Query psy11929
Match_columns 433
No_of_seqs 297 out of 1871
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 22:35:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jzx_A Poly(RC)-binding protei 100.0 4.1E-28 1.4E-32 215.2 14.1 157 12-194 2-159 (160)
2 3krm_A Insulin-like growth fac 99.9 2E-26 6.7E-31 205.0 17.0 155 123-359 2-159 (163)
3 3krm_A Insulin-like growth fac 99.9 1.8E-26 6.1E-31 205.2 15.8 151 14-194 2-156 (163)
4 2anr_A Neuro-oncological ventr 99.9 7E-27 2.4E-31 210.9 12.3 157 12-194 3-175 (178)
5 2anr_A Neuro-oncological ventr 99.9 2.3E-26 7.9E-31 207.5 13.6 169 121-357 3-176 (178)
6 2jvz_A KH type-splicing, FAR u 99.9 1.9E-25 6.5E-30 198.7 16.1 158 124-357 2-161 (164)
7 1j4w_A FUSE binding protein; s 99.9 1.1E-25 3.6E-30 202.4 12.9 153 14-192 2-174 (174)
8 2jzx_A Poly(RC)-binding protei 99.9 2.1E-25 7.1E-30 197.7 14.4 156 121-356 2-159 (160)
9 2jvz_A KH type-splicing, FAR u 99.9 1.8E-25 6.1E-30 198.9 13.8 153 15-194 2-160 (164)
10 1j4w_A FUSE binding protein; s 99.9 3.6E-25 1.2E-29 198.9 13.7 169 123-354 2-174 (174)
11 3n89_A Defective in GERM LINE 99.9 1.2E-24 4.2E-29 214.0 17.2 221 10-357 25-262 (376)
12 2qnd_A FMR1 protein; KH domain 99.8 8.8E-19 3E-23 151.9 12.2 133 123-356 3-142 (144)
13 2qnd_A FMR1 protein; KH domain 99.8 7.8E-19 2.7E-23 152.2 10.3 134 14-194 3-142 (144)
14 2e3u_A PH-DIM2P, hypothetical 99.7 2.5E-17 8.6E-22 151.8 10.9 149 13-194 32-191 (219)
15 2e3u_A PH-DIM2P, hypothetical 99.7 1.6E-16 5.6E-21 146.3 10.7 145 121-356 31-191 (219)
16 1zzk_A Heterogeneous nuclear r 99.6 1.7E-15 5.9E-20 118.4 9.8 72 286-357 5-77 (82)
17 2p2r_A Poly(RC)-binding protei 99.6 8E-16 2.7E-20 118.5 7.1 72 286-357 3-75 (76)
18 1wvn_A Poly(RC)-binding protei 99.6 1.2E-15 4.2E-20 119.2 7.6 72 286-357 4-76 (82)
19 1tua_A Hypothetical protein AP 99.6 2.2E-15 7.6E-20 135.4 9.8 140 16-194 5-160 (191)
20 2axy_A Poly(RC)-binding protei 99.6 1.2E-15 4.2E-20 116.4 5.8 71 12-108 2-72 (73)
21 1dtj_A RNA-binding neurooncolo 99.6 2.7E-15 9.1E-20 115.6 7.5 70 287-356 2-75 (76)
22 2axy_A Poly(RC)-binding protei 99.6 2.5E-15 8.4E-20 114.8 7.1 70 286-356 3-72 (73)
23 1j5k_A Heterogeneous nuclear r 99.6 3E-15 1E-19 118.9 6.8 74 284-357 10-84 (89)
24 1x4n_A FAR upstream element bi 99.6 1E-14 3.5E-19 116.5 9.5 73 286-358 13-86 (92)
25 1tua_A Hypothetical protein AP 99.6 1E-14 3.5E-19 131.1 10.3 139 126-355 6-159 (191)
26 2dgr_A Ring finger and KH doma 99.6 6.2E-15 2.1E-19 115.0 7.6 69 286-356 8-76 (83)
27 3n89_A Defective in GERM LINE 99.5 6.4E-15 2.2E-19 145.0 8.8 189 120-424 26-227 (376)
28 2hh3_A KH-type splicing regula 99.5 1.5E-14 5.1E-19 118.3 7.7 72 288-359 11-83 (106)
29 1ec6_A RNA-binding protein NOV 99.5 1.1E-14 3.8E-19 115.1 6.3 73 287-359 2-78 (87)
30 2opv_A KHSRP protein; KH domai 99.5 6.1E-14 2.1E-18 110.3 9.7 70 286-355 12-84 (85)
31 2hh2_A KH-type splicing regula 99.5 2.2E-14 7.5E-19 117.8 7.4 71 289-359 8-82 (107)
32 1x4m_A FAR upstream element bi 99.5 4.1E-14 1.4E-18 113.4 8.7 73 285-357 12-87 (94)
33 1zzk_A Heterogeneous nuclear r 99.5 2E-13 6.7E-18 106.6 9.7 73 121-194 4-76 (82)
34 2p2r_A Poly(RC)-binding protei 99.5 8.6E-14 3E-18 107.1 7.1 72 122-194 3-74 (76)
35 1wvn_A Poly(RC)-binding protei 99.5 1.1E-13 3.6E-18 108.2 7.7 73 121-194 3-75 (82)
36 2cte_A Vigilin; K homology typ 99.5 1.4E-13 4.8E-18 110.3 8.4 76 285-361 14-89 (94)
37 1we8_A Tudor and KH domain con 99.5 1E-13 3.5E-18 113.2 7.7 72 286-357 13-87 (104)
38 1dtj_A RNA-binding neurooncolo 99.5 1.3E-13 4.3E-18 106.1 7.6 71 124-194 3-75 (76)
39 1j5k_A Heterogeneous nuclear r 99.5 6.4E-14 2.2E-18 111.1 6.0 77 7-109 6-84 (89)
40 2ctl_A Vigilin; K homology typ 99.4 2.8E-13 9.5E-18 109.1 9.3 74 286-359 15-90 (97)
41 2opv_A KHSRP protein; KH domai 99.4 4.5E-13 1.5E-17 105.3 9.9 74 121-194 11-85 (85)
42 1vig_A Vigilin; RNA-binding pr 99.4 1.9E-13 6.3E-18 103.7 6.8 68 286-354 3-70 (71)
43 2ctm_A Vigilin; K homology typ 99.4 4.7E-13 1.6E-17 107.2 9.3 73 285-357 14-86 (95)
44 2hh2_A KH-type splicing regula 99.4 2.4E-13 8.4E-18 111.5 7.6 70 125-194 8-79 (107)
45 1x4n_A FAR upstream element bi 99.4 5.3E-13 1.8E-17 106.5 9.0 73 121-194 12-84 (92)
46 1ec6_A RNA-binding protein NOV 99.4 2.8E-13 9.6E-18 107.0 6.9 71 124-194 3-75 (87)
47 1x4m_A FAR upstream element bi 99.4 3E-13 1E-17 108.4 7.1 73 11-109 11-87 (94)
48 1vig_A Vigilin; RNA-binding pr 99.4 5.4E-13 1.8E-17 101.1 6.8 68 13-106 3-70 (71)
49 2dgr_A Ring finger and KH doma 99.4 4.5E-13 1.5E-17 104.5 5.3 70 11-107 6-75 (83)
50 2hh3_A KH-type splicing regula 99.4 1.4E-12 4.8E-17 106.5 7.9 71 123-194 10-80 (106)
51 1we8_A Tudor and KH domain con 99.3 1.6E-12 5.4E-17 106.1 7.8 74 9-108 9-86 (104)
52 2cte_A Vigilin; K homology typ 99.3 8.1E-13 2.8E-17 105.8 5.2 73 11-109 13-85 (94)
53 2ctk_A Vigilin; K homology typ 99.3 2.3E-12 7.9E-17 105.0 7.3 70 287-357 16-85 (104)
54 2ctl_A Vigilin; K homology typ 99.3 3.8E-12 1.3E-16 102.4 8.5 73 122-194 15-87 (97)
55 2ctj_A Vigilin; K homology typ 99.3 7.4E-12 2.5E-16 100.1 8.3 77 284-361 13-90 (95)
56 2ctm_A Vigilin; K homology typ 99.3 4.2E-12 1.4E-16 101.7 6.2 76 10-111 12-88 (95)
57 2ctf_A Vigilin; K homology typ 99.2 2.9E-12 1E-16 103.9 2.5 81 94-194 11-92 (102)
58 2ctk_A Vigilin; K homology typ 99.2 9.1E-12 3.1E-16 101.4 5.3 71 13-109 15-85 (104)
59 2ctf_A Vigilin; K homology typ 99.2 6.2E-11 2.1E-15 96.1 8.6 69 287-359 26-95 (102)
60 2ctj_A Vigilin; K homology typ 99.1 3.6E-11 1.2E-15 96.1 4.9 75 9-109 11-86 (95)
61 2cpq_A FragIle X mental retard 99.0 6.4E-10 2.2E-14 87.3 5.5 64 285-352 12-77 (91)
62 2cpq_A FragIle X mental retard 98.7 2.8E-08 9.7E-13 78.0 6.3 65 121-191 12-78 (91)
63 2yqr_A KIAA0907 protein; struc 98.6 1.1E-07 3.8E-12 78.7 9.0 73 286-358 10-101 (119)
64 2yqr_A KIAA0907 protein; struc 98.6 8.8E-08 3E-12 79.3 8.3 75 13-108 10-99 (119)
65 1k1g_A SF1-BO isoform; splicin 98.6 1.3E-07 4.4E-12 79.8 8.2 71 286-356 5-99 (131)
66 1k1g_A SF1-BO isoform; splicin 98.6 7.7E-08 2.6E-12 81.2 6.7 71 13-108 5-99 (131)
67 2bl5_A MGC83862 protein, quaki 98.3 8.7E-07 3E-11 75.2 6.3 77 15-107 2-100 (140)
68 2bl5_A MGC83862 protein, quaki 98.1 3.4E-06 1.2E-10 71.6 5.5 69 288-356 2-101 (140)
69 3v69_A Protein filia; RNA-bind 98.1 8.4E-06 2.9E-10 67.8 7.6 71 289-359 57-127 (140)
70 3u1k_A Polyribonucleotide nucl 97.9 1.2E-05 4.2E-10 84.7 7.8 62 288-354 567-629 (630)
71 3u1k_A Polyribonucleotide nucl 97.9 1.9E-05 6.5E-10 83.2 7.6 94 91-192 535-629 (630)
72 2cxc_A NUSA; transcription ter 97.6 4E-05 1.4E-09 65.4 4.6 104 15-160 36-139 (144)
73 3v69_A Protein filia; RNA-bind 97.5 0.00024 8.2E-09 59.1 7.1 68 125-194 57-124 (140)
74 2cxc_A NUSA; transcription ter 97.3 0.00013 4.4E-09 62.2 3.5 38 124-161 36-73 (144)
75 4aid_A Polyribonucleotide nucl 97.2 0.00018 6.2E-09 76.7 4.4 64 289-357 571-635 (726)
76 4aid_A Polyribonucleotide nucl 97.1 0.00025 8.7E-09 75.6 4.4 96 91-194 538-634 (726)
77 1k0r_A NUSA; two component arr 95.8 0.0089 3.1E-07 58.4 5.3 97 27-162 248-345 (366)
78 2asb_A Transcription elongatio 95.6 0.011 3.7E-07 54.7 4.8 96 27-161 125-221 (251)
79 2asb_A Transcription elongatio 95.3 0.022 7.6E-07 52.6 6.0 41 288-328 184-224 (251)
80 1k0r_A NUSA; two component arr 95.3 0.022 7.5E-07 55.7 6.2 42 287-328 306-347 (366)
81 3cdi_A Polynucleotide phosphor 94.7 0.012 4.2E-07 62.9 2.7 62 289-355 561-623 (723)
82 1e3p_A Guanosine pentaphosphat 94.2 0.0054 1.8E-07 65.9 -1.5 93 91-192 567-660 (757)
83 1e3p_A Guanosine pentaphosphat 93.9 0.0073 2.5E-07 64.9 -1.1 59 291-354 601-660 (757)
84 3cdi_A Polynucleotide phosphor 93.9 0.019 6.6E-07 61.4 2.1 96 91-194 528-624 (723)
85 1hh2_P NUSA, N utilization sub 93.8 0.065 2.2E-06 52.1 5.5 96 27-161 244-340 (344)
86 1hh2_P NUSA, N utilization sub 93.5 0.13 4.4E-06 50.0 6.9 40 287-326 302-341 (344)
87 1wh9_A 40S ribosomal protein S 73.6 1.2 4.3E-05 34.4 1.5 28 16-47 36-63 (92)
88 2pt7_G HP1451, hypothetical pr 73.2 1.5 5.2E-05 37.3 2.1 29 16-48 34-62 (152)
89 2pt7_G HP1451, hypothetical pr 61.3 3.8 0.00013 34.8 2.2 65 125-194 34-98 (152)
90 1wh9_A 40S ribosomal protein S 56.5 4.3 0.00015 31.3 1.6 29 124-152 35-63 (92)
91 3iev_A GTP-binding protein ERA 47.7 9.8 0.00033 35.8 2.9 42 11-55 236-285 (308)
92 3gku_A Probable RNA-binding pr 47.0 14 0.00046 33.5 3.5 62 94-155 62-123 (225)
93 3j20_C 30S ribosomal protein S 40.8 8.5 0.00029 34.4 1.1 27 17-47 42-68 (210)
94 3u5c_D RP13, YS3, 40S ribosoma 40.5 8.7 0.0003 35.0 1.1 28 17-48 46-73 (240)
95 2ba0_A Archeal exosome RNA bin 40.1 50 0.0017 29.7 6.2 56 290-350 138-193 (229)
96 3gku_A Probable RNA-binding pr 39.9 8.4 0.00029 34.9 0.9 32 17-52 94-125 (225)
97 2xzm_C KH domain containing pr 39.0 12 0.00039 34.3 1.7 29 16-48 48-76 (243)
98 3iz6_B 40S ribosomal protein S 37.1 8.9 0.0003 34.7 0.6 29 16-48 45-73 (227)
99 3iev_A GTP-binding protein ERA 35.9 16 0.00054 34.3 2.3 38 286-323 238-284 (308)
100 2ba0_A Archeal exosome RNA bin 34.6 63 0.0022 29.0 6.0 56 126-188 138-193 (229)
101 3r8n_C 30S ribosomal protein S 33.3 9.1 0.00031 34.1 0.0 27 17-47 63-89 (206)
102 2zkq_c 40S ribosomal protein S 32.6 11 0.00036 34.5 0.4 30 16-49 45-74 (243)
103 2z0s_A Probable exosome comple 32.4 94 0.0032 27.9 6.8 56 290-350 150-206 (235)
104 3i1m_C 30S ribosomal protein S 30.7 11 0.00036 34.4 0.0 27 17-47 64-90 (233)
105 3u5c_D RP13, YS3, 40S ribosoma 30.6 21 0.00072 32.5 2.0 27 290-316 46-72 (240)
106 2vqe_C 30S ribosomal protein S 28.7 16 0.00054 33.3 0.8 27 18-48 65-91 (239)
107 2kl8_A OR15; structural genomi 27.6 94 0.0032 21.9 4.5 45 309-356 22-66 (85)
108 3j20_C 30S ribosomal protein S 26.2 23 0.0008 31.5 1.4 27 125-151 41-67 (210)
109 3bbn_C Ribosomal protein S3; s 25.9 15 0.0005 33.1 0.0 28 17-48 72-99 (218)
110 2xzm_C KH domain containing pr 25.3 30 0.001 31.5 2.0 30 123-152 46-75 (243)
111 3iz6_B 40S ribosomal protein S 23.4 24 0.00082 31.9 1.0 29 124-152 44-72 (227)
112 1wf3_A GTP-binding protein; GT 22.8 29 0.00098 32.5 1.4 36 288-323 230-274 (301)
113 1go3_E DNA-directed RNA polyme 22.4 44 0.0015 28.8 2.5 37 287-326 6-54 (187)
114 3eik_A Tata-box-binding protei 20.7 4.4E+02 0.015 23.3 11.6 91 93-194 108-214 (218)
115 2z0s_A Probable exosome comple 20.2 2.2E+02 0.0075 25.4 6.8 57 126-189 150-207 (235)
116 3r8n_C 30S ribosomal protein S 20.1 25 0.00085 31.2 0.4 36 125-160 62-101 (206)
No 1
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.95 E-value=4.1e-28 Score=215.17 Aligned_cols=157 Identities=45% Similarity=0.853 Sum_probs=139.2
Q ss_pred CceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccch
Q psy11929 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTS 91 (433)
Q Consensus 12 ~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a 91 (433)
+.+++++|+||. +++|.||||+|++||+|+++|||+|+|++.++++|+|+|+|+.+
T Consensus 2 ~~~~~~~~~vp~----~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~-------------------- 57 (160)
T 2jzx_A 2 NVTLTIRLLMHG----KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN-------------------- 57 (160)
T ss_dssp CCEEEEEEEEEH----HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHH--------------------
T ss_pred CccEEEEEEEch----hheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHH--------------------
Confidence 467899999999 99999999999999999999999999999888999999999988
Q ss_pred HHHHHHHHHHHHhhhhhhc-ccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCcc
Q psy11929 92 VDNVCTAYNFMCRSLEDYH-INRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTER 170 (433)
Q Consensus 92 ~~~v~~A~~~I~~~~~~~~-~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er 170 (433)
++.+|+.+|.+.+.+.. ..+.+.........+++++||.+++|+||||+|++|++|+++|||+|.+.++..|.+.++
T Consensus 58 --~v~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~ 135 (160)
T 2jzx_A 58 --AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTER 135 (160)
T ss_dssp --HHHHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEE
T ss_pred --HHHHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCce
Confidence 99999999998876632 111111112345689999999999999999999999999999999999998777888999
Q ss_pred EEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 171 IVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 171 ~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
.|+|+|+++++.+|+.+|.+++.|
T Consensus 136 ~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 136 AITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999876
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=204.98 Aligned_cols=155 Identities=27% Similarity=0.384 Sum_probs=134.3
Q ss_pred CeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHhhccccCCC
Q psy11929 123 PLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKG 202 (433)
Q Consensus 123 ~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e~~~~~~~~ 202 (433)
+.+++|+||..++|.||||+|++|++|+++|||+|.|+++..+++.+|.|+|+|+++++.+|+.+|.+++.+. ..
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~---~~-- 76 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEE---NF-- 76 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT---TS--
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc---cc--
Confidence 4578999999999999999999999999999999999987678899999999999999999999999999871 00
Q ss_pred cccccCCCCCCCCCccccCCcccccCCCCCCCcccccCCCCCCCCccccccCcCCCCCCCCCccccccccCCCcccCCCC
Q psy11929 203 AVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKSGGKD 282 (433)
Q Consensus 203 ~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 282 (433)
+.|
T Consensus 77 ----~~~------------------------------------------------------------------------- 79 (163)
T 3krm_A 77 ----FGP------------------------------------------------------------------------- 79 (163)
T ss_dssp ----SCS-------------------------------------------------------------------------
T ss_pred ----ccc-------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC---CCceEEEEEeCHHHHHHHHHHHHHHHHhccc
Q psy11929 283 TGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE---SHKKMFHIQGCQEAVSLAQYLINMCIELQKN 359 (433)
Q Consensus 283 ~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~---~~er~V~IsGt~e~v~~A~~lI~~~i~~~~~ 359 (433)
......+.+|.||..++|+||||+|++|++|++.|||+|+|++... .+++.|+|+|++++|++|+.+|.+++++.+.
T Consensus 80 ~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 80 KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHHHH
Confidence 0012456799999999999999999999999999999999987653 4455899999999999999999999987543
No 3
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=205.23 Aligned_cols=151 Identities=22% Similarity=0.351 Sum_probs=132.8
Q ss_pred eEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCC---CCCcceEEEecccCCCCCCccccCCCCCccccc
Q psy11929 14 LITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG---ACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVT 90 (433)
Q Consensus 14 ~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~---~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~ 90 (433)
+-+++|+||. +++|.||||+|++||+|+++|||+|+|++. ++.+|+|+|+|+++
T Consensus 2 ~~~~~~~ip~----~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e------------------- 58 (163)
T 3krm_A 2 QEMVQVFIPA----QAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE------------------- 58 (163)
T ss_dssp CEEEEEEEEG----GGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHH-------------------
T ss_pred ceEEEEEech----hhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHH-------------------
Confidence 3589999999 999999999999999999999999999874 57899999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCcc
Q psy11929 91 SVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTER 170 (433)
Q Consensus 91 a~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er 170 (433)
++.+|+.+|.+.+.+... + ........+.+|+||..++|+||||+|++|++|+++|||+|.++++..|..+++
T Consensus 59 ---~v~~A~~~I~~~~~e~~~-~---~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~ 131 (163)
T 3krm_A 59 ---AQFKAQGRIYGKLKEENF-F---GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQ 131 (163)
T ss_dssp ---HHHHHHHHHHHHHHHTTS-S---CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSE
T ss_pred ---HHHHHHHHHHHHHhcccc-c---ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCc
Confidence 999999999998876421 0 111244678899999999999999999999999999999999998766665554
Q ss_pred -EEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 171 -IVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 171 -~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
.|+|+|++++|.+|+.+|.+++.+
T Consensus 132 ~~v~I~G~~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 132 VIVKIIGHFYASQMAQRKIRDILAQ 156 (163)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998
No 4
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.94 E-value=7e-27 Score=210.88 Aligned_cols=157 Identities=26% Similarity=0.454 Sum_probs=132.5
Q ss_pred CceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCC-----CCCcceEEEecccCCCCCCccccCCCCCc
Q psy11929 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG-----ACPDRIVTVSGSVDNSSTSSVETGYPGHT 86 (433)
Q Consensus 12 ~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~-----~~~eRvv~I~G~~~~~~~~~v~~~~~~~~ 86 (433)
..+++++|+||. +++|.||||+|++||+|+++|||+|+|++. ++.+|+|+|+|+.+
T Consensus 3 ~~~~~~~i~vp~----~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~--------------- 63 (178)
T 2anr_A 3 GSQYFLKVLIPS----YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE--------------- 63 (178)
T ss_dssp CCCEEEEEEEEH----HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHH---------------
T ss_pred CCCEEEEEEECh----hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHH---------------
Confidence 467999999999 999999999999999999999999999863 57899999999999
Q ss_pred cccchHHHHHHHHHHHHhhhhhhcccccCC----------CCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCce
Q psy11929 87 LWVTSVDNVCTAYNFMCRSLEDYHINRNRM----------ENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGAN 156 (433)
Q Consensus 87 ~~~~a~~~v~~A~~~I~~~~~~~~~~~~~~----------~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~ 156 (433)
++.+|+.+|.+++.+........ ........+++|+||.+++|+||||+|++|++|+++|||+
T Consensus 64 -------~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~ 136 (178)
T 2anr_A 64 -------ALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAW 136 (178)
T ss_dssp -------HHHHHHHHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCE
T ss_pred -------HHHHHHHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCE
Confidence 99999999999887643211000 0011234789999999999999999999999999999999
Q ss_pred EEeccC-CCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 157 VQVASD-MLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 157 I~i~~~-~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
|.+.++ ..+.+.++.|+|+|+++++.+|+.+|.++|++
T Consensus 137 I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 137 VQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp EEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 999864 24566889999999999999999999999998
No 5
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.94 E-value=2.3e-26 Score=207.46 Aligned_cols=169 Identities=26% Similarity=0.385 Sum_probs=135.4
Q ss_pred CCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEecc--CCCCCCCccEEEEEccHHHHHHHHHHHHHHHHhhccc
Q psy11929 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQ 198 (433)
Q Consensus 121 ~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~--~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e~~~~ 198 (433)
...++++|+||..++|.||||+|++|++|+++|||+|+|.+ +..+++.+|.|+|+|+.+++.+|+.+|.+++.+ .
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~---~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIRE---M 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTC---C
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhc---c
Confidence 45789999999999999999999999999999999999986 346778999999999999999999999999987 2
Q ss_pred cCCCcccccCCCCCCCCCccccCCcccccCCCCCCCcccccCCCCCCCCccccccCcCCCCCCCCCccccccccCCCccc
Q psy11929 199 VVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKS 278 (433)
Q Consensus 199 ~~~~~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 278 (433)
+.... .. .+. .+ +++.
T Consensus 80 ~~~~~----~~-----~~~------------~~-~~~~------------------------------------------ 95 (178)
T 2anr_A 80 PQNVA----KT-----EPV------------SI-LQPQ------------------------------------------ 95 (178)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCccc----cC-----Ccc------------cc-cCCc------------------------------------------
Confidence 21100 00 000 00 0000
Q ss_pred CCCCCCCCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC---CCceEEEEEeCHHHHHHHHHHHHHHHH
Q psy11929 279 GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE---SHKKMFHIQGCQEAVSLAQYLINMCIE 355 (433)
Q Consensus 279 ~~~~~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~---~~er~V~IsGt~e~v~~A~~lI~~~i~ 355 (433)
.........+.+|.||.+++|+||||+|++|++|++.|||+|+|.+... +.++.|+|+|+++++++|+.+|.++|.
T Consensus 96 -~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 96 -TTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQ 174 (178)
T ss_dssp -----CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred -cCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 0000123568899999999999999999999999999999999998643 678999999999999999999999997
Q ss_pred hc
Q psy11929 356 LQ 357 (433)
Q Consensus 356 ~~ 357 (433)
+.
T Consensus 175 e~ 176 (178)
T 2anr_A 175 ED 176 (178)
T ss_dssp SC
T ss_pred hC
Confidence 64
No 6
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=198.68 Aligned_cols=158 Identities=22% Similarity=0.341 Sum_probs=130.5
Q ss_pred eEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCC-CCCCCccEEEEEccHHHHHHHHHHHHHHHHhhccccCCC
Q psy11929 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDM-LPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKG 202 (433)
Q Consensus 124 ~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~-~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e~~~~~~~~ 202 (433)
++.+|+||..++|.||||+|++|++|+++|||+|.+.++. .+...+|.|+|+|+++++.+|+.+|.+++.+. ...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~---~~~- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRER---DQG- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCS---SSC-
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc---cCC-
Confidence 5789999999999999999999999999999999998642 35678899999999999999999999998761 100
Q ss_pred cccccCCCCCCCCCccccCCcccccCCCCCCCcccccCCCCCCCCccccccCcCCCCCCCCCccccccccCCCcccCCCC
Q psy11929 203 AVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKSGGKD 282 (433)
Q Consensus 203 ~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 282 (433)
.|.|. .. |.
T Consensus 78 ---~~~~~------------------~~-------------------------------------~~------------- 86 (164)
T 2jvz_A 78 ---GFGDR------------------NE-------------------------------------YG------------- 86 (164)
T ss_dssp ---CCSSC------------------SS-------------------------------------CT-------------
T ss_pred ---CCCCc------------------cc-------------------------------------cC-------------
Confidence 00000 00 00
Q ss_pred CCCCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC-CCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 283 TGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 283 ~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
.....+.+|.||.+++|+||||+|.+|++|++.|||+|+|++..+ +.++.|+|+|++++++.|+.+|.++++..
T Consensus 87 -~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 87 -SRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp -TSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 001234688999999999999999999999999999999998765 66899999999999999999999999764
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.93 E-value=1.1e-25 Score=202.40 Aligned_cols=153 Identities=21% Similarity=0.378 Sum_probs=127.3
Q ss_pred eEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeC--CCCCcceEEEecccCCCCCCccccCCCCCccccch
Q psy11929 14 LITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITD--GACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTS 91 (433)
Q Consensus 14 ~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~--~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a 91 (433)
..+++|+||. +++|.||||+|++||+|+++|||+|+|.+ +++.+|+|+|+|+++
T Consensus 2 ~~~~~~~vp~----~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~-------------------- 57 (174)
T 1j4w_A 2 SHMIDVPIPR----FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPD-------------------- 57 (174)
T ss_dssp CEEEEEEEEH----HHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHH--------------------
T ss_pred CeEEEEEECh----hheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHH--------------------
Confidence 4689999999 99999999999999999999999999985 367899999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCCC----------------CCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCc
Q psy11929 92 VDNVCTAYNFMCRSLEDYHINRNRME----------------NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGA 155 (433)
Q Consensus 92 ~~~v~~A~~~I~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga 155 (433)
++.+|+.+|.+++.+......... .......+++|+||.+++|+||||+|++|++|+++|||
T Consensus 58 --~v~~A~~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga 135 (174)
T 1j4w_A 58 --RAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGA 135 (174)
T ss_dssp --HHHHHHHHHHHHHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCC
Confidence 999999999998877532110000 00123468899999999999999999999999999999
Q ss_pred eEEeccCCC--CCCCccEEEEEccHHHHHHHHHHHHHHH
Q psy11929 156 NVQVASDML--PMSTERIVTVHGNPDTISQAIYQICLVL 192 (433)
Q Consensus 156 ~I~i~~~~~--~~~~er~v~I~G~~~~v~~A~~~I~~~l 192 (433)
+|.|.++.. .++.++.|+|+|+++++.+|+.+|.++|
T Consensus 136 ~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 136 RIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 999986532 2467899999999999999999998764
No 8
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=197.72 Aligned_cols=156 Identities=26% Similarity=0.381 Sum_probs=131.3
Q ss_pred CCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHhhccccC
Q psy11929 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200 (433)
Q Consensus 121 ~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e~~~~~~ 200 (433)
+.+++++|+||..++|.||||+|++|++|+++|||+|.++++ ++.+|.|+|.|+.+++.+|+.+|.+++.+.. .
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~---~ 75 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG---NCPERIITLAGPTNAIFKAFAMIIDKLEEDI---S 75 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC---TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHH---T
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhhc---c
Confidence 356789999999999999999999999999999999999864 4678999999999999999999999988721 1
Q ss_pred CCcccccCCCCCCCCCccccCCcccccCCCCCCCcccccCCCCCCCCccccccCcCCCCCCCCCccccccccCCCcccCC
Q psy11929 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKSGG 280 (433)
Q Consensus 201 ~~~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 280 (433)
. +. +..
T Consensus 76 ~-------~~-----------------------~~~-------------------------------------------- 81 (160)
T 2jzx_A 76 S-------SM-----------------------TNS-------------------------------------------- 81 (160)
T ss_dssp S-------CC-----------------------CSS--------------------------------------------
T ss_pred c-------cC-----------------------CCC--------------------------------------------
Confidence 0 00 000
Q ss_pred CCCCCCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC--CCceEEEEEeCHHHHHHHHHHHHHHHHh
Q psy11929 281 KDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE--SHKKMFHIQGCQEAVSLAQYLINMCIEL 356 (433)
Q Consensus 281 ~~~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~--~~er~V~IsGt~e~v~~A~~lI~~~i~~ 356 (433)
........+.+|.||.+++|+||||+|++|++|++.|||+|+|++... +.++.|+|+|+++++++|+.+|.+++.+
T Consensus 82 ~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 82 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 000112468899999999999999999999999999999999986432 7889999999999999999999998864
No 9
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=198.85 Aligned_cols=153 Identities=21% Similarity=0.315 Sum_probs=130.1
Q ss_pred EEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCC----CCCcceEEEecccCCCCCCccccCCCCCccccc
Q psy11929 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG----ACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVT 90 (433)
Q Consensus 15 ~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~----~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~ 90 (433)
++++|+||. +++|.||||+|++||+|+++|||+|+|.+. +..+|+|+|+|+++
T Consensus 2 ~~~~~~Vp~----~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~------------------- 58 (164)
T 2jvz_A 2 TVQEIMIPA----GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPY------------------- 58 (164)
T ss_dssp EEEEEEECT----TCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHH-------------------
T ss_pred eEEEEEech----hheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHH-------------------
Confidence 688999999 999999999999999999999999999753 46789999999988
Q ss_pred hHHHHHHHHHHHHhhhhhhccc-ccCCC-CCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCC
Q psy11929 91 SVDNVCTAYNFMCRSLEDYHIN-RNRME-NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST 168 (433)
Q Consensus 91 a~~~v~~A~~~I~~~~~~~~~~-~~~~~-~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~ 168 (433)
++.+|..+|.+++.+.... +.... .......+++|.||..++|+||||+|++|++|+++|||+|.|.++ .+.+.
T Consensus 59 ---~v~~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~-~~~~~ 134 (164)
T 2jvz_A 59 ---KVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD-DGTGP 134 (164)
T ss_dssp ---HHHHHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCC-CTTSS
T ss_pred ---HHHHHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCC-CCCCC
Confidence 9999999999988764321 11110 011123568899999999999999999999999999999999864 24566
Q ss_pred ccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 169 ERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 169 er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
++.|+|+|+++++..|+.+|.+++.+
T Consensus 135 ~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 135 EKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999987
No 10
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.92 E-value=3.6e-25 Score=198.90 Aligned_cols=169 Identities=28% Similarity=0.423 Sum_probs=127.7
Q ss_pred CeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHhhccccCCC
Q psy11929 123 PLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKG 202 (433)
Q Consensus 123 ~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e~~~~~~~~ 202 (433)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.++ .+.+.+|.|+|+|++++|.+|+.+|.+++.+.. . +
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~---~-~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-DGTTPERIAQITGPPDRAQHAAEIITDLLRSVQ---A-G 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECC-TTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecC-CCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc---c-C
Confidence 3578999999999999999999999999999999999853 346788999999999999999999999998721 0 0
Q ss_pred cccccCCCCCCCCCccccCCcccccCCCCCCCcccccCCCCCCCCccccccCcCCCCCCCCCccccccccCCCcccCCCC
Q psy11929 203 AVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKSGGKD 282 (433)
Q Consensus 203 ~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 282 (433)
.+.+. .| ++.++ +.....|.+ .
T Consensus 77 ---~~~~~----~p----~~~~~----------------------------~~~~~~~~~-------------------~ 98 (174)
T 1j4w_A 77 ---NPGGP----GP----GGRGR----------------------------GRGQGNWNM-------------------G 98 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---CCCCC----CC----CCCCC----------------------------CCCCCcccc-------------------C
Confidence 00000 00 00000 000000000 0
Q ss_pred CCCCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC----CCceEEEEEeCHHHHHHHHHHHHHHH
Q psy11929 283 TGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSLAQYLINMCI 354 (433)
Q Consensus 283 ~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~----~~er~V~IsGt~e~v~~A~~lI~~~i 354 (433)
+.....+.+|.||.+++|+||||+|++|++|++.|||+|+|++... +.++.|+|+|+++++++|+.+|.++|
T Consensus 99 ~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 99 PPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp -----CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 0113467899999999999999999999999999999999987642 67899999999999999999999874
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.92 E-value=1.2e-24 Score=213.99 Aligned_cols=221 Identities=12% Similarity=0.083 Sum_probs=167.3
Q ss_pred CCCceEEEEEEeccCCcccccceeeecCc--hHHHHHHHHhCCeEEEeCCC-------CCcceEEEecccCCCCCCcccc
Q psy11929 10 DEDTLITMRCLFHSSVNVNEISCLIGPGG--CIVRRLRKESGAKISITDGA-------CPDRIVTVSGSVDNSSTSSVET 80 (433)
Q Consensus 10 ~~~~~~~~rilvp~~~~~~~vg~IIGk~G--~~Ik~I~~~tga~I~v~~~~-------~~eRvv~I~G~~~~~~~~~v~~ 80 (433)
.....+++.+.||. .+++.||||+| ++|++|+++|||+|+|++.+ .....|+|+|.++
T Consensus 25 ~~~~~VTl~v~Ip~----~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~e--------- 91 (376)
T 3n89_A 25 INPTRVTLNMEFES----QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFG--------- 91 (376)
T ss_dssp CCTTEEEEEEECCG----GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHH---------
T ss_pred ecCCEEEEEEEEch----hhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHH---------
Confidence 34678999999999 99999999999 99999999999999999854 3457899999999
Q ss_pred CCCCCccccchHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEec
Q psy11929 81 GYPGHTLWVTSVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVA 160 (433)
Q Consensus 81 ~~~~~~~~~~a~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~ 160 (433)
+|.+|..+|.+.+ ++++.+.+|...++. ...+..|.+ ++.++++|.|+
T Consensus 92 -------------nVE~AR~~I~~l~----------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp 139 (376)
T 3n89_A 92 -------------DVDRARMLMRRNC----------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFV 139 (376)
T ss_dssp -------------HHHHHHHHHHHSC----------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEE
T ss_pred -------------HHHHHHHHHHhcC----------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeC
Confidence 9999999998632 445666666644332 111334544 56799999997
Q ss_pred cCCC-CCCCccEEEEEccHHHHHHHHHHHHHHHHhhccccCCCcccccCCCCCCCCCccccCCcccccCCCCCCCccccc
Q psy11929 161 SDML-PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVA 239 (433)
Q Consensus 161 ~~~~-~~~~er~v~I~G~~~~v~~A~~~I~~~l~e~~~~~~~~~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~ 239 (433)
.... .......|+|+|...++.+|++.+..++....+..
T Consensus 140 ~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e---------------------------------------- 179 (376)
T 3n89_A 140 DAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRES---------------------------------------- 179 (376)
T ss_dssp EEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC------------------------------------------
T ss_pred CcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhh----------------------------------------
Confidence 5311 11235689999999888877777766665511000
Q ss_pred CCCCCCCCccccccCcCCCCCCCCCccccccccCCCcccCCCCCCCCceEEEEEeCcccccccccCCC--chHHHHHhHh
Q psy11929 240 GKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAG--SRLLEIRQIS 317 (433)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~VP~~~vG~IIGkgG--~~Ik~I~~~s 317 (433)
......++.+|.|+..++..||||+| ..|++|+++|
T Consensus 180 ------------------------------------------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eT 217 (376)
T 3n89_A 180 ------------------------------------------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERET 217 (376)
T ss_dssp ------------------------------------------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHH
T ss_pred ------------------------------------------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhh
Confidence 00123578899999999999999999 5569999999
Q ss_pred CCeEEEccCCC-----CCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 318 GAQINIHTGTE-----SHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 318 GA~I~I~~~~~-----~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
||+|.|++..+ .+...|+|+|++++|..|+..|+++|--.
T Consensus 218 Gv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLPv~ 262 (376)
T 3n89_A 218 TTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLLPIS 262 (376)
T ss_dssp TCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTSEEE
T ss_pred CCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhCCEE
Confidence 99999997643 24578999999999999999999988543
No 12
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.78 E-value=8.8e-19 Score=151.94 Aligned_cols=133 Identities=23% Similarity=0.378 Sum_probs=106.3
Q ss_pred CeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHhhccccCCC
Q psy11929 123 PLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKG 202 (433)
Q Consensus 123 ~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e~~~~~~~~ 202 (433)
.++.+|+||...+|.+||++|++|+.|++++|++|....+ ..++.+...+++++|.+|..++ +
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~----~~~~~i~~~~~p~~v~~~~~~l-----~-------- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE----DTCTFHIYGEDQDAVKKARSFL-----E-------- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET----TTTEEEEEESSHHHHHHHHHHH-----C--------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC----CchheeeccCCHHHHHHHHHhh-----h--------
Confidence 4678999999999999999999999999999954433322 2344555556799998885431 1
Q ss_pred cccccCCCCCCCCCccccCCcccccCCCCCCCcccccCCCCCCCCccccccCcCCCCCCCCCccccccccCCCcccCCCC
Q psy11929 203 AVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKSGGKD 282 (433)
Q Consensus 203 ~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 282 (433)
T Consensus 66 -------------------------------------------------------------------------------- 65 (144)
T 2qnd_A 66 -------------------------------------------------------------------------------- 65 (144)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEEEeCcccccccccCCCchHHHHHhHhCC-eEEEccCCC----CCc--eEEEEEeCHHHHHHHHHHHHHHHH
Q psy11929 283 TGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGA-QINIHTGTE----SHK--KMFHIQGCQEAVSLAQYLINMCIE 355 (433)
Q Consensus 283 ~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA-~I~I~~~~~----~~e--r~V~IsGt~e~v~~A~~lI~~~i~ 355 (433)
....++.||.+++|++|||+|.+|+.|++.||| +|+|++..+ .++ +.|+|+|++++++.|+.||.++|.
T Consensus 66 ----~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 66 ----FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLN 141 (144)
T ss_dssp ----EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ----cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHH
Confidence 002589999999999999999999999999997 899987543 123 358999999999999999999997
Q ss_pred h
Q psy11929 356 L 356 (433)
Q Consensus 356 ~ 356 (433)
+
T Consensus 142 ~ 142 (144)
T 2qnd_A 142 Y 142 (144)
T ss_dssp T
T ss_pred h
Confidence 5
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.77 E-value=7.8e-19 Score=152.24 Aligned_cols=134 Identities=22% Similarity=0.276 Sum_probs=106.7
Q ss_pred eEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeC-CCCCcceEEEecccCCCCCCccccCCCCCccccchH
Q psy11929 14 LITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITD-GACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTSV 92 (433)
Q Consensus 14 ~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~-~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a~ 92 (433)
.++.+++||. +.+|++||++|++|++|++++| |++.. ...+++++...++++
T Consensus 3 ~~~~~~~Vp~----~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~~~~~i~~~~~p~--------------------- 55 (144)
T 2qnd_A 3 RFHEQFIVRE----DLMGLAIGTHGANIQQARKVPG--VTAIDLDEDTCTFHIYGEDQD--------------------- 55 (144)
T ss_dssp -CEEEEECCG----GGHHHHHCGGGHHHHHHHTSTT--EEEEEEETTTTEEEEEESSHH---------------------
T ss_pred ceEEEEEECC----cceeeEECCChhHHHHHHHHHC--CeEeccCCCchheeeccCCHH---------------------
Confidence 5688999999 9999999999999999999999 55433 233555555555677
Q ss_pred HHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCc-eEEeccCCCC--CCCc
Q psy11929 93 DNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGA-NVQVASDMLP--MSTE 169 (433)
Q Consensus 93 ~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga-~I~i~~~~~~--~~~e 169 (433)
++.+|..++ ... ..++.||..++|++|||+|++|+.|++.||+ +|.|.++... ..++
T Consensus 56 -~v~~~~~~l-~~~------------------e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~ 115 (144)
T 2qnd_A 56 -AVKKARSFL-EFA------------------EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEE 115 (144)
T ss_dssp -HHHHHHHHH-CEE------------------EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCT
T ss_pred -HHHHHHHhh-hcc------------------eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccC
Confidence 888876543 110 2789999999999999999999999999997 9999864221 2233
Q ss_pred c--EEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 170 R--IVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 170 r--~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
+ .|+|+|++++|+.|+.+|..+|.+
T Consensus 116 ~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 116 GMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp TEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred CeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 3 589999999999999999999875
No 14
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.71 E-value=2.5e-17 Score=151.80 Aligned_cols=149 Identities=20% Similarity=0.197 Sum_probs=111.8
Q ss_pred ceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccchH
Q psy11929 13 TLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTSV 92 (433)
Q Consensus 13 ~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a~ 92 (433)
..-+.++.||. ..+|.|||++|++|+.|+++|||+|++.. .++.|+|.++..- ...
T Consensus 32 aP~i~~i~IP~----~kig~lIG~gGk~Ik~I~e~tgvkI~I~~---~~g~V~I~~~~~t-----------------~d~ 87 (219)
T 2e3u_A 32 FKQEEYVKIPK----DRIAVLIGKKGQTKKEIEKRTKTKITIDS---ETGEVWITSTKET-----------------EDP 87 (219)
T ss_dssp -CCEEEEECCH----HHHHHHHCGGGHHHHHHHHHHTEEEEECT---TTCEEEEEECTTC-----------------CSH
T ss_pred CCEEEEEEeCH----HHhhhhhcccHHHHHHHHHHHCcEEEEEc---CCCEEEEecCCCC-----------------CCH
Confidence 34567999999 99999999999999999999999999984 3567999987620 001
Q ss_pred HHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEecc-----------CcccceecCCchhHHHHHHhhCceEEecc
Q psy11929 93 DNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPA-----------THCGSLIGKGGCKIKDIRDLSGANVQVAS 161 (433)
Q Consensus 93 ~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~-----------~~vg~iIGk~G~~Ik~I~~~sga~I~i~~ 161 (433)
+++.+|.++|..+...+........ ..+....-.+.++. ..+|+||||+|++|+.|++.|||+|.|.
T Consensus 88 ~~i~kA~~~I~~i~rg~~~e~g~~l-l~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~- 165 (219)
T 2e3u_A 88 LAVWKARDIVLAIGRGFSPERAFRL-LNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY- 165 (219)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHGGG-GSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE-
T ss_pred HHHHHHHHHHHHHhccCCcccccee-ccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC-
Confidence 2899999999887632110000000 00111112233332 2689999999999999999999999996
Q ss_pred CCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 162 DMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 162 ~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
++.|+|.|+.++++.|..+|.+++..
T Consensus 166 -------~~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 166 -------GKTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp -------TTEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred -------CeEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999999976
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.67 E-value=1.6e-16 Score=146.33 Aligned_cols=145 Identities=20% Similarity=0.180 Sum_probs=111.4
Q ss_pred CCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEcc-----HHHHHHHHHHHHHHHHhh
Q psy11929 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN-----PDTISQAIYQICLVLIEC 195 (433)
Q Consensus 121 ~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~-----~~~v~~A~~~I~~~l~e~ 195 (433)
..+...++.||.+.+|.|||++|++|+.|+++||++|.+..+ ++.|+|.++ ++++.+|..+|..+.+.
T Consensus 31 ~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~------~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg- 103 (219)
T 2e3u_A 31 FFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE------TGEVWITSTKETEDPLAVWKARDIVLAIGRG- 103 (219)
T ss_dssp --CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT------TCEEEEEECTTCCSHHHHHHHHHHHHHHHTT-
T ss_pred CCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC------CCEEEEecCCCCCCHHHHHHHHHHHHHHhcc-
Confidence 345567899999999999999999999999999999999743 577888885 69999999999998854
Q ss_pred ccccCCCcccccCCCCCCCCCccccCCcccccCCCCCCCcccccCCCCCCCCccccccCcCCCCCCCCCccccccccCCC
Q psy11929 196 TLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSR 275 (433)
Q Consensus 196 ~~~~~~~~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 275 (433)
..+......+..
T Consensus 104 --~~~e~g~~ll~d------------------------------------------------------------------ 115 (219)
T 2e3u_A 104 --FSPERAFRLLNE------------------------------------------------------------------ 115 (219)
T ss_dssp --CCHHHHGGGGST------------------------------------------------------------------
T ss_pred --CCccccceeccC------------------------------------------------------------------
Confidence 111000000000
Q ss_pred cccCCCCCCCCceEEEEEe-----------CcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHH
Q psy11929 276 VKSGGKDTGDDFVETEIVL-----------TDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVS 344 (433)
Q Consensus 276 ~~~~~~~~~~~~~t~~i~V-----------P~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~ 344 (433)
......+.+ +...+|+||||+|.+|+.|++.|||+|.|++ +.|+|.|++++++
T Consensus 116 ----------d~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------~~v~i~G~~~~i~ 179 (219)
T 2e3u_A 116 ----------GEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------KTVAIIGNPIQIE 179 (219)
T ss_dssp ----------TCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------TEEEEEECHHHHH
T ss_pred ----------CccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------eEEEEEeCHHHHH
Confidence 000001111 2347899999999999999999999999975 5699999999999
Q ss_pred HHHHHHHHHHHh
Q psy11929 345 LAQYLINMCIEL 356 (433)
Q Consensus 345 ~A~~lI~~~i~~ 356 (433)
.|+.+|.++|..
T Consensus 180 ~A~~~i~~li~g 191 (219)
T 2e3u_A 180 IAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999999954
No 16
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.62 E-value=1.7e-15 Score=118.38 Aligned_cols=72 Identities=35% Similarity=0.622 Sum_probs=67.2
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC-CCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|++... +.+|.|+|+|+++++++|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999999999998654 78899999999999999999999999764
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.61 E-value=8e-16 Score=118.54 Aligned_cols=72 Identities=40% Similarity=0.716 Sum_probs=67.0
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC-CCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
...+.+|.||.+++|+||||+|++|++|++.|||+|+|+++.+ +.+|.|+|+|+++++++|+.+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 3678899999999999999999999999999999999998655 78999999999999999999999999764
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.60 E-value=1.2e-15 Score=119.24 Aligned_cols=72 Identities=39% Similarity=0.671 Sum_probs=66.1
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC-CCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|++..+ +.+|.|+|+|+++++++|+.+|.+++.++
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999999999999999999999998654 78999999999999999999999999765
No 19
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.60 E-value=2.2e-15 Score=135.43 Aligned_cols=140 Identities=16% Similarity=0.238 Sum_probs=111.1
Q ss_pred EEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCCCCcceEEEe-----cccCCCCCCccccCCCCCccccc
Q psy11929 16 TMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVS-----GSVDNSSTSSVETGYPGHTLWVT 90 (433)
Q Consensus 16 ~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~eRvv~I~-----G~~~~~~~~~v~~~~~~~~~~~~ 90 (433)
.++++||. +.+|.|||++|++++.|++++||+|.+.. .++.|+|. |.+.
T Consensus 5 ~~~i~VP~----~rvg~liGk~g~~~k~i~e~~g~~i~id~---~~~~V~i~t~~~t~dp~------------------- 58 (191)
T 1tua_A 5 RIYVKVKP----ERLGAVIGPRGEVKAEIMRRTGTVITVDT---ENSMVIVEPEAEGIPPV------------------- 58 (191)
T ss_dssp CEEEECCG----GGHHHHHCGGGHHHHHHHHHHTEEEEEET---TTTEEEEEESSTTSCHH-------------------
T ss_pred ceEEECCH----HHhhHHHhcCHhHHHHHHHHHCcEEEEEc---CCCeEEEEeCCCCCCHH-------------------
Confidence 36899999 99999999999999999999999999975 57888998 4444
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEE-EEecc----------CcccceecCCchhHHHHHHhhCceEEe
Q psy11929 91 SVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLK-LVIPA----------THCGSLIGKGGCKIKDIRDLSGANVQV 159 (433)
Q Consensus 91 a~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~-l~ip~----------~~vg~iIGk~G~~Ik~I~~~sga~I~i 159 (433)
++.+|.++|......+...-. .....+...+. +.++. ...|+||||+|.+|+.|+..|||+|.|
T Consensus 59 ---~i~KA~dlI~ai~rgf~~e~A--~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v 133 (191)
T 1tua_A 59 ---NLMKAAEVVKAISLGFPPEKA--FRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINV 133 (191)
T ss_dssp ---HHHHHHHHHHHHHHTCCHHHH--GGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEE
T ss_pred ---HHHHHHHHHHHHHcCCCHHHh--hhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEE
Confidence 899999999877665421100 00001223333 33442 358999999999999999999999999
Q ss_pred ccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 160 ASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 160 ~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
. ++.|.|.|+.++++.|...|.+++..
T Consensus 134 ~--------~~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 134 G--------EYEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp C--------SSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred c--------CCEEEEEeChHHHHHHHHHHHHHHcC
Confidence 6 35899999999999999999999865
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.58 E-value=1.2e-15 Score=116.42 Aligned_cols=71 Identities=37% Similarity=0.800 Sum_probs=66.9
Q ss_pred CceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccch
Q psy11929 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTS 91 (433)
Q Consensus 12 ~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a 91 (433)
...++++|+||. +++|.||||+|++||+|+++|||+|+|++.++++|+|+|+|+++
T Consensus 2 ~~~~~~~i~ip~----~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~-------------------- 57 (73)
T 2axy_A 2 NVTLTIRLLMHG----KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN-------------------- 57 (73)
T ss_dssp CCCEEEEEEEEH----HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHH--------------------
T ss_pred CceEEEEEEECh----hHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHH--------------------
Confidence 356899999999 99999999999999999999999999999888999999999998
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy11929 92 VDNVCTAYNFMCRSLED 108 (433)
Q Consensus 92 ~~~v~~A~~~I~~~~~~ 108 (433)
++.+|..+|.+++.+
T Consensus 58 --~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 58 --AIFKAFAMIIDKLEE 72 (73)
T ss_dssp --HHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHhc
Confidence 999999999998864
No 21
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.58 E-value=2.7e-15 Score=115.59 Aligned_cols=70 Identities=29% Similarity=0.532 Sum_probs=63.7
Q ss_pred ceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC----CCceEEEEEeCHHHHHHHHHHHHHHHHh
Q psy11929 287 FVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSLAQYLINMCIEL 356 (433)
Q Consensus 287 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~----~~er~V~IsGt~e~v~~A~~lI~~~i~~ 356 (433)
..+.+|.||.+++|+||||+|++|++|++.|||+|+|++..+ +.+|.|+|+|+++++++|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999998632 6789999999999999999999998864
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.58 E-value=2.5e-15 Score=114.76 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=65.7
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIEL 356 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i~~ 356 (433)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|++.. ..+|.|+|+|+++++++|+.+|.++|.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~-~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-CPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSC-CSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCC-CCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999999875 6799999999999999999999999975
No 23
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.57 E-value=3e-15 Score=118.90 Aligned_cols=74 Identities=35% Similarity=0.635 Sum_probs=68.3
Q ss_pred CCCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC-CCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 284 GDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 284 ~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
.....+.+|.||.+++|+||||+|++|++|+++|||+|+|++... +.+|.|+|+|+++++++|+.+|.+++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 346889999999999999999999999999999999999998654 78899999999999999999999999764
No 24
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.56 E-value=1e-14 Score=116.48 Aligned_cols=73 Identities=25% Similarity=0.444 Sum_probs=68.1
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC-CCceEEEEEeCHHHHHHHHHHHHHHHHhcc
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINMCIELQK 358 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-~~er~V~IsGt~e~v~~A~~lI~~~i~~~~ 358 (433)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|++..+ ..+|.|+|+|+++++++|+.+|.++++...
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 4688999999999999999999999999999999999998765 778999999999999999999999998754
No 25
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.56 E-value=1e-14 Score=131.10 Aligned_cols=139 Identities=22% Similarity=0.253 Sum_probs=111.4
Q ss_pred EEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEE-----ccHHHHHHHHHHHHHHHHhhccccC
Q psy11929 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVH-----GNPDTISQAIYQICLVLIECTLQVV 200 (433)
Q Consensus 126 ~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~-----G~~~~v~~A~~~I~~~l~e~~~~~~ 200 (433)
.+++||...+|.|||++|++++.|++.+|++|.+.. .++.|+|. |++.++.+|..+|..+.+. +++
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rg---f~~ 76 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLG---FPP 76 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHT---CCH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC---CCH
Confidence 689999999999999999999999999999999974 37788998 9999999999999998876 221
Q ss_pred CCcccccCCCCCCCCCccccCCcccccCCCCCCCcccccCCCCCCCCccccccCcCCCCCCCCCccccccccCCCcccCC
Q psy11929 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKSGG 280 (433)
Q Consensus 201 ~~~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 280 (433)
..+.-.+.
T Consensus 77 e~A~~Ll~------------------------------------------------------------------------ 84 (191)
T 1tua_A 77 EKAFRLLE------------------------------------------------------------------------ 84 (191)
T ss_dssp HHHGGGGS------------------------------------------------------------------------
T ss_pred HHhhhccc------------------------------------------------------------------------
Confidence 11000000
Q ss_pred CCCCCCceEEEEEe----------CcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHH
Q psy11929 281 KDTGDDFVETEIVL----------TDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLI 350 (433)
Q Consensus 281 ~~~~~~~~t~~i~V----------P~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI 350 (433)
.......+.+ +....|+||||+|.+|+.|+..|||+|.|.+ +.|.|.|++++++.|+..|
T Consensus 85 ----Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------~~v~i~G~~~~i~~Ar~~i 154 (191)
T 1tua_A 85 ----EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------YEVAIIGDYERAMAAKQAI 154 (191)
T ss_dssp ----TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS------SEEEEEEEHHHHHHHHHHH
T ss_pred ----CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC------CEEEEEeChHHHHHHHHHH
Confidence 0001111222 2347899999999999999999999999986 3699999999999999999
Q ss_pred HHHHH
Q psy11929 351 NMCIE 355 (433)
Q Consensus 351 ~~~i~ 355 (433)
..+|.
T Consensus 155 ~~li~ 159 (191)
T 1tua_A 155 EMLAE 159 (191)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99995
No 26
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=115.03 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=63.8
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIEL 356 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i~~ 356 (433)
.+.+.+|.||.+++|+||||+|++||+|+++|||+|+|++.. +++.|+|+|+++++++|+.+|.+++..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC--CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999754 468999999999999999999998764
No 27
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.55 E-value=6.4e-15 Score=144.99 Aligned_cols=189 Identities=8% Similarity=0.048 Sum_probs=126.7
Q ss_pred CCCCeEEEEEeccCcccceecCCc--hhHHHHHHhhCceEEeccCC----CCCCCccEEEEEccHHHHHHHHHHHHHHHH
Q psy11929 120 SPQPLQLKLVIPATHCGSLIGKGG--CKIKDIRDLSGANVQVASDM----LPMSTERIVTVHGNPDTISQAIYQICLVLI 193 (433)
Q Consensus 120 ~~~~~~~~l~ip~~~vg~iIGk~G--~~Ik~I~~~sga~I~i~~~~----~~~~~er~v~I~G~~~~v~~A~~~I~~~l~ 193 (433)
....+++++.||..+++.||||+| ++|++|+++|||+|+|+... .+......|+|+|.+++|++|+.+|.+++-
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~P 105 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCH 105 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCE
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCC
Confidence 367899999999999999999999 99999999999999998643 122455789999999999999998876321
Q ss_pred hhccccCCCcccccCCCCCCCCCccccCCcccccCCCCCCCcccccCCCCCCCCccccccCcCCCCCCCCCccccccccC
Q psy11929 194 ECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSG 273 (433)
Q Consensus 194 e~~~~~~~~~~~~~~p~~~~~~p~~~~g~~~~~~~g~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 273 (433)
-
T Consensus 106 l------------------------------------------------------------------------------- 106 (376)
T 3n89_A 106 F------------------------------------------------------------------------------- 106 (376)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCcccCCCCCCCCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC---CCceEEEEEeCHHHHHHHHHHH
Q psy11929 274 SRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE---SHKKMFHIQGCQEAVSLAQYLI 350 (433)
Q Consensus 274 ~~~~~~~~~~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~---~~er~V~IsGt~e~v~~A~~lI 350 (433)
+..+.+|...++. ...+..|.+ ++..+++|.++...+ .....|+|+|.+.+++.|+..+
T Consensus 107 ---------------~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~ 168 (376)
T 3n89_A 107 ---------------TVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAA 168 (376)
T ss_dssp ---------------EEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHH
T ss_pred ---------------eEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHH
Confidence 1222333322111 011123333 467899999866543 2367899999997776665555
Q ss_pred HHHHHhccccCCCCCCCCCccccccccccchhccccccccccCCCCCcceecccc--H--HHHHHhhhccccccceee
Q psy11929 351 NMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPGSMVTLGG--L--SELLANIAASNVKSTVQT 424 (433)
Q Consensus 351 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~~~~G~iiGkgG--~--~e~~~~~~~~~~~~~~~~ 424 (433)
..++..-...... . ...+ +..+.||..+...|||||| + +.+ +..|++.+..|-..
T Consensus 169 ~~Ll~~l~~~e~~-~--------~~~~---------s~~v~V~~~~H~~IIGk~G~n~~IkkI-r~eTGv~I~FP~~~ 227 (376)
T 3n89_A 169 KRLNEILFRESPA-P--------ENNF---------TLHFTLSTYYVDQVLGSSSTAQLMPVI-ERETTTIISYPCYN 227 (376)
T ss_dssp HHHHHHHCC--CC-C--------SSCE---------EEEEEEEGGGHHHHTCCTTSCCHHHHH-HHHHTCEEECC---
T ss_pred HHHHHHHHhhhcc-c--------ccce---------EEEEEeCHHHHHHhhcCCCcchHHHHH-HHhhCCEEECCCCC
Confidence 5544332111100 0 0011 2457899999999999999 3 777 55689999888643
No 28
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=118.31 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=65.4
Q ss_pred eEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC-CCceEEEEEeCHHHHHHHHHHHHHHHHhccc
Q psy11929 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINMCIELQKN 359 (433)
Q Consensus 288 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-~~er~V~IsGt~e~v~~A~~lI~~~i~~~~~ 359 (433)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|+++.. ..+|.|+|+|+++++++|+.+|++++.+...
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhcccc
Confidence 36899999999999999999999999999999999987655 7789999999999999999999999987544
No 29
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=1.1e-14 Score=115.13 Aligned_cols=73 Identities=29% Similarity=0.534 Sum_probs=66.2
Q ss_pred ceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC----CCceEEEEEeCHHHHHHHHHHHHHHHHhccc
Q psy11929 287 FVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSLAQYLINMCIELQKN 359 (433)
Q Consensus 287 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~----~~er~V~IsGt~e~v~~A~~lI~~~i~~~~~ 359 (433)
..+.+|.||.+++|+||||+|++|++|++.|||+|+|++..+ +.+|.|+|+|++++++.|+.+|.+++.+...
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 78 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQG 78 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccc
Confidence 357899999999999999999999999999999999998642 6789999999999999999999999987543
No 30
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.51 E-value=6.1e-14 Score=110.28 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=64.6
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC---CCceEEEEEeCHHHHHHHHHHHHHHHH
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE---SHKKMFHIQGCQEAVSLAQYLINMCIE 355 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~---~~er~V~IsGt~e~v~~A~~lI~~~i~ 355 (433)
...+.+|.||.+++|+||||+|++|++|+++|||+|.|.+... +.+|.|+|+|+++++++|+.+|.+++.
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 4577899999999999999999999999999999999998653 678999999999999999999999874
No 31
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=117.75 Aligned_cols=71 Identities=28% Similarity=0.382 Sum_probs=65.3
Q ss_pred EEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC----CCceEEEEEeCHHHHHHHHHHHHHHHHhccc
Q psy11929 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSLAQYLINMCIELQKN 359 (433)
Q Consensus 289 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~----~~er~V~IsGt~e~v~~A~~lI~~~i~~~~~ 359 (433)
+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+ ..+|.|+|+|+++++++|+.+|.++|.+...
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~~ 82 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPLC 82 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcccc
Confidence 6899999999999999999999999999999999998743 4689999999999999999999999987643
No 32
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.51 E-value=4.1e-14 Score=113.43 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=67.1
Q ss_pred CCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC---CCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE---SHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 285 ~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~---~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
....+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... ..+|.|+|+|+++++++|+.+|.+++.+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 35788999999999999999999999999999999999998653 57899999999999999999999999753
No 33
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.47 E-value=2e-13 Score=106.61 Aligned_cols=73 Identities=36% Similarity=0.565 Sum_probs=67.7
Q ss_pred CCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 121 ~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
...++++|.||.+++|.||||+|++|++|+++|||+|.+.+ ..+++.+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~-~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE-PLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC-TTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC-CCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999985 34677899999999999999999999999987
No 34
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.46 E-value=8.6e-14 Score=107.06 Aligned_cols=72 Identities=39% Similarity=0.589 Sum_probs=67.0
Q ss_pred CCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 122 ~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
..++.+|+||.+++|.||||+|++|++|+++|||+|.+.+ ..+++.+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~-~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN-PVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC-CCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC-CCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999999986 35678899999999999999999999999875
No 35
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=1.1e-13 Score=108.15 Aligned_cols=73 Identities=34% Similarity=0.525 Sum_probs=66.9
Q ss_pred CCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 121 ~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
...++++|+||.+++|.||||+|++|++|+++|||+|.+.+. .++..+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-VEGSSGRQVTITGSAASISLAQYLINARLSS 75 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-CTTCSEEEEEEEECHHHHHHHHHHHHHHTC-
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-CCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999863 4677899999999999999999999999887
No 36
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=1.4e-13 Score=110.28 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=67.9
Q ss_pred CCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccccC
Q psy11929 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIELQKNNT 361 (433)
Q Consensus 285 ~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i~~~~~~~ 361 (433)
..+++.+|.||.+++|.|||+||.+|++|+++|||+|+|++.. ..++.|+|+|+++++++|+.+|.+++.....+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~~~ 89 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-DPSNQIKITGTKEGIEKARHEVLLISAEQDKRS 89 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-SSCCEEEEEECHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-CCCCeEEEEECHHHHHHHHHHHHHHhhcccccc
Confidence 4578999999999999999999999999999999999999765 345899999999999999999999998765433
No 37
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.46 E-value=1e-13 Score=113.23 Aligned_cols=72 Identities=25% Similarity=0.353 Sum_probs=66.0
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC---CCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE---SHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~---~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|++..+ +.++.|+|+|+++++++|+.+|.+++...
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 3578899999999999999999999999999999999998654 36899999999999999999999999764
No 38
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.45 E-value=1.3e-13 Score=106.15 Aligned_cols=71 Identities=28% Similarity=0.566 Sum_probs=64.6
Q ss_pred eEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccC--CCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD--MLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 124 ~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~--~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
.+++|.||.+++|.||||+|++|++|+++|||+|.|.++ ..+++.++.|+|+|+++++.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999863 45677899999999999999999999998754
No 39
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.45 E-value=6.4e-14 Score=111.13 Aligned_cols=77 Identities=29% Similarity=0.469 Sum_probs=67.7
Q ss_pred CCCCCCceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCC--CCCcceEEEecccCCCCCCccccCCCC
Q psy11929 7 GKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG--ACPDRIVTVSGSVDNSSTSSVETGYPG 84 (433)
Q Consensus 7 ~~~~~~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~--~~~eRvv~I~G~~~~~~~~~v~~~~~~ 84 (433)
+.+.....++++|+||. +++|.||||+|++||+|+++|||+|+|++. +..+|+|+|+|+++
T Consensus 6 ~~~~~~~~~~~~i~Ip~----~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e------------- 68 (89)
T 1j5k_A 6 YGDLGGPIITTQVTIPK----DLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD------------- 68 (89)
T ss_dssp ----CCCEEEEEEEEEH----HHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHH-------------
T ss_pred CCCCCCCeEEEEEEECh----hhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHH-------------
Confidence 33445678999999999 999999999999999999999999999874 67899999999998
Q ss_pred CccccchHHHHHHHHHHHHhhhhhh
Q psy11929 85 HTLWVTSVDNVCTAYNFMCRSLEDY 109 (433)
Q Consensus 85 ~~~~~~a~~~v~~A~~~I~~~~~~~ 109 (433)
++.+|..+|.+++.+.
T Consensus 69 ---------~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 69 ---------QIQNAQYLLQNSVKQY 84 (89)
T ss_dssp ---------HHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhh
Confidence 9999999999988774
No 40
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=2.8e-13 Score=109.07 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=67.1
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC--CCceEEEEEeCHHHHHHHHHHHHHHHHhccc
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE--SHKKMFHIQGCQEAVSLAQYLINMCIELQKN 359 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~--~~er~V~IsGt~e~v~~A~~lI~~~i~~~~~ 359 (433)
..++.+|.||.+++|.|||++|++|++|+++|||+|+|++..+ ..+|.|+|+|+++++++|+.+|..++.....
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999998764 4679999999999999999999999876543
No 41
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.44 E-value=4.5e-13 Score=105.29 Aligned_cols=74 Identities=26% Similarity=0.427 Sum_probs=66.7
Q ss_pred CCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCC-CCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML-PMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 121 ~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~-~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
......+|.||.+++|.||||+|++|++|+++|||+|.+.++.. +.+.+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45678899999999999999999999999999999999987543 457899999999999999999999998764
No 42
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.43 E-value=1.9e-13 Score=103.67 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=62.3
Q ss_pred CceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHH
Q psy11929 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCI 354 (433)
Q Consensus 286 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i 354 (433)
...+.+|.||.+++|.|||++|++|++|+++|||+|.|+++. ..+|.|+|+|+++++++|+.+|.+.+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999876 46789999999999999999998753
No 43
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=4.7e-13 Score=107.23 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=66.8
Q ss_pred CCceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 285 ~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
...++.+|.||.+++|.|||++|++|++|+++|||+|+|++..+..++.|+|+|+++++++|+.+|.+++.+.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999998865456789999999999999999999988764
No 44
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=111.49 Aligned_cols=70 Identities=27% Similarity=0.536 Sum_probs=64.1
Q ss_pred EEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCC--CCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLP--MSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 125 ~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
+++|+||.+++|+||||+|++||+|+++|||+|+|.++..+ +..+|.|+|+|+.++|.+|+.+|.+++.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999875432 35789999999999999999999999887
No 45
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.42 E-value=5.3e-13 Score=106.48 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=67.4
Q ss_pred CCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 121 ~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
...++.+|.||.+++|.||||+|++|++|+++|||+|.|.++. ++..+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-GGLPERSCMLTGTPESVQSAKRLLDQIVEK 84 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-TTCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-CCCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999999999998643 466889999999999999999999999988
No 46
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=2.8e-13 Score=106.99 Aligned_cols=71 Identities=28% Similarity=0.566 Sum_probs=66.1
Q ss_pred eEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccC--CCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD--MLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 124 ~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~--~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
.+++|+||.+++|.||||+|++|++|+++|||+|.|.++ ..+++.++.|+|+|+++++.+|+.+|.+++.+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999864 45677899999999999999999999999987
No 47
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.41 E-value=3e-13 Score=108.40 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=66.5
Q ss_pred CCceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCC----CCcceEEEecccCCCCCCccccCCCCCc
Q psy11929 11 EDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGA----CPDRIVTVSGSVDNSSTSSVETGYPGHT 86 (433)
Q Consensus 11 ~~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~----~~eRvv~I~G~~~~~~~~~v~~~~~~~~ 86 (433)
....++++|+||. +++|.||||+|++||+|+++|||+|+|.+.+ ..+|+|+|+|+++
T Consensus 11 ~p~~~~~~i~Ip~----~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~--------------- 71 (94)
T 1x4m_A 11 GPGNAVQEIMIPA----SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY--------------- 71 (94)
T ss_dssp CCCCEEEEEEECH----HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTT---------------
T ss_pred CCCcEEEEEEECh----hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHH---------------
Confidence 4567899999999 9999999999999999999999999998854 3789999999888
Q ss_pred cccchHHHHHHHHHHHHhhhhhh
Q psy11929 87 LWVTSVDNVCTAYNFMCRSLEDY 109 (433)
Q Consensus 87 ~~~~a~~~v~~A~~~I~~~~~~~ 109 (433)
++.+|+.+|.+++.+.
T Consensus 72 -------~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 72 -------KVQQAKEMVLELIRDQ 87 (94)
T ss_dssp -------THHHHHHHHHHHHCCC
T ss_pred -------HHHHHHHHHHHHHhcc
Confidence 9999999999988763
No 48
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.38 E-value=5.4e-13 Score=101.09 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=62.8
Q ss_pred ceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccchH
Q psy11929 13 TLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTSV 92 (433)
Q Consensus 13 ~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a~ 92 (433)
...+..|.||. .++|.|||++|++|++|+++|||+|+|++.+..+|.|+|+|+.+
T Consensus 3 ~~~~~~i~I~~----~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~--------------------- 57 (71)
T 1vig_A 3 RMDYVEINIDH----KFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQ--------------------- 57 (71)
T ss_dssp CCEEEEEEECS----SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSH---------------------
T ss_pred ceEEEEEEECH----HHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHH---------------------
Confidence 45788999999 99999999999999999999999999999887889999999988
Q ss_pred HHHHHHHHHHHhhh
Q psy11929 93 DNVCTAYNFMCRSL 106 (433)
Q Consensus 93 ~~v~~A~~~I~~~~ 106 (433)
++.+|..+|.+++
T Consensus 58 -~v~~A~~~I~~i~ 70 (71)
T 1vig_A 58 -GVQQAKRELLELA 70 (71)
T ss_dssp -HHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHh
Confidence 9999999998753
No 49
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.5e-13 Score=104.47 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=63.3
Q ss_pred CCceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccc
Q psy11929 11 EDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVT 90 (433)
Q Consensus 11 ~~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~ 90 (433)
....++++|.||. +++|+||||+|++||+|+++|||+|+|+..+ ++|+|+|+|+++
T Consensus 6 ~~~~~~~~i~VP~----~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~-~~~~v~ItG~~e------------------- 61 (83)
T 2dgr_A 6 SGGQTTIQVRVPY----RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD-KEPVFAVTGMPE------------------- 61 (83)
T ss_dssp SCCSEEEEEECCH----HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS-SCCEEEEEECTT-------------------
T ss_pred CCCceEEEEEeCh----HHeeeeECCCchHHHHHHHHhCCeEEecCCC-CCCeEEEEcCHH-------------------
Confidence 3456899999999 9999999999999999999999999998644 479999999999
Q ss_pred hHHHHHHHHHHHHhhhh
Q psy11929 91 SVDNVCTAYNFMCRSLE 107 (433)
Q Consensus 91 a~~~v~~A~~~I~~~~~ 107 (433)
++.+|+.+|.+++.
T Consensus 62 ---~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 62 ---NVDRAREEIEAHIT 75 (83)
T ss_dssp ---THHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHh
Confidence 99999999998654
No 50
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=106.54 Aligned_cols=71 Identities=27% Similarity=0.398 Sum_probs=64.2
Q ss_pred CeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 123 PLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 123 ~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
..+++|+||.++++.||||+|++||+|+++|||+|+|.++. +...+|.|+|+|+++++++|+.+|.+++.+
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-~~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-GTGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-SSSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC-CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999998642 456789999999999999999999999988
No 51
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.35 E-value=1.6e-12 Score=106.13 Aligned_cols=74 Identities=24% Similarity=0.427 Sum_probs=66.6
Q ss_pred CCCCceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCC----CCcceEEEecccCCCCCCccccCCCC
Q psy11929 9 IDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGA----CPDRIVTVSGSVDNSSTSSVETGYPG 84 (433)
Q Consensus 9 ~~~~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~----~~eRvv~I~G~~~~~~~~~v~~~~~~ 84 (433)
-.....++++|+||. +++|.||||+|++||+|+++|||+|+|.+.. ..+|.|+|+|+.+
T Consensus 9 ~s~~ap~~~~i~Ip~----~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~------------- 71 (104)
T 1we8_A 9 LTENTPVFEQLSVPQ----RSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK------------- 71 (104)
T ss_dssp CSSSCEEEEEEEEET----TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-------------
T ss_pred cCCCCCEEEEEEECh----hheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-------------
Confidence 345667899999999 9999999999999999999999999998742 2589999999999
Q ss_pred CccccchHHHHHHHHHHHHhhhhh
Q psy11929 85 HTLWVTSVDNVCTAYNFMCRSLED 108 (433)
Q Consensus 85 ~~~~~~a~~~v~~A~~~I~~~~~~ 108 (433)
++.+|+.+|.+++.+
T Consensus 72 ---------~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 72 ---------EVAAAKHLILEKVSE 86 (104)
T ss_dssp ---------HHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHhh
Confidence 999999999998865
No 52
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=8.1e-13 Score=105.81 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=67.1
Q ss_pred CCceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccc
Q psy11929 11 EDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVT 90 (433)
Q Consensus 11 ~~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~ 90 (433)
++..++.+|.||. .++|.|||++|++||+|+++|||+|+|++.+..++.|+|+|+++
T Consensus 13 l~~~~t~~i~Ip~----~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e------------------- 69 (94)
T 2cte_A 13 LQTQASATVAIPK----EHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKE------------------- 69 (94)
T ss_dssp CCSCEEEEEECCT----TTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHH-------------------
T ss_pred hCCceEEEEEECh----HHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHH-------------------
Confidence 4567999999999 99999999999999999999999999998766678999999988
Q ss_pred hHHHHHHHHHHHHhhhhhh
Q psy11929 91 SVDNVCTAYNFMCRSLEDY 109 (433)
Q Consensus 91 a~~~v~~A~~~I~~~~~~~ 109 (433)
++.+|..+|.+++.+.
T Consensus 70 ---~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 70 ---GIEKARHEVLLISAEQ 85 (94)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhcc
Confidence 9999999999988774
No 53
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=2.3e-12 Score=104.99 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=64.3
Q ss_pred ceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Q psy11929 287 FVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 287 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i~~~ 357 (433)
..+.+|.||.+++|.|||+||++|++|+++|||+|+|+++. ...+.|+|+|+++++++|+.+|.+++...
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 47889999999999999999999999999999999999866 35579999999999999999999998764
No 54
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=3.8e-12 Score=102.36 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=66.5
Q ss_pred CCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 122 ~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
..+++.|.||..+++.|||++|++|++|+++|||+|.|+++..+...++.|+|+|+.+++.+|+.+|..++.+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999997544455789999999999999999999999887
No 55
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=7.4e-12 Score=100.10 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=69.0
Q ss_pred CCCceEEEEEeCcccccccccCCCchHHHHHhHh-CCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccccC
Q psy11929 284 GDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQIS-GAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIELQKNNT 361 (433)
Q Consensus 284 ~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~s-GA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i~~~~~~~ 361 (433)
.....+.+|.||.++++.|||++|.+|++|+++| ||+|.|+++. +..+.|+|+|+.+++++|+.+|.+++.......
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e~~~ 90 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-SGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKS 90 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-TTCCEEEEESCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-CCcceEEEEcCHHHHHHHHHHHHHHHhhhhhcc
Confidence 4567889999999999999999999999999999 9999999865 567799999999999999999999998765443
No 56
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=4.2e-12 Score=101.67 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=68.4
Q ss_pred CCCceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCC-CCcceEEEecccCCCCCCccccCCCCCccc
Q psy11929 10 DEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGA-CPDRIVTVSGSVDNSSTSSVETGYPGHTLW 88 (433)
Q Consensus 10 ~~~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~-~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~ 88 (433)
++...+++.|.||. .++|.|||++|++||+|+++|||+|+|++.+ ..+|.|+|+|.++
T Consensus 12 ~l~~~vt~~i~Ip~----~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e----------------- 70 (95)
T 2ctm_A 12 ELEQMVSEDVPLDH----RVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPE----------------- 70 (95)
T ss_dssp CTTTCCCEEEECCT----TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHH-----------------
T ss_pred hhcccEEEEEEECH----HHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHH-----------------
Confidence 45667899999999 9999999999999999999999999999864 3578999999988
Q ss_pred cchHHHHHHHHHHHHhhhhhhcc
Q psy11929 89 VTSVDNVCTAYNFMCRSLEDYHI 111 (433)
Q Consensus 89 ~~a~~~v~~A~~~I~~~~~~~~~ 111 (433)
++.+|+.+|..++.++..
T Consensus 71 -----~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 71 -----NVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp -----HHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 999999999998887644
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=2.9e-12 Score=103.87 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHh-hCceEEeccCCCCCCCccEE
Q psy11929 94 NVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDL-SGANVQVASDMLPMSTERIV 172 (433)
Q Consensus 94 ~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~-sga~I~i~~~~~~~~~er~v 172 (433)
+|.+|+.+|.+.+. ..++.+|.||..+++.|||++|++|++|+++ ++++|.|++ .++.|
T Consensus 11 ~V~~A~~~i~~~~~--------------~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------~~~~I 70 (102)
T 2ctf_A 11 KLGQALTEVYAKAN--------------SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE------GEDKI 70 (102)
T ss_dssp CCCCSCCCCCCCCC--------------CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS------SSCEE
T ss_pred HHHHHHHHHHHHhc--------------CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC------CCCEE
Confidence 66666666554432 2378999999999999999999999999997 589999985 36799
Q ss_pred EEEccHHHHHHHHHHHHHHHHh
Q psy11929 173 TVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 173 ~I~G~~~~v~~A~~~I~~~l~e 194 (433)
+|+|+++.|.+|..+|..++.+
T Consensus 71 tI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 71 TLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp EEEECHHHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=9.1e-12 Score=101.43 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=64.9
Q ss_pred ceEEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccchH
Q psy11929 13 TLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTSV 92 (433)
Q Consensus 13 ~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a~ 92 (433)
..++..|.||. .++|.|||++|++||+|+++|||+|+|++.+...+.|+|+|+.+
T Consensus 15 ap~~~~i~Ip~----~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e--------------------- 69 (104)
T 2ctk_A 15 VPVTIEVEVPF----DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAA--------------------- 69 (104)
T ss_dssp SCEEEEEECCH----HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHH---------------------
T ss_pred CCEEEEEEECh----HHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHH---------------------
Confidence 46788999999 99999999999999999999999999999876778999999988
Q ss_pred HHHHHHHHHHHhhhhhh
Q psy11929 93 DNVCTAYNFMCRSLEDY 109 (433)
Q Consensus 93 ~~v~~A~~~I~~~~~~~ 109 (433)
++.+|+.+|..++.+.
T Consensus 70 -~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 70 -NLDRAKAGLLERVKEL 85 (104)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhH
Confidence 9999999999887663
No 59
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=6.2e-11 Score=96.06 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=62.3
Q ss_pred ceEEEEEeCcccccccccCCCchHHHHHhH-hCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccc
Q psy11929 287 FVETEIVLTDDIAGCVIGKAGSRLLEIRQI-SGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIELQKN 359 (433)
Q Consensus 287 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~-sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i~~~~~ 359 (433)
..+.+|.||.++++.|||++|++|++|++. ++++|.|++. ++.|+|+|++++|++|+..|+.++.+-..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----EDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS----SCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC----CCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999996 6999999983 47999999999999999999999876443
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=3.6e-11 Score=96.13 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=68.9
Q ss_pred CCCCceEEEEEEeccCCcccccceeeecCchHHHHHHHHh-CCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCcc
Q psy11929 9 IDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKES-GAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTL 87 (433)
Q Consensus 9 ~~~~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~ 87 (433)
...+..++..|.||. .+++.|||++|++||+|+++| ||+|+|++.+...+.|+|+|+.+
T Consensus 11 ~e~~~~vt~~i~Ip~----~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~---------------- 70 (95)
T 2ctj_A 11 KDLANIAEVEVSIPA----KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSS---------------- 70 (95)
T ss_dssp CCCCSSCCEEEECCH----HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHH----------------
T ss_pred HHHhhcEEEEEEECH----HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHH----------------
Confidence 346677899999999 999999999999999999999 99999999888888999999999
Q ss_pred ccchHHHHHHHHHHHHhhhhhh
Q psy11929 88 WVTSVDNVCTAYNFMCRSLEDY 109 (433)
Q Consensus 88 ~~~a~~~v~~A~~~I~~~~~~~ 109 (433)
++.+|+.+|.+++.+.
T Consensus 71 ------~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 71 ------DVEKAKKQLLHLAEEK 86 (95)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhhh
Confidence 9999999999988774
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=6.4e-10 Score=87.34 Aligned_cols=64 Identities=27% Similarity=0.500 Sum_probs=57.6
Q ss_pred CCceEEEEEeCcccccccccCCCchHHHHHhHhCCe-EEEccCCCCCceEEEEEe-CHHHHHHHHHHHHH
Q psy11929 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQ-INIHTGTESHKKMFHIQG-CQEAVSLAQYLINM 352 (433)
Q Consensus 285 ~~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~-I~I~~~~~~~er~V~IsG-t~e~v~~A~~lI~~ 352 (433)
...+..+|.||.+++|.|||++|.+|++|+++|||+ |.|.++ +..|+|.| +.+++++|+.+|..
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed----dG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED----TGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT----TTEEEEEESSHHHHHHHHHHHSC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC----CCEEEEEECCHHHHHHHHHHHHh
Confidence 356889999999999999999999999999999998 999763 37899999 79999999999844
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.68 E-value=2.8e-08 Score=77.97 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=57.6
Q ss_pred CCCeEEEEEeccCcccceecCCchhHHHHHHhhCce-EEeccCCCCCCCccEEEEEc-cHHHHHHHHHHHHHH
Q psy11929 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGAN-VQVASDMLPMSTERIVTVHG-NPDTISQAIYQICLV 191 (433)
Q Consensus 121 ~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~-I~i~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~~ 191 (433)
...+...|.||.+++|.+||++|.+|++|+++||++ |.+.. .+..|+|.| +.+++++|+.+|..+
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e------ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE------DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET------TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc------CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 566888999999999999999999999999999998 99964 258999999 899999998887543
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=1.1e-07 Score=78.69 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=59.4
Q ss_pred CceEEEEEeCcc-------cccccccCCCchHHHHHhHhCCeEEEccCCC-----------CCceEEEEEeC-HHHHHHH
Q psy11929 286 DFVETEIVLTDD-------IAGCVIGKAGSRLLEIRQISGAQINIHTGTE-----------SHKKMFHIQGC-QEAVSLA 346 (433)
Q Consensus 286 ~~~t~~i~VP~~-------~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-----------~~er~V~IsGt-~e~v~~A 346 (433)
...+.+++||-+ ++|.|||++|.+||+|+++|||+|.|..... .++-.|.|++. ++++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 457788888876 7899999999999999999999999974321 24457777765 8999999
Q ss_pred HHHHHHHHHhcc
Q psy11929 347 QYLINMCIELQK 358 (433)
Q Consensus 347 ~~lI~~~i~~~~ 358 (433)
+.+|.+++....
T Consensus 90 ~~~Ie~Ll~~v~ 101 (119)
T 2yqr_A 90 KKLCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhchH
Confidence 999999987643
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=8.8e-08 Score=79.28 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=58.1
Q ss_pred ceEEEEEEeccC--Cc-ccccceeeecCchHHHHHHHHhCCeEEEeCCCC------------CcceEEEecccCCCCCCc
Q psy11929 13 TLITMRCLFHSS--VN-VNEISCLIGPGGCIVRRLRKESGAKISITDGAC------------PDRIVTVSGSVDNSSTSS 77 (433)
Q Consensus 13 ~~~~~rilvp~~--~~-~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~------------~eRvv~I~G~~~~~~~~~ 77 (433)
..+..|+.||.. .| .+++|.|||++|.+||+|+++|||+|.|...++ ++-.|.|++...
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~------ 83 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP------ 83 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH------
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH------
Confidence 467889999874 23 679999999999999999999999999975332 233566665433
Q ss_pred cccCCCCCccccchHHHHHHHHHHHHhhhhh
Q psy11929 78 VETGYPGHTLWVTSVDNVCTAYNFMCRSLED 108 (433)
Q Consensus 78 v~~~~~~~~~~~~a~~~v~~A~~~I~~~~~~ 108 (433)
+++.+|+.+|.+++.+
T Consensus 84 ---------------e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 84 ---------------EGLAAAKKLCENLLQT 99 (119)
T ss_dssp ---------------HHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHhhc
Confidence 3889999999888765
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=1.3e-07 Score=79.85 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=61.2
Q ss_pred CceEEEEEeCcc------cccccccCCCchHHHHHhHhCCeEEEccCCC-----------------CCceEEEEEeC-HH
Q psy11929 286 DFVETEIVLTDD------IAGCVIGKAGSRLLEIRQISGAQINIHTGTE-----------------SHKKMFHIQGC-QE 341 (433)
Q Consensus 286 ~~~t~~i~VP~~------~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-----------------~~er~V~IsGt-~e 341 (433)
...+.+|.||.+ ++|.|||.+|.+||+|+++|||+|.|..... .++-.|.|+++ .+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 467889999988 8999999999999999999999999976321 23668889995 78
Q ss_pred HHHHHHHHHHHHHHh
Q psy11929 342 AVSLAQYLINMCIEL 356 (433)
Q Consensus 342 ~v~~A~~lI~~~i~~ 356 (433)
.+++|..+|..++..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999864
No 66
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=7.7e-08 Score=81.23 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=56.5
Q ss_pred ceEEEEEEeccCCccc------ccceeeecCchHHHHHHHHhCCeEEEeCCCC------------------CcceEEEec
Q psy11929 13 TLITMRCLFHSSVNVN------EISCLIGPGGCIVRRLRKESGAKISITDGAC------------------PDRIVTVSG 68 (433)
Q Consensus 13 ~~~~~rilvp~~~~~~------~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~------------------~eRvv~I~G 68 (433)
..++.++.||. + ++|.|||++|.+||+|+++|||+|.|...++ .+-.|.|++
T Consensus 5 ~k~~~kv~IP~----~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a 80 (131)
T 1k1g_A 5 TRVSDKVMIPQ----DEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTA 80 (131)
T ss_dssp CCEEEEEECCT----TTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEE
T ss_pred ceEEEEEEECC----ccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEE
Confidence 46889999997 6 8999999999999999999999999976321 133455555
Q ss_pred ccCCCCCCccccCCCCCccccchHHHHHHHHHHHHhhhhh
Q psy11929 69 SVDNSSTSSVETGYPGHTLWVTSVDNVCTAYNFMCRSLED 108 (433)
Q Consensus 69 ~~~~~~~~~v~~~~~~~~~~~~a~~~v~~A~~~I~~~~~~ 108 (433)
... +.+.+|+.+|..++.+
T Consensus 81 ~~~---------------------e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 81 NTM---------------------ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp SSH---------------------HHHHHHHHHHHHHHTT
T ss_pred CCH---------------------HHHHHHHHHHHHHHhc
Confidence 433 4899999999988765
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.30 E-value=8.7e-07 Score=75.19 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=55.2
Q ss_pred EEEEEEeccC-Cc-ccccceeeecCchHHHHHHHHhCCeEEEeCCCCC--------------------cceEEEecccCC
Q psy11929 15 ITMRCLFHSS-VN-VNEISCLIGPGGCIVRRLRKESGAKISITDGACP--------------------DRIVTVSGSVDN 72 (433)
Q Consensus 15 ~~~rilvp~~-~~-~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~--------------------eRvv~I~G~~~~ 72 (433)
++-|+.||.+ .| .+++|.|||++|.++|+|+++|||+|.|...|+. .--|.|++....
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 5678888862 12 4569999999999999999999999999875421 115667775431
Q ss_pred CCCCccccCCCCCccccchHHHHHHHHHHHHhhhh
Q psy11929 73 SSTSSVETGYPGHTLWVTSVDNVCTAYNFMCRSLE 107 (433)
Q Consensus 73 ~~~~~v~~~~~~~~~~~~a~~~v~~A~~~I~~~~~ 107 (433)
..|...+.+|+.+|..++.
T Consensus 82 ----------------~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 ----------------NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHSS
T ss_pred ----------------hhHHHHHHHHHHHHHHHCC
Confidence 1122367888888887765
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.09 E-value=3.4e-06 Score=71.57 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=54.4
Q ss_pred eEEEEEeCccc------ccccccCCCchHHHHHhHhCCeEEEccCCC-------------------CCceEEEEEeC-HH
Q psy11929 288 VETEIVLTDDI------AGCVIGKAGSRLLEIRQISGAQINIHTGTE-------------------SHKKMFHIQGC-QE 341 (433)
Q Consensus 288 ~t~~i~VP~~~------vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~-------------------~~er~V~IsGt-~e 341 (433)
.+.+++||.+. +|.|||.+|.++|+|+++|||+|.|..... .++--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 35677787544 999999999999999999999999997542 12237889985 32
Q ss_pred -----HHHHHHHHHHHHHHh
Q psy11929 342 -----AVSLAQYLINMCIEL 356 (433)
Q Consensus 342 -----~v~~A~~lI~~~i~~ 356 (433)
.+++|..+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 689999999998853
No 69
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.08 E-value=8.4e-06 Score=67.79 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=64.8
Q ss_pred EEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccc
Q psy11929 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIELQKN 359 (433)
Q Consensus 289 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i~~~~~ 359 (433)
...|.+....++.|+|++|+.|+.|+..|.|.|++..-..+++-.|+|.|++....+|+.+|+...+..+.
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999987557789999999999999999999998877654
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.95 E-value=1.2e-05 Score=84.70 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=53.9
Q ss_pred eEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeC-HHHHHHHHHHHHHHH
Q psy11929 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGC-QEAVSLAQYLINMCI 354 (433)
Q Consensus 288 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt-~e~v~~A~~lI~~~i 354 (433)
....|.||.+++|.|||+||++||.|+++|||+|.|.++ -.|.|.|+ ++..++|+.+|.+++
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~-----G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE-----ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----SEEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC-----cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999864 57899887 688999999987654
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.87 E-value=1.9e-05 Score=83.21 Aligned_cols=94 Identities=15% Similarity=0.280 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCcc
Q psy11929 91 SVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTER 170 (433)
Q Consensus 91 a~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er 170 (433)
+.+...+++..|.+.+++.-... ........+....+-||.+++|.|||++|++||+|+++|||+|.|.. +-
T Consensus 535 aL~~A~~g~~~I~~~m~~al~~~-~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-------~G 606 (630)
T 3u1k_A 535 AIQQASVAKKEILQIMNKTISKP-RASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD-------EE 606 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSC-CSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-------Cc
Confidence 33444455555555555432211 11122345677889999999999999999999999999999999974 46
Q ss_pred EEEEEcc-HHHHHHHHHHHHHHH
Q psy11929 171 IVTVHGN-PDTISQAIYQICLVL 192 (433)
Q Consensus 171 ~v~I~G~-~~~v~~A~~~I~~~l 192 (433)
.|.|.|. .+.+.+|+.+|..++
T Consensus 607 ~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 607 TFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEEeCCHHHHHHHHHHHHHHh
Confidence 8999885 688899999887654
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.64 E-value=4e-05 Score=65.36 Aligned_cols=104 Identities=20% Similarity=0.263 Sum_probs=71.8
Q ss_pred EEEEEEeccCCcccccceeeecCchHHHHHHHHhCCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccchHHH
Q psy11929 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTSVDN 94 (433)
Q Consensus 15 ~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a~~~ 94 (433)
=.+.++|+. ..+|+.||++|++|+.|+++.|-+|.+-.-.. .
T Consensus 36 dr~i~vVk~----g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~----------------------------------d 77 (144)
T 2cxc_A 36 NRLIFLVSE----GEAGRAIGRGGRLIKLLREALGKNIEVVEYSS----------------------------------D 77 (144)
T ss_dssp TEEEEEECT----TCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS----------------------------------S
T ss_pred CEEEEEEeC----CCccccCccCchHHHHHHHHhCCeeEEEEcCC----------------------------------C
Confidence 357889988 99999999999999999999999998865211 0
Q ss_pred HHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEec
Q psy11929 95 VCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVA 160 (433)
Q Consensus 95 v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~ 160 (433)
. ..+|...+....-.-- .-...+....+.+.||..+.+..|||+|.+++-..+-||.+|.|.
T Consensus 78 ~---~~fI~naLsPA~V~~V-~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 78 L---ERIVKNLFPGVKIESI-NVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp H---HHHHHHHSTTSCEEEE-EEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred H---HHHHHHhcCCceEEEE-EEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0 1122221111000000 000002345678899999999999999999999999999887664
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.49 E-value=0.00024 Score=59.09 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=59.4
Q ss_pred EEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 125 ~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
.+.|.+.+.+++.|+|++|+.|+.|+..|++.|++..- ..+..-.|+|.|++..-.+|+.+|..+..-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~--~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW--GPERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC--CTTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc--CCCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999853 224567899999999999999999887654
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.29 E-value=0.00013 Score=62.18 Aligned_cols=38 Identities=32% Similarity=0.558 Sum_probs=34.8
Q ss_pred eEEEEEeccCcccceecCCchhHHHHHHhhCceEEecc
Q psy11929 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS 161 (433)
Q Consensus 124 ~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~ 161 (433)
-.+.++|+...+|..||++|++|+.|+++.|-+|.+-.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 46788999999999999999999999999999998864
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.22 E-value=0.00018 Score=76.70 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=11.1
Q ss_pred EEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhc
Q psy11929 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGC-QEAVSLAQYLINMCIELQ 357 (433)
Q Consensus 289 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt-~e~v~~A~~lI~~~i~~~ 357 (433)
..++.||.+++|.|||+||.+||.|+++||++|.|.+. -.|.|.++ .++.++|+.+|..++...
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd-----G~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD-----GVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp ------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC-----ceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999999999999999999864 35677666 788999999998887643
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.13 E-value=0.00025 Score=75.58 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCcc
Q psy11929 91 SVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTER 170 (433)
Q Consensus 91 a~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er 170 (433)
+++...+++..|.+.+++.-... ........+....+.||.++++.|||+||.+||+|.++||++|.+.. +.
T Consensus 538 aL~~A~~g~~~I~~~m~~al~~~-r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d-------dG 609 (726)
T 4aid_A 538 ALAQAKEGRAHILGEMNKAMDAP-RADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND-------DG 609 (726)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSC-CSSCCSSCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-------Cc
Confidence 44455555666666555432111 11112234556778999999999999999999999999999999963 45
Q ss_pred EEEEEc-cHHHHHHHHHHHHHHHHh
Q psy11929 171 IVTVHG-NPDTISQAIYQICLVLIE 194 (433)
Q Consensus 171 ~v~I~G-~~~~v~~A~~~I~~~l~e 194 (433)
.|.|.+ +.+++++|+..|..++.+
T Consensus 610 ~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 610 VVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp ----CCSCHHHHHHHHHC-------
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 677776 588899999999888765
No 77
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.79 E-value=0.0089 Score=58.39 Aligned_cols=97 Identities=26% Similarity=0.351 Sum_probs=66.2
Q ss_pred ccccceeeecCchHHHHHHHHh-CCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccchHHHHHHHHHHHHhh
Q psy11929 27 VNEISCLIGPGGCIVRRLRKES-GAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTSVDNVCTAYNFMCRS 105 (433)
Q Consensus 27 ~~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a~~~v~~A~~~I~~~ 105 (433)
++-+|+.||++|++|+.|.++. |=+|.|-.-. .+ . ..+|...
T Consensus 248 iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s-----------~d-----------------------p---~~fi~na 290 (366)
T 1k0r_A 248 LNAKGACIGPMGQRVRNVMSELSGEKIDIIDYD-----------DD-----------------------P---ARFVANA 290 (366)
T ss_dssp CCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC-----------SS-----------------------H---HHHHHHH
T ss_pred CCCcccccCCcchHHHHHHHHhCCCeEEEEEcC-----------CC-----------------------H---HHHHHHh
Confidence 4668999999999999999998 8888886511 01 0 1122222
Q ss_pred hhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccC
Q psy11929 106 LEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162 (433)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~ 162 (433)
+....-. .-.........+.+.||..+.+..|||+|.+++-..+-||.+|.|..+
T Consensus 291 lsPA~V~--~V~~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 291 LSPAKVV--SVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTTSCCS--EEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred cCCccee--EEEEEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 1110000 000000124468899999999999999999999999999999999753
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.60 E-value=0.011 Score=54.74 Aligned_cols=96 Identities=25% Similarity=0.341 Sum_probs=63.9
Q ss_pred ccccceeeecCchHHHHHH-HHhCCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccchHHHHHHHHHHHHhh
Q psy11929 27 VNEISCLIGPGGCIVRRLR-KESGAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTSVDNVCTAYNFMCRS 105 (433)
Q Consensus 27 ~~~vg~IIGk~G~~Ik~I~-~~tga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a~~~v~~A~~~I~~~ 105 (433)
++-+|+-||++|++|+.|. +-.|=+|.|-.-.. + ...+|...
T Consensus 125 iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~-----------d--------------------------p~~fi~na 167 (251)
T 2asb_A 125 LNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD-----------D--------------------------PARFVANA 167 (251)
T ss_dssp CCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS-----------S--------------------------HHHHHHHH
T ss_pred CCHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC-----------C--------------------------HHHHHHhc
Confidence 5678999999999999994 55688888865210 1 00112221
Q ss_pred hhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEecc
Q psy11929 106 LEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS 161 (433)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~ 161 (433)
|....-. .-.........+.+.||..+.+..|||+|.+++-..+-||.+|.|..
T Consensus 168 lsPA~V~--~V~i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 168 LSPAKVV--SVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TTTSCCS--EEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred cCCcceE--EEEEEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 1110000 00000011246789999999999999999999999999999999975
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.34 E-value=0.022 Score=52.62 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=37.6
Q ss_pred eEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC
Q psy11929 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE 328 (433)
Q Consensus 288 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~ 328 (433)
.+..+.||.+..+.-|||+|+|++--.+.||.+|.|....+
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 46899999999999999999999999999999999986654
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.31 E-value=0.022 Score=55.66 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=38.0
Q ss_pred ceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCC
Q psy11929 287 FVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE 328 (433)
Q Consensus 287 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~ 328 (433)
.....+.||.+..+..|||+|.|++-..+.||.+|.|....+
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 456899999999999999999999999999999999976653
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.71 E-value=0.012 Score=62.85 Aligned_cols=62 Identities=24% Similarity=0.244 Sum_probs=0.0
Q ss_pred EEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeC-HHHHHHHHHHHHHHHH
Q psy11929 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGC-QEAVSLAQYLINMCIE 355 (433)
Q Consensus 289 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt-~e~v~~A~~lI~~~i~ 355 (433)
...+.||.++++.+||+||.+|+.|.+++|+.|.|.++ ..|.|++. .+..++|..+|...+.
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~d-----g~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD-----GTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEEEEECHHHhcccccccceeeeeeehhhCceEEecCC-----ccEEEecCCHHHHHHHHHHHHHHhh
Confidence 35788999999999999999999999999999988863 46777665 4667778777776654
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.17 E-value=0.0054 Score=65.91 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCcc
Q psy11929 91 SVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTER 170 (433)
Q Consensus 91 a~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er 170 (433)
+.+...+++..|.+.+.+.-... .......+....+.||.+.++.+||++|.+||+|.+++|+.|.+.. +.
T Consensus 567 aL~~A~~~~~~I~~~m~~al~~~--~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-------dG 637 (757)
T 1e3p_A 567 ALKQARDARLHILDVMMEAIDTP--DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-------DG 637 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSC--CCCCTTSCBCCCC------------------CTTCCCCCSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-------Cc
Confidence 34445555555555555422211 1111233444567899999999999999999999999999998863 45
Q ss_pred EEEEEc-cHHHHHHHHHHHHHHH
Q psy11929 171 IVTVHG-NPDTISQAIYQICLVL 192 (433)
Q Consensus 171 ~v~I~G-~~~~v~~A~~~I~~~l 192 (433)
.|.|.. +....++|+..|..+.
T Consensus 638 ~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 638 TIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp --CCCBSSHHHHCC---------
T ss_pred eEEEecCCHHHHHHHHHHHHHhc
Confidence 677766 4566666766665543
No 83
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.90 E-value=0.0073 Score=64.88 Aligned_cols=59 Identities=25% Similarity=0.268 Sum_probs=19.5
Q ss_pred EEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeC-HHHHHHHHHHHHHHH
Q psy11929 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGC-QEAVSLAQYLINMCI 354 (433)
Q Consensus 291 ~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt-~e~v~~A~~lI~~~i 354 (433)
.|.||.+++|.+||++|.+|+.|++++|+.|.|.+. ..|.|++. .+..++|+..|..+.
T Consensus 601 ~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~d-----G~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 601 TVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDD-----GTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CC------------------CTTCCCCCSCC-------------CCCBSSHHHHCC---------
T ss_pred EEEEChHHeehcccccceeeehhhHhhCCEEEecCC-----ceEEEecCCHHHHHHHHHHHHHhc
Confidence 577999999999999999999999999999999852 56777766 456677777776654
No 84
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.88 E-value=0.019 Score=61.37 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCcc
Q psy11929 91 SVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTER 170 (433)
Q Consensus 91 a~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er 170 (433)
+.+...+++..|.+.+.+.-.... .......+....+.||.++++.+||++|.+|+.|.+++|+.|.+.. +.
T Consensus 528 ~l~~A~~~~~~I~~~m~~al~~~~-~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-------dg 599 (723)
T 3cdi_A 528 ALNQAKGARLHILGVMEQAINAPR-GDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-------DG 599 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-hhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-------Cc
Confidence 334444555555555544211110 1111234556778899999999999999999999999999998863 45
Q ss_pred EEEEEc-cHHHHHHHHHHHHHHHHh
Q psy11929 171 IVTVHG-NPDTISQAIYQICLVLIE 194 (433)
Q Consensus 171 ~v~I~G-~~~~v~~A~~~I~~~l~e 194 (433)
.+.|.+ +.+.+++|...|..++.+
T Consensus 600 ~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 600 TVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp -------------------------
T ss_pred cEEEecCCHHHHHHHHHHHHHHhhh
Confidence 677766 456677787777665543
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.82 E-value=0.065 Score=52.05 Aligned_cols=96 Identities=23% Similarity=0.380 Sum_probs=65.0
Q ss_pred ccccceeeecCchHHHHHHHHh-CCeEEEeCCCCCcceEEEecccCCCCCCccccCCCCCccccchHHHHHHHHHHHHhh
Q psy11929 27 VNEISCLIGPGGCIVRRLRKES-GAKISITDGACPDRIVTVSGSVDNSSTSSVETGYPGHTLWVTSVDNVCTAYNFMCRS 105 (433)
Q Consensus 27 ~~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~eRvv~I~G~~~~~~~~~v~~~~~~~~~~~~a~~~v~~A~~~I~~~ 105 (433)
++-+|+.||.+|.+|+.|.++. |=+|.+-.-. .+ . ..+|...
T Consensus 244 iDpvGacvg~~G~ri~~i~~el~ge~Idii~~s-----------~d-----------------------~---~~fi~na 286 (344)
T 1hh2_P 244 VDPIGACIGEGGSRIAAILKELKGEKLDVLKWS-----------DD-----------------------P---KQLIANA 286 (344)
T ss_dssp SCHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC-----------SS-----------------------H---HHHHHHH
T ss_pred ccccceeeccCCcEeHHHHHHhCCCeeeEEecC-----------CC-----------------------H---HHHHHHh
Confidence 5678999999999999999998 7888775411 01 0 0122221
Q ss_pred hhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEecc
Q psy11929 106 LEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS 161 (433)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~ 161 (433)
|....-. .-.-.......+.+.||..+.+.-|||+|.+++--..-||.+|.|..
T Consensus 287 l~Pa~v~--~v~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 287 LAPATVI--EVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TCSSCCS--EEEEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred cCccEEE--EEEEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 1110000 00000022346789999999999999999999999999999999864
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.49 E-value=0.13 Score=49.98 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=36.4
Q ss_pred ceEEEEEeCcccccccccCCCchHHHHHhHhCCeEEEccC
Q psy11929 287 FVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG 326 (433)
Q Consensus 287 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~ 326 (433)
..+..+.||.+..+.-|||+|+|++--.+.||.+|.|...
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 4568999999999999999999999999999999998653
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=73.58 E-value=1.2 Score=34.44 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=23.3
Q ss_pred EEEEEeccCCcccccceeeecCchHHHHHHHH
Q psy11929 16 TMRCLFHSSVNVNEISCLIGPGGCIVRRLRKE 47 (433)
Q Consensus 16 ~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~ 47 (433)
.+++.+.. ..-|.|||++|..|++|+.+
T Consensus 36 ~i~I~I~t----arPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILA----TRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEE----SCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEe----CCCceEEcCCcHHHHHHHHH
Confidence 35667777 88899999999999998875
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=73.22 E-value=1.5 Score=37.29 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=23.9
Q ss_pred EEEEEeccCCcccccceeeecCchHHHHHHHHh
Q psy11929 16 TMRCLFHSSVNVNEISCLIGPGGCIVRRLRKES 48 (433)
Q Consensus 16 ~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~t 48 (433)
++.+-+.. ...|.||||.|.+++.|+--+
T Consensus 34 ~i~i~i~g----ed~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDG----EDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEE----GGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEec----CCcceEECCCCcchHHHHHHH
Confidence 34555667 889999999999999998765
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=61.30 E-value=3.8 Score=34.76 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=39.2
Q ss_pred EEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHHHHHHHh
Q psy11929 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194 (433)
Q Consensus 125 ~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 194 (433)
++.+.+.....|.||||.|.+++.||--+.. .+.+.. .-.-.+-+.|=.+.-++.+..+...+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~--~vn~~~---~~~V~LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFN--WIHPTY---GYSIRLEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHH--HHHHHH---SCEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHH--HhhhcC---CceEEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 4667778899999999999999998854421 111110 0011223444455556666666666655
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=56.46 E-value=4.3 Score=31.31 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=23.7
Q ss_pred eEEEEEeccCcccceecCCchhHHHHHHh
Q psy11929 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDL 152 (433)
Q Consensus 124 ~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~ 152 (433)
..+++.|....-|.|||++|..|++|+.+
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 35677888888899999999988887654
No 91
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=47.70 E-value=9.8 Score=35.84 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=31.9
Q ss_pred CCceEEEEEEeccCCcccccceeeecCchHHHHHHH--------HhCCeEEEe
Q psy11929 11 EDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRK--------ESGAKISIT 55 (433)
Q Consensus 11 ~~~~~~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~--------~tga~I~v~ 55 (433)
....+...|+|... ++-+.||||+|+.||+|.. -.|++|.+.
T Consensus 236 ~~~~i~a~i~ve~~---~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 236 NMLVIKGEIIVDRE---NLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp TSEEEEEEEEESSG---GGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CeEEEEEEEEEccC---CcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 34567788888873 6789999999999998755 466766653
No 92
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=47.02 E-value=14 Score=33.47 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCc
Q psy11929 94 NVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGA 155 (433)
Q Consensus 94 ~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga 155 (433)
...+|...+.++++.+.-...-........-.+.+.+.....|.||||.|.++..||--+..
T Consensus 62 ~~~~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~ 123 (225)
T 3gku_A 62 LQDKAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSL 123 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHH
Confidence 34566666666665432110000000011224556667778999999999999999976653
No 93
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.77 E-value=8.5 Score=34.39 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=22.3
Q ss_pred EEEEeccCCcccccceeeecCchHHHHHHHH
Q psy11929 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKE 47 (433)
Q Consensus 17 ~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~ 47 (433)
+++.+.. ..-|.|||++|..|++|+.+
T Consensus 42 ~~I~I~t----~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFA----ANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEE----SCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEe----CCCceEEcCCchhHHHHHHH
Confidence 4566666 78899999999999998765
No 94
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=40.52 E-value=8.7 Score=35.01 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=23.3
Q ss_pred EEEEeccCCcccccceeeecCchHHHHHHHHh
Q psy11929 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKES 48 (433)
Q Consensus 17 ~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~t 48 (433)
+++.+.. ..-|.|||++|..|++|+.+-
T Consensus 46 i~I~I~t----~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRA----TRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEE----SCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEe----CCCceEEcCCchhHHHHHHHH
Confidence 5667777 888999999999999888653
No 95
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=40.05 E-value=50 Score=29.69 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=44.0
Q ss_pred EEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHH
Q psy11929 290 TEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLI 350 (433)
Q Consensus 290 ~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI 350 (433)
.-+.++..++.+++|+++..++.|...+++.|-+-... .|-|.++......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG-----~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNG-----LIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTTS-----EEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECCc-----EEEEeCCchhHHHHHHHH
Confidence 34689999999999999999999999999999998765 455888876444443333
No 96
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=39.94 E-value=8.4 Score=34.86 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=25.6
Q ss_pred EEEEeccCCcccccceeeecCchHHHHHHHHhCCeE
Q psy11929 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKI 52 (433)
Q Consensus 17 ~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tga~I 52 (433)
+.+.+.. ...|.||||.|++++.||--+...+
T Consensus 94 i~i~i~g----~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 94 MNVNLKG----DDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEEC----HHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcC----CccceeecCCCeEhHHHHHHHHHHH
Confidence 3444566 7899999999999999998877444
No 97
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=38.95 E-value=12 Score=34.31 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=24.0
Q ss_pred EEEEEeccCCcccccceeeecCchHHHHHHHHh
Q psy11929 16 TMRCLFHSSVNVNEISCLIGPGGCIVRRLRKES 48 (433)
Q Consensus 16 ~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~t 48 (433)
.+++.+.. ..-|.|||++|..|++|+.+-
T Consensus 48 ~i~I~I~t----arPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKA----TKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEE----SCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEc----CCCceEECCCchHHHHHHHHH
Confidence 45677777 888999999999999988763
No 98
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=37.12 E-value=8.9 Score=34.69 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=24.2
Q ss_pred EEEEEeccCCcccccceeeecCchHHHHHHHHh
Q psy11929 16 TMRCLFHSSVNVNEISCLIGPGGCIVRRLRKES 48 (433)
Q Consensus 16 ~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~t 48 (433)
.+++.+.. ..-|.|||++|..|++|+.+-
T Consensus 45 ~i~I~I~t----arPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRA----TRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEEC----TTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEe----CCCceEEcCCchhHHHHHHHH
Confidence 45677777 888999999999999988764
No 99
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=35.94 E-value=16 Score=34.34 Aligned_cols=38 Identities=32% Similarity=0.507 Sum_probs=28.9
Q ss_pred CceEEEEEeCcccc-cccccCCCchHHHHHh--------HhCCeEEE
Q psy11929 286 DFVETEIVLTDDIA-GCVIGKAGSRLLEIRQ--------ISGAQINI 323 (433)
Q Consensus 286 ~~~t~~i~VP~~~v-G~IIGkgG~~Ik~I~~--------~sGA~I~I 323 (433)
..+...++|..+.. +-||||+|+.||+|.. ..|++|.+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 35677888888766 9999999999998744 55666544
No 100
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=34.60 E-value=63 Score=29.00 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=40.8
Q ss_pred EEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEccHHHHHHHHHHH
Q psy11929 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQI 188 (433)
Q Consensus 126 ~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G~~~~v~~A~~~I 188 (433)
+-+.++...+.+++|+++..++.|.+.+++.|.+-.+ -+ |=|.++......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N------G~-IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN------GL-IWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT------SE-EEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC------cE-EEEeCCchhHHHHHHHH
Confidence 3456788889999999999999999999999998542 33 44778765443333333
No 101
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=33.30 E-value=9.1 Score=34.12 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=21.3
Q ss_pred EEEEeccCCcccccceeeecCchHHHHHHHH
Q psy11929 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKE 47 (433)
Q Consensus 17 ~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~ 47 (433)
+++.+.. ..-|.|||++|+.|++|+.+
T Consensus 63 i~I~I~~----~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHT----ARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEE----SCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEE----CCCCccccCcchHHHHHHHH
Confidence 3455555 77899999999999988764
No 102
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=32.59 E-value=11 Score=34.54 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=24.3
Q ss_pred EEEEEeccCCcccccceeeecCchHHHHHHHHhC
Q psy11929 16 TMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESG 49 (433)
Q Consensus 16 ~~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~tg 49 (433)
.+++.+.. ..-|.|||++|..|++|+.+-.
T Consensus 45 ~i~I~I~t----arPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 45 RTEIIILA----TRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp EECCEEEE----SCHHHHHCGGGHHHHHHHHHHH
T ss_pred cEEEEEEe----CCCceEEcCCchHHHHHHHHHH
Confidence 45666777 8889999999999999888643
No 103
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=32.39 E-value=94 Score=27.90 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=43.1
Q ss_pred EEEEeCcccccccccCCCchHHHHHhHhCCeEEEccCCCCCceEEEEEeC-HHHHHHHHHHH
Q psy11929 290 TEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGC-QEAVSLAQYLI 350 (433)
Q Consensus 290 ~~i~VP~~~vG~IIGkgG~~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt-~e~v~~A~~lI 350 (433)
.-+.++...+.+++|++|..+..|.+.+++.|-+-... .|-|++. +.....+...|
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG-----~IWi~~~~~~~~~~~~~ai 206 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARNG-----RIHLECPNEDLEAIAVMAI 206 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETTT-----EEEEECSCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeCCC-----EEEEecCCHHHHHHHHHHH
Confidence 45689999999999999999999998999999998754 5667754 44444444444
No 104
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=30.69 E-value=11 Score=34.35 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEeccCCcccccceeeecCchHHHHHHHH
Q psy11929 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKE 47 (433)
Q Consensus 17 ~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~ 47 (433)
+++.+.. ..-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t----~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHT----ARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEE----SCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEE----CCCCccccCcchHHHHHHHH
Confidence 3455556 77899999999999988764
No 105
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=30.58 E-value=21 Score=32.46 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=22.2
Q ss_pred EEEEeCcccccccccCCCchHHHHHhH
Q psy11929 290 TEIVLTDDIAGCVIGKAGSRLLEIRQI 316 (433)
Q Consensus 290 ~~i~VP~~~vG~IIGkgG~~Ik~I~~~ 316 (433)
.++.|-...-|.|||++|..|++|+..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 567777778899999999999987643
No 106
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=28.70 E-value=16 Score=33.33 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEeccCCcccccceeeecCchHHHHHHHHh
Q psy11929 18 RCLFHSSVNVNEISCLIGPGGCIVRRLRKES 48 (433)
Q Consensus 18 rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~t 48 (433)
++.+.. ..-|.|||++|+.|++|+++-
T Consensus 65 ~I~I~t----arPg~vIGkkG~~I~~L~~~L 91 (239)
T 2vqe_C 65 AVTVHV----AKPGVVIGRGGERIRVLREEL 91 (239)
T ss_dssp CCEEEE----SCGGGTSCSSSSHHHHHHHHH
T ss_pred EEEEEe----CCCcceecCCchHHHHHHHHH
Confidence 445555 778999999999999988763
No 107
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=27.57 E-value=94 Score=21.92 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=29.2
Q ss_pred hHHHHHhHhCCeEEEccCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Q psy11929 309 RLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIEL 356 (433)
Q Consensus 309 ~Ik~I~~~sGA~I~I~~~~~~~er~V~IsGt~e~v~~A~~lI~~~i~~ 356 (433)
.|++-++..|+--.--+ .++-.|.|+|-|+||.+-..-=.+++..
T Consensus 22 mirqarkfagtvtytld---gndleiritgvpeqvrkelakeaerlak 66 (85)
T 2kl8_A 22 MIRQARKFAGTVTYTLD---GNDLEIRITGVPEQVRKELAKEAERLAK 66 (85)
T ss_dssp HHHHHTTTTCEEEEEEC---SSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEec---CCeeEEEEecChHHHHHHHHHHHHHHHH
Confidence 46666666665432222 3457899999999998765555555544
No 108
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.19 E-value=23 Score=31.54 Aligned_cols=27 Identities=33% Similarity=0.646 Sum_probs=22.3
Q ss_pred EEEEEeccCcccceecCCchhHHHHHH
Q psy11929 125 QLKLVIPATHCGSLIGKGGCKIKDIRD 151 (433)
Q Consensus 125 ~~~l~ip~~~vg~iIGk~G~~Ik~I~~ 151 (433)
.+++.|....-|.|||++|..|++|+.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 456777778889999999999988764
No 109
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.86 E-value=15 Score=33.11 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=21.6
Q ss_pred EEEEeccCCcccccceeeecCchHHHHHHHHh
Q psy11929 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKES 48 (433)
Q Consensus 17 ~rilvp~~~~~~~vg~IIGk~G~~Ik~I~~~t 48 (433)
+++.+.. ..-|.|||++|+.|++|+++-
T Consensus 72 i~I~I~~----~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHM----GFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEE----SCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEe----cCCCcEecCCcHHHHHHHHHH
Confidence 3445555 677899999999999988764
No 110
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=25.31 E-value=30 Score=31.54 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=24.9
Q ss_pred CeEEEEEeccCcccceecCCchhHHHHHHh
Q psy11929 123 PLQLKLVIPATHCGSLIGKGGCKIKDIRDL 152 (433)
Q Consensus 123 ~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~ 152 (433)
...+++.|....-|.|||++|..|++|++.
T Consensus 46 ~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 46 PTKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SSCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CCeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 345778888888999999999999987764
No 111
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.39 E-value=24 Score=31.85 Aligned_cols=29 Identities=21% Similarity=0.584 Sum_probs=24.2
Q ss_pred eEEEEEeccCcccceecCCchhHHHHHHh
Q psy11929 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDL 152 (433)
Q Consensus 124 ~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~ 152 (433)
..+++.|....-|.|||++|..|++|++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 45677888888999999999999887654
No 112
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=22.77 E-value=29 Score=32.51 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=25.5
Q ss_pred eEEEEEeCcccc-cccccCCCchHHHHH--------hHhCCeEEE
Q psy11929 288 VETEIVLTDDIA-GCVIGKAGSRLLEIR--------QISGAQINI 323 (433)
Q Consensus 288 ~t~~i~VP~~~v-G~IIGkgG~~Ik~I~--------~~sGA~I~I 323 (433)
....+.|..+.. +.||||+|+.||+|. +..|++|.+
T Consensus 230 i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 230 IKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 444666765444 999999999999874 456666554
No 113
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=22.43 E-value=44 Score=28.82 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=30.4
Q ss_pred ceEEEEEeCcccccccccCCCchHHHH-HhHh--------CC---eEEEccC
Q psy11929 287 FVETEIVLTDDIAGCVIGKAGSRLLEI-RQIS--------GA---QINIHTG 326 (433)
Q Consensus 287 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I-~~~s--------GA---~I~I~~~ 326 (433)
.....+.||+++.|.+|| .+|+++ ++++ |+ .+.|.+.
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~ 54 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKDI 54 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEEE
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEeec
Confidence 456789999999999999 589995 9989 88 5666653
No 114
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=20.66 E-value=4.4e+02 Score=23.30 Aligned_cols=91 Identities=13% Similarity=0.193 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhhhhhcccccCCCCCCCCCeEEEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCC-----
Q psy11929 93 DNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMS----- 167 (433)
Q Consensus 93 ~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~----- 167 (433)
+.+..|.+.+.+.++++.-. ..-..+.++-.+-.-.++.= -.+..|....+..+...++..|+-
T Consensus 108 e~a~~A~~ki~~~L~~lG~~------v~~~~fkIqNIvas~dl~f~-----I~Le~la~~~~~~~~YEPE~fPGliyR~~ 176 (218)
T 3eik_A 108 KSSRMAAQRYAKIIHKLGFN------ATFDDFKIQNIVSSCDIKFS-----IRLEGLAYAHSNYCSYEPELFPGLIYRMV 176 (218)
T ss_dssp HHHHHHHHHHHHHHHHTTCC------CCCEEEEEEEEEEEEECSSC-----BCHHHHHHHSTTTEECCTTTSSSEEEEET
T ss_pred HHHHHHHHHHHHHHHHcCCC------cccccceEEEEEEEEECCCc-----CcHHHHHHhccCCcEECCccCceEEEEcC
Confidence 47888888888888775211 11123333333433233222 246666665555566655554431
Q ss_pred ---------CccEEEEEcc--HHHHHHHHHHHHHHHHh
Q psy11929 168 ---------TERIVTVHGN--PDTISQAIYQICLVLIE 194 (433)
Q Consensus 168 ---------~er~v~I~G~--~~~v~~A~~~I~~~l~e 194 (433)
..-.|.|+|. .+.+.+|...|..+|.+
T Consensus 177 ~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p~L~~ 214 (218)
T 3eik_A 177 KPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQ 214 (218)
T ss_dssp TTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 2356778884 68999999999999987
No 115
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=20.21 E-value=2.2e+02 Score=25.43 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=41.2
Q ss_pred EEEEeccCcccceecCCchhHHHHHHhhCceEEeccCCCCCCCccEEEEEc-cHHHHHHHHHHHH
Q psy11929 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHG-NPDTISQAIYQIC 189 (433)
Q Consensus 126 ~~l~ip~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~ 189 (433)
+-+.++...+.+++|+++..+..|.++++++|.+-. +..|-|.+ +......+...|.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-------NG~IWi~~~~~~~~~~~~~ai~ 207 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-------NGRIHLECPNEDLEAIAVMAIK 207 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-------TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-------CCEEEEecCCHHHHHHHHHHHH
Confidence 445788899999999999999999999999999864 23455765 4444444433333
No 116
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=20.09 E-value=25 Score=31.25 Aligned_cols=36 Identities=25% Similarity=0.562 Sum_probs=26.1
Q ss_pred EEEEEeccCcccceecCCchhHHHHHH----hhCceEEec
Q psy11929 125 QLKLVIPATHCGSLIGKGGCKIKDIRD----LSGANVQVA 160 (433)
Q Consensus 125 ~~~l~ip~~~vg~iIGk~G~~Ik~I~~----~sga~I~i~ 160 (433)
.+++.|....-|.|||++|+.|++|+. .++..+.+.
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I~ 101 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 101 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCCB
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 355667777789999999999988764 466554443
Done!