ P +++LDEP+
Sbjct: 136 TLSGGEQQMLAIARALMSRPKLLLLDEPS 164
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 30.7 bits (70), Expect = 0.37
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDE 100
I LS GQK R+AL D+++LDE
Sbjct: 443 GRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.8 bits (70), Expect = 0.38
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 96 IILDEPTNNLDIESIDALADAINEYKG-GV---IIVSHDERLI 134
+ILDEPT LD + L D + + GV ++VSHD+ L+
Sbjct: 815 LILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 30.5 bits (69), Expect = 0.49
Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Query: 75 LSGGQKARVALAE-LTLNAPDVIILDEPTNNLD 106
LSGGQK R+++A L LNA +++ILD+ + +D
Sbjct: 452 LSGGQKQRISIARALLLNA-EILILDDALSAVD 483
>gnl|CDD|176498 cd08555, PI-PLCc_GDPD_SF, Catalytic domain of
phosphoinositide-specific phospholipase C-like
phosphodiesterases superfamily. The PI-PLC-like
phosphodiesterases superfamily represents the catalytic
domains of bacterial phosphatidylinositol-specific
phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic
phosphoinositide-specific phospholipase C (PI-PLC, EC
3.1.4.11), glycerophosphodiester phosphodiesterases
(GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D)
(sphingomyelin phosphodiesterase D, EC 3.1.4.41) from
spider venom, SMases D-like proteins, and phospholipase
D (PLD) from several pathogenic bacteria, as well as
their uncharacterized homologs found in organisms
ranging from bacteria and archaea to metazoans, plants,
and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing
the membrane lipid phosphoinositides to yield two
important second messengers, inositol phosphates and
diacylglycerol (DAG). GP-GDEs play essential roles in
glycerol metabolism and catalyze the hydrolysis of
glycerophosphodiesters to sn-glycerol-3-phosphate (G3P)
and the corresponding alcohols that are major sources of
carbon and phosphate. Both, PI-PLCs and GP-GDEs, can
hydrolyze the 3'-5' phosphodiester bonds in different
substrates, and utilize a similar mechanism of general
base and acid catalysis with conserved histidine
residues, which consists of two steps, a phosphotransfer
and a phosphodiesterase reaction. This superfamily also
includes Neurospora crassa ankyrin repeat protein NUC-2
and its Saccharomyces cerevisiae counterpart, Phosphate
system positive regulatory protein PHO81,
glycerophosphodiester phosphodiesterase (GP-GDE)-like
protein SHV3 and SHV3-like proteins (SVLs). The residues
essential for enzyme activities and metal binding are
not conserved in these sequence homologs, which might
suggest that the function of catalytic domains in these
proteins might be distinct from those in typical
PLC-like phosphodiesterases.
Length = 179
Score = 29.7 bits (67), Expect = 0.62
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 120 YKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKE----LLEALGEVVNNPS 175
K G ++V H L R T L + +E I D+ LE +
Sbjct: 37 TKDGELVVYHGPTLDRTTAGILPPTLEEVLELI-ADYLKNPDYTIILSLEIKQDSPEYDE 95
Query: 176 IVANMA 181
+A +
Sbjct: 96 FLAKVL 101
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 30.2 bits (68), Expect = 0.63
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 30 GEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELT 89
E + + ++LQRL E A K + + LS GQK R+AL
Sbjct: 415 PEGKASPQLIEKWLQRL-----ELAHK------TSLNDGRFSNLKLSTGQKKRLALLLAL 463
Query: 90 LNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHDER 132
L D+++LDE + D E L + E + +SHD+
Sbjct: 464 LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH 510
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 29.9 bits (68), Expect = 0.66
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 22/64 (34%)
Query: 91 NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIE 150
NAP +I +DE DA+ +G + +DER E TL NQ +
Sbjct: 146 NAPCIIFIDE-------------IDAVGRQRGAGLGGGNDER-----EQTL----NQLLV 183
Query: 151 EIDG 154
E+DG
Sbjct: 184 EMDG 187
>gnl|CDD|219281 pfam07059, DUF1336, Protein of unknown function (DUF1336). This
family represents the C-terminus (approximately 250
residues) of a number of hypothetical plant proteins of
unknown function.
Length = 215
Score = 29.6 bits (67), Expect = 0.67
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 152 IDGDFDDYRKELLEALGEVVNNPSIV 177
+DGD D +R E L+ + +V IV
Sbjct: 107 VDGDEDAFRNERLKIIPRIVKGSWIV 132
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 29.3 bits (66), Expect = 0.96
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 97 ILDEPTNNLD-IESIDALADAINEYKGG--VIIVSHDERLIRDTECTLWVIENQTIEEID 153
ILDEP L ++ LA + G +II +H L+ ++ I IEE
Sbjct: 151 ILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIEER- 209
Query: 154 GDFDDYRKELLEALGEVVNNPS 175
DF++ E AL + +N+P
Sbjct: 210 -DFEE--TEHFRALRDFLNDPE 228
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 29.1 bits (66), Expect = 1.0
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 72 MKDLSGGQKARVALAEL----TLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---V 124
M +LSGG+K ALA L + +LDE LD ++ +A I E G
Sbjct: 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQF 212
Query: 125 IIVSHDERLIRDTECTLWVIENQ 147
I++S E + + V +Q
Sbjct: 213 IVISLKEEFFSKADALVGVYRDQ 235
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 28.8 bits (65), Expect = 1.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 75 LSGGQKARVALAEL----TLNAPDVIILDEPTNNLDIESIDALADAINE 119
LSGG+K+ ALA + + +LDE LD + ++D I E
Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKE 143
>gnl|CDD|176515 cd08573, GDPD_GDE1, Glycerophosphodiester phosphodiesterase domain
of mammalian glycerophosphodiester phosphodiesterase
GDE1 and similar proteins. This subfamily corresponds
to the glycerophosphodiester phosphodiesterase domain
(GDPD) present in mammalian GDE1 (also known as MIR16,
membrane interacting protein of RGS16) and their
metazoan homologs. GDE1 is widely expressed in mammalian
tissues, including the heart, brain, liver, and kidney.
It shows sequence homology to bacterial
glycerophosphodiester phosphodiesterases (GP-GDEs, EC
3.1.4.46), which catalyzes the hydrolysis of various
glycerophosphodiesters, and produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. GDE1 has been characterized as GPI-GDE (EC
3.1.4.44) that selectively hydrolyzes extracellular
glycerophosphoinositol (GPI) to generate glycerol
phosphate and inositol. It functions as an integral
membrane-bound glycoprotein interacting with regulator
of G protein signaling protein RGS16, and is modulated
by G protein-coupled receptor (GPCR) signaling. In
addition, GDE1 may interact with PRA1 domain family,
member 2 (PRAF2, also known as JM4), which is an
interacting protein of the G protein-coupled chemokine
receptor CCR5. The catalytic activity, which is
dependent on the integrity of the GDPD domain, is
required for GDE1 cellular function.
Length = 258
Score = 28.8 bits (65), Expect = 1.4
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 121 KGGVIIVSHDERLIRDTECTLWVIENQTIEEI--------DGDFDDYRKE----LLEALG 168
K GV ++ HD+ + R T+ T ++ T EE+ + E L EA+
Sbjct: 38 KDGVPVLMHDDTVDRTTDGTG-LVAELTWEELRKLNAAAKHRLSSRFPGEKIPTLEEAVK 96
Query: 169 EVVNN 173
E + N
Sbjct: 97 ECLEN 101
>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic
SMC2 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 251
Score = 28.8 bits (65), Expect = 1.4
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 74 DLSGGQKARVAL----AELTLNAPDVIILDEPTNNLDIESIDALADAI-NEYKGG-VIIV 127
+LSGGQ++ VAL A L + ILDE LD+ + I +KG I+V
Sbjct: 166 ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVV 225
Query: 128 SHDE 131
S E
Sbjct: 226 SLKE 229
>gnl|CDD|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase
domain of Staphylococcus aureus and similar proteins.
This subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in
uncharacterized glycerophosphodiester phosphodiesterase
(GP-GDE, EC 3.1.4.46) from Staphylococcus aureus,
Bacillus subtilis and similar proteins. Members in this
family show very high sequence similarity to Escherichia
coli periplasmic phosphodiesterase GlpQ, which catalyzes
the Ca2+-dependent degradation of periplasmic
glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols.
Length = 256
Score = 28.8 bits (65), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 121 KGGVIIVSHDERLIRDT--ECTLWVIENQTIEEI 152
K GV++ HDE L R T E V ++ T+ EI
Sbjct: 40 KDGVLVAMHDETLDRTTNIERPGPV-KDYTLAEI 72
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 28.6 bits (64), Expect = 1.9
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES---IDALADAINEYKGGVI-IVSH 129
+L+ G+ +V +A N P ++I DEPTN ++ + I L +N+ I ++SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 130 DERLI 134
D +++
Sbjct: 218 DLQML 222
>gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose
reductase and related proteins, extended (e) SDRs.
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended
SDR, synthesizes dTDP-L-rhamnose from
alpha-D-glucose-1-phosphate, providing the precursor of
L-rhamnose, an essential cell wall component of many
pathogenic bacteria. This subgroup has the
characteristic active site tetrad and NADP-binding
motif. This subgroup also contains human MAT2B, the
regulatory subunit of methionine adenosyltransferase
(MAT); MAT catalyzes S-adenosylmethionine synthesis. The
human gene encoding MAT2B encodes two major splicing
variants which are induced in human cell liver cancer
and regulate HuR, an mRNA-binding protein which
stabilizes the mRNA of several cyclins, to affect cell
proliferation. Both MAT2B variants include this extended
SDR domain. Extended SDRs are distinct from classical
SDRs. In addition to the Rossmann fold (alpha/beta
folding pattern with a central beta-sheet) core region
typical of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 280
Score = 28.4 bits (64), Expect = 2.0
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 78 GQKARVALAELTLNAPDVIILD---EPTNNLDIESIDALADAINEYKGGVII 126
G R + L +VI LD+ DA+ +AI +YK VII
Sbjct: 9 GMLGRALVRLLKERGYEVIGTGRSRASLFKLDLTDPDAVEEAIRDYKPDVII 60
>gnl|CDD|238257 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases. Nucleoside
hydrolases cleave the N-glycosidic bond in nucleosides
generating ribose and the respective base. These enzymes
vary in their substrate specificity. This group
contains eukaryotic, bacterial and archeal proteins
similar to the inosine-uridine preferring nucleoside
hydrolase from Crithidia fasciculata, the
xanthosine-inosine-uridine-adenosine-preferring
nucleoside hydrolase RihC from Salmonella enterica
serovar Typhimurium, the purine-specific
inosine-adenosine-guanosine-preferring nucleoside
hydrolase from Trypanosoma vivax and,
pyrimidine-specific uridine-cytidine preferring
nucleoside hydrolases such as URH1 from Saccharomyces
cerevisiae, RihA and RihB from Escherichia coli.
Nucleoside hydrolases are of interest as a target for
antiprotozoan drugs as, no nucleoside hydrolase activity
or genes encoding these enzymes have been detected in
humans and, parasitic protozoans lack de novo purine
synthesis relying on nucleoside hydrolase to scavenge
purine and/or pyrimidines from the environment. .
Length = 295
Score = 28.1 bits (63), Expect = 2.3
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 96 IILDEPTNNLDIESIDALADAINEYKGGVIIV 127
+ + D E++ L D I +Y + IV
Sbjct: 86 LPIPPIIEADDPEAVQLLIDLIRKYPDEITIV 117
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 28.4 bits (64), Expect = 2.4
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 23/80 (28%)
Query: 98 LDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD------------TECT--LWV 143
L +P+ ++++ESI L ++IN+ I+ LIR+ + LW+
Sbjct: 347 LKDPSTSIELESITDLIESIND------IIDAINELIREHNEKIDNLKKEKNKAKKKLWL 400
Query: 144 IENQTIEEIDGDFDDYRKEL 163
+ E+ D D Y+KE
Sbjct: 401 HL---VAELKEDIDAYQKEK 417
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 28.4 bits (63), Expect = 2.5
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKD--------LSGGQKARVALAELTLNAPDVIILDEPTN 103
+ A++ L +A +K++D LS GQ+ R+AL L +++ DE
Sbjct: 443 DNAQQYLQRLEIA---DKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA 499
Query: 104 NLD-----IESIDALADAINEYKGGVIIVSHDER 132
+ D + L D + K +II+SHD++
Sbjct: 500 DQDPAFKRFFYEELLPDLKRQGK-TIIIISHDDQ 532
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 28.1 bits (63), Expect = 2.8
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 75 LSGGQKARVALAEL----TLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV--IIVS 128
LSGG+KA ALA L + ILDE LD +++ A+ + E+ I+++
Sbjct: 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVIT 1149
Query: 129 H 129
H
Sbjct: 1150 H 1150
>gnl|CDD|181691 PRK09196, PRK09196, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 347
Score = 27.6 bits (62), Expect = 3.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 37 ETPAEYLQRLFNLPYEKARKQLGT-----FGLAGHAHTIKMKDLS 76
E P+E+ R + P +A K++ FG AG A IK L
Sbjct: 294 ENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAGQASKIKPISLE 338
>gnl|CDD|225344 COG2730, BglC, Endoglucanase [Carbohydrate transport and
metabolism].
Length = 407
Score = 27.8 bits (62), Expect = 3.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 89 TLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSH 129
+N P+ I+ E N D E+ D + +AI +I
Sbjct: 187 LINEPNGIVTSETWNGGDDEAYDVVRNAILSNAPHWLIRVG 227
>gnl|CDD|176511 cd08568, GDPD_TmGDE_like, Glycerophosphodiester phosphodiesterase
domain of Thermotoga maritime and similar proteins.
This subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in Thermotoga
maritime glycerophosphodiester phosphodiesterase (TmGDE,
EC 3.1.4.46) and its uncharacterized homologs. Members
in this family show high sequence similarity to
Escherichia coli GP-GDE, which catalyzes the degradation
of glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. TmGDE exists as a monomer that might be the
biologically relevant form.
Length = 226
Score = 27.6 bits (62), Expect = 3.5
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 101 PTNNLD--IESIDALADAINEY-----KGGVIIVSHDERLIRDTECTLWVIENQTIEEI 152
P N L+ ++I+ AD + E K G ++V HDE L R L ++ T +E+
Sbjct: 13 PENTLEAFKKAIEYGADGV-ELDVWLTKDGKLVVLHDENLKRVGGVDL-KVKELTYKEL 69
>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 27.8 bits (62), Expect = 3.7
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 101 PTNNLDIESIDALADAINEYKGGV-IIVSHDERLIRDT 137
P + D++++DAL + + GGV I++++ R IR
Sbjct: 95 PCDLSDLDAVDALVADVEKRIGGVDILINNAGRSIRRP 132
>gnl|CDD|216401 pfam01267, F-actin_cap_A, F-actin capping protein alpha subunit.
Length = 269
Score = 27.6 bits (62), Expect = 3.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 147 QTIEEIDGDFDDYRKELLEALGEVVNN 173
++ E + + YRK L +AL V +
Sbjct: 97 ESYELESEELELYRKSLDKALSAYVKD 123
>gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope
biogenesis, outer membrane].
Length = 281
Score = 27.6 bits (62), Expect = 3.8
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 72 MKDL---SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
MK L + GQ L +VI D LDI DA+ + I E + V+I
Sbjct: 1 MKILITGANGQLGT-ELRRALPGEFEVIATDRA--ELDITDPDAVLEVIRETRPDVVI 55
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model
represents HrpA, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria
and a few high-GC Gram-positive bacteria. HrpA is about
1300 amino acids long, while its paralog HrpB, also
uncharacterized, is about 800 amino acids long. Related
characterized eukarotic proteins are RNA helicases
associated with pre-mRNA processing [Unknown function,
Enzymes of unknown specificity].
Length = 1283
Score = 27.8 bits (62), Expect = 4.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 98 LDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT 137
L E + D++ ++A+ DA++E G ++I ER IRD
Sbjct: 252 LVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDA 295
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 27.4 bits (61), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 154 GDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
G FD+ R+ +AL N PSI N+ +
Sbjct: 148 GRFDEARRAYRQALELAPNEPSIANNLGMSL 178
>gnl|CDD|239116 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of
nucleoside hydrolases similar to Corynebacterium
ammoniagenes Purine/pyrimidine nucleoside hydrolase
(pnhB). Nucleoside hydrolases cleave the N-glycosidic
bond in nucleosides generating ribose and the respective
base. These enzymes vary in their substrate specificity.
.
Length = 304
Score = 27.2 bits (61), Expect = 4.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 96 IILDEPTNNLDIES-IDALADAINEYKGGVIIV 127
+ L P + ES D L + NEY G + +V
Sbjct: 88 VELPAPPRQPEDESAADFLIELANEYPGELTLV 120
>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional.
Length = 316
Score = 27.3 bits (61), Expect = 4.8
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 146 NQTIEEIDGDFDDYRKELLEALGEVVNNPSIVA 178
D+ + +L + L V PSI+
Sbjct: 248 RALAPNYANDYASFVGKLYDELYPQVTPPSIIR 280
>gnl|CDD|217123 pfam02585, PIG-L, GlcNAc-PI de-N-acetylase. Members of this family
are related to PIG-L an
N-acetylglucosaminylphosphatidylinositol de-N-acetylase
(EC:3.5.1.89) that catalyzes the second step in GPI
biosynthesis.
Length = 115
Score = 26.5 bits (59), Expect = 5.2
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 60 TFGLAGHAHTIKMKDLSGGQKARVALAEL-----TLNAPDVIILDEPTNNLD----IESI 110
T G AG L + + E L VI LD P L E +
Sbjct: 34 TDGEAGSNRLG----LEEEELGAIRRREARAAAEILGVERVIFLDLPDGGLREWDLEELL 89
Query: 111 DALADAINEYKGGVIIVSHDE 131
ALA I E + V++
Sbjct: 90 AALARLIREIRPDVVLTHDPG 110
>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and
(R)-2-Hydroxyglutarate Dehydrogenase-like proteins,
NAD-binding and catalytic domains. This group contains
various putative dehydrogenases related to D-lactate
dehydrogenase (LDH), (R)-2-hydroxyglutarate
dehydrogenase (HGDH), and related enzymes, members of
the 2-hydroxyacid dehydrogenases family. LDH catalyzes
the interconversion of pyruvate and lactate, and HGDH
catalyzes the NAD-dependent reduction of 2-oxoglutarate
to (R)-2-hydroxyglutarate. Despite often low sequence
identity within this 2-hydroxyacid dehydrogenase family,
these proteins typically have a characteristic
arrangement of 2 similar subdomains of the alpha/beta
Rossmann fold NAD+ binding form. The NAD+ binding domain
is inserted within the linear sequence of the mostly
N-terminal catalytic domain, which has a similar domain
structure to the internal NAD binding domain.
Structurally, these domains are connected by extended
alpha helices and create a cleft in which NAD is bound,
primarily to the C-terminal portion of the 2nd
(internal) domain.
Length = 322
Score = 27.2 bits (61), Expect = 5.6
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 83 VALAELTLNAPDVIILDEP----TNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE 138
V L L + D+I L P T +L I+ ++I + K GVII++ + DTE
Sbjct: 187 VDLDTLYKES-DIITLHTPLTEETYHL----INK--ESIAKMKDGVIIINTARGELIDTE 239
Query: 139 CTLWVIENQTI 149
+ +E+ I
Sbjct: 240 ALIEGLESGKI 250
>gnl|CDD|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase
domain of Agrobacterium tumefaciens and similar
proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in Agrobacterium tumefaciens
glycerophosphodiester phosphodiesterase (AtGDE, EC
3.1.4.46) and its uncharacterized eukaryotic homolgoues.
Members in this family shows high sequence similarity to
Escherichia coli GP-GDE, which catalyzes the degradation
of glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. AtGDE exists as a hexamer that is a trimer of
dimers, which is unique among current known GDPD family
members. However, it remains unclear if the hexamer
plays a physiological role in AtGDE enzymatic function.
Length = 240
Score = 26.9 bits (60), Expect = 5.8
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEI--------DGDFDDYR----KELLEAL 167
GV+++ HD+ L R T + + T+ EI DG+ D + +E L
Sbjct: 42 GVLVLMHDDTLDRTTNGK-GKVSDLTLAEIRKLRLKDGDGEVTDEKVPTLEEALAWA 97
>gnl|CDD|214383 CHL00168, pbsA, heme oxygenase; Provisional.
Length = 238
Score = 26.7 bits (59), Expect = 6.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 42 YLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQ 79
Y+ R+ + +K L HA+T + DLSGGQ
Sbjct: 105 YVDRIHKISAKKPEL------LIAHAYTRYLGDLSGGQ 136
>gnl|CDD|216960 pfam02283, CobU, Cobinamide kinase / cobinamide phosphate
guanyltransferase. This family is composed of a group
of bifunctional cobalamin biosynthesis enzymes which
display cobinamide kinase and cobinamide phosphate
guanyltransferase activity. The crystal structure of the
enzyme reveals the molecule to be a trimer with a
propeller-like shape.
Length = 165
Score = 26.6 bits (60), Expect = 6.7
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 21/79 (26%)
Query: 107 IESIDALADAINEYKGGVIIVSHDERLIRDTEC-TLWVIENQTIE-EIDGDFDDYRKELL 164
IE LA+A+ G V++V +C TLW+ N + + + ELL
Sbjct: 57 IEEPLDLAEALRALPGDVVLV----------DCLTLWL-TNLLFANDDEEAIEAEVDELL 105
Query: 165 EAL----GEVVNNPSIVAN 179
AL VV +V+N
Sbjct: 106 AALKARPAPVV----LVSN 120
>gnl|CDD|234450 TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein,
SusC/RagA family. This model describes a distinctive
clade among the TonB-linked outer membrane proteins
(OMP). Members of this family are restricted to the
Bacteriodetes lineage (except for Gemmatimonas
aurantiaca T-27 from the novel phylum Gemmatimonadetes)
and occur in high copy numbers, with over 100 members
from Bacteroides thetaiotaomicron VPI-5482 alone.
Published descriptions of members of this family are
available for RagA from Porphyromonas gingivalis, SusC
from Bacteroides thetaiotaomicron, and OmpW from
Bacteroides caccae. Members form pairs with members of
the SusD/RagB family (pfam07980). Transporter complexes
including these outer membrane proteins are likely to
import large degradation products of proteins (e.g.
RagA) or carbohydrates (e.g. SusC) as nutrients, rather
than siderophores [Transport and binding proteins,
Unknown substrate].
Length = 982
Score = 26.8 bits (60), Expect = 7.8
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 13/50 (26%)
Query: 91 NAPDVII----LDEPTNNL---DIESIDALADA----INEYKG--GVIIV 127
N+P +I D ++L DIESI L DA I +G GVI++
Sbjct: 152 NSPLYVIDGVPRDNGLSDLNPEDIESISVLKDASATAIYGSRGANGVILI 201
>gnl|CDD|236430 PRK09249, PRK09249, coproporphyrinogen III oxidase; Provisional.
Length = 453
Score = 26.6 bits (60), Expect = 8.1
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 23/75 (30%)
Query: 110 IDALADAINE-----YKGGVIIVSHDERLIRDTECTLWVIEN---------QTIEEIDG- 154
+ A A++ +G ++ D+RL R VIE IE G
Sbjct: 341 LKAYYAAVDAGRLPTARG--HALTADDRLRR------DVIEQLMCNFELDFAAIEAAFGI 392
Query: 155 DFDDYRKELLEALGE 169
DF +Y E LE L
Sbjct: 393 DFAEYFAEELERLAP 407
>gnl|CDD|222098 pfam13394, Fer4_14, 4Fe-4S single cluster domain.
Length = 116
Score = 25.6 bits (57), Expect = 8.2
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 15/66 (22%)
Query: 100 EPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY 159
EP L+ E++ L + E G I W+ T+EE G +
Sbjct: 57 EPLLPLNQEALLPLIKRLKEEGPGKDI---------------WLETGYTLEEPFGIDWEE 101
Query: 160 RKELLE 165
++ELL
Sbjct: 102 QQELLS 107
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 26.4 bits (58), Expect = 9.1
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 20/87 (22%)
Query: 41 EYLQR------LFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPD 94
++ +R LF +E+ ++ GT +SGG++ +A+ ++ P
Sbjct: 112 QFQERIKWVYELFPRLHERRIQRAGT--------------MSGGEQQMLAIGRALMSQPR 157
Query: 95 VIILDEPTNNLDIESIDALADAINEYK 121
+++LDEP+ L I + D I + +
Sbjct: 158 LLLLDEPSLGLAPIIIQQIFDTIEQLR 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,919,495
Number of extensions: 972270
Number of successful extensions: 1902
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1806
Number of HSP's successfully gapped: 456
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.5 bits)