RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11928
(184 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 67.5 bits (165), Expect = 1e-14
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 32 HLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
H+T E A L ++ P ++ K+ + + LSGGQ+ RVA+A
Sbjct: 92 HMTVYENIAFPL-KIKKFPKDEIDKRVRWAAELLQIEELLNR-YPAQLSGGQRQRVAVAR 149
Query: 88 LTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRDTECTLWV 143
+ PDV+++DEP +NLD + A+ I + K I V+HD+ + V
Sbjct: 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 209
Query: 144 IENQTIEEID 153
+ + +I
Sbjct: 210 MNRGQLLQIG 219
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 67.2 bits (164), Expect = 2e-14
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A L ++ILDE T+ LD ES A+ A++E + ++++H
Sbjct: 153 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 212
Query: 133 LIRDTECTLWVIENQTIEEID 153
I + + V+E+ I E
Sbjct: 213 TIEQADEIV-VVEDGIIVERG 232
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 65.6 bits (160), Expect = 5e-14
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 13 ELKKNHRLRIGRFDQHSG--EHLTAEETPAEYL--QRLFNLPYEKARKQL----GTFGLA 64
EL K R +IG Q LTA E L + + E+ RK+ L
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEY 120
K LSGGQ+ RVA+A N P +I+ D+PT LD ++ + L E
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195
Query: 121 KGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
V++V+HD + R E + +++ +E +
Sbjct: 196 GKTVVVVTHDINVARFGERII-YLKDGEVEREE 227
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 64.8 bits (158), Expect = 1e-13
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQK R+++A + LN P ++ILDE T+ LD+ES + +A++ +IV+H
Sbjct: 155 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 214
Query: 133 LIRDTECTLWVIENQTIEEID 153
I + + VIEN I E
Sbjct: 215 TITHADKIV-VIENGHIVETG 234
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 64.6 bits (157), Expect = 1e-13
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
EKA K L L+ K +LSGGQ V + + P +I++DEP +
Sbjct: 129 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 187
Query: 112 ALADAINEYKG---GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALG 168
+ + + E K +I+ H ++ + L+V+ N I +G ++ K +L
Sbjct: 188 DIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEEEIKNVL---- 242
Query: 169 EVVNNPSIVANM 180
++P +V
Sbjct: 243 ---SDPKVVEIY 251
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 64.1 bits (156), Expect = 2e-13
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 9/157 (5%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LG 59
L+ + R R+ QH H+T E E ++ L AR++ L
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 134
Query: 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119
G+ A LSGGQ+ RV++A PDV++ DEPT+ LD E + + + +
Sbjct: 135 KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 194
Query: 120 YKG---GVIIVSHDERLIRDTECTLWVIENQTIEEID 153
+++V+H+ R + + IEE
Sbjct: 195 LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 63.7 bits (155), Expect = 2e-13
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 6 DLQPQQGELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LG 59
+L R +IG QH T A L L N P ++ +++ L
Sbjct: 68 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLS 126
Query: 60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADA 116
GL + +LSGGQK RVA+A + P V++ DE T+ LD SI L
Sbjct: 127 LVGLGDKHDS-YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 117 INEYKG-GVIIVSHDERLIRDTECTLWVIENQTIEEID 153
IN G +++++H+ +++ + VI N + E D
Sbjct: 186 INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 223
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 61.1 bits (148), Expect = 1e-12
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 12 GELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR--KQLGTFGLAGHA 67
G + +I + ++ E+ + + L+ + K L + +
Sbjct: 62 GVPITKVKGKIFFLPEEIIVPRKISVEDY-LKAVASLYGVKVNKNEIMDALESVEVLDLK 120
Query: 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVI 125
K+ +LS G RV LA L ++ +LD+P +D +S + +I E + G++
Sbjct: 121 K--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178
Query: 126 IVSHDERL 133
I+S E L
Sbjct: 179 IISSREEL 186
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 60.7 bits (147), Expect = 4e-12
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Query: 52 EKARKQLGTFGLAGHAHTI---KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE 108
+ + Q A +T+ LSGGQ+AR++LA D+ +LD P LD+
Sbjct: 133 KACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192
Query: 109 SIDALADAINEYKGG---VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
+ + + ++ I+V+ +R + L ++ + G F EL
Sbjct: 193 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL-ILHQGSSYFY-GTFS----ELQS 246
Query: 166 ALGEVV 171
+
Sbjct: 247 LRPDFS 252
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 60.3 bits (146), Expect = 5e-12
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
+SGGQ+ R+A+A L P +++LDE T +LD ES + A++ G ++++H
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199
Query: 133 LIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
I D + IE I G + E+V + A EQ
Sbjct: 200 TIVDADKIY-FIEKGQITG-SGKHN-----------ELVATHPLYAKYVSEQ 238
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 60.0 bits (145), Expect = 5e-12
Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 17/172 (9%)
Query: 14 LKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EKARKQLGTFGLAGHA 67
R I + +G ++ E ++ + E + GL
Sbjct: 69 EPHEVRKLISYLPEEAGAYRNMQGIEYL-RFVAGFYASSSSEIEEMVERATEIAGLGEKI 127
Query: 68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGV 124
++ S G ++ +A + P + ILDEPT+ LD+ + + + + +
Sbjct: 128 KD-RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 186
Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR-----KELLEALGEVV 171
++ SH+ + + +I N TI E G ++ + + + E EVV
Sbjct: 187 LVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELKERYKAQNIEEVFEEVV 237
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 60.6 bits (145), Expect = 6e-12
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 65 GHAHTIKMKDLSGGQKARV------ALAELTLNAPDVIILDEPTNNLDIESIDALADAIN 118
+ LSGG++ + A++ ++ILDEPT LD E L +
Sbjct: 269 WEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME 328
Query: 119 EYK---GGVIIVSHDERLIR 135
Y VI+VSHDE L
Sbjct: 329 RYLKKIPQVILVSHDEELKD 348
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 59.2 bits (143), Expect = 1e-11
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
LSGGQ+ R+A+A +N P ++I DE T+ LD ES + +++ G VII++H
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199
Query: 133 LIRDTECTLWVIENQTIEEID 153
+++ + + V+E I E
Sbjct: 200 TVKNADRII-VMEKGKIVEQG 219
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 58.4 bits (141), Expect = 2e-11
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
++ R+ GL + ++LSGGQ+ RVAL + P V ++DEP +NLD +
Sbjct: 118 QRVREVAELLGLTELLNRK-PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 112 ALADAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
+ + + I V+HD+ + V+ ++++
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 58.6 bits (140), Expect = 2e-11
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 84 ALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDERLIR 135
A++ ++ILDEPT LD E L + Y VI+VSHDE L
Sbjct: 217 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 271
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 54.9 bits (132), Expect = 3e-10
Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK 121
L LSGG++ +A+ ++ P ++++DEP+ L + + + I +
Sbjct: 128 RLKERLKQ-LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 122 G---GVIIVSHDERLIRDTECTLWVIENQTIEEID 153
+++V + +V+E I
Sbjct: 187 QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEG 221
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 53.8 bits (129), Expect = 9e-10
Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 13/160 (8%)
Query: 19 RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78
L Q L + E G L LSGG
Sbjct: 71 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-STNQLSGG 129
Query: 79 QKARVALAELTLN-------APDVIILDEPTNNLDIES---IDALADAINEYKGGVIIVS 128
+ RV LA + L A +++LDEP N+LD+ +D + A+ + +++ S
Sbjct: 130 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSS 189
Query: 129 HDERLIRDTECTLWVIENQTIEEIDGDFDD-YRKELLEAL 167
HD W+++ + G ++ L
Sbjct: 190 HDLNHTLRHAHRAWLLKGGKMLA-SGRREEVLTPPNLAQA 228
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 53.8 bits (129), Expect = 1e-09
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVS 128
LSGGQ+ VALA + P V+ILD+ T+ LD S L ++ Y V++++
Sbjct: 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 209
Query: 129 HDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALG 168
L+ + L +E I E G +L+E G
Sbjct: 210 QHLSLVEQADHIL-FLEGGAIRE-GGTHQ----QLMEKKG 243
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 52.3 bits (125), Expect = 3e-09
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
++ + LA K K LSGGQ+ RVA+ + P V +LDEP +NLD
Sbjct: 109 QRVNQVAEVLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 167
Query: 112 ALADAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
+ I+ +I V+HD+ + V++ + ++
Sbjct: 168 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 213
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 47.8 bits (113), Expect = 1e-07
Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 10/162 (6%)
Query: 1 MYAHCDLQPQQGELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY---EKAR 55
+ + + +IG Q +LTA E A L + ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD 115
+ + + ++LSG Q+ RVALA + P +++LDEP +NLD D+
Sbjct: 123 EVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 116 AINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
+ E +++VSHD I + V+ + ++
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 45.4 bits (107), Expect = 7e-07
Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
Query: 18 HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDL 75
+ I Q+ H+ ++ ++ ++ + L
Sbjct: 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-NPLTL 128
Query: 76 SGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKG-GVIIVSHDE 131
SGG++ RVALA + P +++LDEP + LD E+ + +++ V+ ++HD+
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 132 RLIRDTECTLWVIENQTIEEID 153
R + V+ + + ++
Sbjct: 189 TEARIMADRIAVVMDGKLIQVG 210
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 43.1 bits (101), Expect = 5e-06
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 17/163 (10%)
Query: 7 LQPQQGELKKN---------HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYE-KA 54
++P +GE++ N R IG Q HL+ A L+ + + + +
Sbjct: 48 VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRV 107
Query: 55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA 114
R+ G+A K LSGG++ RVALA + P +++LDEP + +D+++ L
Sbjct: 108 REMAEKLGIAHLLDR-KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166
Query: 115 DAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
+ + + ++ V+HD + V+ N I E
Sbjct: 167 EELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 41.5 bits (96), Expect = 1e-05
Identities = 19/160 (11%), Positives = 47/160 (29%), Gaps = 12/160 (7%)
Query: 19 RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGL--------AGHAHTI 70
+ + R + + T E E +R K+ + +
Sbjct: 18 KKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV 77
Query: 71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI--ESIDALADAINEYKGGVIIVS 128
+ + A E + VII+DE + D + +++ V+
Sbjct: 78 QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI 137
Query: 129 HDERLIRDTECTLWVIENQTIEEID-GDFDDYRKELLEAL 167
+ + + + + E+ + D +++L L
Sbjct: 138 PIRDVHPLVK-EIRRLPGAVLIELTPENRDVILEDILSLL 176
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 42.0 bits (97), Expect = 2e-05
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 21/129 (16%)
Query: 13 ELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKM 72
EL KN + ++ + E+ P + P K M
Sbjct: 285 ELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLK--------------RFKDM 330
Query: 73 KDLSGGQKARVALAEL----TLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VI 125
+ LSGG+K ALA L + +LDE LDI ++ +A I ++ I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 126 IVSHDERLI 134
++S +
Sbjct: 391 VISLKNTMF 399
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase
(RmlD) {Salmonella enterica serovar typhimurium [TaxId:
90371]}
Length = 298
Score = 30.7 bits (67), Expect = 0.093
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 72 MKDL---SGGQKARVALAELTLNAPDVIILD--EPTNNLDIESIDALADAINEYKGGVII 126
M L GQ L ++I LD D + +A+ + + + VI+
Sbjct: 1 MNILLFGKTGQVGW-ELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIV 59
Query: 127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161
+ + E + + ++ +
Sbjct: 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANE 94
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 356
Score = 26.6 bits (58), Expect = 2.1
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 26/71 (36%)
Query: 106 DIESIDALADAINEYK-GGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELL 164
D ES A I + + GGV+ W + D + +LL
Sbjct: 291 DAESFKYKAKYIKQQQLGGVMF---------------W--------HLGQD--NRNGDLL 325
Query: 165 EALGEVVNNPS 175
AL N
Sbjct: 326 AALDRYFNAAD 336
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
[TaxId: 562]}
Length = 186
Score = 26.1 bits (56), Expect = 2.3
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 103 NNLDIESIDALADAINEYKGGVIIVSHD 130
NNL ++I A D +N + VI +
Sbjct: 1 NNLQRDAIAAAIDVLN--EERVIAYPTE 26
>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
{Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
Length = 361
Score = 26.2 bits (56), Expect = 2.6
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 103 NNLDIESIDALADAINEYK 121
N + ES +AL + +K
Sbjct: 339 NAVPYESCEALVQFMEHFK 357
>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Escherichia coli [TaxId: 562]}
Length = 360
Score = 26.2 bits (56), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 103 NNLDIESIDALADAINEY 120
N + +E + AL D + E+
Sbjct: 338 NAMPLEGVKALTDFMVEF 355
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 25.1 bits (54), Expect = 3.5
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 137 TECTLWVIENQTIEEIDGDFDDYRKELLEALGE 169
++ Q E + G + K + E
Sbjct: 102 GTVKCLAMDVQAFERLLGPCMEIMKRNIATYEE 134
>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Bacillus alcalophilus [TaxId: 1445]}
Length = 360
Score = 25.8 bits (55), Expect = 3.8
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 103 NNLDIESIDALADAINEYK 121
N + I++ AL + + ++K
Sbjct: 339 NAVPIDACIALRELMIQFK 357
>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli
[TaxId: 562]}
Length = 183
Score = 25.2 bits (54), Expect = 4.0
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 93 PDVIILDEP-TNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI 144
+++ +D P L E+I+ L D +I V + T W +
Sbjct: 112 HNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSL 164
>d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
Length = 253
Score = 25.4 bits (55), Expect = 4.9
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 9/95 (9%)
Query: 91 NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIE 150
N D + + + GG +++ + D + L +TI
Sbjct: 67 NRADYVAC------HNPAYVGIYDILEGIKDGGTFVLNSPWSSLEDMDKHLPSGIKRTIA 120
Query: 151 EIDGDF---DDYRKELLEALGEVVNNPSIVANMAV 182
F D + LG +N A +
Sbjct: 121 NKKLKFYNIDAVKIATDVGLGGRINMIMQTAFFKL 155
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
[TaxId: 6239]}
Length = 395
Score = 25.2 bits (54), Expect = 5.4
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 19/57 (33%)
Query: 131 ERLIRDTEC---------TLWVIENQTIEEIDGDFDDY----------RKELLEALG 168
E L+++T +W + + + F DY K+LL+ L
Sbjct: 339 EDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLLKNLA 395
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 321
Score = 24.8 bits (54), Expect = 7.2
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 148 TIEEIDGDFDDY---RKELLEALGEVVNN-PSIVANMAVEQ 184
T+ I+ DF++Y R L V ++ + Q
Sbjct: 124 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQ 164
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 24.4 bits (52), Expect = 7.6
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 137 TECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVN 172
++ E + G D K ++ V+
Sbjct: 97 GPLKCVKLDRPRFERVLGPCSDILKRNIQQYNSFVS 132
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase
GlpQ {Escherichia coli [TaxId: 562]}
Length = 328
Score = 24.7 bits (52), Expect = 7.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 121 KGGVIIVSHDERLIRDT 137
K ++V HD L R T
Sbjct: 42 KDDNLVVLHDHYLDRVT 58
>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine
phosphoribosyltransferase PH0095 {Pyrococcus horikoshii
[TaxId: 53953]}
Length = 153
Score = 24.4 bits (52), Expect = 8.2
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 108 ESIDALADAINEYKGGVIIVSHDERLI--RDTECTLWVIENQTIEEIDGDFDDYRKE 162
+I ALA+ + EYK VII LI L I + I+ D R E
Sbjct: 13 RAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGE 69
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase
RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 60
Score = 23.0 bits (50), Expect = 8.9
Identities = 2/25 (8%), Positives = 10/25 (40%)
Query: 105 LDIESIDALADAINEYKGGVIIVSH 129
+ + +D+ + + G + +
Sbjct: 5 VSVNDLDSFGQGVARHNGKTLFIPG 29
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 24.2 bits (51), Expect = 9.1
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 129 HDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGE 169
+ DT C L+ + E+ ++ R+ +
Sbjct: 149 RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 189
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 24.1 bits (51), Expect = 9.4
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 105 LDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTI 149
L+ + +D L A+N I++ D + + E
Sbjct: 4 LNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKA 48
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14)
subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 23.6 bits (51), Expect = 9.5
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 86 AELTLNAPDVIILDEPTNNLDIESIDALADAINEYK 121
A+ T+ + E ++ D+ + I+++
Sbjct: 73 AKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFP 108
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 24.6 bits (51), Expect = 9.7
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 27/114 (23%)
Query: 66 HAHTIKMKDLSG---GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG 122
+++ L+ + +LA L + LD N L I L ++
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES------ 420
Query: 123 GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSI 176
+R C L + + D + + ++ L+AL + + PS+
Sbjct: 421 -----------VRQPGCLL-----EQLVLYDIYWSEEMEDRLQALEK--DKPSL 456
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 708,051
Number of extensions: 33390
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 60
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (24.0 bits)