RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11928
(184 letters)
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 146 bits (370), Expect = 3e-41
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 15 KKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAG-HAHTIKM 72
N + G + + + + F L ++ + GL ++
Sbjct: 840 VDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDER 132
+ LSGGQK ++ LA T P +I+LDEPTN LD +S+ AL+ A+ E++GGVII++H
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959
Query: 133 LIRDTECTLWVIENQTIEEIDGDFD 157
++ +W +++ + ++
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHNWV 984
Score = 108 bits (271), Expect = 5e-28
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 19 RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78
R + + ++ + +++ E + +L FG + + LSGG
Sbjct: 494 ECRTVYVEHDI-DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGG 552
Query: 79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE 138
K ++ALA L D+++LDEPTN+LD ++ L + +N I +SHD + D
Sbjct: 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL-DNV 611
Query: 139 CT-LWVIENQTIEEIDGDFDDYRKELLEAL 167
C + E + + G+F ++ K+ A
Sbjct: 612 CEYIINYEGLKLRKYKGNFTEFVKKCPAAK 641
Score = 56.2 bits (135), Expect = 7e-10
Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 8/141 (5%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSGEHL--TAEETPAEYLQRLFNL--PYEKARKQLGTF 61
+L P GE+ + RI QH+ H+ ++TP+EY+Q F E +
Sbjct: 722 ELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQI 781
Query: 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAP----DVIILDEPTNNLDIESIDALADAI 117
K+ + G + + + L + E +
Sbjct: 782 NENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVD 841
Query: 118 NEYKGGVIIVSHDERLIRDTE 138
N + +V +++ + +
Sbjct: 842 NAWIPRGELVESHSKMVAEVD 862
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 80.8 bits (200), Expect = 2e-18
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI---NEYKGGVIIV 127
++ LSGG+ RVA+A L DEP++ LDI +A I V++V
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 128 SHD 130
HD
Sbjct: 285 EHD 287
Score = 71.2 bits (175), Expect = 5e-15
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVII 126
++DLSGG+ RVA+A L D+ +LDEP+ LD+E A+ + + + ++
Sbjct: 468 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 127 VSHDERLIRDTECT-LWVIENQTIEE--IDGDFD--DYRKELLEALG 168
V HD +I L V E + + L ++G
Sbjct: 528 VEHDVLMIDYV-SDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVG 573
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 72.2 bits (178), Expect = 3e-16
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 16/136 (11%)
Query: 7 LQPQQGELK------KNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR--K 56
L+P +GE+ + +I + ++ E+ + + L+ + K
Sbjct: 59 LKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDY-LKAVASLYGVKVNKNEIMD 117
Query: 57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA 116
L + + K+ +LS G RV LA L ++ +LD+P +D +S + +
Sbjct: 118 ALESVEVLDLKK--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS 175
Query: 117 INEY---KGGVIIVSH 129
I E KG VII S
Sbjct: 176 ILEILKEKGIVIISSR 191
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 72.6 bits (179), Expect = 5e-16
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 19 RLRIGRFDQHSG--EHLTAEETPAEYLQ---RLFNLPYEKARKQ----LGTFGLAGHAHT 69
R I + +G ++ E YL+ + + + GL
Sbjct: 87 RKLISYLPEEAGAYRNMQGIE----YLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VII 126
++ S G ++ +A + P + ILDEPT+ LD+ + + + + +++
Sbjct: 143 -RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201
Query: 127 VSH 129
SH
Sbjct: 202 SSH 204
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 73.9 bits (182), Expect = 6e-16
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVS 128
LSGG R+ +A L DV I D+P++ LD+ +A AI E VI+V
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194
Query: 129 HD 130
HD
Sbjct: 195 HD 196
Score = 70.8 bits (174), Expect = 7e-15
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVS 128
DLSGG+ ++ +A D+ +LD+P++ LD+E A+ E K I+
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 129 HDERLIRDTECT-LWVIENQTIEEIDGD--------FDDYRKEL 163
HD + + V + + + +++ +EL
Sbjct: 444 HDLSIHDYI-ADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 71.9 bits (177), Expect = 2e-15
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
LSGG+ RVA+A L DEP++ LDI A AI V++V HD
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Score = 68.5 bits (168), Expect = 4e-14
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVS 128
+LSGG+ RVA+A L D+ +LDEP+ LD+E A+ + + + ++V
Sbjct: 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459
Query: 129 HDERLIRDTECT-LWVIENQTIEEIDG----DFDDYRKELLEALG 168
HD +I L V E + + + L ++G
Sbjct: 460 HDVLMIDYV-SDRLMVFEGEPGKYGRALPPMGMREGMNRFLASIG 503
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 70.1 bits (172), Expect = 5e-15
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 13 ELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKM 72
+++ R + +T + + L L + + L L K+
Sbjct: 69 KIRNYIRYSTNLP-EAYEIGVTVNDIVY-LYEELKGLDRDLFLEMLKALKLGEEILRRKL 126
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
LS GQ V + + P+++ LDEP N+D ++ I EY I+V+H+
Sbjct: 127 YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHE 184
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 68.1 bits (167), Expect = 6e-14
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
LSGG+ R A+ + DV + DEP++ LD++ A I VI V HD
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Score = 65.4 bits (160), Expect = 5e-13
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS 128
+ LSGG+ RVA+ D+ ++DEP+ LD E + I + K IV
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525
Query: 129 HDERLIRDTECT-LWVIENQTIEEI 152
HD + + V E +
Sbjct: 526 HDFIMATYL-ADKVIVFEGIPSKNA 549
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 61.8 bits (151), Expect = 3e-12
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES-- 109
++A + L L K LSGGQ+ RVA+A N P +I+ D+PT LD ++
Sbjct: 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
Query: 110 -IDALADAINEYKGG-VIIVSHDE-------RLIR 135
I L +NE G V++V+HD R+I
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIY 217
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 61.4 bits (150), Expect = 5e-12
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALA-------ELTLNAPDVIILDEPTNN 104
L G + LSGG+ RV LA A +++LDEP N+
Sbjct: 108 NDVAGALALDDKLGRSTN----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 105 LDI---ESIDALADAINEYKGGVIIVSHD 130
LD+ ++D + A+++ +++ SHD
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSHD 192
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 61.5 bits (150), Expect = 5e-12
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 74 DLSGGQKARVALAE-LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSH 129
LSGG+K RVA+A + PD++ILDEP LD E L + ++K VI++SH
Sbjct: 138 FLSGGEKRRVAIASVIVHE-PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196
Query: 130 D 130
D
Sbjct: 197 D 197
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 60.2 bits (147), Expect = 1e-11
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES-- 109
E+ L GL K +LSGG++ RVA+A N P ++ DEPT NLD +
Sbjct: 119 ERGEYLLSELGLGDKLSR-KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 110 -IDALADAINEYKGGVIIVSHDERL 133
+ + INE +++V+H+ L
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHEREL 202
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 60.6 bits (148), Expect = 1e-11
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
++ L G+ LS GQK RVA+A + + P V+ILDEPT LD +
Sbjct: 122 KRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180
Query: 112 ALADAIN----EYKGGVIIVSHD 130
+ + E +II +HD
Sbjct: 181 EIMKLLVEMQKELGITIIIATHD 203
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 60.4 bits (146), Expect = 2e-11
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 35 AEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALA------EL 88
A E AE+ + ++ +A + + + LSGG++ + LA
Sbjct: 209 ASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLY 268
Query: 89 TLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDERLIR 135
++ILDEPT LD E L + Y VI+VSHDE L
Sbjct: 269 LAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 318
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 59.5 bits (145), Expect = 3e-11
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI 110
+A + L G++ A + LS G+K RV +A + P V+ILDEP LD +
Sbjct: 139 RNEAHQLLKLVGMSAKAQQ-YIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIAR 197
Query: 111 DALADAINEYKG-----GVIIVSHD 130
++L ++ +I V+H
Sbjct: 198 ESLLSILDSLSDSYPTLAMIYVTHF 222
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 55.7 bits (135), Expect = 6e-10
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARV----ALAELTLNAPDVIILDEPTNNLD 106
Y+ A + L L A + LSGGQ+ + A+A + +I+LDEPT+ LD
Sbjct: 106 YQVAMQALDYLNLTHLAKR-EFTSLSGGQRQLILIARAIA----SECKLILLDEPTSALD 160
Query: 107 ----IESIDALADAINEYKGGVIIVSHD 130
+ L D V+ +H
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 54.9 bits (132), Expect = 2e-09
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 9/130 (6%)
Query: 13 ELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKM 72
++++ + ++ E + + + +
Sbjct: 219 KVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTI 278
Query: 73 KDLSGGQKARVALAE-------LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG-- 123
+LSGG++ VAL+ L N + IILDEPT LD LA+ + K
Sbjct: 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQ 338
Query: 124 VIIVSHDERL 133
+II++H L
Sbjct: 339 MIIITHHREL 348
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 52.4 bits (126), Expect = 3e-09
Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 14/116 (12%)
Query: 33 LTAEETPAEYLQRLFNLPYEKAR----KQLGTFGLAGHAHTIKMKDLSGGQKARVALA-- 86
E +E Y + + + + LSGG++ + LA
Sbjct: 13 KIGELA-SEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFR 71
Query: 87 ----ELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDERLIR 135
++ILDEPT LD E L + Y VI+VSHDE L
Sbjct: 72 LAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 127
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 54.3 bits (131), Expect = 3e-09
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A + P +++LDE T+ LD ES + A+++ + G I+++H R
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH--R 584
Query: 133 L--IRD 136
L +R+
Sbjct: 585 LSTVRN 590
Score = 53.5 bits (129), Expect = 6e-09
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A + P +++LDE T+ LD ES + +A+++ + G I+++H R
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH--R 1229
Query: 133 L--IRD 136
L I++
Sbjct: 1230 LSTIQN 1235
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 53.0 bits (128), Expect = 6e-09
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGG++ R+A+A L P ++I DE T++LD ++ A+ + + +II++H R
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH--R 213
Query: 133 L--IRDTECTLWVIENQTIEE 151
L I E + ++ I E
Sbjct: 214 LSTISSAESII-LLNKGKIVE 233
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 53.0 bits (128), Expect = 7e-09
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGG+K RVA+A L AP +I+LDE T+ LD + A+ ++ + I+V+H R
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH--R 248
Query: 133 L--IRDTECTLWVIENQTIEE 151
L + + + L VI++ I E
Sbjct: 249 LSTVVNADQIL-VIKDGCIVE 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 51.7 bits (125), Expect = 1e-08
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A +N P ++I DE T+ LD ES + +++ G VII++H R
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH--R 203
Query: 133 L--IRDTECTLWVIENQTIEE 151
L +++ + + V+E I E
Sbjct: 204 LSTVKNADRII-VMEKGKIVE 223
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 51.0 bits (123), Expect = 2e-08
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE-LTLNAPDVIILDEPTNNLDIE 108
E+A K L G+ A LSGGQ+ RV++A L + PDV++ DEPT+ LD E
Sbjct: 131 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME-PDVLLFDEPTSALDPE 187
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 50.9 bits (123), Expect = 3e-08
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
+SGGQ+ R+A+A L P +++LDE T +LD ES + A++ G ++++H R
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH--R 197
Query: 133 L--IRDTECTLWVIENQTIEE 151
L I D + IE I
Sbjct: 198 LSTIVDADKIY-FIEKGQITG 217
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 49.9 bits (120), Expect = 5e-08
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
+ R+ G+A K LSGG++ RVALA + P +++LDEP + +D
Sbjct: 105 RRVREMAEKLGIAHLLDR-KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 50.3 bits (121), Expect = 6e-08
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+A+A L P +++LDE T+ LD E+ + +A++ G V++++H R
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH--R 541
Query: 133 L--IRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
L I++ V++ I E G + ELL
Sbjct: 542 LSTIKNANMVA-VLDQGKITEY-GKHE----ELLS 570
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 48.4 bits (116), Expect = 2e-07
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 52 EKARKQLGTFGLAGHAHTIKM-KDLSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIES 109
KA + L GL AH LSGGQ RVA+A L + P +++ DEPT+ LD E
Sbjct: 138 AKAMELLDKVGLKDKAH--AYPDSLSGGQAQRVAIARALAME-PKIMLFDEPTSALDPEM 194
Query: 110 I 110
+
Sbjct: 195 V 195
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 48.3 bits (115), Expect = 3e-07
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 14/142 (9%)
Query: 1 MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGT 60
L+ + R GR + + A + + EK +
Sbjct: 211 YNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKD 270
Query: 61 FGLAGHAHTIKMKDLSGGQKARV------ALAELTLNAPDVIILDEPTNNLDIESIDALA 114
+G+ A LSGG++A + +LAE+ D +DE ++LD E+ + +A
Sbjct: 271 WGIERPARG-----LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIA 325
Query: 115 DAINEYKGG---VIIVSHDERL 133
+ E + ++ ++HD
Sbjct: 326 SVLKELERLNKVIVFITHDREF 347
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 47.6 bits (114), Expect = 6e-07
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
++ + LSGG++ RVALA + P +++LDEP + LD
Sbjct: 106 KRVLDTARDLKIEHLLDR-NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 46.8 bits (112), Expect = 7e-07
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
LSGGQ+ VALA + P ++ILD T+ LD + L ++ V++++
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ- 215
Query: 131 ERL--IRDTECTLWVIENQTIEE 151
+L L ++ ++ E
Sbjct: 216 -QLSLAERAHHIL-FLKEGSVCE 236
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 45.7 bits (109), Expect = 2e-06
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGGQ+ RVALA P V++ DEP +D
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 45.6 bits (109), Expect = 2e-06
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 52 EKARKQLGTFGLAGHAHTIKM-KDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
++ L G++ A + +LSGGQ+ R ALA P++I+LDEP + LD
Sbjct: 117 QRIEAMLELTGISELAG--RYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 46.0 bits (110), Expect = 2e-06
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+++A + LN P ++ILDE T+ LD+ES + +A++ +IV+H R
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH--R 535
Query: 133 L--IRDTECTLWVIENQTIEEIDGDFDDYRKELLEALG 168
L I + + VIEN I E G EL+ G
Sbjct: 536 LSTITHADKIV-VIENGHIVET-GTHR----ELIAKQG 567
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 45.2 bits (108), Expect = 2e-06
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPT---NNLDIE 108
EKA K L L+ K +LSGGQ V + + P +I++DEP
Sbjct: 132 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 109 SIDALADAINEYKGGVIIVSHDERLIRD 136
I + +I+ H ++ +
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIVLN 218
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 45.4 bits (108), Expect = 3e-06
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE--- 108
+ + L GL + +LSGGQK RVA+A + P V++ D+ T+ LD
Sbjct: 142 RRVTELLSLVGLGDKHDS-YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200
Query: 109 SIDALADAINEYKG-GVIIVSHDERLIRD 136
SI L IN G +++++H+ +++
Sbjct: 201 SILELLKDINRRLGLTILLITHEMDVVKR 229
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 44.1 bits (105), Expect = 8e-06
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ RVA+A L V+ILDE T+ LD ES A+ A++E + V++++H R
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH--R 538
Query: 133 L--IRDTECTLWVIENQTIEE 151
L I + L V++ I E
Sbjct: 539 LSTIEQADEIL-VVDEGEIIE 558
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 43.8 bits (104), Expect = 1e-05
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
++LSG Q+ RVALA + P +++LDEP +NLD
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 43.7 bits (104), Expect = 1e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
LSGGQ+ R+A+A L ++ILDE T+ LD ES
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 41.3 bits (98), Expect = 5e-05
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 9/66 (13%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL---ADAINEYKG---GVIIVSH 129
SGG+K R + +L + P +LDE + LD IDAL A +N +G G ++++H
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLD---IDALKVVARGVNAMRGPNFGALVITH 201
Query: 130 DERLIR 135
+R++
Sbjct: 202 YQRILN 207
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 41.4 bits (98), Expect = 5e-05
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL---ADAINEYKG---GVIIVSH 129
SGG+K R + ++ + P++ ILDE + LD IDAL AD +N + IIV+H
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLD---IDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 130 DERLIR 135
+R++
Sbjct: 223 YQRILD 228
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 41.4 bits (98), Expect = 5e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGGQ+ RVA+A + P+V++LDEP +NLD
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 40.7 bits (96), Expect = 1e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
LSGGQ+ RVA+A + PDV+++DEP +NLD
Sbjct: 138 YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 40.7 bits (96), Expect = 1e-04
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K LSGGQ+ RVALA + P V++ DEP +NLD
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 40.3 bits (95), Expect = 2e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K ++LSGGQ+ RVAL + P V ++DEP +NLD
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 39.3 bits (92), Expect = 4e-04
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL 113
LS G K + LA L+ +++LDEP+ +LD + +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQI 193
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 38.7 bits (91), Expect = 6e-04
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVS 128
SGGQK R+++A + P V+ILD+ T+++D + + D + Y G I++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 37.5 bits (88), Expect = 0.001
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEP 101
LSGGQK RV+LA + D+ + D+P
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDP 154
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 37.1 bits (87), Expect = 0.001
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEP 101
LSGGQ+AR++LA D+ +LD P
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSP 157
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEP 101
LSGGQ+AR++LA D+ +LD P
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSP 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 60/168 (35%)
Query: 33 LTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH-----------AHTIKMKDL------ 75
E+ E L+ +P + AGH A + ++ L
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADAT--------FAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 76 ---------SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI- 125
+ R + +N P + E++ + + + + G ++
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAIN-PGRVAAS-----FSQEALQYVVERVGKRTGWLVE 1842
Query: 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNN 173
IV+++ +ENQ GD L+ + V+N
Sbjct: 1843 IVNYN-------------VENQQY-VAAGD-----LRALDTVTNVLNF 1871
Score = 30.0 bits (67), Expect = 0.48
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 34/107 (31%)
Query: 77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD 136
G++ R + + L E I INE+ ++ L+
Sbjct: 1680 KGKRIRENYSAMIFETI-------VDGKLKTEKIF---KEINEHSTSYTF-RSEKGLLSA 1728
Query: 137 TECT----------LW-VIENQTIEEIDGDFDDYRKELLEA---LGE 169
T+ T + ++++ + D F A LGE
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATF---------AGHSLGE 1766
Score = 29.2 bits (65), Expect = 0.95
Identities = 27/158 (17%), Positives = 43/158 (27%), Gaps = 53/158 (33%)
Query: 1 MYAHCDLQPQQ---------GELKKNHRLRIGRF---DQH--SGEHLTAEETPAEYLQRL 46
M + +L +Q L ++ I SG P + L L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG--------PPQSLYGL 389
Query: 47 FNLPYEKARKQLGT------FG---LAGHA---------HTIKMKDLSGGQKARVALAEL 88
NL KA+ G F L H+ + S + +
Sbjct: 390 -NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 89 TLNAPDVIILDEP---TNN------LDIESIDALADAI 117
+ NA D + P T + L + + D I
Sbjct: 449 SFNAKD---IQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Score = 27.3 bits (60), Expect = 3.3
Identities = 34/175 (19%), Positives = 51/175 (29%), Gaps = 65/175 (37%)
Query: 6 DLQPQ-QGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFG-- 62
D +P EL +G+F + L ++ Q L L F
Sbjct: 51 DDEPTTPAEL-------VGKFLGYV-SSLVEPSKVGQFDQVL--------NLCLTEFENC 94
Query: 63 -LAG---HAHTIKM-KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
L G HA K+ ++ L + + A I+ P + S AL A+
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA--RIMAKRPFDKK-SNS--ALFRAV 149
Query: 118 NEYK-------GGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
E GG Q G+ DDY +EL +
Sbjct: 150 GEGNAQLVAIFGG-----------------------Q------GNTDDYFEELRD 175
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 37.1 bits (87), Expect = 0.002
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
K LSGGQ+ RVA+ + P V +LDEP +NLD
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.008
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 85 LAELTLNAPDVI--ILDEPTNNLDIESI-DALADAIN--EYKGGVIIVSHDERLIRDTEC 139
E D++ D +N D + + D ++ E ++ +R
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR---- 66
Query: 140 TLWVIENQTIEEIDGDF------DDYRKELLEALGEVVNNPSIVANMAVEQ 184
W + ++ EE+ F +Y K L+ + PS++ M +EQ
Sbjct: 67 LFWTLLSKQ-EEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQ 115
Score = 32.5 bits (73), Expect = 0.071
Identities = 36/206 (17%), Positives = 56/206 (27%), Gaps = 76/206 (36%)
Query: 4 HCDLQPQQGELKKNHRLRIGRFD--------------------QHSGEHLTAEETPAEYL 43
+ +L+ + HR + ++ H G HL E E +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERM 490
Query: 44 QRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN 103
LF + + R F ++ K I D
Sbjct: 491 T-LFRMVFLDFR-----F--------LEQK----------------------IRHDSTAW 514
Query: 104 NLDIESIDALADAINEYKGGVIIVSHD---ERLIRDTECTLWVIENQTIEEIDGDFDDYR 160
N ++ L + YK I +D ERL+ L IE I + D
Sbjct: 515 NASGSILNTLQQ-LKFYKP--YICDNDPKYERLVNAILDFLPKIEENLIC---SKYTD-- 566
Query: 161 KELLE-ALGEVVNNP-SIVANMAVEQ 184
LL AL + A +Q
Sbjct: 567 --LLRIAL----MAEDEAIFEEAHKQ 586
Score = 29.8 bits (66), Expect = 0.54
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 20/68 (29%)
Query: 5 CDLQPQQ----GELKKNHRLRIGRFDQHSGEHLT-------AEETPAEYLQRLFNLPYEK 53
P++ E ++ + + + LT PAEY +++F
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMF------ 375
Query: 54 ARKQLGTF 61
+L F
Sbjct: 376 --DRLSVF 381
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 34.8 bits (81), Expect = 0.010
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 22/103 (21%)
Query: 75 LSGGQK-----ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIV 127
LS GQ+ R LA P ++ILDE T+N+D ++ ++ A+ + G II+
Sbjct: 492 LSQGQRQLLAITRAFLAN-----PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546
Query: 128 SHDERL--IRDTECTLWVIENQTIEEIDGDFDDYRKELLEALG 168
+H RL I++ + + V+ + I E G D EL++ G
Sbjct: 547 AH--RLNTIKNADLII-VLRDGEIVE-MGKHD----ELIQKRG 581
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 32.9 bits (76), Expect = 0.047
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 27/85 (31%)
Query: 75 LSGGQKARVALA-EL-------TLNAPDVIILDEPTNNL---DIES----IDALADAINE 119
LSGG+ R+ LA EL T+ +LDEPT L D+E + L DA N
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTV-----YVLDEPTTGLHPADVERLQRQLVKLVDAGNT 785
Query: 120 YKGGVIIVSHDERLIRDTECTLWVI 144
VI V H +++ + WV+
Sbjct: 786 ----VIAVEHKMQVVA---ASDWVL 803
Score = 28.3 bits (64), Expect = 1.8
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 21/74 (28%)
Query: 75 LSGGQKARVALA-----ELTLNAPDVI-ILDEPT-------NNLDIESIDALADAINEYK 121
LS G+ R+ LA L V+ +LDEP+ + +++ L N
Sbjct: 380 LSPGELQRLRLATQLYSNLF----GVVYVLDEPSAGLHPADTEALLSALENLKRGGNS-- 433
Query: 122 GGVIIVSHDERLIR 135
+ +V HD +IR
Sbjct: 434 --LFVVEHDLDVIR 445
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.060
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 9/39 (23%)
Query: 145 ENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVE 183
E Q ++++ Y + A P++ +E
Sbjct: 18 EKQALKKLQASLKLYADD--SA-------PALAIKATME 47
Score = 28.8 bits (63), Expect = 0.64
Identities = 12/48 (25%), Positives = 13/48 (27%), Gaps = 25/48 (52%)
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN 118
+K L A L L A D P AL AI
Sbjct: 21 ALKKLQ---------ASLKLYADD----SAP----------AL--AIK 43
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 31.6 bits (71), Expect = 0.098
Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 9/106 (8%)
Query: 33 LTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA 92
L AE+ P RL L + ++ + + +
Sbjct: 74 LPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEG 133
Query: 93 PDVIILD---------EPTNNLDIESIDALADAINEYKGGVIIVSH 129
+++LD E + + I + + ++ + H
Sbjct: 134 RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH 179
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621,
glycerophosphodiester phosphodiesterase (GDPD), STRU
genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP:
c.1.18.3
Length = 234
Score = 31.1 bits (71), Expect = 0.15
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR----KELLEALGE 169
G ++VSHDE L R + I + T+ E+ + D + KE+ E + +
Sbjct: 54 GKVVVSHDEDLKRLFGLDVK-IRDATVSELK-ELTDGKITTLKEVFENVSD 102
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.5 bits (70), Expect = 0.32
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 15/63 (23%)
Query: 75 LSGGQKARVALA-EL-------TLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGV 124
LSGG+ R+ LA EL TL ILDEPT L E + L + ++ +G
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTL-----YILDEPTVGLHFEDVRKLVEVLHRLVDRGNT 860
Query: 125 IIV 127
+IV
Sbjct: 861 VIV 863
Score = 27.8 bits (63), Expect = 2.2
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 21/74 (28%)
Query: 75 LSGGQKARVALA-----ELTLNAPDVI-ILDEPT-------NNLDIESIDALADAINEYK 121
LSGG+ R+ LA LT VI +LDEPT I+++ L D N
Sbjct: 465 LSGGESQRIRLATQIGSGLT----GVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNT-- 518
Query: 122 GGVIIVSHDERLIR 135
VI+V HDE +IR
Sbjct: 519 --VIVVEHDEEVIR 530
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 29.8 bits (68), Expect = 0.56
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Query: 75 LSGGQKARVALA-EL-------TLNAPDVIILDEPTNNLDIESIDALADAINE 119
LSGG+ RV LA EL TL ILDEPT L ++ I L D ++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTL-----YILDEPTTGLHVDDIARLLDVLHR 591
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 28.8 bits (65), Expect = 0.61
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 75 LSGGQKARVALAEL----TLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV--IIVS 128
+SGG+KA ALA + + DE +LD ++ +AD I E I+++
Sbjct: 65 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124
Query: 129 H 129
Sbjct: 125 L 125
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 28.6 bits (65), Expect = 1.1
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 13/47 (27%)
Query: 75 LSGGQKARVALA-EL-------TLNAPDVIILDEPTNNLDIESIDAL 113
LSGG+ RV LA EL TL ILDEPT L ++ I L
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTL-----YILDEPTTGLHVDDIARL 887
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 28.6 bits (65), Expect = 1.1
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 13/53 (24%)
Query: 75 LSGGQKARVALA-EL-------TLNAPDVIILDEPTNNLDIESIDALADAINE 119
LSGG+ RV LA EL T+ ILDEPT L + I L + IN
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTV-----YILDEPTTGLHFDDIRKLLNVING 911
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST
genomics, protein structure initiative, PSI; 2.20A
{Staphylococcus aureus subsp} PDB: 2p76_A
Length = 287
Score = 28.4 bits (64), Expect = 1.3
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEI 152
G ++ HDE + R T +E+ T++E+
Sbjct: 66 GHLVAMHDETVNRTTNGH-GKVEDYTLDEL 94
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1;
HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Length = 278
Score = 28.3 bits (63), Expect = 1.6
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEI--------DGDFDDYR----KELLEALGE 169
G +I+ HD L R T I+N T+ +I DG +Y +E L
Sbjct: 59 GQLILMHDNTLDRTTTGK-GEIKNWTLADIKKLKLKDKDGKVTNYVVPTLEEALLTAKG 116
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 27.9 bits (63), Expect = 1.6
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 72 MKDL---SGGQKARVALAELTLNAPDVIILD--EPTNNLDIESIDALADAINEYKGGVII 126
M L GQ L ++I LD D + +A+ + + + VI+
Sbjct: 1 MNILLFGKTGQVGW-ELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIV 59
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 27.9 bits (63), Expect = 1.6
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 67 AHTIKMKDL---SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG 123
++ +K + + + GQ + EL D+ D+ LDI +I + + E +
Sbjct: 1 SNAMKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKL--LDITNISQVQQVVQEIRPH 58
Query: 124 VII 126
+II
Sbjct: 59 III 61
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 27.9 bits (63), Expect = 1.6
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 66 HAHTIKMKDL---SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG 122
H H MK L + GQ R +L +VI D LDI ++ A+ NE K
Sbjct: 7 HHHHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD--LDITNVLAVNKFFNEKKP 64
Query: 123 GVII 126
V+I
Sbjct: 65 NVVI 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 1.7
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 77 GGQKARVALAELTLNAPDVIILDE--PTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
A E + VII+DE + D + +++ V+ +
Sbjct: 84 AIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH 143
Query: 135 RDTE 138
+
Sbjct: 144 PLVK 147
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1,
glycerophosphoryl diester phosphodiesterase, ST
genomics; HET: MSE CIT GOL; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 272
Score = 28.1 bits (63), Expect = 1.8
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEAL 167
++VSHD + + + E + + ++ +
Sbjct: 50 NRVVVSHDTFFHHEITMMVDGEDVTEANEKNFNLYAMNYADIKEI 94
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
joint center for structural genomics; HET: MSE PE4;
1.55A {Parabacteroides distasonis}
Length = 292
Score = 27.8 bits (62), Expect = 1.8
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEI--------DGDFDDYR----KELLEALGE 169
VI++ HD+ L R + T V + T EE+ +G+ +YR +E +
Sbjct: 74 SVIVLFHDDTLERTSNGTGKV-SDYTWEELQNFRLKDPEGNITNYRIPTLEEAIRWARG 131
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester
phosphodiesterase, T. tengcongensis; 1.91A
{Thermoanaerobacter tengcongensis}
Length = 252
Score = 27.6 bits (62), Expect = 2.0
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEI---------DGDFDDYRKELLEALGEVVNN 173
G ++V HDE + R T +V ++ T+EEI F R L + E++ +
Sbjct: 53 GHLVVIHDETVDRTTNGEGFV-KDFTLEEIKKLDAGIKFGEKFAGERIPTLYEVFELIGD 111
Query: 174 PSIVAN 179
+ N
Sbjct: 112 KDFLVN 117
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid,
transferase; HET: ADP; 2.15A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 269
Score = 27.6 bits (62), Expect = 2.2
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 99 DEPTNNLDIESIDALADAINEYKGGVIIVSH 129
D +D ++++ +A I +++ H
Sbjct: 18 DSEEPAIDRDNLERIASEIGNASPSSLMIVH 48
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 27.4 bits (60), Expect = 2.7
Identities = 12/81 (14%), Positives = 25/81 (30%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
+ G+ I + + + P ++ L P N E I
Sbjct: 69 PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIR 128
Query: 112 ALADAINEYKGGVIIVSHDER 132
+ + Y+ GV++ S +
Sbjct: 129 EIIRKASMYRMGVLLFSKHPQ 149
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 27.3 bits (61), Expect = 2.8
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 75 LSGGQKARVALAEL----TLN-APDVIILDEPTNNLDIESIDALADAINEYKGGV--IIV 127
LSGG+KA V LA L + +P +LDE + LD + + + E I++
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFY-VLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI 278
Query: 128 SH 129
+H
Sbjct: 279 TH 280
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira
antarctica}
Length = 252
Score = 27.2 bits (61), Expect = 2.8
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEI 152
G+ ++ HD+ L R T+ +I + E+
Sbjct: 51 GIPVIFHDDYLSRTTDGD-GLIYKTPLAEL 79
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange,
membrane, transport protein; HET: MSE; 1.90A {Vibrio
cholerae} PDB: 3mgl_A*
Length = 130
Score = 26.5 bits (59), Expect = 3.4
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 91 NAPDVIILD-EPTNNLDIESIDALADAINEYK--GGVIIVSH 129
P ++IL + +DI I L + I + G +++S
Sbjct: 47 ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISG 88
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 27.1 bits (60), Expect = 4.0
Identities = 7/41 (17%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 95 VIILDEPTN----NLDIESIDALADAINEYKGGVIIVSHDE 131
+ P+N +D S++ + + + E++ ++I++ D+
Sbjct: 248 IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILT-DD 287
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 26.9 bits (60), Expect = 4.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 74 DLSGGQKARVALAELTLNAPDVIILDEPTNNL-DIESIDALADAINEYKGGV 124
D++ GQ A L L+ P LD + D++SI AL D + + GG+
Sbjct: 38 DVTRGQAAVQQLQAEGLS-PRFHQLD-----IDDLQSIRALRDFLRKEYGGL 83
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain,
anion exchange, membrane, transport protein; HET: MSE;
1.60A {Wolinella succinogenes} PDB: 3oir_A*
Length = 135
Score = 26.2 bits (58), Expect = 4.2
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 91 NAPDVIILD-EPTNNLDIESIDALADAINEYK--GGVIIVSH 129
P V IL +D + AL + + G ++++S
Sbjct: 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSG 91
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Length = 250
Score = 26.8 bits (60), Expect = 4.3
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEIDG-DFDDYRKE---LLEALGEVVNNPSIVA 178
G I+V HD L T+ T + + T+ ++ LE L + + +
Sbjct: 44 GAIVVHHDPTLDATTDMTGAI-VDMTLAKVKTATIRYGAGSHPMTLEELCALYVDSHVNF 102
Query: 179 N 179
Sbjct: 103 R 103
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase;
HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Length = 373
Score = 26.9 bits (59), Expect = 4.4
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY 120
GG AR+ N + + + I + + NE
Sbjct: 37 GGTSARMGFVREGKNDSVHACVTRYSM--KRKDITEIIEFFNEI 78
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD;
1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Length = 448
Score = 27.0 bits (60), Expect = 4.6
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 155 DFDDYRKELLEALGEVVNNPSIVA 178
DF ++ + +N+PS+VA
Sbjct: 278 DFAANNPKVELKPVDYINHPSVVA 301
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium
tumefaciens STR. C58, structural genomics; 2.50A
{Agrobacterium tumefaciens str} SCOP: c.1.18.3
Length = 248
Score = 26.1 bits (58), Expect = 6.1
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEI 152
GV+ V HDE L R T T + + EI
Sbjct: 43 GVLYVIHDETLDRTTNGT-GPVGHMLSSEI 71
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB),
bicarbonate transport, anion T membrane protein, STAS
domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Length = 118
Score = 25.4 bits (56), Expect = 6.5
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 93 PDVIILD-EPTNNLDIESIDALADAINEYK-GGVIIVSHDERLIRDT 137
++IL + LD +DA + G + V + E T
Sbjct: 46 KRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRT 92
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 25.8 bits (57), Expect = 7.4
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 137 TECTLWVIENQTIEEIDGDFDDYRKELLEAL 167
+ LW ++ T I + ++++ E+
Sbjct: 131 SPGALWGLDRVTFRRIIVKNNAKKRKMYESF 161
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 26.0 bits (58), Expect = 7.6
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 84 ALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119
A+ + L+ P+ + N +D ++ L+ I +
Sbjct: 15 AVLRIRLDRPEKL------NAVDTPMLEELSVHIRD 44
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein
complex, center for eukaryotic structural genomics, PSI;
HET: MSE; 1.98A {Homo sapiens} PDB: 1quq_B 1l1o_A
Length = 121
Score = 25.3 bits (55), Expect = 8.0
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 83 VALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK 121
A+ T+ + E ++ D+ + I+++
Sbjct: 72 RVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFP 110
>2fu4_A Ferric uptake regulation protein; DNA binding domain,
helix-turn-helix, DNA binding protein; 1.80A
{Escherichia coli}
Length = 83
Score = 24.8 bits (55), Expect = 8.4
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 13/47 (27%)
Query: 19 RLRIGR-FDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLA 64
RL+I + H++AE+ Y++ GLA
Sbjct: 19 RLKILEVLQEPDNHHVSAEDL------------YKRLIDMGEEIGLA 53
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 25.6 bits (57), Expect = 9.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 84 ALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119
+ LTLN P+ + N + E +DAL A+ E
Sbjct: 9 GVLVLTLNRPEKL------NAITGELLDALYAALKE 38
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 25.8 bits (56), Expect = 9.4
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNP 174
+ + D TLW + + DF Y ++ P
Sbjct: 247 KAMCDLLWTLWGLIQLANDNPVDDFRAYADGRFARCKALMETP 289
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 25.6 bits (57), Expect = 9.4
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 72 MKDL---SGGQKARVALAELTLNAPDVIILD-----EPTNNLDIESIDALADAINEYKGG 123
M+ L + GQ L+ L +VI + + LD+ L D I + +
Sbjct: 1 MRTLITGASGQLGI-ELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPD 59
Query: 124 VII 126
VII
Sbjct: 60 VII 62
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.60A {Silicibacter
pomeroyi}
Length = 313
Score = 25.9 bits (57), Expect = 9.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 123 GVIIVSHDERLIRDT 137
GV +V+H+ L
Sbjct: 59 GVPVVTHNHHLANAM 73
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 25.3 bits (55), Expect = 10.0
Identities = 16/156 (10%), Positives = 50/156 (32%), Gaps = 13/156 (8%)
Query: 15 KKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKD 74
+ + + + + L + + + E+ +++L T + ++K
Sbjct: 51 RAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDEYFESVKALL 110
Query: 75 LSGGQKARVALAELTLNAPDVIILDE--PTNNLDIESIDALADAINEYKGGVIIVSHDER 132
++ + N + ++ ++ + + GGVI+ + D R
Sbjct: 111 KEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELGDVSIELGETVDTMGGVIVETEDGR 170
Query: 133 LIRDTECTLWVIENQTIEE-IDGDFDDYRKELLEAL 167
+ + T E ++ + R + + L
Sbjct: 171 ----------IRIDNTFEARMERFEGEIRSTIAKVL 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,011,095
Number of extensions: 192910
Number of successful extensions: 886
Number of sequences better than 10.0: 1
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 147
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)